Citrus Sinensis ID: 016087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
MDRESGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEccEEEccccccccccccEEEccEEEEcHHHHHHHHHccccccEEEEcccccccEEEEEccccccEEEEEEccccEEEEEEEccEEEEEEEccccccEEEEccccccEEEEEEEEccccHHHHHHHccccccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccEEEEEEEcEEEEEcHHHHccccccEEEEcccccHHHHHHHHcHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEcccEEEEEEEEEEcccccccccHcHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEccccccccEEEcccccEHHEEEEcccccccccHcHHHccHHHHHHHHccccccEEEEEccccEEEEEEEcccEEEEEEEccccEEEEEccccccccccccEEEccEEEEEEEccccccEEEcHHHHccccEEcccc
Coil and Loop (DISEMBL)
mdresgddnIIMESLSHidrisnlpepilHHILSFLPFTQTVQTRVLSRTWKRAWHTFsvlkfdsdfFHQVFledsndgseaGKQKLREIFNYIKETLRIRHNEMIRLMNfslfvpgdsleiclpyidQCIFYALGCNVKELSLellgnprfnlpeiilcsNSIEILTLAglklesprsvklssLTKLFLMRVDATDLVLQSLLIGcplieylslqlcpglknlelsgltklnkfevcdAEELQRLCIIAQdvqevsiqgplpfqckfnlaSCKFLKYLRFALTHIKDewlcnqiskfpllESLLIagcddlksinissrslklleiYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAItfskshllfqtensssewyTEHFNFLQCSIVFPRW
Flexible Loop (DISEMBL)
MDRESGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDsndgseagkqKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAglklesprsVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLqcsivfprw
Low Complexity Region (SEG)
MDRESGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered region (IsUnstruct)
*************SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLE***********KLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVF***
Disordered Region (DISOPRED)
*********************SNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered Region (DISEMBL)
********NIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered Region (DISPRO)
******************DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRESGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
Q1PE04	258	F-box/LRR-repeat protein	yes	no	0.544	0.833	0.287	4e-16
Q9FX89	385	Putative F-box protein At	no	no	0.521	0.535	0.302	4e-15
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.516	0.447	0.285	8e-15
Q84W80	481	F-box/LRR-repeat protein	no	no	0.511	0.419	0.309	2e-11
Q501G5	307	F-box protein At5g03100 O	no	no	0.478	0.615	0.284	2e-11
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.541	0.456	0.257	3e-11
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.458	0.435	0.297	1e-10
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.458	0.404	0.315	1e-10
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.448	0.340	0.311	1e-10
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.653	0.615	0.275	1e-10

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 32/247 (12%)

Query: 19  DRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           D ISNLP+ ILHHILSF+P T   ++T VLS+ W+  W     L F+        +  + 
Sbjct: 28  DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query: 78  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
               A K                       + +F L     S      ++   I +A+  
Sbjct: 88  ASYTASK-----------------------ITSFHLCT---SYSYEAGHVHSSIEFAMSH 121

Query: 138 NVKELSLELLGNPRFN-LPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDAT 196
           NV  LSL     P  N  P+    S+S++ + L    L     V  +SL  L L R + +
Sbjct: 122 NVDNLSLAFSSFPPCNKFPDFFYTSSSLKRVELRSASLTPSCIVSWTSLRDLSLTRCNLS 181

Query: 197 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV----CDAEELQRLCIIAQD 252
           D     +L GCP++E LSL+ C  LK L+LS   +L + E+    C  E +Q + I+A  
Sbjct: 182 DKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFREPMQSMQIVAPH 241

Query: 253 VQEVSIQ 259
           +  + ++
Sbjct: 242 IHYLRLR 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 32/238 (13%)

Query: 2   DRESGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVL 61
           D  S    ++   L  +D IS+LP+ IL   LS +P    ++T VLS+ W+  W     L
Sbjct: 9   DGGSASVRVLKHCLEDVDSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHVWSETPSL 68

Query: 62  KFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLE 121
            FD  +   V                    ++I +TL +      ++M F L++      
Sbjct: 69  DFDDCYKLDV--------------------DFIDKTLALYRAR--KIMTFDLWITNG--- 103

Query: 122 ICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR-S 179
           I LPYID  I +A+  NV+ L L       +++P+ +  ++S++ L L     E +PR S
Sbjct: 104 INLPYIDGWIKFAMSRNVENLFLS-FDFRLYDVPDYLYINSSVKQLVLGTESSELNPRCS 162

Query: 180 VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237
           V  SSLTKL L     +D  +  +L GCP+IE L+L  C  L  L+L+    L   E+
Sbjct: 163 VSWSSLTKLSLF----SDESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKILEI 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 34/238 (14%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           +D IS+LP+ IL HILSF+P    + T +LS+ W+  W     L F+       F++++ 
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 78  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
               A K                       +M F L     SL   +P+++  I +A+  
Sbjct: 90  TRYTASK-----------------------MMRFHLHT---SLINNVPHLESWIKFAMSR 123

Query: 138 NVKELSLELLGN--PRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDA 195
           NV  LSL+L      +F  P+    ++S++ LT+    L+   ++    L KL+L     
Sbjct: 124 NVDHLSLDLWNQVANKFKFPDFFHINSSLKQLTVV---LDFSDTMIAICLKKLYLSTCLL 180

Query: 196 TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV-CD--AEELQRLCIIA 250
           +D  + ++L GCP++E L+L  C GL+ L+LS   +L   E+ C+    EL  + I+A
Sbjct: 181 SDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVA 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 37/239 (15%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           D IS LP+ IL  ILS+LP    ++T VLSR W+  W         SD +   F  D  D
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVW---------SDTWSLSFHRDRPD 87

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPY----IDQCIFYA 134
                        N I +  R       ++M+F +     +  I  P     ID  I +A
Sbjct: 88  AP---------CINRILDRYR-----APKMMSFRICSCCRAACISRPDTHADIDSWINFA 133

Query: 135 LGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLA-GLKLE----SPR-SVKLSSLTKL 188
           +  NV+ LSL  L   ++++PE +  ++S++ L L  G K +    +P+ SV  +SL  L
Sbjct: 134 MSRNVENLSL-YLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNL 192

Query: 189 FLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV---CDAEELQ 244
            L   + +D  +  +L GCP++E L L  C  LK L+LS   +L   E+   C  E  Q
Sbjct: 193 SLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQ 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 36/225 (16%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH---TFSVL--KFDSDFFHQVF 72
           +D IS+LP+ ILHHIL+  P    ++T VLS+ WK  W+   + S++  + D D  ++  
Sbjct: 8   VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67

Query: 73  LEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIF 132
              S                              ++ +F + +  D   + +P ID  I 
Sbjct: 68  SSYSTP----------------------------KIKSFDVTISRD---VTVPEIDTWIN 96

Query: 133 YALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMR 192
            AL    + +SL    + RF     I  S     LTL    L     V  SSL  L L R
Sbjct: 97  LALSRKAENVSLRFTSHYRFRDTFFINSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNR 156

Query: 193 VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237
              +D  +  +L GC L+E L+L LC  L +L+LS    L + E+
Sbjct: 157 CKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRRLEI 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 31/245 (12%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           +D IS+LP+ +L HI S++P    ++T VLS+ W+  W     L F+       +L+ S 
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFE-------WLKVS- 78

Query: 78  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
                 K   + + +Y    ++  H                S E    +++  I +A+  
Sbjct: 79  -----PKLINKTLASYTASKIKSFH-----------LCTRYSYEADTHHVNSSIEFAMSH 122

Query: 138 NVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDAT 196
           NV +LSL     +P +N  +    ++S++ + L  + L     V  +SL  L L     +
Sbjct: 123 NVDDLSLAFRRCSPFYNFDDCFYTNSSLKRVELRYVDLMPRCMVSWTSLKNLSLTDCTMS 182

Query: 197 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEV 256
           D     +L GCP++E LSL+ C  LK L LS   +L + E+      +R+  I   +  +
Sbjct: 183 DESFLEILSGCPILESLSLKFCMSLKYLNLSKSLRLTRLEI------ERISYIRAPMLSM 236

Query: 257 SIQGP 261
            I  P
Sbjct: 237 QIVAP 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 17/198 (8%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           D IS+LP+ I+ +IL+ L     ++T VLS  W+  W T + L FD     +  +  SND
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFD-----EKCVSPSND 60

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 138
                   +R    +I   L +    + +      F    S + C P IDQ + +     
Sbjct: 61  RCVVETNLVR----FITGVLLLHQGPIHK------FQLSTSFKQCRPDIDQWLLFLSRNG 110

Query: 139 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVK-LSSLTKLFLMRVDATD 197
           +KEL L+ LG   F +P  +     +  L L   + + P+  K  S L  L L ++    
Sbjct: 111 IKELVLK-LGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAP 169

Query: 198 LVLQSLLIGCPLIEYLSL 215
            V++SL+ GCPL+E+LSL
Sbjct: 170 EVIESLISGCPLLEFLSL 187

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 19/200 (9%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           DRIS+LP+ +L  ILS LP    + T VLS+ W+  W     LKFDS+ F+ VF +D+ D
Sbjct: 13  DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSN-FNPVFDDDNID 71

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 138
            +   +         + +TL +    ++  ++ S     D L + +      I  A    
Sbjct: 72  PTMFSEN--------VYKTLSLHKAPVLESLHLSFEGRTDCLHVGI-----WIATAFARG 118

Query: 139 VKELSLELL--GNPRFNLPEIILCSN-SIEILTLA-GLKLESPRSVKLSSLTKLFLMRVD 194
           V++L L+     +    LP ++   N S+EIL L   + L+ P  V L SL KL+L +V 
Sbjct: 119 VRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSLRKLYLDQVH 178

Query: 195 ATD-LVLQSLLIGCPLIEYL 213
             D   + +LL GCP ++ L
Sbjct: 179 FKDEESVCNLLCGCPSLQDL 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 92/209 (44%), Gaps = 32/209 (15%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           DRIS+LP P++ HILSFLP  +   T VLS+ W+  +   + L FD          D  D
Sbjct: 7   DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDD--------SDYQD 58

Query: 79  GSEAGKQKL-REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
           G      +L R    ++   L ++ N  +    FSL     + ++ L  +   I   LG 
Sbjct: 59  GKPKSDVELSRSFMEFVDRVLALQGNGSVN--KFSLEC--SNYDVDLARVTGWILNVLGR 114

Query: 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLS------SLTKLFLM 191
            V EL L +L  P   LP  I  S      TL  LKL     + L+       L KL  +
Sbjct: 115 GVSELDLSILEYP---LPSEIFVSK-----TLVRLKLGPANDLTLTLDRKDVFLPKLKTL 166

Query: 192 RVDATDLVLQS-----LLIGCPLIEYLSL 215
            +D  D+  +      LL GCP++E L L
Sbjct: 167 YIDCVDVQERGFGFVKLLSGCPVLEELVL 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 43/301 (14%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           +DRIS L + +L  ILSF+P    V T +LS+ W+  W   S L++D D +H        
Sbjct: 1   MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYD-DSYH-------- 51

Query: 78  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
                G  K    F Y   +L   +  +I+ ++ +L     +++I L      I +AL  
Sbjct: 52  ----TGDYKSFSQFVY--RSLLSNNAPVIKHLHLNLGPDCPAIDIGL-----WIGFALTR 100

Query: 138 NVKELSLELL---GNPRFNLPEIILCSNSIEILTLAG-LKLESPRSVKLSSLTKLFLMRV 193
            +++L + +     +  F+LP  +  S+++E L L   + L+ P SV L SL  L L  V
Sbjct: 101 RLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTV 160

Query: 194 D-ATDLVLQSLLIGCPLIEYLSLQ------------LCPGLKNLEL--SGLTKLNKFEVC 238
           D   D  L SLL GCP +E L ++            + P L+ L +      + +++ V 
Sbjct: 161 DYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRY-VI 219

Query: 239 DAEELQRLCIIAQDVQEVSIQGPLP--FQCKFNLASCKFLKYLRFALTHIKDEWLCNQIS 296
           D   L+ L I    V +V     +P   +   ++      K+LR ALT ++   LC  +S
Sbjct: 220 DVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLR-ALTSVRQLSLCLSLS 278

Query: 297 K 297
           +
Sbjct: 279 E 279

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.883	0.744	0.336	4e-41
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.883	0.744	0.336	6e-41
224124628	524	f-box family protein [Populus trichocarp	0.850	0.641	0.285	5e-35
224121624	528	predicted protein [Populus trichocarpa]	0.820	0.613	0.302	8e-31
357454743	761	Agglutinin alpha chain [Medicago truncat	0.848	0.440	0.285	1e-30
357454739	607	F-box/FBD/LRR-repeat protein [Medicago t	0.858	0.558	0.292	1e-26
356557323	833	PREDICTED: uncharacterized protein LOC10	0.875	0.415	0.275	2e-26
224119688	563	f-box family protein [Populus trichocarp	0.815	0.571	0.309	5e-25
147833276	521	hypothetical protein VITISV_011919 [Viti	0.805	0.610	0.329	5e-25
255590973	337	conserved hypothetical protein [Ricinus	0.653	0.765	0.307	6e-25

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 193/377 (51%), Gaps = 28/377 (7%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           +D IS LP+PIL HILSFL   Q +QT +LS+ W   W TF   +FD +FFH        
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFH-------- 52

Query: 78  DGSEAGKQKLR-EIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPYIDQCIFY 133
              E+  Q  R  + N++++TL+    ++  L  F L   F   +S+ +    +D+ I Y
Sbjct: 53  --IESKLQNKRFHLINFVEQTLK----QLKCLRKFKLHTDFPEPNSMVV----VDRWIDY 102

Query: 134 ALGCNVKELSLELL--GNPRFNLPEIILCSNSIEILTLAGLKL-ESPRSVKLSSLTKLFL 190
            L   V+EL + +      R+NLP+ +  + S+ +LT+   KL  S    KL S+  + L
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSL 162

Query: 191 MRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIA 250
           + V A D  ++ L+  CP I+++ L  C GL+NL L    +L   EV +   L      A
Sbjct: 163 LGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKA 222

Query: 251 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309
            ++Q    +G   FQ C  N++SCK LK L+ ++  I D+W     S+FPLLE L ++ C
Sbjct: 223 MNLQAFEFRGQ--FQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 310 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLF 369
             L+S+ ISS  LK   +  C  +  V I    LS  ++SGDVISF L A   S++ +  
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIEL 340

Query: 370 QTENSSSEWYTEHFNFL 386
                 + W  +   FL
Sbjct: 341 SPRIFDNPWVVKQIEFL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
           +D IS LP+PIL HILSFL   Q +QT +LS+ W   W TF   +FD +FFH        
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFH-------- 52

Query: 78  DGSEAGKQKLR-EIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPYIDQCIFY 133
              E+  Q  R  + N++++TL+    ++  L  F L   F   +S+ +    +D+ I Y
Sbjct: 53  --IESKLQNKRFHLINFVEQTLK----QLKCLRKFKLHTDFPEPNSMVV----VDRWIDY 102

Query: 134 ALGCNVKELSLELL--GNPRFNLPEIILCSNSIEILTLAGLKL-ESPRSVKLSSLTKLFL 190
            L   V+EL + +      R+NLP+ +  + S+ +LT+   KL  S    KL S+  + L
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSL 162

Query: 191 MRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIA 250
           + V A D  ++ L+  CP I+++ L  C GL++L L    +L   EV +   L      A
Sbjct: 163 LGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKA 222

Query: 251 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309
            ++Q    +G   FQ C  N++SCK LK L+ ++  I D+W     S+FPLLE L ++ C
Sbjct: 223 MNLQAFEFRGQ--FQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 310 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLF 369
             L+S+ ISS  LK   +  C  +  V I A  LS  ++SGDVISF L A   S++ +  
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIEL 340

Query: 370 QTENSSSEWYTEHFNFL 386
                 + W  +   FL
Sbjct: 341 SPRIFDNPWVVKQIEFL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 190/389 (48%), Gaps = 53/389 (13%)

Query: 15  LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLE 74
           +  +D IS LP+PI+ HI+S LP+    +  +LS+ +  AW +F ++  D        LE
Sbjct: 16  IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLE 75

Query: 75  DSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSL-FVPGDSLEICLPYIDQCIFY 133
            +      GKQKL    +Y+   L  R  + + L  FS  F   +S E     I+  I Y
Sbjct: 76  LT------GKQKLNSFLSYVGAFLSRRRLD-VSLEKFSFCFCLNNSSEQPNGGIENAICY 128

Query: 134 ALGCNVKELSLELLGN-----PRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKL 188
           A+  NVKEL L+ +G        ++LP  +L + S+ +L+L G  LE P           
Sbjct: 129 AIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPP----------- 177

Query: 189 FLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLT-KLNKFEVCDAEELQRLC 247
                       Q+L++  P I+ L L+ C G++ L +S  T K+   E C  + L+++ 
Sbjct: 178 ------------QNLVLDFPFIKELRLEKCKGMQTLSVSSQTLKIVVLESC--QRLEKVE 223

Query: 248 IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307
           I A +++  S  G     C  ++ +CK L+YL      I DEW+ +++++F  LE   + 
Sbjct: 224 IDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVV 283

Query: 308 GCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQL--------GA 359
           GC  L++ ++S+ +LK +E+ DC  L +++I + SL+ F Y G ++  Q+          
Sbjct: 284 GCRLLENFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFHAK 343

Query: 360 ITFSKSHLLFQTENSSSEWYTEHFNFLQC 388
           ++ S  H L        +W++   +FL C
Sbjct: 344 VSLSVDHPL------PHDWFSSFRDFLSC 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 180/367 (49%), Gaps = 43/367 (11%)

Query: 18  IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFD--------SDFFH 69
           +D IS  P+ +LHHILSFLP    ++T +LS+ WK    T+ +L F         SD  +
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 70  QVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQ 129
                 S + S+  +Q L +  NY+  ++         +  F LF+    LE+   ++D+
Sbjct: 61  ------SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELS-SHLDK 113

Query: 130 CIFYALGCNVKEL--SLELLGNPRF----NLPEIILCSNSIEILTLAG--LKLESPRSVK 181
            +   +    KE+   ++L G   F    ++P+ I  + S+ +L L G  +KLE    +K
Sbjct: 114 WVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIK 173

Query: 182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 241
           L SL KL L  V   D +L+ ++  CPL+E +SL+ C GLK +++  L +L KFE+    
Sbjct: 174 LHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSH- 232

Query: 242 ELQRLCIIAQDVQEVSIQGPL--PFQCKFNLAS---------CKFLKYLRFALTHIKDEW 290
                       + V I+ P    F C F + S         C+ LK L  + + + +  
Sbjct: 233 --------LSKPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELL 284

Query: 291 LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG 350
           L + + KF +LESL +  C  LK + ISS  LK LEI+ C  +++++I   +L   KY G
Sbjct: 285 LQDLVPKFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCG 344

Query: 351 DVISFQL 357
            V+   L
Sbjct: 345 SVVPVSL 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 182/350 (52%), Gaps = 15/350 (4%)

Query: 11  IMESLSHIDRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKF-DSDFF 68
           +++ +  +DRIS LP+ +++HILSFL  T+  ++T+ LS+ W+  W +++ L F +  F 
Sbjct: 34  MIQIVESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFA 93

Query: 69  HQVFLEDSNDGSEAGKQKLRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYI 127
             +  ED ++     +Q + + +  Y+   L+I+   ++ +M+F L           P +
Sbjct: 94  AGIGPEDGSNKENLFRQHVADSLHTYLANNLQIQ-KLLLHMMSFDL--------TDAPLV 144

Query: 128 DQCIFYALGCNVKELSLELLGNP--RFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSL 185
           D  +  A+  +++E+ L++      R+ LPE++L S ++  L L+G  L    ++ L  L
Sbjct: 145 DSWLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRRCGNIMLPRL 204

Query: 186 TKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQR 245
            KL+L +V   + ++ +L+  CP IE L    C GLK L +     L++ E+ +  +L+ 
Sbjct: 205 QKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYIH-CDSLSRLEIHNCNQLKT 263

Query: 246 LCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 305
             I A ++      G     CK NL  C  LK L      +  ++  NQ +KFPLLE L 
Sbjct: 264 AYIFAPNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLD 323

Query: 306 IAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 355
           +   D +KSI I +R L+ + +  C +L  V+I A  L  F+  G+ + +
Sbjct: 324 LCIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454739|ref|XP_003597650.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355486698|gb|AES67901.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 184/355 (51%), Gaps = 16/355 (4%)

Query: 7   DDNIIMESLSHIDRISNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSVLKF-D 64
           D   +++S+  +DRIS LP  ++HHILSFL      ++TR LS+ W+  W +F+ L F +
Sbjct: 60  DAGQMVQSVESVDRISELPNHVIHHILSFLRNVKDAIRTRSLSKRWRTMWFSFAALMFYE 119

Query: 65  SDFFHQVFLEDSNDGSEAGKQKLRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEIC 123
             F   +  ED ++     +Q + + +  Y+    +I H  ++ + +F L          
Sbjct: 120 QKFVAGIGPEDGSNKENLFRQHVADSLHTYLANNAQI-HKFLLHMTSFDL--------TD 170

Query: 124 LPYIDQCIFYALGCNVKELSLEL--LGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVK 181
            P +D  +  A+  ++KE+ L++    +  + LPE++L S ++  L L+G  L+S  ++ 
Sbjct: 171 APLVDSWLTSAVSQDIKEIDLQVGFKDSKLYTLPEVVLSSETLTGLRLSGCILQSFSNIM 230

Query: 182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 241
           L  L KL+L ++  ++L+L SL+  CP IE L L  C GLK L +   + L++ ++ +  
Sbjct: 231 LPRLQKLYLRKIHLSELILLSLISRCPSIEDLRLIQCSGLKFLCILHPS-LSRVDIHNCN 289

Query: 242 ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCK-FLKYLRFALTHIKDEWLCNQISKFPL 300
           +L+++ IIA ++      G     CK  L  C   LK L      +  ++  NQ S+F L
Sbjct: 290 QLKKVDIIAPNLDTFWFCGKKSTPCKVGLQGCNDSLKNLTIEHPLVSRDFCKNQFSRFSL 349

Query: 301 LESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 355
           LE L +   D  KS  I +RSL+ + +    +L   +I A  L  F+  G+ +S+
Sbjct: 350 LEKLDLCIFDKTKSFTIFNRSLQRIALKGGKKLTYAQIHAPKLVSFELKGENMSY 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 175/356 (49%), Gaps = 10/356 (2%)

Query: 4   ESGDDNIIMESLSHIDRISNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSVLK 62
           E   D +       +DRIS  P+ ++HHILS L      ++T VLS+ W+  W+++SVL 
Sbjct: 145 EKDSDEMDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLI 204

Query: 63  FDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEI 122
           FD   F          G E    K     +Y+  +L   + + +++    L +    L  
Sbjct: 205 FDERKFAAKI------GHEDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLE 258

Query: 123 CLPYIDQCIFYALGCNVKELSLEL-LGNPR-FNLPEIILCSNSIEILTLAGLKLESPRSV 180
             P ++  +  A+  N+KEL L + + N   + LP+ +  S ++  + L+G KL +  ++
Sbjct: 259 DAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNI 318

Query: 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA 240
           KL  L KL+L ++   +  +Q+L+  C  +E L +  C GLK+L +S L +L + E+   
Sbjct: 319 KLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHC 378

Query: 241 EELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPL 300
            +L+++ I A ++      G     CK +L  C  LK L      +  ++  NQ S FPL
Sbjct: 379 IQLKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPL 438

Query: 301 LESLLIAGCDDL-KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 355
           LE L ++  ++  + I IS+  L+   +  C +L  V + A +L  F+  G+ + +
Sbjct: 439 LEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPW 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           DRIS LP+ +LH+ILS+L     V+  VLS+TW R   +F V    SDF   V L     
Sbjct: 35  DRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPV----SDFSEDVLLLGKRY 90

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLP-YIDQCIFYALGC 137
             +  K K     ++++++L  +H+   R   F L +  DS +  L    D  +  A  C
Sbjct: 91  EIQDWKNKF---IDFVQDSLLAQHHHNTRSHKFRLSMDLDSYDPQLTSRADHLLELATKC 147

Query: 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAG-LKLESPR-SVKLSSLTKLFLMRVDA 195
            V E  L       + LP  +L +  I +L L G  KL  PR ++   SL  L LM V  
Sbjct: 148 GVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVLSLMNVRV 207

Query: 196 TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE-LQRLCIIAQDVQ 254
            + +LQ+L+ GCPLIE L+L  C G+K++ +SG  KL + EV + +  L+R+ I    ++
Sbjct: 208 DEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVNEGDSVLERMEIHVPSLR 267

Query: 255 EVS-IQGPLPFQCKFNLASCKFLKYLR---FALTHIKDEWLCNQISKFPLLESL-LIAGC 309
                 G +      ++  C+ L+ L+   + +T +  +   + I++FP L+ L L    
Sbjct: 268 TFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQDLIAQFPALKVLALNCYA 327

Query: 310 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKY 348
             +  I IS+  L+ L+++    L +V I + SL  FK+
Sbjct: 328 TSVSRIKISNPQLEKLQLWSSA-LTKVTITSPSLHSFKH 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 163/340 (47%), Gaps = 22/340 (6%)

Query: 19  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
           DRIS+LP+ IL  IL  LP     ++ +LS+ W++   +         F    FLE    
Sbjct: 6   DRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKL--SPFSSLSLLMFQCPDFLESCRK 63

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 138
            ++          N I  +LR+R  + + L    L +  D +E     ID  I  AL   
Sbjct: 64  NTDVS-----SFINAIDSSLRLRPKD-VNLARLRLHLDLDDIE-SESLIDSWIDAALERK 116

Query: 139 VKELSLELLGNPR-----FNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRV 193
           VKEL L L   PR     + LP  I  + +I +L+L   +LE    + L +L KL L ++
Sbjct: 117 VKELDLYL--RPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGDIDLPALRKLCLRQI 174

Query: 194 DATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDV 253
              +  ++ L+  CPLIE L +  C GL+ L +SGL  L++ EV     L+R+ I A  +
Sbjct: 175 RCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSL 234

Query: 254 QEVSIQ-GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL 312
           Q +    G LP  C   L  C+FL+ L     HI +++L N  S FP LE L I     L
Sbjct: 235 QHLVYHCGRLP--CDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDS-TRL 291

Query: 313 KSINISSRSLKLLE--IYDCLRLVEVKIAASSLSIFKYSG 350
           + I IS   LK LE  +    +  ++KI A +L  F YSG
Sbjct: 292 QRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSG 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 12/270 (4%)

Query: 18  IDRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDS 76
           ID IS LP  ++HHILS L   +   +T +LS+ W+  W ++ +L FD   F +   +  
Sbjct: 69  IDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQRKFQKQEKKVR 128

Query: 77  NDGSEAGKQKLREIFN-------YIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQ 129
              S++ K+K  EI         +++ TLR    +   +  F L +   ++E+   ++DQ
Sbjct: 129 RLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSYNVELS-AHVDQ 187

Query: 130 CIFYALGCNVKELSLELLGNPR--FNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTK 187
            I +A   N+K+L L +       +NLP+ +  +++I  L ++G KL +   +KLS+L K
Sbjct: 188 WIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRTCIDIKLSNLQK 247

Query: 188 LFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLC 247
           L   ++     ++Q+L++ CPLI+ L L  C GLK L LS   KL + ++     L+ + 
Sbjct: 248 LCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLSS-NKLYRVDIHFCHGLKNVE 306

Query: 248 IIAQDVQEVSIQGPLPFQCKFNLASCKFLK 277
           +++ ++Q     G    +CK NLA CK LK
Sbjct: 307 VLSPNLQTFWYHGKKSTRCKINLAMCKDLK 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.339	0.519	0.302	2.9e-18
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.6	0.519	0.272	4.8e-16
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.288	0.25	0.294	5.5e-12
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.458	0.435	0.313	6e-12
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.458	0.404	0.32	2.7e-11
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.288	0.245	0.294	2.8e-11
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.701	0.661	0.269	8.2e-11
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.475	0.361	0.317	1.3e-10
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.789	0.681	0.252	2.2e-10
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.486	0.420	0.289	1.7e-09

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 42/139 (30%), Positives = 69/139 (49%)

Query:   126 YIDQCIFYALGCNVKELSLELLGNPRFN-LPEIILCSNSIEILTLAGLKLESPRSVKLSS 184
             ++   I +A+  NV  LSL     P  N  P+    S+S++ + L    L     V  +S
Sbjct:   110 HVHSSIEFAMSHNVDNLSLAFSSFPPCNKFPDFFYTSSSLKRVELRSASLTPSCIVSWTS 169

Query:   185 LTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV----CDA 240
             L  L L R + +D     +L GCP++E LSL+ C  LK L+LS   +L + E+    C  
Sbjct:   170 LRDLSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFR 229

Query:   241 EELQRLCIIAQDVQEVSIQ 259
             E +Q + I+A  +  + ++
Sbjct:   230 EPMQSMQIVAPHIHYLRLR 248

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
 Identities = 74/272 (27%), Positives = 134/272 (49%)

Query:    93 YIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNP-- 150
             +I ETL  R+    ++M F L     SL   +P+++  I +A+  NV  LSL+L      
Sbjct:    84 FIDETLT-RYTAS-KMMRFHLHT---SLINNVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   151 RFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 210
             +F  P+    ++S++ LT+    L+   ++    L KL+L     +D  + ++L GCP++
Sbjct:   139 KFKFPDFFHINSSLKQLTVV---LDFSDTMIAICLKKLYLSTCLLSDESMANILFGCPIL 195

Query:   211 EYLSLQLCPGLKNLELSGLTKLNKFEV-CD--AEELQRLCIIAQDVQEVSIQGP-LPFQC 266
             E L+L  C GL+ L+LS   +L   E+ C+    EL  + I+A     + ++   LP  C
Sbjct:   196 ESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLP--C 253

Query:   267 KF-NLASCKFLKYL----RFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRS 321
                +++S K  K       F+ T IK ++L  Q++   +LE L      +++ + +    
Sbjct:   254 SLVDVSSLKEAKLNICIDSFSKT-IKADFL--QVTLLKMLEKL-----HNVEKLTLGGNF 305

Query:   322 LKLLEIYDCLR-----LVEVKIAASSLSIFKY 348
             L++L + + LR     + +VK       IF+Y
Sbjct:   306 LQILSVAE-LRGVPFPMFKVKDLTLETVIFQY 336

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 35/119 (29%), Positives = 61/119 (51%)

Query:   124 LPYIDQCIFYALGCNVKELSL---ELLGNPRFNLPEIILCSNSIEIL--TLAGLKLESPR 178
             +P +D  I +AL  NV+ LS+   +   +  +  P+I   S+S+++L  TL    +    
Sbjct:   104 VPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTC 163

Query:   179 SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237
             +V   SL  L L      D  + ++L GCP++E L+L  C  L+ L+LS    L + ++
Sbjct:   164 TVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 222

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 62/198 (31%), Positives = 94/198 (47%)

Query:    19 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
             D IS+LP+ I+ +IL+ L     ++T VLS  W+  W T + L FD     +  +  SND
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFD-----EKCVSPSND 60

Query:    79 GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 138
                     +R    +I   L + H   I    F L     S + C P IDQ + +     
Sbjct:    61 RCVVETNLVR----FITGVLLL-HQGPIH--KFQL---STSFKQCRPDIDQWLLFLSRNG 110

Query:   139 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVK-LSSLTKLFLMRVDATD 197
             +KEL L+L G   F +P  +     +  L L   + + P+  K  S L  L L ++    
Sbjct:   111 IKELVLKL-GEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAP 169

Query:   198 LVLQSLLIGCPLIEYLSL 215
              V++SL+ GCPL+E+LSL
Sbjct:   170 EVIESLISGCPLLEFLSL 187

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 64/200 (32%), Positives = 100/200 (50%)

Query:    19 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 78
             DRIS+LP+ +L  ILS LP    + T VLS+ W+  W     LKFDS+F + VF +D+ D
Sbjct:    13 DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNF-NPVFDDDNID 71

Query:    79 GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 138
              +   +         + +TL +    ++  ++ S     D    CL ++   I  A    
Sbjct:    72 PTMFSEN--------VYKTLSLHKAPVLESLHLSFEGRTD----CL-HVGIWIATAFARG 118

Query:   139 VKELSLELL--GNPRFNLPEIILCSN-SIEILTL-AGLKLESPRSVKLSSLTKLFLMRVD 194
             V++L L+     +    LP ++   N S+EIL L   + L+ P  V L SL KL+L +V 
Sbjct:   119 VRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSLRKLYLDQVH 178

Query:   195 ATDLV-LQSLLIGCPLIEYL 213
               D   + +LL GCP ++ L
Sbjct:   179 FKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
 Identities = 35/119 (29%), Positives = 59/119 (49%)

Query:   124 LPYIDQCIFYALGCNVKELSL---ELLGNPRFNLPEIILCSNSIEIL--TLAGLKLESPR 178
             +P +D  I +AL  NV+ LS+   +      +  P+I   S+S++ L  TL    +    
Sbjct:   105 VPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTC 164

Query:   179 SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237
             +V   SL  L L      D  + ++L GCP++E L+L  C  L+ L+LS    L + ++
Sbjct:   165 AVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 87/323 (26%), Positives = 148/323 (45%)

Query:    18 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 77
             +DRIS L + +L  ILSF+P    V T +LS+ W+  W   S L++D D +H        
Sbjct:     1 MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYD-DSYH-------- 51

Query:    78 DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 137
                  G  K    F Y   +L   +  +I+ ++ +L     +++I L      I +AL  
Sbjct:    52 ----TGDYKSFSQFVY--RSLLSNNAPVIKHLHLNLGPDCPAIDIGL-----WIGFALTR 100

Query:   138 NVKELSLELL---GNPRFNLPEIILCSNSIEILTLAG-LKLESPRSVKLSSLTKLFLMRV 193
              +++L + +     +  F+LP  +  S+++E L L   + L+ P SV L SL  L L  V
Sbjct:   101 RLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTV 160

Query:   194 D-ATDLVLQSLLIGCPLIEYLSLQ------------LCPGLKNLEL--SGLTKLNKFEVC 238
             D   D  L SLL GCP +E L ++            + P L+ L +      + +++ V 
Sbjct:   161 DYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRY-VI 219

Query:   239 DAEELQRLCIIAQDVQEV-SIQG-PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQIS 296
             D   L+ L I    V +V  I+  P   +   ++      K+LR ALT ++   LC  +S
Sbjct:   220 DVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLR-ALTSVRQLSLCLSLS 278

Query:   297 KFPLLESLLIAGCDDLKSINISS 319
             +      ++ +    L  +N+S+
Sbjct:   279 EVMCPSGIIFS---QLVHLNLST 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 67/211 (31%), Positives = 95/211 (45%)

Query:    12 MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQV 71
             M+ +S  DRIS+LP P++ HILSFLP  +   T VLS+ W+  +   + L FD       
Sbjct:     1 MDFVSR-DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDS----- 54

Query:    72 FLEDSNDGSEAGKQKL-REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQC 130
                D  DG      +L R    ++   L ++ N  +    FSL     + ++ L  +   
Sbjct:    55 ---DYQDGKPKSDVELSRSFMEFVDRVLALQGNGSVN--KFSLEC--SNYDVDLARVTGW 107

Query:   131 IFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLA---GLKLESPRS-VKLSSLT 186
             I   LG  V EL L +L  P   LP  I  S ++  L L     L L   R  V L  L 
Sbjct:   108 ILNVLGRGVSELDLSILEYP---LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLK 164

Query:   187 KLFLMRVDATD--LVLQSLLIGCPLIEYLSL 215
              L++  VD  +       LL GCP++E L L
Sbjct:   165 TLYIDCVDVQERGFGFVKLLSGCPVLEELVL 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 86/341 (25%), Positives = 144/341 (42%)

Query:     5 SGDDNIIMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFD 64
             +G+  +  +    +D ISNLPE +L  +L +LP    V++ VLS  W+  W         
Sbjct:     4 AGEKRVRAKGSREVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLS 63

Query:    65 SDFFH--QVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSL-E 121
                FH    F  D N         LR + +++        N    L +F L        E
Sbjct:    64 YCDFHVRNTFSYDHNTF-------LRFVDSFMG------FNSQSCLQSFRLEYDSSGYGE 110

Query:   122 ICLPYIDQCIFYALGCNVKELSL--ELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRS 179
               L  I + I   +   VK L +  +   N  F +P  +    ++  LTL GL L SP+ 
Sbjct:   111 PKLALIRRWINSVVSRKVKYLGVLDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKF 170

Query:   180 VKLSSLTKLFLMRVDATD-LVLQSLLIGCPLIEYLSLQ--LCPGLKNLELSGLTKLNKFE 236
             V L SL +L L  V   D + L++L+  CP++E L++    C   +   +   + L+   
Sbjct:   171 VSLPSLKELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTH 230

Query:   237 VCDAEE-LQRLCIIAQDVQEVSIQGPLPFQ-CKF---NLASCKFLKYLRFALTHIKDEWL 291
             V D +E L    ++A D  ++        +   F   +LAS              K  + 
Sbjct:   231 VADTDEMLNEDLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFN 290

Query:   292 CNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLR 332
              N ++K  ++   L+ G   +K++ I+S +L++  IYD  R
Sbjct:   291 PNDLNKRNMIRDFLV-GISSIKTLIIASSTLEV--IYDYSR 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 60/207 (28%), Positives = 93/207 (44%)

Query:    12 MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKF-DSDFFHQ 70
             M+S   +D  S LP+ ++ HILS LP  +   T VL++ W+  +     L F DSDF H 
Sbjct:     1 MDS-EKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHP 59

Query:    71 VFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQC 130
                +   DG       LR   +++   L ++    I+   FSL V      +    +D+ 
Sbjct:    60 QEGKREKDGI------LRSFMDFVDRVLALQGASPIK--KFSLNV---KTGVDPDRVDRW 108

Query:   131 IFYALGCNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLES-PRSVKLSSLTKL 188
             I   L   V  L+L +     ++LP EI +    +E+ T  G+ L      + L  L  L
Sbjct:   109 ICNVLQRGVSHLALFMDFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTL 168

Query:   189 FLMRVDATDLVLQSLLIGCPLIEYLSL 215
              L  V+      Q+LL  CP++E L L
Sbjct:   169 VLESVEFGRGQFQTLLPACPVLEELML 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131156 f-box family protein (524 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
pfam00646	48	pfam00646, F-box, F-box domain	3e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 19 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDS 65
            + +LP+ +L  ILS L     ++  ++S+ W+    +  + K   
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.83
KOG4341	483	consensus F-box protein containing LRR [General fu	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.26
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.23
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.18
KOG4341	483	consensus F-box protein containing LRR [General fu	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.9
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.39
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.3
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.24
PRK15386	426	type III secretion protein GogB; Provisional	97.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.11
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.05
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.85
PRK15386	426	type III secretion protein GogB; Provisional	96.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.37
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.14
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.5
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.46
PLN03150	623	hypothetical protein; Provisional	95.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.33
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.51
PLN03150	623	hypothetical protein; Provisional	94.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	90.56
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.1
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	87.87
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	86.84
PF13013	109	F-box-like_2: F-box-like domain	86.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.37

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.3e-21  Score=170.93  Aligned_cols=279  Identities=22%  Similarity=0.269  Sum_probs=176.5

Q ss_pred             ccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh------ccccceeeeccccccccccCCCCCcchhhhhhHHHHHHH
Q 016087           20 RISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNY   93 (395)
Q Consensus        20 ~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   93 (395)
                      .|..|||||+..||+.|+.+|+++++.|||||+++      |..   ++...+...+                     +.
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p---------------------~~  152 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP---------------------DV  152 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh---------------------hH
Confidence            37789999999999999999999999999999974      544   4444443332                     22


Q ss_pred             HHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEccee
Q 016087           94 IKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLK  173 (395)
Q Consensus        94 v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~  173 (395)
                      ..+++ .     +++..+++--..   ..+ ..+... ...+..++++++|+........+...+..|++|+.|+|.|..
T Consensus       153 l~~l~-~-----rgV~v~Rlar~~---~~~-prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~  221 (419)
T KOG2120|consen  153 LGRLL-S-----RGVIVFRLARSF---MDQ-PRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR  221 (419)
T ss_pred             HHHHH-h-----CCeEEEEcchhh---hcC-chhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc
Confidence            33333 2     245555443111   111 111111 112335789999988766667777777889999999999988


Q ss_pred             ccCCCcc---CCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhcc
Q 016087          174 LESPRSV---KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCII  249 (395)
Q Consensus       174 ~~~~~~~---~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~  249 (395)
                      +..+...   .-.+|+.|+|+.+.- +..++.-++.+|..|..|+++-|...+.. +...                +..-
T Consensus       222 LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~----------------V~hi  284 (419)
T KOG2120|consen  222 LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVA----------------VAHI  284 (419)
T ss_pred             cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHH----------------Hhhh
Confidence            7643222   457788888887776 77777878888888888888887654211 0000                0012


Q ss_pred             CCceeEEEEeCCC----CcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCc
Q 016087          250 AQDVQEVSIQGPL----PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRS  321 (395)
Q Consensus       250 ~p~L~~L~l~~~~----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~  321 (395)
                      .++|+.|+++|+.    ...+......||+|.+|+|+.+..........+.+++.|++|.++.|..+..-    ....|.
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps  364 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS  364 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence            3344444444443    11223345567888888888776333355667788899999999998766431    124588


Q ss_pred             cCEEecccCCCch---hhhhhCCCcceeEEee
Q 016087          322 LKLLEIYDCLRLV---EVKIAASSLSIFKYSG  350 (395)
Q Consensus       322 Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~  350 (395)
                      |.+|++.+|..-.   -+...||+|+.-.-..
T Consensus       365 l~yLdv~g~vsdt~mel~~e~~~~lkin~q~~  396 (419)
T KOG2120|consen  365 LVYLDVFGCVSDTTMELLKEMLSHLKINCQHF  396 (419)
T ss_pred             eEEEEeccccCchHHHHHHHhCccccccceee
Confidence            9999988776543   3335677776544333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.79  E-value=6.7e-21  Score=173.52  Aligned_cols=333  Identities=18%  Similarity=0.185  Sum_probs=224.3

Q ss_pred             CCCHHHHHHHhcCCCcccchhhhhhhhhhhhh------ccccceeeeccccccccccCCCCCcchhhhhhHHHHHHHHHH
Q 016087           23 NLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE   96 (395)
Q Consensus        23 ~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~   96 (395)
                      .||.|++.+|||+|+.+.++|++++|+-|...      |+.+..++|..+.-.                      .+|..
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g----------------------~VV~~  131 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG----------------------GVVEN  131 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC----------------------cceeh
Confidence            49999999999999999999999999999854      777666544444221                      22444


Q ss_pred             HHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHH--HhCCCcEEEEEecCC-CcccccccccCCCCccEEEEccee
Q 016087           97 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYA--LGCNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGLK  173 (395)
Q Consensus        97 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~l~~~~~-~~~~l~~~l~~~~~L~~L~L~~~~  173 (395)
                      ++ .|.++  .++.++++.....      . ++-+...  ..+++++|.+..+.. ....+-..-..|++|++|.|.+|.
T Consensus       132 ~~-~Rcgg--~lk~LSlrG~r~v------~-~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  132 MI-SRCGG--FLKELSLRGCRAV------G-DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS  201 (483)
T ss_pred             Hh-hhhcc--ccccccccccccC------C-cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence            44 44444  8999999876531      1 1112222  347888887765432 222333333358899999998875


Q ss_pred             ccC-----CCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCC--------------------------
Q 016087          174 LES-----PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL--------------------------  221 (395)
Q Consensus       174 ~~~-----~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~--------------------------  221 (395)
                      ...     ..+..|++|++|++++|.- ...++..+..+|..++.+..++|...                          
T Consensus       202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l  281 (483)
T KOG4341|consen  202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL  281 (483)
T ss_pred             hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence            431     1233789999999998887 66677777888888777777766443                          


Q ss_pred             ceEe---eC-CCCCcceEEeccccccchh-----hccCCceeEEEEeCCC---CcccccccccccccceeEecccc-cch
Q 016087          222 KNLE---LS-GLTKLNKFEVCDAEELQRL-----CIIAQDVQEVSIQGPL---PFQCKFNLASCKFLKYLRFALTH-IKD  288 (395)
Q Consensus       222 ~~~~---i~-~~~~L~~L~i~~c~~l~~l-----~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~L~~L~L~~~~-~~~  288 (395)
                      +...   +. .+..|+.|..++|..+...     ...+++|+.+-+.++.   +..+...-.+++.|+.+++..+. +++
T Consensus       282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence            1111   11 2457788888888744443     3367899999998887   23344445678999999998887 556


Q ss_pred             HHHHHHhccCCCccEEEeeCCCCCchhcc--------CCCccCEEecccCCCch----hhhhhCCCcceeEEeeeee---
Q 016087          289 EWLCNQISKFPLLESLLIAGCDDLKSINI--------SSRSLKLLEIYDCLRLV----EVKIAASSLSIFKYSGDVI---  353 (395)
Q Consensus       289 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~--------~~~~Lk~L~L~~~~~l~----~l~~~~~~L~~L~~~~~~~---  353 (395)
                      ..+..+..+||.|++|.++.|..++..++        ....|+.+++++|..++    +....|++||.+++.++..   
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            66888889999999999999987755422        34789999999999887    3346799999999998863   


Q ss_pred             ---ecceeeEEeeccccceecccCCchhhhhhcceee
Q 016087          354 ---SFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQ  387 (395)
Q Consensus       354 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (395)
                         ......++..+.+.||.-+-=+...-..||-+-.
T Consensus       442 ~~i~~~~~~lp~i~v~a~~a~~t~p~~v~~~~~~v~r  478 (483)
T KOG4341|consen  442 EAISRFATHLPNIKVHAYFAPVTPPGFVKGLHQRVCR  478 (483)
T ss_pred             hhhHHHHhhCccceehhhccCCCCccccccchhhccc
Confidence               2222334566667777643222222244444433

>PLN03210 Resistant to P

Probab=99.26  E-value=2.8e-11  Score=131.39  Aligned_cols=189  Identities=20%  Similarity=0.217  Sum_probs=92.5

Q ss_pred             CCCCccEEEEcceec-c-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-CCCCcceEE
Q 016087          160 CSNSIEILTLAGLKL-E-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNKFE  236 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~-~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~~~~L~~L~  236 (395)
                      .+++|+.|+|+++.. . .|....+++|++|+|.+|..- ..+...+..+++|+.|++.+|..+..+... .+++|+.|.
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~  710 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN  710 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence            344444444444321 1 222224455555555554321 112222344555555555555444332221 345666666


Q ss_pred             eccccccchhhccCCceeEEEEeCCCCcccccc------------------------------cccccccceeEeccccc
Q 016087          237 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN------------------------------LASCKFLKYLRFALTHI  286 (395)
Q Consensus       237 i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~L~~L~L~~~~~  286 (395)
                      +++|..+..+....++|++|.+.++....++..                              ...+++|+.|+|++|..
T Consensus       711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~  790 (1153)
T PLN03210        711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS  790 (1153)
T ss_pred             CCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence            666654443333344555555555442111111                              01124566666666543


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCCchhcc--CCCccCEEecccCCCchhhhhhCCCcceeEEee
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG  350 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~--~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~  350 (395)
                      ... +...+..+++|+.|+|.+|..++.+..  .+++|+.|++++|..+..++...++|+.|++++
T Consensus       791 l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        791 LVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             ccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC
Confidence            222 233356778888888888877765543  357788888877766554443333344444333

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.23  E-value=3.1e-11  Score=129.96  Aligned_cols=215  Identities=15%  Similarity=0.080  Sum_probs=99.9

Q ss_pred             CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087          137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~  214 (395)
                      ++++.|++..... ...+|..++ .+++|++|+|++|.+. ......+++|++|+|++|.+... +...+..+++|+.|+
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            5666666643221 124555544 5666777777666553 11112456666666666665321 122245566666666


Q ss_pred             eecCCCCce--EeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCc-------------------------
Q 016087          215 LQLCPGLKN--LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-------------------------  264 (395)
Q Consensus       215 l~~c~~~~~--~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~-------------------------  264 (395)
                      +++|.....  ..+..+++|+.|++++|..   ++......++|+.|+++++...                         
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            666542211  1223445555555555531   1111123445555555444311                         


Q ss_pred             ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecccCCCch---hhhh
Q 016087          265 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV---EVKI  338 (395)
Q Consensus       265 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~~~~l~---~l~~  338 (395)
                      ..+..++.+++|+.|++.++.+.+.. ...+..+++|+.|++++|....   .....+++|+.|+++++....   ....
T Consensus       251 ~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             ccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            12223344445555555444433211 1122344555555555443111   112234566666665443221   2234


Q ss_pred             hCCCcceeEEeeeeee
Q 016087          339 AASSLSIFKYSGDVIS  354 (395)
Q Consensus       339 ~~~~L~~L~~~~~~~~  354 (395)
                      .+++|+.|++.+|.+.
T Consensus       330 ~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        330 SLPRLQVLQLWSNKFS  345 (968)
T ss_pred             cCCCCCEEECcCCCCc
Confidence            5677777777766653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.18  E-value=7.6e-11  Score=126.92  Aligned_cols=214  Identities=18%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      +++++|++..... ...+|..+..+++|++|+|++|.+.  .|.. ..+++|++|+|++|.+... +...+..+++|+.|
T Consensus       140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence            3455555433221 1244555566667777777766543  2222 2566677777766665321 12234556666666


Q ss_pred             eeecCCCCceE--eeCCCCCcceEEecccc---ccchhhccCCceeEEEEeCCCC-cccccccccccccceeEecccccc
Q 016087          214 SLQLCPGLKNL--ELSGLTKLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       214 ~l~~c~~~~~~--~i~~~~~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                      ++.+|......  .+..+++|++|++.+|.   .++......++|++|.++++.. ...+..+..+++|++|++++|.+.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            66666432111  23445667777776664   1121222456666666665542 122333445566666666665544


Q ss_pred             hHHHHHHhccCCCccEEEeeCCCCCchh---ccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeee
Q 016087          288 DEWLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~~---~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~  353 (395)
                      .. +...+..+++|+.|++.++.....+   ...+++|+.|+++++.-.   +.....+++|+.|++++|.+
T Consensus       298 ~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        298 GE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             cC-CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence            32 2233445566666666554322111   223455555555544321   12223345555555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.13  E-value=4.4e-12  Score=116.44  Aligned_cols=216  Identities=23%  Similarity=0.286  Sum_probs=144.1

Q ss_pred             CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCC-----CccCCCCCcEEEeeeeec-ChHHHHHHHcCCCC
Q 016087          137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESP-----RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPL  209 (395)
Q Consensus       137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~-----~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~  209 (395)
                      ..++++.+..+ +.+...+-.....|+++++|.+.+|.....     -+..|++|++|+|..|.. ++..++.+..+||+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            57888888764 344556666667899999999999874421     223799999999999766 88899999999999


Q ss_pred             ccEEeeecCCCCce--E--eeCCCCCcceEEeccccc--cchh---hccCCceeEEEEeCCC---Ccccccccccccccc
Q 016087          210 IEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEE--LQRL---CIIAQDVQEVSIQGPL---PFQCKFNLASCKFLK  277 (395)
Q Consensus       210 Le~L~l~~c~~~~~--~--~i~~~~~L~~L~i~~c~~--l~~l---~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~L~  277 (395)
                      |++|+++.|+.+..  +  ...++..++.+...+|.+  +..+   ...++-+..+++..+.   +.++...-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            99999999987633  2  223556677777778862  2222   2344555666644443   111122223466677


Q ss_pred             eeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCc-----hhccCCCccCEEecccCCCch-----hhhhhCCCccee
Q 016087          278 YLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLK-----SINISSRSLKLLEIYDCLRLV-----EVKIAASSLSIF  346 (395)
Q Consensus       278 ~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~Lk~L~L~~~~~l~-----~l~~~~~~L~~L  346 (395)
                      .|..+++. +++..+..+..++++|+.|.+..|..+.     .+...++.|+.+++..|....     ++..+||.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            77776654 6666677777777777777777776553     344456777777776654322     344567777777


Q ss_pred             EEeeee
Q 016087          347 KYSGDV  352 (395)
Q Consensus       347 ~~~~~~  352 (395)
                      .+++|.
T Consensus       378 slshce  383 (483)
T KOG4341|consen  378 SLSHCE  383 (483)
T ss_pred             Chhhhh
Confidence            777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4.5e-11  Score=110.48  Aligned_cols=200  Identities=13%  Similarity=0.075  Sum_probs=147.2

Q ss_pred             cCCCCccEEEEcceeccCCC----ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCC---ceEeeCCCC
Q 016087          159 LCSNSIEILTLAGLKLESPR----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLT  230 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~~~~----~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~---~~~~i~~~~  230 (395)
                      .+.++|+...|.++.+..+.    ...||+++.|+|+.+-+ +...+.+++...|+||.|+++.+...   .+.....++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            45678889999988887433    23899999999999999 88899999999999999999998543   222233568


Q ss_pred             CcceEEecccc----ccchhhccCCceeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEE
Q 016087          231 KLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL  305 (395)
Q Consensus       231 ~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~  305 (395)
                      .|+.|.++.|.    .+..+...+|+|+.|++.++.. .........+..|+.|+|+++.+.+..-......+|+|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            99999999996    5667778999999999988742 111223445789999999999866655555678899999999


Q ss_pred             eeCCC--CCc-----h--hccCCCccCEEecccCCC--chhh--hhhCCCcceeEEeeeeeeccee
Q 016087          306 IAGCD--DLK-----S--INISSRSLKLLEIYDCLR--LVEV--KIAASSLSIFKYSGDVISFQLG  358 (395)
Q Consensus       306 L~~~~--~l~-----~--~~~~~~~Lk~L~L~~~~~--l~~l--~~~~~~L~~L~~~~~~~~~~~~  358 (395)
                      ++.+.  .+.     .  ....+|+|++|.+....-  ..++  ....++|..|.+-++.++.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence            98863  221     1  123469999999974322  2322  2457778888877776655544

>PLN03210 Resistant to P

Probab=99.03  E-value=8.1e-10  Score=120.14  Aligned_cols=210  Identities=19%  Similarity=0.277  Sum_probs=115.5

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      .+++.+++..+.. ...+|. +..+++|+.|+|++|...  .|... .+++|+.|++++|..-. .+... .+++.|+.|
T Consensus       634 ~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~-i~l~sL~~L  709 (1153)
T PLN03210        634 TGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTG-INLKSLYRL  709 (1153)
T ss_pred             CCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCc-CCCCCCCEE
Confidence            5777777754321 234443 556778888888877532  33332 67778888887765310 11110 146677777


Q ss_pred             eeecCCCCceEeeC---------------------CCCCcceEEeccccc---------cch-hhccCCceeEEEEeCCC
Q 016087          214 SLQLCPGLKNLELS---------------------GLTKLNKFEVCDAEE---------LQR-LCIIAQDVQEVSIQGPL  262 (395)
Q Consensus       214 ~l~~c~~~~~~~i~---------------------~~~~L~~L~i~~c~~---------l~~-l~~~~p~L~~L~l~~~~  262 (395)
                      ++++|..+....-.                     .+++|+.|.+..+..         +.. .....++|+.|.++++.
T Consensus       710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence            77777543221100                     122333333333210         000 01124677788887765


Q ss_pred             -CcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc-----------------------cC
Q 016087          263 -PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-----------------------IS  318 (395)
Q Consensus       263 -~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-----------------------~~  318 (395)
                       ...++..++.+++|+.|++.+|..... +.. ...+++|+.|++++|..+..+.                       ..
T Consensus       790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~  867 (1153)
T PLN03210        790 SLVELPSSIQNLHKLEHLEIENCINLET-LPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK  867 (1153)
T ss_pred             CccccChhhhCCCCCCEEECCCCCCcCe-eCC-CCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence             223455567788888888877642211 111 1146777777777775543321                       23


Q ss_pred             CCccCEEecccCCCchhhh---hhCCCcceeEEeeee
Q 016087          319 SRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV  352 (395)
Q Consensus       319 ~~~Lk~L~L~~~~~l~~l~---~~~~~L~~L~~~~~~  352 (395)
                      +++|+.|+|++|.++..++   ..+++|+.+++++|.
T Consensus       868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            4677788887777777554   346677777777774

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.97  E-value=3.9e-10  Score=107.86  Aligned_cols=244  Identities=16%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceeccC--C-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLES--P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~~--~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +.++.++|+-...  ..+|..-+ .-.++++|+|+++.+..  . ....+.+|.+|.|+.++++.-. ...+.+.|+|+.
T Consensus       149 ~alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  149 PALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES  225 (873)
T ss_pred             hhhhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence            4677777754222  22222222 23567888887776651  1 1225566777777777763211 223455666666


Q ss_pred             EeeecCCCC--ceEeeCCCCCcceEEecccc-------------ccchh--------------hccCCceeEEEEeCCCC
Q 016087          213 LSLQLCPGL--KNLELSGLTKLNKFEVCDAE-------------ELQRL--------------CIIAQDVQEVSIQGPLP  263 (395)
Q Consensus       213 L~l~~c~~~--~~~~i~~~~~L~~L~i~~c~-------------~l~~l--------------~~~~p~L~~L~l~~~~~  263 (395)
                      |++..+..-  ..+...++++|+.|.+..+.             ++..+              ......|+.|+++.+..
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            666655321  12223334444444433321             11111              01223344444444432


Q ss_pred             ccccc-ccccccccceeEecccccch-----------------------HHHHHHhccCCCccEEEeeCCC---CCch--
Q 016087          264 FQCKF-NLASCKFLKYLRFALTHIKD-----------------------EWLCNQISKFPLLESLLIAGCD---DLKS--  314 (395)
Q Consensus       264 ~~~~~-~~~~~~~L~~L~L~~~~~~~-----------------------~~~~~l~~~~~~L~~L~L~~~~---~l~~--  314 (395)
                      ..+.+ .++.+++|+.|+|++|.++.                       ..-...+.++.+|++|+|+++.   -+++  
T Consensus       306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence            22222 24556666666666655432                       1112334455666666666542   1111  


Q ss_pred             -hccCCCccCEEecccC--CCch-hhhhhCCCcceeEEeeeeeecceeeE--Eeecccccee----cccCCchhhhhhc
Q 016087          315 -INISSRSLKLLEIYDC--LRLV-EVKIAASSLSIFKYSGDVISFQLGAI--TFSKSHLLFQ----TENSSSEWYTEHF  383 (395)
Q Consensus       315 -~~~~~~~Lk~L~L~~~--~~l~-~l~~~~~~L~~L~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~  383 (395)
                       ....++.|+.|.+.+.  ..++ ....+.++||.|++.+|.+...+...  ++.-+++.+.    .=+|.=+|..+-.
T Consensus       386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl  464 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL  464 (873)
T ss_pred             hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence             1123578888888653  2222 23366899999999999874333322  2222233332    2347777876554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.94  E-value=1.4e-09  Score=101.88  Aligned_cols=193  Identities=21%  Similarity=0.127  Sum_probs=105.3

Q ss_pred             CCCcEEEEEecCCC-----cccccccccCCCCccEEEEcceecc--CCCc-cCC---CCCcEEEeeeeecChHHHHH---
Q 016087          137 CNVKELSLELLGNP-----RFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKL---SSLTKLFLMRVDATDLVLQS---  202 (395)
Q Consensus       137 ~~l~~L~l~~~~~~-----~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~---~~Lk~L~L~~~~~~~~~l~~---  202 (395)
                      ++++++++......     ...++..+..+++|++|++++|.+.  .+.. ..+   ++|++|++++|.+++.....   
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            45777777543221     1223334456778888888887764  1111 112   55888888888885444333   


Q ss_pred             HHcCC-CCccEEeeecCCCCce----E--eeCCCCCcceEEecccc----ccchhh---ccCCceeEEEEeCCCCcc---
Q 016087          203 LLIGC-PLIEYLSLQLCPGLKN----L--ELSGLTKLNKFEVCDAE----ELQRLC---IIAQDVQEVSIQGPLPFQ---  265 (395)
Q Consensus       203 l~~~~-p~Le~L~l~~c~~~~~----~--~i~~~~~L~~L~i~~c~----~l~~l~---~~~p~L~~L~l~~~~~~~---  265 (395)
                      .+..+ ++|+.|++.+|.....    +  .+..+++|+.|++.+|.    .+..+.   ...++|+.|+++++...+   
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            33445 7888888888853310    0  12234567777777764    111111   133577777776664221   


Q ss_pred             --cccccccccccceeEecccccchHHHHHHhccC----CCccEEEeeCCCCC----chh---ccCCCccCEEeccc
Q 016087          266 --CKFNLASCKFLKYLRFALTHIKDEWLCNQISKF----PLLESLLIAGCDDL----KSI---NISSRSLKLLEIYD  329 (395)
Q Consensus       266 --~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~----~~L~~L~L~~~~~l----~~~---~~~~~~Lk~L~L~~  329 (395)
                        +...+..+++|++|++++|.+++..+..+...+    +.|++|++.+|..-    ..+   ....++|+++++++
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence              112244556677777777766655544444433    56777777666421    111   11235666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=1.2e-09  Score=102.39  Aligned_cols=219  Identities=20%  Similarity=0.092  Sum_probs=145.4

Q ss_pred             CCCcEEEEEecCCC---cccccccccCCCCccEEEEcceeccC-CC--------ccCCCCCcEEEeeeeecCh---HHHH
Q 016087          137 CNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLES-PR--------SVKLSSLTKLFLMRVDATD---LVLQ  201 (395)
Q Consensus       137 ~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~~-~~--------~~~~~~Lk~L~L~~~~~~~---~~l~  201 (395)
                      .+++.+++..+...   ...++..+...++|++|+++++.+.. +.        ...+++|+.|+++++.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            46999999775542   23455556677889999998876541 11        1157899999999999842   2344


Q ss_pred             HHHcCCCCccEEeeecCCCCc-e-----EeeCCC-CCcceEEecccc-c---cchh---hccCCceeEEEEeCCCCcc--
Q 016087          202 SLLIGCPLIEYLSLQLCPGLK-N-----LELSGL-TKLNKFEVCDAE-E---LQRL---CIIAQDVQEVSIQGPLPFQ--  265 (395)
Q Consensus       202 ~l~~~~p~Le~L~l~~c~~~~-~-----~~i~~~-~~L~~L~i~~c~-~---l~~l---~~~~p~L~~L~l~~~~~~~--  265 (395)
                      .+... ++|++|++++|.... .     ..+..+ ++|+.|++.+|. .   ...+   ...+++|++|+++++....  
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            44455 779999999986431 0     012344 799999999986 1   1122   1245789999998876321  


Q ss_pred             ---cccccccccccceeEecccccchHHH---HHHhccCCCccEEEeeCCCCCc----hhcc----CCCccCEEecccCC
Q 016087          266 ---CKFNLASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLIAGCDDLK----SINI----SSRSLKLLEIYDCL  331 (395)
Q Consensus       266 ---~~~~~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~l~----~~~~----~~~~Lk~L~L~~~~  331 (395)
                         +...+...++|++|++++|.+++...   ...+..+++|++|++++|.--.    .+..    ..+.|++|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence               11123445799999999998776543   3455678899999999975221    1222    23799999998774


Q ss_pred             Cc----h---hhhhhCCCcceeEEeeeeeecc
Q 016087          332 RL----V---EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       332 ~l----~---~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      --    .   .....+++|+.|++++|.++.+
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            31    1   2234467899999999987655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-10  Score=101.73  Aligned_cols=168  Identities=17%  Similarity=0.162  Sum_probs=105.7

Q ss_pred             CcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe--eCCCCCcceEEeccccccchh-----hccCCceeEEE
Q 016087          185 LTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRL-----CIIAQDVQEVS  257 (395)
Q Consensus       185 Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~--i~~~~~L~~L~i~~c~~l~~l-----~~~~p~L~~L~  257 (395)
                      |++|+|+...++...+..+++.|.+|+.|++.+..--+.+.  +..-.+|+.|+++.|.++...     .-.+..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            44445554444445555555555555555555543222111  111135555555555533332     22566677777


Q ss_pred             EeCCCCcc--cccc-cccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecc
Q 016087          258 IQGPLPFQ--CKFN-LASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIY  328 (395)
Q Consensus       258 l~~~~~~~--~~~~-~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~  328 (395)
                      ++.|....  +.+. -..-++|+.|+|+|+.  +....+..+...||+|.+|+|++|..++..    ...++.|++|+++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            76665211  2222 2235899999999875  555667778899999999999999888652    2357999999999


Q ss_pred             cCCCch--hhh--hhCCCcceeEEeeee
Q 016087          329 DCLRLV--EVK--IAASSLSIFKYSGDV  352 (395)
Q Consensus       329 ~~~~l~--~l~--~~~~~L~~L~~~~~~  352 (395)
                      .|..+.  .+.  ...|.|.+|++.|+-
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEecccc
Confidence            998887  222  568999999999884

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.81  E-value=2e-09  Score=70.18  Aligned_cols=35  Identities=34%  Similarity=0.637  Sum_probs=30.8

Q ss_pred             cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087           21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   55 (395)
Q Consensus        21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw   55 (395)
                      |..||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.73  E-value=1.2e-10  Score=112.16  Aligned_cols=213  Identities=17%  Similarity=0.144  Sum_probs=117.8

Q ss_pred             CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      .+.-.|.|+.  +...++|..++ +...|-.|+|+++++.  +|....+.+|++|.|+++.+....+.. +.+...|+.|
T Consensus       126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL  202 (1255)
T KOG0444|consen  126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL  202 (1255)
T ss_pred             cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence            4555555543  44566676665 4667778888888877  444457888888888888775555544 3345566677


Q ss_pred             eeecCCCC-ceE--eeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCC-----------------------cc
Q 016087          214 SLQLCPGL-KNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLP-----------------------FQ  265 (395)
Q Consensus       214 ~l~~c~~~-~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~-----------------------~~  265 (395)
                      ++++...- .++  .+.++.+|+.++++.+.  .++......++|+.|.++++..                       ..
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~  282 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV  282 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence            77664321 111  12234455555555332  2222223445555555555443                       22


Q ss_pred             cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEecccCC--CchhhhhhCC
Q 016087          266 CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCL--RLVEVKIAAS  341 (395)
Q Consensus       266 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~  341 (395)
                      ++..+..++.|+.|.+..|+++-+.+..-++++.+|+.+..+++.  .+..-...|++|+.|.|++..  .+++-+.-++
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~  362 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLP  362 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcC
Confidence            333334455555555555555444444444555555555555432  112223457888888885433  2334445678


Q ss_pred             CcceeEEeeee
Q 016087          342 SLSIFKYSGDV  352 (395)
Q Consensus       342 ~L~~L~~~~~~  352 (395)
                      .|+.|++..|+
T Consensus       363 ~l~vLDlreNp  373 (1255)
T KOG0444|consen  363 DLKVLDLRENP  373 (1255)
T ss_pred             CcceeeccCCc
Confidence            88888888775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.64  E-value=6.5e-10  Score=107.14  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             cCCCcccccccccCCCCccEEEEcceecc-CCCcc--CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC--
Q 016087          147 LGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV--KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL--  221 (395)
Q Consensus       147 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~--~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~--  221 (395)
                      ..+...+.|..+-.-+++..|+|+++.+. .|...  ++..|-.|+|+.+++.  .+..-+....+|++|.+++++..  
T Consensus       111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHH
Confidence            44556677888878899999999999887 44333  7788888999999872  22333455678999999998643  


Q ss_pred             ceEeeCCCCCcceEEecccc----ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhcc
Q 016087          222 KNLELSGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISK  297 (395)
Q Consensus       222 ~~~~i~~~~~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  297 (395)
                      +--.+.++.+|..|.+++..    +++.-.-...||..++++.+.-.-++-.+-.+++|+.|+|++|.++.-.  .-...
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~  266 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGE  266 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHH
Confidence            22244555667777777654    3333333667888899988775445656677899999999998876311  11112


Q ss_pred             CCCccEEEeeC
Q 016087          298 FPLLESLLIAG  308 (395)
Q Consensus       298 ~~~L~~L~L~~  308 (395)
                      --+|++|+++.
T Consensus       267 W~~lEtLNlSr  277 (1255)
T KOG0444|consen  267 WENLETLNLSR  277 (1255)
T ss_pred             Hhhhhhhcccc
Confidence            24566666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1e-08  Score=95.11  Aligned_cols=172  Identities=19%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCC----CccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087          137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESP----RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le  211 (395)
                      ++++.|+|+.. -..+..+-..+.++++|+.|+|+.+.+..+    ....+++||.|.|+.|.++.+++.+++..||.|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            57777777541 122344444455689999999998887632    1237999999999999999999999999999999


Q ss_pred             EEeeecCCCCc--eEeeCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCCCccccc-------ccccccccce
Q 016087          212 YLSLQLCPGLK--NLELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQCKF-------NLASCKFLKY  278 (395)
Q Consensus       212 ~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~~~~-------~~~~~~~L~~  278 (395)
                      .|.+.++....  .....-+..|+.|+++++.  .+..  .....|.|+-|.++.+...++..       ....+++|+.
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            99999985431  1122234589999999886  2222  22367888888887766332211       2355789999


Q ss_pred             eEecccccchHHHHHHhccCCCccEEEeeC
Q 016087          279 LRFALTHIKDEWLCNQISKFPLLESLLIAG  308 (395)
Q Consensus       279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  308 (395)
                      |++..|.+.+.....-+...++|++|.+..
T Consensus       306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  306 LNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             eecccCccccccccchhhccchhhhhhccc
Confidence            999999887665555566778888887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.47  E-value=4.3e-08  Score=94.17  Aligned_cols=195  Identities=15%  Similarity=0.116  Sum_probs=120.4

Q ss_pred             cccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC--ceEeeCCCCCc
Q 016087          157 IILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL--KNLELSGLTKL  232 (395)
Q Consensus       157 ~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~--~~~~i~~~~~L  232 (395)
                      .+.+.++|+.+++..+.+. .|... ...+|++|+|.++.++.-.-+ -++..|.||.|+++.+...  .......-+++
T Consensus        97 ~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   97 FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            3456788888888887776 44444 456688888888887221111 2345678888888887432  11122222478


Q ss_pred             ceEEeccccccchhhc----cCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087          233 NKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  307 (395)
Q Consensus       233 ~~L~i~~c~~l~~l~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  307 (395)
                      ++|+++++. +..+..    ...+|..|.++.+....++. .+..++.|+.|+|..|.+.-.. .-.+.+++.|+.|.+.
T Consensus       176 ~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  176 KKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             eEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhh
Confidence            888888764 222211    33478888888776444443 4666888888888777654322 2245778888888876


Q ss_pred             CCC--CCch-hccCCCccCEEecccCCCchhhh----hhCCCcceeEEeeeeeec
Q 016087          308 GCD--DLKS-INISSRSLKLLEIYDCLRLVEVK----IAASSLSIFKYSGDVISF  355 (395)
Q Consensus       308 ~~~--~l~~-~~~~~~~Lk~L~L~~~~~l~~l~----~~~~~L~~L~~~~~~~~~  355 (395)
                      .+.  .+++ ..-.+.++++|+|+.. .+.++.    .++..|+.|+++.|.+..
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             hcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhhe
Confidence            643  2222 2234578888888632 333333    457788888888887633

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.45  E-value=5.9e-07  Score=92.21  Aligned_cols=18  Identities=28%  Similarity=0.255  Sum_probs=13.5

Q ss_pred             hhCCCcceeEEeeeeeec
Q 016087          338 IAASSLSIFKYSGDVISF  355 (395)
Q Consensus       338 ~~~~~L~~L~~~~~~~~~  355 (395)
                      .++++|+.|++++|+++.
T Consensus       442 ~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhccCCCeEECCCCCCCc
Confidence            457788888888887653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.44  E-value=9.7e-07  Score=90.68  Aligned_cols=197  Identities=20%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+-..|++...  ....+|..+.  ++|+.|.+.++.+. .|.  ..++|++|+|++|.++.  +.   ...++|+.|++
T Consensus       201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--cc---Ccccccceeec
Confidence            34444544332  3345665543  35677777766554 222  24667777777766531  11   11345666666


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccc----------------c-ccccccce
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN----------------L-ASCKFLKY  278 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~----------------~-~~~~~L~~  278 (395)
                      ..|... .+.. ..++|+.|.+.++. +..+....|+|+.|+++++....++..                + ....+|+.
T Consensus       270 s~N~L~-~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~  346 (788)
T PRK15387        270 FSNPLT-HLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE  346 (788)
T ss_pred             cCCchh-hhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence            555311 1100 11244444444442 222222234444444444432111110                0 01135666


Q ss_pred             eEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeee
Q 016087          279 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                      |+|++|.++.     +....++|+.|+++++. +..+.....+|+.|+++++ .+..++...++|+.|++++|.+.
T Consensus       347 LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        347 LSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLT  415 (788)
T ss_pred             EecCCCccCC-----CCCCCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCC
Confidence            6666665442     11123455566555432 2222222346677777543 33344444456677777766653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.39  E-value=2.3e-07  Score=84.01  Aligned_cols=174  Identities=21%  Similarity=0.181  Sum_probs=118.1

Q ss_pred             CCCCCcEEEeeeeec---ChHHHHHHHcCCCCccEEeeecCCCC---------------ceEeeCCCCCcceEEecccc-
Q 016087          181 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGL---------------KNLELSGLTKLNKFEVCDAE-  241 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~---------------~~~~i~~~~~L~~L~i~~c~-  241 (395)
                      .+|+|++|+|++|-+   ....+..++++|..|+.|.|.+|...               ..-.+.+.++|+.+....+. 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            456777777777766   34467788888999999999888532               01123455799999888775 


Q ss_pred             -c-----cchhhccCCceeEEEEeCCCCcc--c---ccccccccccceeEecccccchH---HHHHHhccCCCccEEEee
Q 016087          242 -E-----LQRLCIIAQDVQEVSIQGPLPFQ--C---KFNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIA  307 (395)
Q Consensus       242 -~-----l~~l~~~~p~L~~L~l~~~~~~~--~---~~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~  307 (395)
                       +     +.......|.|+.+.+..+...+  +   .-.+..|++|+.|+|..|.++..   .+...++.+|+|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence             1     12222356899999987765321  2   22367799999999999887654   344556778899999999


Q ss_pred             CCCCC--------chhccCCCccCEEecccCCC-ch------hhhhhCCCcceeEEeeeeee
Q 016087          308 GCDDL--------KSINISSRSLKLLEIYDCLR-LV------EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       308 ~~~~l--------~~~~~~~~~Lk~L~L~~~~~-l~------~l~~~~~~L~~L~~~~~~~~  354 (395)
                      +|-.-        ..+....|+|+.|.+.++.- ..      ......|.|+.|++.||...
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            98421        22334568999999875431 11      11134799999999999873

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.37  E-value=8.8e-08  Score=62.66  Aligned_cols=37  Identities=30%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhccc
Q 016087           21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT   57 (395)
Q Consensus        21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~   57 (395)
                      |.+||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.31  E-value=5.1e-07  Score=92.95  Aligned_cols=200  Identities=16%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++.|++...  ....+|..+.  ++|+.|++++|.+. .|.. -.++|+.|+|++|.+..  +...+  ...|+.|++
T Consensus       199 ~~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDL  269 (754)
T ss_pred             cCCcEEEecCC--CCCcCChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence            46677776543  2345565443  47777777777665 2222 13467777777776621  11111  235666666


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhc----------------------cCCceeEEEEeCCCCcccccccccc
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI----------------------IAQDVQEVSIQGPLPFQCKFNLASC  273 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~----------------------~~p~L~~L~l~~~~~~~~~~~~~~~  273 (395)
                      ++|. +..+.-.-.++|+.|++++|. +..+..                      ..++|++|.++++....++..  ..
T Consensus       270 s~N~-L~~LP~~l~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~--l~  345 (754)
T PRK15370        270 FHNK-ISCLPENLPEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS--LP  345 (754)
T ss_pred             cCCc-cCccccccCCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh--hc
Confidence            6553 211111112356666666553 211111                      224566666655542222211  13


Q ss_pred             cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCC-CccCEEecccCC--Cch----hhhhhCCCccee
Q 016087          274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLV----EVKIAASSLSIF  346 (395)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~~~~--~l~----~l~~~~~~L~~L  346 (395)
                      ++|+.|++++|.++.  +...  ..++|+.|+|++|. +..+.... +.|+.|+++++.  .++    .+...++.+..|
T Consensus       346 ~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        346 PELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             CcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEE
Confidence            567777777766542  1111  12567777777664 33332222 356667766532  111    222345788888


Q ss_pred             EEeeeeee
Q 016087          347 KYSGDVIS  354 (395)
Q Consensus       347 ~~~~~~~~  354 (395)
                      ++.+|+++
T Consensus       421 ~L~~Npls  428 (754)
T PRK15370        421 IVEYNPFS  428 (754)
T ss_pred             EeeCCCcc
Confidence            89888864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.30  E-value=2e-07  Score=92.42  Aligned_cols=210  Identities=24%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             CCCcEEEEEecCC-CcccccccccCCCCccEEEEcce-ecc-------CCCccCCCCCcEEEeeeee-cChHHHHHHHcC
Q 016087          137 CNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGL-KLE-------SPRSVKLSSLTKLFLMRVD-ATDLVLQSLLIG  206 (395)
Q Consensus       137 ~~l~~L~l~~~~~-~~~~l~~~l~~~~~L~~L~L~~~-~~~-------~~~~~~~~~Lk~L~L~~~~-~~~~~l~~l~~~  206 (395)
                      ++++.+.+..+.. ....+-.....|++|+.|++++| ...       ......+++|+.|++.++. +++..+..+...
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            6777777655332 22223345567889999999873 221       1122367999999999998 588889988888


Q ss_pred             CCCccEEeeecCCCCceEee----CCCCCcceEEeccccc-----cchhhccCCceeEEEEeCCCC--------------
Q 016087          207 CPLIEYLSLQLCPGLKNLEL----SGLTKLNKFEVCDAEE-----LQRLCIIAQDVQEVSIQGPLP--------------  263 (395)
Q Consensus       207 ~p~Le~L~l~~c~~~~~~~i----~~~~~L~~L~i~~c~~-----l~~l~~~~p~L~~L~l~~~~~--------------  263 (395)
                      ||+|+.|.+.+|..++...+    ..+++|++|++..|..     +..+...+|+|+.|.+.+...              
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~  347 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT  347 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence            99999999888876432222    2567899999998873     333344677777766544321              


Q ss_pred             ----cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCch--hhh
Q 016087          264 ----FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLV--EVK  337 (395)
Q Consensus       264 ----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~--~l~  337 (395)
                          .........+++|+++.+..+...+.....++.+||+|. ..+..+      ...+.+++.|.+..|....  .+.
T Consensus       348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t~~~l~  420 (482)
T KOG1947|consen  348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVTDKGLR  420 (482)
T ss_pred             cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCccccccchH
Confidence                011122344666666666665544434344555666552 221111      1112337788887776554  111


Q ss_pred             ---hhCCCcceeEEeeeee
Q 016087          338 ---IAASSLSIFKYSGDVI  353 (395)
Q Consensus       338 ---~~~~~L~~L~~~~~~~  353 (395)
                         ..|.+++.+++.++..
T Consensus       421 ~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  421 CLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHhhhhhccccCCccCccc
Confidence               2277788888877754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.30  E-value=1.8e-06  Score=89.07  Aligned_cols=138  Identities=16%  Similarity=0.154  Sum_probs=84.7

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+...+++..  .....+|..+.  ++|+.|+|+++.+. .|.. .+++|++|++++|.++.  +...+  .+.|+.|++
T Consensus       178 ~~~~~L~L~~--~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKI--LGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCC--CCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence            4555666643  33456676543  57999999998876 3332 34799999999998742  11111  357999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                      ++|... .+...-..+|+.|+++++ .+..+.. ..++|+.|+++++....++..+  .++|+.|++++|.++
T Consensus       249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT  317 (754)
T ss_pred             cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc
Confidence            998543 222122348999999866 4444432 2358999999987633222211  135566666555443

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.26  E-value=5.5e-07  Score=56.57  Aligned_cols=34  Identities=38%  Similarity=0.648  Sum_probs=31.3

Q ss_pred             CCHHHHHHHhcCCCcccchhhhhhhhhhhhhccc
Q 016087           24 LPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT   57 (395)
Q Consensus        24 LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~   57 (395)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.20  E-value=1.8e-06  Score=72.85  Aligned_cols=125  Identities=20%  Similarity=0.118  Sum_probs=38.0

Q ss_pred             CCCccEEEEcceeccCCCcc--CCCCCcEEEeeeeecC-hHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087          161 SNSIEILTLAGLKLESPRSV--KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  237 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~~~~~~--~~~~Lk~L~L~~~~~~-~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i  237 (395)
                      +.+++.|+|.++.+..-...  .+.+|+.|+|++|.+. -++    +..++.|++|+++++...                
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~----------------   77 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRIS----------------   77 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS-------------------
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCC----------------
Confidence            34556666666655411111  3556666666666552 111    222444455555444211                


Q ss_pred             ccccccch-hhccCCceeEEEEeCCCCccc--ccccccccccceeEecccccchH--HHHHHhccCCCccEEEeeCC
Q 016087          238 CDAEELQR-LCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       238 ~~c~~l~~-l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L~L~~~  309 (395)
                          .+.. +...+|+|+.|.++++....+  ...+..+++|+.|+|.+|.+...  --..++..+|+|+.|+-...
T Consensus        78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   78 ----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             ----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             ----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence                1211 222467777777776653221  22355677888888877765432  22345567788877765543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.19  E-value=2.2e-07  Score=93.74  Aligned_cols=215  Identities=20%  Similarity=0.180  Sum_probs=114.2

Q ss_pred             HHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecCh--HH-----
Q 016087          129 QCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATD--LV-----  199 (395)
Q Consensus       129 ~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~--~~-----  199 (395)
                      .|+..+  .+++.+.....  ....+|..++...+|+.|....|.+. .+ ....+..|++|+|..+.+..  +.     
T Consensus       258 ~wi~~~--~nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~  333 (1081)
T KOG0618|consen  258 EWIGAC--ANLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL  333 (1081)
T ss_pred             HHHHhc--ccceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhh
Confidence            454443  24444444321  12344444444455555555555544 22 23358888888888887721  11     


Q ss_pred             ---HHHHHcCCCCcc--------------EEeeecCCCC-ceE-eeCCCCCcceEEecccc--ccchhh-ccCCceeEEE
Q 016087          200 ---LQSLLIGCPLIE--------------YLSLQLCPGL-KNL-ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVS  257 (395)
Q Consensus       200 ---l~~l~~~~p~Le--------------~L~l~~c~~~-~~~-~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~  257 (395)
                         +..+-..+..|+              .|.+.++.-- ..+ .+.+...||.|.++.+.  .++.-. ...+.|+.|.
T Consensus       334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~  413 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN  413 (1081)
T ss_pred             hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence               111111222222              2222222111 001 12345688888888773  233332 2667888888


Q ss_pred             EeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhcc----CCCccCEEecccCCCc
Q 016087          258 IQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCLRL  333 (395)
Q Consensus       258 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~----~~~~Lk~L~L~~~~~l  333 (395)
                      ++|+.-..++..+..++.|++|...+|.+.  .+. -+..++.|+.++++ |.++..+..    +-|+||+|++++...+
T Consensus       414 LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  414 LSGNKLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccchhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence            888875555666677788888888777654  222 34567888888887 444443322    2278888888866543


Q ss_pred             h---hhhhhCCCcceeEEeee
Q 016087          334 V---EVKIAASSLSIFKYSGD  351 (395)
Q Consensus       334 ~---~l~~~~~~L~~L~~~~~  351 (395)
                      .   +....+.++..+++.-+
T Consensus       490 ~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  490 VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhHHhhhhhheecccC
Confidence            3   22334555555554433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.13  E-value=1.3e-06  Score=79.28  Aligned_cols=62  Identities=18%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             cCCceeEEEEeCCCCc-----ccccccccccccceeEecccccchHHHH----HHhccCCCccEEEeeCCC
Q 016087          249 IAQDVQEVSIQGPLPF-----QCKFNLASCKFLKYLRFALTHIKDEWLC----NQISKFPLLESLLIAGCD  310 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~  310 (395)
                      .+|+|+.|++.++...     .+...++..++|+.|+++.|.+.+....    .+-...|+|+.|.+.++.
T Consensus       211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            4556666665554311     0111234455666666666554443222    222335666666666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.05  E-value=8e-07  Score=88.05  Aligned_cols=129  Identities=23%  Similarity=0.246  Sum_probs=89.2

Q ss_pred             CCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecC-CCCce------EeeCCCCCcceEEeccccc-----cchhh
Q 016087          181 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC-PGLKN------LELSGLTKLNKFEVCDAEE-----LQRLC  247 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c-~~~~~------~~i~~~~~L~~L~i~~c~~-----l~~l~  247 (395)
                      .+++|+.|.+..+.. ++..+..+...||+|++|++.+| .....      .....+++|++|+++.|..     +..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478888888888866 66667888888999999999873 22211      1123457888888888763     33333


Q ss_pred             ccCCceeEEEEeCCCC---cccccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCC
Q 016087          248 IIAQDVQEVSIQGPLP---FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       248 ~~~p~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ..+|+|+.|.+.++..   ..+......+++|++|+++++. +++..+..+...|++|+.|.+..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            4578888888766652   2233445668889999998876 556667777777888888765554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.04  E-value=1.8e-06  Score=72.81  Aligned_cols=78  Identities=19%  Similarity=0.148  Sum_probs=25.3

Q ss_pred             cccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchh--ccCCCccCEEecccCC-----Cch-hhhhhCC
Q 016087          272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSI--NISSRSLKLLEIYDCL-----RLV-EVKIAAS  341 (395)
Q Consensus       272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~--~~~~~~Lk~L~L~~~~-----~l~-~l~~~~~  341 (395)
                      .++.|+.|++++|.++.-. ..+...+|+|++|+++++.  ++..+  ...+|+|+.|+|.+..     ..- .+...+|
T Consensus        62 ~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP  140 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP  140 (175)
T ss_dssp             --TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred             ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence            3455555555555544311 1122345566666555532  11111  1235666666665322     111 3346688


Q ss_pred             CcceeEEee
Q 016087          342 SLSIFKYSG  350 (395)
Q Consensus       342 ~L~~L~~~~  350 (395)
                      +|+.|+-..
T Consensus       141 ~Lk~LD~~~  149 (175)
T PF14580_consen  141 SLKVLDGQD  149 (175)
T ss_dssp             T-SEETTEE
T ss_pred             hhheeCCEE
Confidence            888877544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=3.5e-06  Score=86.06  Aligned_cols=124  Identities=18%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             CCcceEEecccc-----ccchhhccCCceeEEEEeCCC--CcccccccccccccceeEecccccchHHHHHHhccCCCcc
Q 016087          230 TKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPL--PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLE  302 (395)
Q Consensus       230 ~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  302 (395)
                      .+|++|++.+-.     ....+....|+|++|.++|..  ..++.....++|+|..||+++..+++-   .-++.++||+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            466666666533     334445567777777777754  222333455677777777777766532   3445667777


Q ss_pred             EEEeeCCCCCc--hh--ccCCCccCEEecccCCCch---------hhhhhCCCcceeEEeeeeeecc
Q 016087          303 SLLIAGCDDLK--SI--NISSRSLKLLEIYDCLRLV---------EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       303 ~L~L~~~~~l~--~~--~~~~~~Lk~L~L~~~~~l~---------~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      .|.+.+.+-..  .+  .....+|+.|+|+..+...         +....+|+|+.|+++|+.+..+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            77666643221  11  1235777777777433222         1113478888888887766433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=9e-06  Score=72.45  Aligned_cols=190  Identities=17%  Similarity=0.087  Sum_probs=136.8

Q ss_pred             CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCCC---ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      ..+++++|... -..+..+...+-++|.|+.|+|+.+.+..+.   +....+|++|.|.+...+......++...|.+.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            58899998542 2234555555667999999999998886321   1478899999999999999999999999999999


Q ss_pred             EeeecCCC----CceEeeCC-CCCcceEEecccc-----ccchhhccCCceeEEEEeCCCCccc--ccccccccccceeE
Q 016087          213 LSLQLCPG----LKNLELSG-LTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLR  280 (395)
Q Consensus       213 L~l~~c~~----~~~~~i~~-~~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~  280 (395)
                      |+++.+..    .+.-.+.. -+.++.|....|.     +...+.-..||+.++.+..++....  .-.....|.+-.|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            99988732    12223322 2478888888886     3344445689999999988763221  22244567777899


Q ss_pred             ecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---------cCCCccCEEe
Q 016087          281 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---------ISSRSLKLLE  326 (395)
Q Consensus       281 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---------~~~~~Lk~L~  326 (395)
                      |+.+.+...+....+.+||.|..|.+.+.+-.+.+.         ...++++.|.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            999988887778888999999999999876554322         2346666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=3.7e-06  Score=85.94  Aligned_cols=147  Identities=17%  Similarity=0.163  Sum_probs=103.7

Q ss_pred             CCccEEEEcceecc---C--CCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087          162 NSIEILTLAGLKLE---S--PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  236 (395)
Q Consensus       162 ~~L~~L~L~~~~~~---~--~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~  236 (395)
                      .+|++|+++|...-   .  ..+.-||+|++|.+.+..+..+.+..+..++|+|..|+|+++....-.-++.+.+|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            46888888774332   1  123369999999999999966668889999999999999998543323445667777777


Q ss_pred             ecccc-----ccchhhccCCceeEEEEeCCCCcccc-c------ccccccccceeEecccccchHHHHHHhccCCCccEE
Q 016087          237 VCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQCK-F------NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL  304 (395)
Q Consensus       237 i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~~-~------~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L  304 (395)
                      +.+-+     .+.. .....+|+.|++|........ +      .-..+|+|+.|+.++..++.+.+..+...-|+|+..
T Consensus       202 mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  202 MRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             ccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            76543     1111 136788999999876522211 1      123489999999999999888888888877888877


Q ss_pred             EeeCC
Q 016087          305 LIAGC  309 (395)
Q Consensus       305 ~L~~~  309 (395)
                      .+.+|
T Consensus       281 ~~~~~  285 (699)
T KOG3665|consen  281 AALDC  285 (699)
T ss_pred             hhhhh
Confidence            65543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.67  E-value=2.2e-05  Score=70.14  Aligned_cols=189  Identities=12%  Similarity=0.113  Sum_probs=115.8

Q ss_pred             CCCCccEEEEcceecc----------CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-------
Q 016087          160 CSNSIEILTLAGLKLE----------SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-------  221 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~----------~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-------  221 (395)
                      -|.+|+.|..++..-.          .+ ..-.|.+|+.+.++.|.  .+.+..+...=|.|.++.+......       
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccccccccccc
Confidence            4677888887764211          11 11157788888887775  3444455555677777777553211       


Q ss_pred             ------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEe
Q 016087          222 ------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRF  281 (395)
Q Consensus       222 ------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L  281 (395)
                                        ....+.....|+.++++.+.  .+..-.-.+|.++.|.++.+....+. ++..+++|++|+|
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDL  336 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDL  336 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeec
Confidence                              00112223467777777663  22233346788888888887633222 3677889999999


Q ss_pred             cccccchHHHHHHhccCCCccEEEeeCCCCCchhc--cCCCccCEEecccCC--Cchhh--hhhCCCcceeEEeeeeee
Q 016087          282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCL--RLVEV--KIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~~~--~l~~l--~~~~~~L~~L~~~~~~~~  354 (395)
                      ++|.++  .+..+-..+.|+++|.++++. ++.+.  ...-+|.+|++.+..  .+.++  ++++|.||.+.+.+|++.
T Consensus       337 S~N~Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  337 SGNLLA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ccchhH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            888754  233444567888888888753 22221  123567888886432  34443  367999999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.66  E-value=9.7e-07  Score=72.35  Aligned_cols=149  Identities=16%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             cccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-ceEeeCCCCCcc
Q 016087          157 IILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-KNLELSGLTKLN  233 (395)
Q Consensus       157 ~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-~~~~i~~~~~L~  233 (395)
                      .+++..+++.|.|+++.+.  +|....+.+|+.|++.++.+.  .+..-+++.|+|+.|++..+... -.--..++|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            3455566666666665554  233335666666666666542  12233455555665555543211 000123344555


Q ss_pred             eEEecccc----ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          234 KFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       234 ~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      .|++....    .++.=.+.+..|+.|+++++....++..++.+.+|+.|.+..+++.  .+..-++.+..|+.|.+.+.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence            55554432    0111111233344555555544334455566666666666655422  11222344555666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=5.5e-05  Score=67.58  Aligned_cols=191  Identities=13%  Similarity=0.016  Sum_probs=119.8

Q ss_pred             CccEEEEcceeccCCC-----ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEe-e-CCCCCcce
Q 016087          163 SIEILTLAGLKLESPR-----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE-L-SGLTKLNK  234 (395)
Q Consensus       163 ~L~~L~L~~~~~~~~~-----~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~-i-~~~~~L~~  234 (395)
                      -+.-|.+-+|.+...+     +..+..++.|+|.+|.+ ++..+..++.+.|.|+.|+++.+.-...+. . ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            3455556666655221     12678899999999999 777899999999999999999886432111 1 12348999


Q ss_pred             EEecccc----ccchhhccCCceeEEEEeCCCCccccc----ccccccccceeEecccc-cchHHHHHHhccCCCccEEE
Q 016087          235 FEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLL  305 (395)
Q Consensus       235 L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~  305 (395)
                      |.+.+..    ....+.-..|.++.|.++.+.-..+.+    .-...+.+++|++-.|. ..+.....+...|||+..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            9998875    344444467777777777663111111    11123577888887776 33445667778899999999


Q ss_pred             eeCCCCCch----hccCCCccCEEecc--cCCCch--hhhhhCCCcceeEEeeeee
Q 016087          306 IAGCDDLKS----INISSRSLKLLEIY--DCLRLV--EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       306 L~~~~~l~~----~~~~~~~Lk~L~L~--~~~~l~--~l~~~~~~L~~L~~~~~~~  353 (395)
                      +..|+.=+.    -...+|.+--|.|.  +..++.  .-....|.|..|.+.++++
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            998852111    11123444444443  111222  2234577888888888875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.62  E-value=1.6e-05  Score=71.02  Aligned_cols=126  Identities=18%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEe
Q 016087          182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQ  259 (395)
Q Consensus       182 ~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~  259 (395)
                      ...|++|+|++|.++.  ++....-.|.++.|+++++....--.+..+++|++|+++++.  .+.......-|+++|.++
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4678999999998732  333345579999999999865432235567899999999885  444455678899999999


Q ss_pred             CCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          260 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      ++..... --++.+-+|..|++.+|.+..-.-..-++.+|.|+++.+.+++
T Consensus       361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            8763221 1255678999999999998876667778999999999999875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.50  E-value=1.2e-05  Score=81.62  Aligned_cols=202  Identities=16%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .++.+.+..  +....+|..+...++|++|.|.++.+. .|... .+.+|+.|+++.+.++.-.+  .+..+..++.+..
T Consensus        69 ~L~~ln~s~--n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl--~i~~lt~~~~~~~  144 (1081)
T KOG0618|consen   69 HLRQLNLSR--NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPL--VIEVLTAEEELAA  144 (1081)
T ss_pred             HHhhcccch--hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCch--hHHhhhHHHHHhh
Confidence            445555432  223556666667777888888777665 33333 67788888888888743322  2444666666767


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeE-EEEeCCCCcccccccccccccceeEecccccchHHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQE-VSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ  294 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  294 (395)
                      +++.....+  .. ..++++++........+.+..-+++. +++..+.-.  ...+..+++|+.|+...+.+..     +
T Consensus       145 s~N~~~~~l--g~-~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-----l  214 (1081)
T KOG0618|consen  145 SNNEKIQRL--GQ-TSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-----L  214 (1081)
T ss_pred             hcchhhhhh--cc-ccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccce-----E
Confidence            666222111  11 12444444433323333333344444 555554321  3345556677776666554332     2


Q ss_pred             hccCCCccEEEeeCCCCCchhccCC-CccCEEecc--cCCCchhhhhhCCCcceeEEeeeee
Q 016087          295 ISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIY--DCLRLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~--~~~~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      --.-++|+.|+.+.|+..+.....- .+|++++++  +..++++....|++|+.++..++.+
T Consensus       215 ~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  215 EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence            2234677777777766443222222 367777776  3445566667777777777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.48  E-value=1.1e-06  Score=81.02  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             ceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEeccc
Q 016087          252 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYD  329 (395)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~  329 (395)
                      +|+-|++..+....++ .+++|..|+.|+++.+.+.. ...+....++.|..|++.+.+  .+..-.+...+|++|++++
T Consensus       207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence            4444455544433333 67788888888888876542 334556678888899988864  2333333457889999985


Q ss_pred             C--CCchhhhhhCCCcceeEEeeeee
Q 016087          330 C--LRLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       330 ~--~~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      .  .+++.-.+++ +|.+|.+.|+++
T Consensus       285 N~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  285 NDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             CccccCCcccccc-eeeehhhcCCch
Confidence            3  2444444566 788888999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.24  E-value=1.1e-05  Score=66.21  Aligned_cols=134  Identities=18%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             cccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-  227 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-  227 (395)
                      ...+|..+....+|+.|++.++.+. .| ....+++|++|++.-++..  .+..=++++|.||.|++.++......--. 
T Consensus        45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcc
Confidence            3455666777888888888888776 33 3347888888888877651  11222567888888888887432111111 


Q ss_pred             --CCCCcceEEeccccccchhh---ccCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087          228 --GLTKLNKFEVCDAEELQRLC---IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       228 --~~~~L~~L~i~~c~~l~~l~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                        .+..|+.|.+++.. +..+.   -...+|+.|.+..+.-...+-.++.+..|+.|++.++.++
T Consensus       123 ff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence              23466777777663 22222   2445666666666654445666788899999999998754

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.24  E-value=0.001  Score=63.28  Aligned_cols=135  Identities=18%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  260 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~  260 (395)
                      .+++++.|+++.|.+..  +.   .--+.|++|.+.+|..+..+.-.-.++|++|.+.+|..+..   ..++|+.|.+.+
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~~  121 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIKG  121 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeCC
Confidence            46778888888775421  11   11235888888887765332211134788888887764443   245677777765


Q ss_pred             CCCccccccccc-ccccceeEecccccchHHHHHHhccC-CCccEEEeeCCCCCchhccCCCccCEEeccc
Q 016087          261 PLPFQCKFNLAS-CKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYD  329 (395)
Q Consensus       261 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~  329 (395)
                      .....    ++. .++|+.|.+.++...  ....+...+ ++|+.|.+.+|..+..-..--.+|+.|.++.
T Consensus       122 n~~~~----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        122 SATDS----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             CCCcc----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            43211    222 246777777543211  001111123 4788888888875532111125788888864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.16  E-value=7e-05  Score=74.44  Aligned_cols=198  Identities=17%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             ccceEEEEEecCCCcCCCchhHHHHHHH-HHhCCCcEEEEEecC-CCcccccccccCCCCccEEEEcceeccCCC-----
Q 016087          106 IRLMNFSLFVPGDSLEICLPYIDQCIFY-ALGCNVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPR-----  178 (395)
Q Consensus       106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~-~~~~~l~~L~l~~~~-~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-----  178 (395)
                      ..++.|+......   .+...+.+.-.. -+-...+.+.+.... ..+.. |-.++.++.|++|.|.+|.+.-..     
T Consensus        55 ~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~l  130 (1096)
T KOG1859|consen   55 APVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQEL  130 (1096)
T ss_pred             CCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHH
Confidence            5677777665432   222333332211 122456666654422 22333 667888999999999998654111     


Q ss_pred             -----------------------------ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCC
Q 016087          179 -----------------------------SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL  229 (395)
Q Consensus       179 -----------------------------~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~  229 (395)
                                                   +.....|.+.++++|..  ..++..+.-.|.|+.|+|+.+...+.-.+.-+
T Consensus       131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l  208 (1096)
T KOG1859|consen  131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRL  208 (1096)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhc
Confidence                                         11223444455555554  11122233357788888888865433355667


Q ss_pred             CCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087          230 TKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  307 (395)
Q Consensus       230 ~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  307 (395)
                      +.|++|+++.+.  .++.+.....+|.-|.+.++.-.. ...+.++.+|..|++++|-+.+..-...+..+..|..|.|.
T Consensus       209 ~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  209 PKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             ccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence            899999998765  566666666668888888876322 12355678899999988877766555566667788888888


Q ss_pred             CCC
Q 016087          308 GCD  310 (395)
Q Consensus       308 ~~~  310 (395)
                      +++
T Consensus       288 GNP  290 (1096)
T KOG1859|consen  288 GNP  290 (1096)
T ss_pred             CCc
Confidence            854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.12  E-value=0.004  Score=65.82  Aligned_cols=261  Identities=18%  Similarity=0.182  Sum_probs=142.4

Q ss_pred             hhhHHHHHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCC
Q 016087           84 KQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNS  163 (395)
Q Consensus        84 ~~~~~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~  163 (395)
                      .....-+.+.|++.|......-.+.....++       .-.-.+..|++......-+..-.. .+.+....|.. .+...
T Consensus       454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~-~~~~~  524 (889)
T KOG4658|consen  454 DVGYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQV-KSWNS  524 (889)
T ss_pred             cchHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccceEEE-CCcCccccccc-cchhh
Confidence            3445667777777775433210022233222       111344455555433333331111 11223334432 23456


Q ss_pred             ccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecc
Q 016087          164 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCD  239 (395)
Q Consensus       164 L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~  239 (395)
                      .++..+.++.+. .+....+++|++|-+.++.. -......++...|.|+.|++++|.....+  .|+.+-+|+.|++++
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            777777776665 55666788999999998862 11112234667999999999998766433  456677999999988


Q ss_pred             ccccchhhc---cCCceeEEEEeCCCCcc-cccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCC--
Q 016087          240 AEELQRLCI---IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDL--  312 (395)
Q Consensus       240 c~~l~~l~~---~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l--  312 (395)
                      +. +..+..   ....|.+|++..+.... ++.....+++|++|.+.... ..+.....-+..+.+|+.|++......  
T Consensus       605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~  683 (889)
T KOG4658|consen  605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL  683 (889)
T ss_pred             CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence            84 333332   34466677776554222 22334458899999987664 233333444466677777777554320  


Q ss_pred             chhccCCCccCEE----ecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087          313 KSINISSRSLKLL----EIYDCL--RLVEVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       313 ~~~~~~~~~Lk~L----~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      +.+ ....+|..+    .+..+.  .........++|++|.+.++.+..
T Consensus       684 e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  684 EDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence            111 122333322    221211  111333567888888888887643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.11  E-value=0.00011  Score=77.30  Aligned_cols=80  Identities=19%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~  214 (395)
                      +.++.|+++. .....+||..++.+-+|++|++++..+. .|... .+..|.+|++..+..-. .+..+....++|++|.
T Consensus       571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR  648 (889)
T ss_pred             cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence            4555555543 2335667777777777777777776665 33333 66677777766655311 1133344466777777


Q ss_pred             eecC
Q 016087          215 LQLC  218 (395)
Q Consensus       215 l~~c  218 (395)
                      +..-
T Consensus       649 l~~s  652 (889)
T KOG4658|consen  649 LPRS  652 (889)
T ss_pred             eecc
Confidence            7553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.05  E-value=6.7e-06  Score=76.08  Aligned_cols=156  Identities=19%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CCcccccccccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEee
Q 016087          149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL  226 (395)
Q Consensus       149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i  226 (395)
                      +...++|..++.|.+|..|.+.++.+.  ++...++..|++|+...+..  ..+..-+++...|+.|++..+....-..+
T Consensus       147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef  224 (565)
T KOG0472|consen  147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEF  224 (565)
T ss_pred             cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCC
Confidence            345667777777777777777776654  33333577777777766654  12222345556666666666644322344


Q ss_pred             CCCCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087          227 SGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES  303 (395)
Q Consensus       227 ~~~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  303 (395)
                      .+|..|+.|.++...  .++.-.. +.++|..|++.++...+++..+.-+.+|..|+++++.++.  +.--++++ +|+.
T Consensus       225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKF  301 (565)
T ss_pred             CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeee
Confidence            455555555555442  1111111 4455566666555544445545555566666666655442  12222333 4555


Q ss_pred             EEeeCC
Q 016087          304 LLIAGC  309 (395)
Q Consensus       304 L~L~~~  309 (395)
                      |.+.+.
T Consensus       302 L~leGN  307 (565)
T KOG0472|consen  302 LALEGN  307 (565)
T ss_pred             hhhcCC
Confidence            555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.85  E-value=0.00028  Score=65.47  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             HHHHhccCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCCch----hhhhhCCCcceeEEeeeeeeccee
Q 016087          291 LCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLV----EVKIAASSLSIFKYSGDVISFQLG  358 (395)
Q Consensus       291 ~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~l~----~l~~~~~~L~~L~~~~~~~~~~~~  358 (395)
                      ...-+.++|+|++|++++.+ ++.+.    .....++.|.|... ++.    .+..+...|++|++++|+++.-..
T Consensus       266 P~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             hHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            33446777888888888764 32222    23356677776532 233    334678888999999988755443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.84  E-value=0.0029  Score=60.31  Aligned_cols=158  Identities=15%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             cCCCCccEEEEcceecc-CCCccCCC-CCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087          159 LCSNSIEILTLAGLKLE-SPRSVKLS-SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  236 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~-~~~~~~~~-~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~  236 (395)
                      ..|+++++|++++|.+. .|   .+| +|++|.+++|.- -..+...+  .+.|+.|++.+|..+..    -.++|+.|.
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~s----LP~sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISG----LPESVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccc----cccccceEE
Confidence            34788999999999765 34   344 699999988653 11111112  36899999999965431    124889999


Q ss_pred             eccccccchhhccCCceeEEEEeCCC-CcccccccccccccceeEecccccchHHHHHHhccC-CCccEEEeeCCC--CC
Q 016087          237 VCDAEELQRLCIIAQDVQEVSIQGPL-PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCD--DL  312 (395)
Q Consensus       237 i~~c~~l~~l~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~--~l  312 (395)
                      +... ....+..-.++|+.|.+.+.. .........-.++|++|++.+|....     +...+ ..|+.|+++.+.  .+
T Consensus       119 L~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL  192 (426)
T PRK15386        119 IKGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW  192 (426)
T ss_pred             eCCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence            8643 333444456788999885432 11001111123689999999886331     22333 489999997642  22


Q ss_pred             chhccCC-CccCEEecccCCCc
Q 016087          313 KSINISS-RSLKLLEIYDCLRL  333 (395)
Q Consensus       313 ~~~~~~~-~~Lk~L~L~~~~~l  333 (395)
                      +...... +++ .|.+.+|..+
T Consensus       193 eI~~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        193 NISFEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             cCccccccccc-Eechhhhccc
Confidence            2222222 466 7777776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.83  E-value=0.00099  Score=45.68  Aligned_cols=58  Identities=10%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             CceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          251 QDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       251 p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      |+|++|.++++....++ ..+..+++|++|+++++.+.. .....+..+++|+.|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence            44555555555422222 234556666666666655432 11234555666666666554

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00029  Score=61.95  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             cccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCc--eE-eeC
Q 016087          153 NLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLK--NL-ELS  227 (395)
Q Consensus       153 ~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~-~i~  227 (395)
                      ++....-....|+.|++.++.+. ......+|+||+|.++.+.+ ....+..++..||+|.+|+++++..-.  ++ ...
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             CcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            34433334667888888887766 33444789999999999966 455677778888999999999985421  11 223


Q ss_pred             CCCCcceEEecccc--cc----chhhccCCceeEEEEeCCC
Q 016087          228 GLTKLNKFEVCDAE--EL----QRLCIIAQDVQEVSIQGPL  262 (395)
Q Consensus       228 ~~~~L~~L~i~~c~--~l----~~l~~~~p~L~~L~l~~~~  262 (395)
                      .+.+|..|.+..|.  ++    ..+...+|+|++|+-....
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            45677888888775  11    1122256666666554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.71  E-value=0.0026  Score=56.48  Aligned_cols=95  Identities=13%  Similarity=-0.017  Sum_probs=58.8

Q ss_pred             hhHHHHHHHH-HhCCCcEEEEEecCCC---cccccccccCCCCccEEEEcceecc-------------CCCccCCCCCcE
Q 016087          125 PYIDQCIFYA-LGCNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLE-------------SPRSVKLSSLTK  187 (395)
Q Consensus       125 ~~~~~~l~~~-~~~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~-------------~~~~~~~~~Lk~  187 (395)
                      .++...+... +...+.+++|+....+   ...+...+.+-++|+..+++.....             .+....||.|++
T Consensus        17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~   96 (388)
T COG5238          17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK   96 (388)
T ss_pred             chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence            4555555543 3477888888653322   1233334445567777777763221             122237888888


Q ss_pred             EEeeeeec---ChHHHHHHHcCCCCccEEeeecCC
Q 016087          188 LFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       188 L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      .+|++|-|   ....+..+++....|+.|.+.+|.
T Consensus        97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             eeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            88888887   334566677777888888888774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.54  E-value=0.0052  Score=42.03  Aligned_cols=55  Identities=9%  Similarity=0.161  Sum_probs=31.2

Q ss_pred             CcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcccc-cccccccccceeEecccc
Q 016087          231 KLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTH  285 (395)
Q Consensus       231 ~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~  285 (395)
                      +|+.|.+.+|.  .+..-. ..+++|++|+++++....++ ..+..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555542  222111 24677777777766533322 246677888888887775

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.53  E-value=0.0013  Score=63.61  Aligned_cols=166  Identities=20%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             cCCCCccEEEEcceecc-CCCcc-CC-CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-CCCCcce
Q 016087          159 LCSNSIEILTLAGLKLE-SPRSV-KL-SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNK  234 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~-~~~~~-~~-~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~~~~L~~  234 (395)
                      ...+.++.|.+.++.+. .+... .+ ++|+.|+++++.+..-  ..-+..+|.|+.|++..|....-.... ..++|+.
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            33456777777776655 33333 33 2788888888776321  123566777888888777543222222 4456777


Q ss_pred             EEeccccccchhhc---cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCC
Q 016087          235 FEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDD  311 (395)
Q Consensus       235 L~i~~c~~l~~l~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  311 (395)
                      |++++.. +..+..   ...+|+++.++++........+....++..+.+..+.+.+-  ......+++++.|++.++..
T Consensus       191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccc
Confidence            7777663 333322   22336666666653222233344555556665555544321  23445556666666665431


Q ss_pred             Cchh-ccCCCccCEEeccc
Q 016087          312 LKSI-NISSRSLKLLEIYD  329 (395)
Q Consensus       312 l~~~-~~~~~~Lk~L~L~~  329 (395)
                      -..- .....+|+.|++++
T Consensus       268 ~~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         268 SSISSLGSLTNLRELDLSG  286 (394)
T ss_pred             cccccccccCccCEEeccC
Confidence            1111 22335566666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.38  E-value=0.0039  Score=60.28  Aligned_cols=157  Identities=18%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             CCcccccccccCCC-CccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe
Q 016087          149 NPRFNLPEIILCSN-SIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE  225 (395)
Q Consensus       149 ~~~~~l~~~l~~~~-~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~  225 (395)
                      .....++......+ +|+.|+++++.+. .+ ....+++|+.|+++.+.+.+  +.......+.|+.|+++++....-..
T Consensus       126 n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCch
Confidence            33455565555553 7777777776665 22 33467777777777777632  22222256777777777764321111


Q ss_pred             e-CCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCcc
Q 016087          226 L-SGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLE  302 (395)
Q Consensus       226 i-~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  302 (395)
                      . .....|+.|.++...  ......-...++..+.+.++........++.+++++.|++..+.++.-..   +....+++
T Consensus       204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~  280 (394)
T COG4886         204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLR  280 (394)
T ss_pred             hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc---ccccCccC
Confidence            1 122246667666653  11222223445555554443322223345556667777777776554221   55667777


Q ss_pred             EEEeeCCC
Q 016087          303 SLLIAGCD  310 (395)
Q Consensus       303 ~L~L~~~~  310 (395)
                      .|++++..
T Consensus       281 ~L~~s~n~  288 (394)
T COG4886         281 ELDLSGNS  288 (394)
T ss_pred             EEeccCcc
Confidence            77776643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.37  E-value=0.00097  Score=58.73  Aligned_cols=103  Identities=19%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             CCCccEEeeecCCCCceEeeCCCCCcceEEecccc-----ccchhhccCCceeEEEEeCCCCccc--cccccccccccee
Q 016087          207 CPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYL  279 (395)
Q Consensus       207 ~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L  279 (395)
                      ...|+.|++.++..........+|+|+.|.++++.     .+..+...+|+|+++.++++....+  .-.+..+.+|..|
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            34444555444433222233345566666666652     4444455567777777776653211  1123345566666


Q ss_pred             Eecccccch--HHHHHHhccCCCccEEEeeCC
Q 016087          280 RFALTHIKD--EWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       280 ~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++.+|..+.  +--..++.-+|.|+.|+-..+
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            665554221  111233444555555544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.14  E-value=0.00043  Score=64.31  Aligned_cols=80  Identities=18%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             cccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch----hccCCCccCEEecccCCCch----hhhhhCC
Q 016087          270 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLV----EVKIAAS  341 (395)
Q Consensus       270 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~~~~Lk~L~L~~~~~l~----~l~~~~~  341 (395)
                      +..+++|++|+|++|+++.-. ...+.+...|+.|.|...+ ++.    .......|+.|+|++.. +.    -......
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~  346 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLF  346 (498)
T ss_pred             HhhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecccccccc
Confidence            667889999999998876432 4456677778888877754 221    22344677777776532 11    1113344


Q ss_pred             CcceeEEeeee
Q 016087          342 SLSIFKYSGDV  352 (395)
Q Consensus       342 ~L~~L~~~~~~  352 (395)
                      .|.+|.+.+|+
T Consensus       347 ~l~~l~l~~Np  357 (498)
T KOG4237|consen  347 SLSTLNLLSNP  357 (498)
T ss_pred             eeeeeehccCc
Confidence            55555555544

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.008  Score=33.26  Aligned_cols=25  Identities=44%  Similarity=0.592  Sum_probs=22.7

Q ss_pred             CCcEEEeeeeec-ChHHHHHHHcCCC
Q 016087          184 SLTKLFLMRVDA-TDLVLQSLLIGCP  208 (395)
Q Consensus       184 ~Lk~L~L~~~~~-~~~~l~~l~~~~p  208 (395)
                      +||+|+|..+.+ +++.+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6778999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.94  E-value=0.0095  Score=37.75  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=15.2

Q ss_pred             ccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          275 FLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       275 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      +|++|+++++.+++  +...++.+++|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            45555555555442  2222455555555555554

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.92  E-value=0.022  Score=50.76  Aligned_cols=214  Identities=17%  Similarity=0.119  Sum_probs=102.4

Q ss_pred             hhHHHHHHHHHh--CCCcEEEEEe--cCCCcccccc-------cccCCCCccEEEEcceecc--CCCcc-----CCCCCc
Q 016087          125 PYIDQCIFYALG--CNVKELSLEL--LGNPRFNLPE-------IILCSNSIEILTLAGLKLE--SPRSV-----KLSSLT  186 (395)
Q Consensus       125 ~~~~~~l~~~~~--~~l~~L~l~~--~~~~~~~l~~-------~l~~~~~L~~L~L~~~~~~--~~~~~-----~~~~Lk  186 (395)
                      .....|+....+  ++++...++-  .+....+++.       .+..|++|+..+|+.+.+.  .+...     .-.+|+
T Consensus        44 tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~  123 (388)
T COG5238          44 TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLV  123 (388)
T ss_pred             HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCce
Confidence            344556665443  4555555532  2222223332       3456888998888887765  22211     567888


Q ss_pred             EEEeeeeecCh---HHHH----HH-----HcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCce
Q 016087          187 KLFLMRVDATD---LVLQ----SL-----LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDV  253 (395)
Q Consensus       187 ~L~L~~~~~~~---~~l~----~l-----~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L  253 (395)
                      +|.+++|..+.   ..+.    ++     +..-|.||......+.....    +        .    ......+ .-.+|
T Consensus       124 HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng----s--------~----~~~a~~l~sh~~l  187 (388)
T COG5238         124 HLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG----S--------K----ELSAALLESHENL  187 (388)
T ss_pred             eEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC----c--------H----HHHHHHHHhhcCc
Confidence            88888887722   1111    11     23345555555444421100    0        0    0000011 11355


Q ss_pred             eEEEEeCCCCcc------cccccccccccceeEecccccchHH---HHHHhccCCCccEEEeeCCC----CCchhcc---
Q 016087          254 QEVSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCD----DLKSINI---  317 (395)
Q Consensus       254 ~~L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~----~l~~~~~---  317 (395)
                      +.+.+..+...+      ....+..+.+|+.|+|..|.++-..   +...+..-++|..|.+.+|-    ....+..   
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            555554433111      1112345677777777776655432   22233444567777777763    1111111   


Q ss_pred             --CCCccCEEecccC---------CCchhhh-hhCCCcceeEEeeeeee
Q 016087          318 --SSRSLKLLEIYDC---------LRLVEVK-IAASSLSIFKYSGDVIS  354 (395)
Q Consensus       318 --~~~~Lk~L~L~~~---------~~l~~l~-~~~~~L~~L~~~~~~~~  354 (395)
                        ..|+|..|.....         .++.++. .+.|-|..|.+.||.+.
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence              2356666655311         1122222 45777777777777653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.91  E-value=0.0028  Score=57.56  Aligned_cols=41  Identities=29%  Similarity=0.549  Sum_probs=36.9

Q ss_pred             hccccccccCCCC----HHHHHHHhcCCCcccchhhhhhhhhhhh
Q 016087           13 ESLSHIDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKR   53 (395)
Q Consensus        13 ~~~~~~d~is~LP----deil~~Ils~L~~~d~~r~~~vsrrWr~   53 (395)
                      +++-..|.++.||    |+|...||+||+..+++.|.+|||+|++
T Consensus        67 rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   67 KPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            3444578899999    9999999999999999999999999986

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.0031  Score=56.14  Aligned_cols=96  Identities=17%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             CCcceEEeccccccchhhc--cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087          230 TKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  307 (395)
Q Consensus       230 ~~L~~L~i~~c~~l~~l~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  307 (395)
                      .+.++|+.++| .+..+.+  .+|.|+-|.++-+.... ...+..|.+|+.|+|..|.|.+-.-...+.++|+|+.|.|.
T Consensus        19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            36667777777 4555544  78999999988765322 22366789999999998887776667778999999999998


Q ss_pred             CCCCCc--------hhccCCCccCEEec
Q 016087          308 GCDDLK--------SINISSRSLKLLEI  327 (395)
Q Consensus       308 ~~~~l~--------~~~~~~~~Lk~L~L  327 (395)
                      .++=..        .+...+|+||.|+=
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhccC
Confidence            743221        12335688888863

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.46  E-value=0.0082  Score=56.57  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=33.6

Q ss_pred             cCCCCHHHHHHHhcCCC-cccchhhhhhhhhhhhhccc
Q 016087           21 ISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRAWHT   57 (395)
Q Consensus        21 is~LPdeil~~Ils~L~-~~d~~r~~~vsrrWr~lw~~   57 (395)
                      |++||+|+|..|..+|+ ..|++|.+.|||.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            78999999999999996 78999999999999986543

>PLN03150 hypothetical protein; Provisional

Probab=95.34  E-value=0.029  Score=57.62  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=34.2

Q ss_pred             cCCceeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          249 IAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      ..++|+.|+++++.. ..++..++.+++|+.|+|++|.++... ...+..+++|+.|+|+++.
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCc
Confidence            456666666666542 223434556666666666666655322 3334556666666666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.33  E-value=0.036  Score=47.24  Aligned_cols=59  Identities=27%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             CCCCccEEEEcceecc-C-C-CccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCC
Q 016087          160 CSNSIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~-~-~-~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      ..++|..|.|.++.+. . + -...+|+|+.|.|.+|++ .-.++.. +..||.|++|.+-+++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            3556666666666554 1 1 122566666776666666 3334443 3446666666666654

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.19  E-value=0.01  Score=53.64  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=30.3

Q ss_pred             cccCCCCHHHHHHHhcC-----CCcccchhhhhhhhhhhh
Q 016087           19 DRISNLPEPILHHILSF-----LPFTQTVQTRVLSRTWKR   53 (395)
Q Consensus        19 d~is~LPdeil~~Ils~-----L~~~d~~r~~~vsrrWr~   53 (395)
                      +.|+.||||||..||..     ++.+++.++++|||.|+.
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            44689999999999975     467999999999999974

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.0083  Score=50.99  Aligned_cols=62  Identities=24%  Similarity=0.327  Sum_probs=45.9

Q ss_pred             cccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCchhcc----CCCccCEEecccCC
Q 016087          270 LASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCL  331 (395)
Q Consensus       270 ~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~----~~~~Lk~L~L~~~~  331 (395)
                      +..++.++.|.+.+|. +.+..+..+.+..|+|+.|+|++|+.++.-+.    .+++|+.|.|.+..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4456777788888776 56666677767778999999999988876554    34788888887544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.98  E-value=0.018  Score=36.47  Aligned_cols=33  Identities=33%  Similarity=0.298  Sum_probs=16.2

Q ss_pred             CCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087          184 SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       184 ~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                      +|++|+++++.+++  +...+..+++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            45555555555532  2223455666666666665

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.70  E-value=0.05  Score=46.40  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             CccEEEEcceecc-CCCccCCCCCcEEEeeeeecC--hHHHHHHHcCCCCccEEeeecCCCC---ceEeeCCCCCcceEE
Q 016087          163 SIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDAT--DLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLTKLNKFE  236 (395)
Q Consensus       163 ~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~--~~~l~~l~~~~p~Le~L~l~~c~~~---~~~~i~~~~~L~~L~  236 (395)
                      +...++|+++.+. ......++.|.+|.|+.|+++  +..+.   ...|+|..|.+.++...   .-....+||+|+.|+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566777777665 333447899999999999992  32333   44799999999998654   222456789999999


Q ss_pred             ecccc-----ccchhhc-cCCceeEEEEeCCC
Q 016087          237 VCDAE-----ELQRLCI-IAQDVQEVSIQGPL  262 (395)
Q Consensus       237 i~~c~-----~l~~l~~-~~p~L~~L~l~~~~  262 (395)
                      +.+.+     +.....+ ..|+|+.|++.+..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99875     3333333 78999999998765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.51  E-value=0.0099  Score=59.74  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             ccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          271 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       271 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      .-++.|++|+|+.|++++-.   .+..|+.|++|+|+++
T Consensus       184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence            34667777777777765432   4556777777777663

>PLN03150 hypothetical protein; Provisional

Probab=94.19  E-value=0.095  Score=53.84  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             eeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecc
Q 016087          253 VQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIY  328 (395)
Q Consensus       253 L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~  328 (395)
                      ++.|+++++.. ..++..++.+++|+.|+|++|.+... +...+..+++|+.|+|+++.--.   .....+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            55666665542 22344566677777777777766542 23345667777777777764222   222345677777776


Q ss_pred             cCCCchhhhh----hCCCcceeEEeeee
Q 016087          329 DCLRLVEVKI----AASSLSIFKYSGDV  352 (395)
Q Consensus       329 ~~~~l~~l~~----~~~~L~~L~~~~~~  352 (395)
                      ++.-...++.    ...++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            5532222221    12345566666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.0066  Score=51.58  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             CccEEEEcceecc---CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcceE
Q 016087          163 SIEILTLAGLKLE---SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKF  235 (395)
Q Consensus       163 ~L~~L~L~~~~~~---~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L  235 (395)
                      .++.++=+++.+.   .....+++.++.|.+.+|.. ++..++.+..-.|+|++|+|++|+.++.-   .+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3455555554443   22233788888899998888 88899998888999999999999876432   22345677777


Q ss_pred             Eecccc
Q 016087          236 EVCDAE  241 (395)
Q Consensus       236 ~i~~c~  241 (395)
                      .+.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            777554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.11  E-value=0.01  Score=58.02  Aligned_cols=132  Identities=16%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             cccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce-EeeCCCC
Q 016087          153 NLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLT  230 (395)
Q Consensus       153 ~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~  230 (395)
                      .+|..+.+...|++|+|+.+.+. .|...++--|+.|-+++++.+.-  ..-++..+.|..|+.++|..... -.+..+.
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            33444555556666666665554 44444555566666666665110  01122345555666666543211 1223344


Q ss_pred             CcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087          231 KLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       231 ~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                      +|+.|.+....  .+..-.. .-.|.+|+++.+....+++.+..+..|++|.|.+|.++
T Consensus       190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            55555555543  2222222 23377777777776667777777788888888777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=0.0044  Score=55.19  Aligned_cols=57  Identities=21%  Similarity=0.171  Sum_probs=28.8

Q ss_pred             CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecC
Q 016087          161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                      ++.|+.|.|+-+.+. ......|.+|++|.|..|.+ +-+.+.. +.+.|+|+.|-|..+
T Consensus        40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDEN   98 (388)
T ss_pred             cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccC
Confidence            344444444444443 22222556666666666665 3333332 455666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.72  E-value=0.032  Score=54.37  Aligned_cols=101  Identities=19%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             ccCCCCccEEEEcceecc-CCC-ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcce
Q 016087          158 ILCSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNK  234 (395)
Q Consensus       158 l~~~~~L~~L~L~~~~~~-~~~-~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~  234 (395)
                      +..+.+|..|++.++.+. ... ...+++|++|+++++.+ +-..+.    .++.|+.|++.+|...+--....+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence            455678888888887776 333 34688888888888887 333333    34458888888875443223334566666


Q ss_pred             EEecccc--ccchh-hccCCceeEEEEeCCC
Q 016087          235 FEVCDAE--ELQRL-CIIAQDVQEVSIQGPL  262 (395)
Q Consensus       235 L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~  262 (395)
                      ++++++.  .+... ....++++.+.+.++.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            7776664  12211 1345556666665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=90.56  E-value=0.011  Score=57.87  Aligned_cols=154  Identities=21%  Similarity=0.129  Sum_probs=88.0

Q ss_pred             cccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-ceEeeC
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-KNLELS  227 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-~~~~i~  227 (395)
                      ...+|..+..|..|..|.|..+.+. .+ ....+..|+.|+|+.+..+.-.  .-+..|| |+.|-++++... ....+.
T Consensus        87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~lp-Lkvli~sNNkl~~lp~~ig  163 (722)
T KOG0532|consen   87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLP--DGLCDLP-LKVLIVSNNKLTSLPEEIG  163 (722)
T ss_pred             cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCC--hhhhcCc-ceeEEEecCccccCCcccc
Confidence            4555655555666777777665544 23 3336788888888888762211  1133455 777777776432 223444


Q ss_pred             CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEE
Q 016087          228 GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL  305 (395)
Q Consensus       228 ~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~  305 (395)
                      ..+.|..|+.+.|.  .+..-.....+|+.|.+..+.-..++..+. .-.|..|+++.|++..  +.--+..+..|+.|.
T Consensus       164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQ  240 (722)
T ss_pred             cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeee
Confidence            55678888887774  222222344455555555554333333333 4456777777777542  222345677788888


Q ss_pred             eeCCC
Q 016087          306 IAGCD  310 (395)
Q Consensus       306 L~~~~  310 (395)
                      |.+++
T Consensus       241 LenNP  245 (722)
T KOG0532|consen  241 LENNP  245 (722)
T ss_pred             eccCC
Confidence            87764

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.10  E-value=0.49  Score=25.90  Aligned_cols=22  Identities=36%  Similarity=0.282  Sum_probs=12.9

Q ss_pred             CCCCcEEEeeeeec-ChHHHHHH
Q 016087          182 LSSLTKLFLMRVDA-TDLVLQSL  203 (395)
Q Consensus       182 ~~~Lk~L~L~~~~~-~~~~l~~l  203 (395)
                      |++|++|+|++|.- ++.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            45666666666654 66665554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=87.87  E-value=0.2  Score=50.25  Aligned_cols=42  Identities=36%  Similarity=0.555  Sum_probs=37.4

Q ss_pred             hccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087           13 ESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA   54 (395)
Q Consensus        13 ~~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l   54 (395)
                      +.....|.++.||-|+..+|+++|+.++++++++||+.|+..
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            334557999999999999999999999999999999999853

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.19  E-value=0.43  Score=25.50  Aligned_cols=22  Identities=27%  Similarity=0.120  Sum_probs=13.7

Q ss_pred             CCCCcEEEeeeeecChHHHHHH
Q 016087          182 LSSLTKLFLMRVDATDLVLQSL  203 (395)
Q Consensus       182 ~~~Lk~L~L~~~~~~~~~l~~l  203 (395)
                      +++|++|+|++|.+++++...+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888866666554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=86.84  E-value=0.2  Score=48.86  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=91.3

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEee
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l  215 (395)
                      +++.+++  ......++...+..+++|++|+|+++.+. ......++.|+.|++.+|.+ +...+    ..++.|..+++
T Consensus        96 ~l~~l~l--~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l  169 (414)
T KOG0531|consen   96 SLEALDL--YDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL  169 (414)
T ss_pred             ceeeeec--cccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccC
Confidence            4444444  23333344433566899999999998887 44444778899999999998 33322    23788889999


Q ss_pred             ecCCCCceEe--eCCCCCcceEEeccccccchhhc--cCCceeEEEEeCCCCccccccccccc--ccceeEecccccchH
Q 016087          216 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCK--FLKYLRFALTHIKDE  289 (395)
Q Consensus       216 ~~c~~~~~~~--i~~~~~L~~L~i~~c~~l~~l~~--~~p~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~  289 (395)
                      .++....-..  ...+.+|+.+.+.++. +..+..  ....+..+.+..+....+. .+....  .|+.+++.++.+...
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccc
Confidence            8886542222  3556688888887764 111110  1111122222222210000 011122  278888888775532


Q ss_pred             HHHHHhccCCCccEEEeeCC
Q 016087          290 WLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       290 ~~~~l~~~~~~L~~L~L~~~  309 (395)
                      .  ..+..+++++.|++.+.
T Consensus       248 ~--~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  248 P--EGLENLKNLPVLDLSSN  265 (414)
T ss_pred             c--ccccccccccccchhhc
Confidence            1  34455677777776653

>PF13013 F-box-like_2: F-box-like domain

Probab=86.40  E-value=0.51  Score=36.29  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             cCCCCHHHHHHHhcCCCcccchhhhhhhh
Q 016087           21 ISNLPEPILHHILSFLPFTQTVQTRVLSR   49 (395)
Q Consensus        21 is~LPdeil~~Ils~L~~~d~~r~~~vsr   49 (395)
                      +.+||+||+..|+.+-+..+.......|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            67899999999999999999988888887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.37  E-value=1.6  Score=34.27  Aligned_cols=11  Identities=18%  Similarity=0.603  Sum_probs=3.5

Q ss_pred             CCCCccEEeee
Q 016087          206 GCPLIEYLSLQ  216 (395)
Q Consensus       206 ~~p~Le~L~l~  216 (395)
                      +|.+|+.+.+.
T Consensus        10 ~~~~l~~i~~~   20 (129)
T PF13306_consen   10 NCSNLESITFP   20 (129)
T ss_dssp             T-TT--EEEET
T ss_pred             CCCCCCEEEEC
Confidence            34444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 52/369 (14%), Positives = 109/369 (29%), Gaps = 60/369 (16%)

Query: 21  ISNLPEPILHHILSFLPFTQTVQT-RVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDG 79
                + ++  +++++   +   +  ++ R W +          DS+    V +      
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI---------DSETREHVTMALCYTA 63

Query: 80  SEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCI-----FYA 134
           +     +L   F  +  +L+++      + N      G  +   +  I   +      + 
Sbjct: 64  TP---DRLSRRFPNL-RSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF 119

Query: 135 LGCNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRV 193
               V +L L+ L   R  +L  + L  +     T  GL        K+ +L        
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177

Query: 194 DATDLVLQSLLIGCPLIEYLSLQL-----------------CPGLKNLELSGLTKLNKFE 236
           +     L  L      +E L+  +                 C  L ++++     L    
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237

Query: 237 VCD-AEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKF---------------LKY 278
               A  L+  C   + +D+        L F  K       +               ++ 
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 279 LRFALTHIKDEWLCNQISKFPLLESLLIAGC---DDLKSINISSRSLKLLEIYDCLRLVE 335
           L      ++ E  C  I K P LE L          L+ +    + LK L I        
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 336 VKIAASSLS 344
           ++     +S
Sbjct: 358 MEDEEGLVS 366

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 241
              L  + +   D T+  L+S+      +    L L    + +    L    +  +   +
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 242 ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLL 301
           +L+R          ++  G       +       ++++        DE L       P L
Sbjct: 437 KLRRFAFYL-RQGGLTDLG-----LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 302 ESLLIAGC----DDLKSINISSRSLKLLEIYDC 330
           + L + GC      + +      SL+ L +   
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 78/468 (16%), Positives = 134/468 (28%), Gaps = 131/468 (27%)

Query: 1   MDRESGD-----DNIIMESLSHIDR------ISNLPEPIL-----HHILSFLPFTQTVQT 44
           MD E+G+      +I+               + ++P+ IL      HI+          T
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SK-DAVSGT 64

Query: 45  R----VLSRTWKRAWHTF--SVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETL 98
                 L    +     F   VL+ +  F       +    S      +  ++   ++ L
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-----MMTRMYIEQRDRL 119

Query: 99  RIRHNEMIRLMNFSLFVPGDSLEICL------PYIDQCIFYALGCNVKELSLELLGNPRF 152
               N++    N S   P   L   L        +   I   LG     ++L++  + + 
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYK- 175

Query: 153 NLPEIILCSNSIEI--LTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 210
                + C    +I  L L      SP +V L  L KL   ++D              L 
Sbjct: 176 -----VQCKMDFKIFWLNLK--NCNSPETV-LEMLQKLLY-QIDPNWTSRSDHSSNIKL- 225

Query: 211 EYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK--- 267
              S+Q        EL  L K   +E C       L ++  +VQ           CK   
Sbjct: 226 RIHSIQA-------ELRRLLKSKPYENC-------L-LVLLNVQNAKAWNAFNLSCKILL 270

Query: 268 ---------------------------FNLASCK--FLKYLRFALTHIKDEWLCNQISK- 297
                                            K   LKYL       + + L  ++   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-----DCRPQDLPREVLTT 325

Query: 298 FPLLESLLIA---------------GCDDLKSINISSRSLKLLEIYDCLRLVE------- 335
            P   S++                  CD L +I I S SL +LE  +  ++ +       
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IES-SLNVLEPAEYRKMFDRLSVFPP 383

Query: 336 -VKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEH 382
              I    LS+  +        +      K  L+ +    S+   +  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 64/421 (15%), Positives = 132/421 (31%), Gaps = 94/421 (22%)

Query: 2   DRESGDDNIIMESLSH---------IDRISNLPEPI--LHHILSFLPFTQTVQTR---VL 47
                    +++ L +          D  SN+   I  +   L  L            VL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVL 250

Query: 48  SRTW-KRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMI 106
                 +AW+ F       +   ++ L  +           +++ +++           I
Sbjct: 251 LNVQNAKAWNAF-------NLSCKI-LLTTRF---------KQVTDFLSAATTTH----I 289

Query: 107 RLMNFSL-FVPGDSLEICLPYIDQCIFYALGCNVKELSLE-LLGNPRFNLPEIILCSNSI 164
            L + S+   P +   + L Y        L C  ++L  E L  NPR     II  S   
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY--------LDCRPQDLPREVLTTNPR--RLSIIAESIRD 339

Query: 165 EILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 224
            + T    K       KL+++ +  L  ++  +   + +        +  L + P   ++
Sbjct: 340 GLATWDNWK--HVNCDKLTTIIESSLNVLEPAEY--RKM--------FDRLSVFPPSAHI 387

Query: 225 ELSGLTKL---NKFEVCD--AEELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKY 278
               L+ +              +L +  ++ +  +E +I   +P    +      +    
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLEL-KVKLENEYA 444

Query: 279 L-RFALTH--IKDEWLCNQISKFPLLESLLIAGCDD---------LKSINISSRSLKLLE 326
           L R  + H  I   +  + +    L         D          LK+I    R      
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYL---------DQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 327 IYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFL 386
           ++   R +E KI   S + +  SG +++  L  + F K + +   +           +FL
Sbjct: 496 VFLDFRFLEQKIRHDSTA-WNASGSILNT-LQQLKFYKPY-ICDNDPKYERLVNAILDFL 552

Query: 387 Q 387
            
Sbjct: 553 P 553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 22/210 (10%)

Query: 143 SLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQS 202
           S+EL G P F      L  +         ++  S      + L ++ L R+  TD  L+ 
Sbjct: 70  SVELKGKPHFAD--FNLVPDGWGGYVYPWIEAMSSS---YTWLEEIRLKRMVVTDDCLEL 124

Query: 203 LLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPL 262
           +       + L L  C G     L+ +    +        L+ L +   DV +VS     
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-------LKELDLRESDVDDVSGHWLS 177

Query: 263 PFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGC---DDLKSINI 317
            F       +   L  L  +     +    L   +++ P L+SL +      + L ++  
Sbjct: 178 HF-----PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232

Query: 318 SSRSLKLLEIYDCLRLVEVKIAASSLSIFK 347
            +  L+ L        V   + +       
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 28/221 (12%)

Query: 136 GCNVKELSLELLGNPRFNLPEIILCSN----SIEILTLAGLKLESPRSVKLSSLTKLFLM 191
              V+   L  L      L  + +        +E+L      L   R            +
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 192 RVDATDLVLQSLLIGCPLIEYLSL--------------QLCPGLKNLELSGLTKLNKFEV 237
            +  T+  L S+ +GCP +E +                +  P +    L  +       +
Sbjct: 358 AL--TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 238 CDA---EELQRLCIIAQDVQEVSIQGPLPFQCKFNLAS-CKFLKYLRFALTHIKDEWLCN 293
                      +    +D++ +S+ G L  +    + +  K ++ L  A     D  + +
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 294 QISKFPLLESLLIAGC----DDLKSINISSRSLKLLEIYDC 330
            +S    L  L I  C      L +      +++ L +  C
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 13 ESLSHIDRISNLPEPILHHILSFLPFTQTVQT-RVLSRTWKRAWHTFSVLKF 63
          E    ++ ++ LPEP+L  +L+ LP T+ VQ  R++   WK       +   
Sbjct: 43 EEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLL 94

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 56/343 (16%), Positives = 107/343 (31%), Gaps = 70/343 (20%)

Query: 21  ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGS 80
             +LP+ +L  I S L   + ++   + + W     +   L    D   +    D     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRW-YRLASDESLWQTLDLTGKNLHPDVTGRL 67

Query: 81  EAGKQKLREIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPY----------- 126
            +             +     H    R+ +  L    +   +L   L             
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127

Query: 127 --IDQCIFYALGCNVKELSLELLGNPRFN---LPEIILCSNSIEILTLAGLKLESPRSVK 181
             +   I   L  N   + L L G   F+   L  ++   + ++ L L+     + + V+
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187

Query: 182 L------SSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLN 233
           +       ++T+L L           L +L+  CP + +L L     LKN       +LN
Sbjct: 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 234 KFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 293
                    LQ L                      +L+ C            I  E L  
Sbjct: 248 Y--------LQHL----------------------SLSRC----------YDIIPETLLE 267

Query: 294 QISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEV 336
            + + P L++L + G     ++ +   +L  L+I +C     +
Sbjct: 268 -LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.47
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.4
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.32
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.28
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.2
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.2
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.03
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.94
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.91
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.84
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.62
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.43
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.33
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.02
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.0
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.97
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.97
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.52
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.51

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.9e-24  Score=202.73  Aligned_cols=281  Identities=15%  Similarity=0.153  Sum_probs=174.8

Q ss_pred             cccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhccccceeeeccccccccccCCCCCcchhhhhhHHHHHHHHHHHH
Q 016087           19 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETL   98 (395)
Q Consensus        19 d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~l   98 (395)
                      ..|++|||||+.+||+||+.+|+++++.|||+|+++... |.                                      
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------------   47 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------------   47 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------------
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------------
Confidence            447899999999999999999999999999999987422 10                                      


Q ss_pred             hhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc---
Q 016087           99 RIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE---  175 (395)
Q Consensus        99 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~---  175 (395)
                              .++.+.+...    ...    +..+.....++++.+++....  ....+..++.+++|++|++++|.+.   
T Consensus        48 --------~~~~l~l~~~----~~~----~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           48 --------LWQTLDLTGK----NLH----PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             --------TSSEEECTTC----BCC----HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred             --------hheeeccccc----cCC----HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHH
Confidence                    1111111100    000    122233333456665553211  1122233556788888888887754   


Q ss_pred             CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--E--eeCCCCCcceEEeccccc-----cch
Q 016087          176 SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEE-----LQR  245 (395)
Q Consensus       176 ~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~--~i~~~~~L~~L~i~~c~~-----l~~  245 (395)
                      .+ ....+++|++|++++|.+++..... +..+++|++|++++|..+..  +  .+..+++|++|++++|..     +..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            11 1236788888888888876555543 45588888888888854432  1  133567888888888832     233


Q ss_pred             hhccCC-ceeEEEEeCCC--C--cccccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCchh----
Q 016087          246 LCIIAQ-DVQEVSIQGPL--P--FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSI----  315 (395)
Q Consensus       246 l~~~~p-~L~~L~l~~~~--~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----  315 (395)
                      ....+| +|++|+++++.  .  ..++..+..+++|++|++++|. +++..+. .+..+++|++|++++|..+...    
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            344677 88888888873  1  2233445678888888888887 5554433 4567788888888888655432    


Q ss_pred             ccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeeeccee
Q 016087          316 NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLG  358 (395)
Q Consensus       316 ~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~  358 (395)
                      ...+++|+.|++++|..-..+..-..+|+.|+++++.++....
T Consensus       268 l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          268 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             HhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccC
Confidence            2346888888888772211222222345566677776654443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=2.8e-24  Score=216.94  Aligned_cols=37  Identities=19%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             ccccCCCCHHHHHHHhcCCC-cccchhhhhhhhhhhhh
Q 016087           18 IDRISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRA   54 (395)
Q Consensus        18 ~d~is~LPdeil~~Ils~L~-~~d~~r~~~vsrrWr~l   54 (395)
                      .|+|++|||||+.+||+||+ .+|++++++|||+|+++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            48899999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=2.8e-23  Score=209.58  Aligned_cols=187  Identities=10%  Similarity=0.100  Sum_probs=95.6

Q ss_pred             CCCCHHHHHHHhcCC-Ccccchhhhhhhhhhhhhccccce-eeecccccccc-------ccCCCCCcchhhhhh------
Q 016087           22 SNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSV-LKFDSDFFHQV-------FLEDSNDGSEAGKQK------   86 (395)
Q Consensus        22 s~LPdeil~~Ils~L-~~~d~~r~~~vsrrWr~lw~~~~~-l~~~~~~~~~~-------~~~~~~~~~~~~~~~------   86 (395)
                      ++|||||+.+||+|| +.+|++++++|||+|++++...+. +.+. ..+...       +|+ ...........      
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~   91 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPN-LRSLKLKGKPRAAMFNL   91 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTT-CSEEEEECSCGGGGGTC
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCC-CeEEEecCCcchhhccc
Confidence            379999999999999 899999999999999987533221 1111 001000       000 00000000000      


Q ss_pred             ----HHH-HHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecC-CCcccccccccC
Q 016087           87 ----LRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLG-NPRFNLPEIILC  160 (395)
Q Consensus        87 ----~~~-f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~l~~~l~~  160 (395)
                          ... ....+..+.. . -  +.++.+.+....    .. ...-.++......++++|++..+. .....++.....
T Consensus        92 ~~~~~~~~~~~~l~~l~~-~-~--~~L~~L~L~~~~----i~-~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  162 (592)
T 3ogk_B           92 IPENWGGYVTPWVTEISN-N-L--RQLKSVHFRRMI----VS-DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH  162 (592)
T ss_dssp             SCTTSCCBCHHHHHHHHH-H-C--TTCCEEEEESCB----CC-HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHh-h-C--CCCCeEEeeccE----ec-HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhh
Confidence                000 0001111111 1 1  245555555321    11 222233333333347777765432 112223333345


Q ss_pred             CCCccEEEEcceeccCCC-------ccCCCCCcEEEeeeeecC---hHHHHHHHcCCCCccEEeeecCC
Q 016087          161 SNSIEILTLAGLKLESPR-------SVKLSSLTKLFLMRVDAT---DLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~~~~-------~~~~~~Lk~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      |++|++|+|++|.+....       ...+++|++|+++++.++   ...+..++.+||+|++|++.+|.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            777777777777653211       125677777777777663   45666777777777777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.65  E-value=1.2e-15  Score=142.32  Aligned_cols=212  Identities=16%  Similarity=0.190  Sum_probs=153.4

Q ss_pred             hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      ..+++.|++.....  ..+|..++.+++|++|+|+++.+. .|.. ..+++|++|+|++|.+.  .+...+..+++|+.|
T Consensus        80 ~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence            36788888876443  478888888999999999998876 4433 37899999999999884  223347789999999


Q ss_pred             eeecCCCCceEe-----------eCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeE
Q 016087          214 SLQLCPGLKNLE-----------LSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR  280 (395)
Q Consensus       214 ~l~~c~~~~~~~-----------i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  280 (395)
                      ++++|...+.+.           +..+++|+.|++++|.  .++.....+++|++|+++++....++..++.+++|++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            999986543221           1237789999998875  333333467889999998887555555677888999999


Q ss_pred             ecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---cCCCccCEEecccCCCchhhh---hhCCCcceeEEeeee
Q 016087          281 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV  352 (395)
Q Consensus       281 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l~---~~~~~L~~L~~~~~~  352 (395)
                      +++|.+... +...+..+++|+.|++++|.....+.   ..+++|++|+|++|.....++   ..+++|+.+.+..+.
T Consensus       236 Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          236 LRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            988775543 23346778899999998887655443   356889999998877555444   567888888776553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.4e-15  Score=142.15  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=167.3

Q ss_pred             HHHHHHHHh-CCCcEEEEEecCCCcccccccccCC--CCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHH
Q 016087          128 DQCIFYALG-CNVKELSLELLGNPRFNLPEIILCS--NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQS  202 (395)
Q Consensus       128 ~~~l~~~~~-~~l~~L~l~~~~~~~~~l~~~l~~~--~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~  202 (395)
                      ..|-..... ..++.+++......    +..+...  ++++.|+++++.+.  .+....+++|++|+++++.+++..+..
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~  112 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG  112 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred             HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence            456555433 34677776432211    3334444  78999999998876  344458999999999999998877888


Q ss_pred             HHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEeccccc-----cchhhccCCceeEEEEeCC-CCcc--ccccccc
Q 016087          203 LLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEE-----LQRLCIIAQDVQEVSIQGP-LPFQ--CKFNLAS  272 (395)
Q Consensus       203 l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~-----l~~l~~~~p~L~~L~l~~~-~~~~--~~~~~~~  272 (395)
                      .+..||+|++|++++|.....  ..+..+++|++|++++|..     +..+...+++|++|+++++ ....  +...+..
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            899999999999999953311  1345689999999999953     3333447899999999998 4322  3445677


Q ss_pred             cc-ccceeEeccc--ccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchh----hhhhCC
Q 016087          273 CK-FLKYLRFALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVE----VKIAAS  341 (395)
Q Consensus       273 ~~-~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~----l~~~~~  341 (395)
                      ++ +|++|++++|  .+++..+...+..+++|+.|++++|..++..    ...+++|++|++++|..+..    ....++
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence            89 9999999999  6777788888899999999999999855421    23569999999998865542    246799


Q ss_pred             CcceeEEeeeeeec
Q 016087          342 SLSIFKYSGDVISF  355 (395)
Q Consensus       342 ~L~~L~~~~~~~~~  355 (395)
                      +|+.|+++++ ++.
T Consensus       273 ~L~~L~l~~~-i~~  285 (336)
T 2ast_B          273 TLKTLQVFGI-VPD  285 (336)
T ss_dssp             TCCEEECTTS-SCT
T ss_pred             CCCEEeccCc-cCH
Confidence            9999999998 544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.51  E-value=2.2e-14  Score=133.80  Aligned_cols=191  Identities=21%  Similarity=0.240  Sum_probs=148.1

Q ss_pred             CCCccEEEEcceecc-CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEE
Q 016087          161 SNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFE  236 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~-~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~  236 (395)
                      ..+++.|+|+++.+. .+. ...+++|++|+|+++.+.  .+...+..+++|++|++++|... .+  .+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999998876 343 347999999999999985  23334678999999999998643 22  345678999999


Q ss_pred             eccccccchhhc------------cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEE
Q 016087          237 VCDAEELQRLCI------------IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL  304 (395)
Q Consensus       237 i~~c~~l~~l~~------------~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L  304 (395)
                      +++|.....+..            .+++|+.|+++++....++..++.+++|++|++++|.++.  +...+..+++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence            999864333321            3899999999998755566668889999999999998773  33357889999999


Q ss_pred             EeeCCCCCchhc---cCCCccCEEecccCCCchhh---hhhCCCcceeEEeeeeeecc
Q 016087          305 LIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       305 ~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l---~~~~~~L~~L~~~~~~~~~~  356 (395)
                      ++++|.....+.   ..+++|++|+|++|.....+   ...+++|+.|++++|++...
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            999987665543   34689999999988765544   46799999999999876443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.48  E-value=4.3e-13  Score=125.86  Aligned_cols=207  Identities=14%  Similarity=0.098  Sum_probs=118.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEe
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~  214 (395)
                      ++++++++..+..  ..++ .+..+++|++|++++|.+. .+....+++|++|++++|.. ..-  . .+..+++|++|+
T Consensus        88 ~~L~~L~L~~n~i--~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~l~~L~~L~  161 (347)
T 4fmz_A           88 VKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL--S-PLSNMTGLNYLT  161 (347)
T ss_dssp             TTCCEEECCSSCC--CCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCC--G-GGTTCTTCCEEE
T ss_pred             CcCCEEEccCCcc--cCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccc--c-chhhCCCCcEEE
Confidence            4555555543321  1222 3445666666666665554 22233566666666666643 111  0 145566666666


Q ss_pred             eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087          215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                      +.+|.......+..+++|+.|++++|.  .+.. ....++|+.+.++++....... +..+++|++|++++|.++.... 
T Consensus       162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-
Confidence            666643322224455667777776664  2222 2256677777776665332222 5667788888888877654321 


Q ss_pred             HHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCCch--hhhhhCCCcceeEEeeeeeecc
Q 016087          293 NQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~l~--~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                        +..+++|++|+++++. +..+  ...+++|++|+++++. +.  .....+++|+.|++++|++...
T Consensus       239 --~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             --GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred             --hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCc
Confidence              6677888888888764 2222  2345788888887653 22  3346688888888888876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.47  E-value=6.2e-13  Score=124.74  Aligned_cols=208  Identities=17%  Similarity=0.109  Sum_probs=145.7

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~  214 (395)
                      ++++++++..+.  ...++. +..+++|+.|++++|...  .+....+++|++|+++++.+.....   +..+++|+.|+
T Consensus       110 ~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~  183 (347)
T 4fmz_A          110 TNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLS  183 (347)
T ss_dssp             TTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEE
T ss_pred             CcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEE
Confidence            688888885433  233444 677899999999998543  3334478999999999998832211   67899999999


Q ss_pred             eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087          215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                      +++|.......+..+++|+.|.+.++.  .+.. ...+++|++|+++++....... +..+++|++|+++++.++.-   
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---  258 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---  258 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---
Confidence            998864432235567788999888875  2222 2367889999998887444333 67788899999988876652   


Q ss_pred             HHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeecc
Q 016087          293 NQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      ..+..+++|+.|++++|. +..+  ...+++|+.|++++|.-..   .....+++|+.|++++|+++..
T Consensus       259 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            346778889999888874 2222  2356888888888764322   3346688888888888876543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.46  E-value=3.1e-13  Score=136.02  Aligned_cols=203  Identities=18%  Similarity=0.144  Sum_probs=136.8

Q ss_pred             cccccccCCCCccEEEEcceeccCC---C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeec----------C
Q 016087          153 NLPEIILCSNSIEILTLAGLKLESP---R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQL----------C  218 (395)
Q Consensus       153 ~l~~~l~~~~~L~~L~L~~~~~~~~---~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~----------c  218 (395)
                      .+|..+..+++|++|+|++|.+...   . ...+++|++|++. ..+.+..+..+...|++|++|++.+          |
T Consensus       284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            3444455677888888888764311   1 2367888888888 4456667777778888888888884          5


Q ss_pred             CCCceEe----eCCCCCcceEEecccc----ccchhhccCCceeEEEEeCCC----Ccc------cccccccccccceeE
Q 016087          219 PGLKNLE----LSGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPL----PFQ------CKFNLASCKFLKYLR  280 (395)
Q Consensus       219 ~~~~~~~----i~~~~~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~----~~~------~~~~~~~~~~L~~L~  280 (395)
                      .......    ...+++|++|.+..+.    .+..+...+|+|++|+++++.    ...      +...+..+++|++|+
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            5443221    1246789999884332    222333358899999997421    111      222356689999999


Q ss_pred             ecccc--cchHHHHHHhccCCCccEEEeeCCCCC----chhccCCCccCEEecccCCC----chhhhhhCCCcceeEEee
Q 016087          281 FALTH--IKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLR----LVEVKIAASSLSIFKYSG  350 (395)
Q Consensus       281 L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~~Lk~L~L~~~~~----l~~l~~~~~~L~~L~~~~  350 (395)
                      ++.|.  +++..+..+...+++|+.|++++|..-    ..+...+++|++|+|++|.-    +..+...+++|+.|++++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            97543  777777777778999999999987622    22345679999999998861    223446799999999999


Q ss_pred             eeeecc
Q 016087          351 DVISFQ  356 (395)
Q Consensus       351 ~~~~~~  356 (395)
                      |+++.+
T Consensus       523 n~it~~  528 (592)
T 3ogk_B          523 YRASMT  528 (592)
T ss_dssp             CBCCTT
T ss_pred             CcCCHH
Confidence            987655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=9.8e-13  Score=121.50  Aligned_cols=189  Identities=16%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++++++..+.  ...++ .+..+++|++|++++|.+. .+....+++|++|+++++.+..-  . .+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence            355665553322  12233 3444556666666665544 22223555555666555555221  0 1344555555555


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHh
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI  295 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  295 (395)
                      ++|.......+.                     .+++|++|+++++....+.. ++.+++|++|++++|.+++-.  . +
T Consensus       115 ~~n~l~~~~~l~---------------------~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l  169 (308)
T 1h6u_A          115 TSTQITDVTPLA---------------------GLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-L  169 (308)
T ss_dssp             TTSCCCCCGGGT---------------------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-G
T ss_pred             CCCCCCCchhhc---------------------CCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-h
Confidence            554322111122                     44556666665554322222 556677777777776655421  1 5


Q ss_pred             ccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecce
Q 016087          296 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQL  357 (395)
Q Consensus       296 ~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~~  357 (395)
                      ..+++|+.|+++++..-... ...+++|++|+++++.  .+.. ...+++|+.|++++++++...
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred             cCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence            66677777777765321111 2345677777776543  2222 356888888888888875533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.44  E-value=1e-12  Score=123.72  Aligned_cols=170  Identities=18%  Similarity=0.089  Sum_probs=121.9

Q ss_pred             CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +++++|++....  ...++. .+..+++|++|+++++.+.  .+. ...+++|++|+++++.++.- ....+..+++|++
T Consensus        52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            478888875433  334444 5667899999999998776  333 33789999999999988431 1234678999999


Q ss_pred             EeeecCCCCce---EeeCCCCCcceEEeccccccchh----hccCCceeEEEEeCCCCccc-ccccccccccceeEeccc
Q 016087          213 LSLQLCPGLKN---LELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALT  284 (395)
Q Consensus       213 L~l~~c~~~~~---~~i~~~~~L~~L~i~~c~~l~~l----~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~  284 (395)
                      |++++|....-   ..+..+++|+.|+++++..+..+    ....++|++|+++++..... +..++.+++|++|+++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            99999854321   13456889999999988523222    22678999999998864332 445778899999999999


Q ss_pred             ccchHHHHHHhccCCCccEEEeeCCC
Q 016087          285 HIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       285 ~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      .+.. ........+++|+.|+++++.
T Consensus       209 ~l~~-~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          209 QHIL-LLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred             cccc-chhhhhhhcccccEEECCCCc
Confidence            8753 233445668999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=8e-13  Score=132.99  Aligned_cols=107  Identities=20%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCCC------
Q 016087          106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESPR------  178 (395)
Q Consensus       106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~------  178 (395)
                      +.++.+.+....    .....+.. +.. ..+++++|++..+ ......++.....|++|++|+|++|.+....      
T Consensus       105 ~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          105 TWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             TTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             CCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            478888887542    11121111 111 2379999999765 2222335555557999999999998754211      


Q ss_pred             -ccCCCCCcEEEeeeee--cChHHHHHHHcCCCCccEEeeecC
Q 016087          179 -SVKLSSLTKLFLMRVD--ATDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       179 -~~~~~~Lk~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                       ...+++|++|+++++.  ++...+..++..||+|+.|++.+|
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             1267899999999886  577788888888999999999877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=6.4e-13  Score=123.02  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=119.5

Q ss_pred             CCcEEEEEecCCC-cccccccccCCCCccEEEEcc-eecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          138 NVKELSLELLGNP-RFNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       138 ~l~~L~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~-~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +++++++...... ...+|..+..+++|++|++++ +.+.  .|.. ..+++|++|+|+++.+... +...+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence            4555555543321 124566666677777777764 3332  2322 2667777777777766311 1112455677777


Q ss_pred             EeeecCCCCce--EeeCCCCCcceEEecccc---ccchhhccCC-ceeEEEEeCCCCc-ccccccccccccceeEecccc
Q 016087          213 LSLQLCPGLKN--LELSGLTKLNKFEVCDAE---ELQRLCIIAQ-DVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       213 L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~---~l~~l~~~~p-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~  285 (395)
                      |++++|.....  ..+..+++|++|+++++.   .+.......+ +|+.|+++++... ..+..+..+. |+.|+++++.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            77776642211  123455677777777664   1111122333 7777777766522 2233344444 7777777776


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCC---chhhhhhCCCcceeEEeeeeeecc
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLR---LVEVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~---l~~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      +... ....+..+++|+.|+++++.....+  ...+++|++|+++++.-   ++.....+++|+.|++++|+++..
T Consensus       209 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            5532 2344566777777777776422111  22347777777776542   223345677788888887776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.42  E-value=5e-13  Score=134.97  Aligned_cols=171  Identities=16%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      ++++++++....  ...+|..+..+++|++|++++|.+.  .+ ....+++|++|+++++.+........+..+++|++|
T Consensus       278 ~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            456666654322  2356666666677777777766554  11 222566666666666654211111124456666666


Q ss_pred             eeecCCCCceE----eeCCCCCcceEEecccc--cc-chhhccCCceeEEEEeCCCCccc--ccccccccccceeEeccc
Q 016087          214 SLQLCPGLKNL----ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALT  284 (395)
Q Consensus       214 ~l~~c~~~~~~----~i~~~~~L~~L~i~~c~--~l-~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~  284 (395)
                      ++++|......    .+..+++|+.|++++|.  .+ ......+++|++|+++++.....  ...+..+++|+.|+++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            66665433211    23345566666666653  11 11112345566666655542111  112344555555555555


Q ss_pred             ccchHHHHHHhccCCCccEEEeeCCC
Q 016087          285 HIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       285 ~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      .+... ....+..+++|++|+++++.
T Consensus       436 ~l~~~-~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          436 LLDIS-SEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             CCBTT-CTTTTTTCTTCCEEECTTCB
T ss_pred             ccCCc-CHHHHhCCCCCCEEECCCCC
Confidence            44321 12233445555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.41  E-value=7.3e-13  Score=129.03  Aligned_cols=212  Identities=14%  Similarity=0.042  Sum_probs=144.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      .+++.|++...... .-.+..+..+++|+.|+|+++.+.  .+.. ..+++|++|+|++|.+..-. ...+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence            47788877543321 122445667888999999988765  3333 37889999999988873211 1235678899999


Q ss_pred             eeecCCCCceE---eeCCCCCcceEEeccccccchhh----ccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087          214 SLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       214 ~l~~c~~~~~~---~i~~~~~L~~L~i~~c~~l~~l~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      ++++|... .+   .+..+++|+.|++.+|..+..+.    ...++|++|+++++....++ .+..+++|+.|+|++|.+
T Consensus       153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            99888643 22   23467899999998876444432    25788999999888744433 466788999999999887


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                      +.. ....+..+++|+.|+++++..-..   ....+++|+.|+|+++.  .+. .....+++|+.|++++|+.
T Consensus       231 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          231 PEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             ccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            642 234567889999999988753221   22346889999998652  222 3345688999999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.40  E-value=4.9e-12  Score=123.69  Aligned_cols=103  Identities=10%  Similarity=0.012  Sum_probs=56.6

Q ss_pred             cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch-hccCCCccCEEec
Q 016087          249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS-INISSRSLKLLEI  327 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~~~~~~Lk~L~L  327 (395)
                      .+++|+.|+++++....... ++.+++|+.|++++|.+++...   +..+++|+.|++++|.--.. ....+++|+.|++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA  360 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeC
Confidence            34555555555554222221 4456666666666665544221   45566666666666531111 1224577777777


Q ss_pred             ccCCCchhh-hhhCCCcceeEEeeeeeec
Q 016087          328 YDCLRLVEV-KIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       328 ~~~~~l~~l-~~~~~~L~~L~~~~~~~~~  355 (395)
                      +++.-.... ...+++|+.|++++|+++.
T Consensus       361 ~~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          361 GHNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCccchhhcCCCCCEEeccCCcccC
Confidence            755422211 3567888888888887655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.39  E-value=8.1e-13  Score=121.76  Aligned_cols=203  Identities=20%  Similarity=0.188  Sum_probs=110.9

Q ss_pred             cccccccccCCCCccEEEEcceecc-CCCc--cCCCCCcEEEeeeeecChH-HHHHHHcCCCCccEEeeecCCCCce-Ee
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LE  225 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~--~~~~~Lk~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~c~~~~~-~~  225 (395)
                      ...+|..+  .++|++|+++++.+. .+..  ..+++|++|+|+++.+... .....+..+++|++|++++|....- ..
T Consensus        19 l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence            34445433  246777777776655 2221  2677777777777766311 0011223467777777777643211 12


Q ss_pred             eCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCC
Q 016087          226 LSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPL  300 (395)
Q Consensus       226 i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  300 (395)
                      +..+++|++|+++++.  .+..  .....++|++|+++++.... .+..+..+++|++|+++++.+.+......+..+++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            4456677777777664  2221  12255677777777665322 22235556777777777776554333344566677


Q ss_pred             ccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087          301 LESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       301 L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      |+.|+++++.--..   ....+++|+.|+++++.  .+. .....+++|+.|++++|++..
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            77777776642211   12234677777776543  121 123456777777777776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.39  E-value=5.5e-13  Score=138.48  Aligned_cols=168  Identities=17%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCc--cCCCCCcEEEeeeeecChHHHH--HHHcCCC
Q 016087          137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATDLVLQ--SLLIGCP  208 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~--~~~~~Lk~L~L~~~~~~~~~l~--~l~~~~p  208 (395)
                      +++++|+|..... ...+|.  .+..+++|++|+|++|.+.  .+..  ..+++|++|+|+++.++.....  ..+..++
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            5788888764322 123555  6778899999999988765  2222  4788999999999988332222  2367788


Q ss_pred             CccEEeeecCCCCceEeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCc-ccccccccccccceeEeccc
Q 016087          209 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT  284 (395)
Q Consensus       209 ~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~  284 (395)
                      +|++|++++|..........+++|+.|++++|.-   ++. ...+++|++|+++++... ..+..++.+++|++|++++|
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN  257 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence            8888888887543333445667777777777751   222 225667777777766532 23334556666666666666


Q ss_pred             ccchHHHHHHhccCCCccEEEeeCC
Q 016087          285 HIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       285 ~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      .+......   ..+++|++|+++++
T Consensus       258 ~l~~~~~~---~~l~~L~~L~L~~n  279 (768)
T 3rgz_A          258 QFVGPIPP---LPLKSLQYLSLAEN  279 (768)
T ss_dssp             CCEESCCC---CCCTTCCEEECCSS
T ss_pred             cccCccCc---cccCCCCEEECcCC
Confidence            54421100   14455555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.39  E-value=4.6e-12  Score=123.82  Aligned_cols=207  Identities=17%  Similarity=0.096  Sum_probs=154.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++++++....   ..++ .+..+++|+.|++++|.+. .+....+++|++|+++++.+.....   +..+++|++|++
T Consensus       156 ~~L~~L~l~~~~---~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l  228 (466)
T 1o6v_A          156 TSLQQLSFGNQV---TDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSL  228 (466)
T ss_dssp             TTCSEEEEEESC---CCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEEC
T ss_pred             CcccEeecCCcc---cCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEEC
Confidence            689999986422   2223 2678999999999999876 3334489999999999999833211   567999999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      ++|.......+..+++|+.|++++|.  .+.. ...+++|+.|+++++....... +..+++|+.|+++++.+.+-.   
T Consensus       229 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~---  303 (466)
T 1o6v_A          229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS---  303 (466)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG---
T ss_pred             CCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch---
Confidence            99864432245567899999999986  2222 2367899999999987444333 778999999999999876532   


Q ss_pred             HhccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCCCch--hhhhhCCCcceeEEeeeeeecc
Q 016087          294 QISKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       294 l~~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~~l~--~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      .+..+++|+.|++++|.-.... ...+++|+.|+++++. +.  .-...+++|+.|++++|++...
T Consensus       304 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          304 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCcc
Confidence            2678999999999998533222 2457999999998763 33  2346799999999999987443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.39  E-value=2.1e-12  Score=117.71  Aligned_cols=202  Identities=16%  Similarity=0.108  Sum_probs=139.7

Q ss_pred             CCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087          149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  224 (395)
Q Consensus       149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-  224 (395)
                      .+...+|..+  .++|++|+++++.+.  .+. ...+++|++|+++++.+..-. ...+..+++|++|++++|..+..+ 
T Consensus        21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~   97 (285)
T 1ozn_A           21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVD   97 (285)
T ss_dssp             SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccC
Confidence            3344555433  468999999988776  222 337899999999998873211 123567899999999998644332 


Q ss_pred             --eeCCCCCcceEEecccc--cc-chhhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccC
Q 016087          225 --ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKF  298 (395)
Q Consensus       225 --~i~~~~~L~~L~i~~c~--~l-~~l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  298 (395)
                        .+..+++|+.|+++++.  .+ .......++|++|+++++....+.. .++.+++|++|+++++.++.- ....+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l  176 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGL  176 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTC
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCc
Confidence              34567899999999885  22 1122357899999999887444333 367789999999999887632 22346778


Q ss_pred             CCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          299 PLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       299 ~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                      ++|+.|+++++..-..   ....+++|+.|+++++.  .+. .....+++|+.|++++|++.
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            9999999998753322   22346899999998653  222 33567899999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=1.7e-12  Score=120.29  Aligned_cols=218  Identities=18%  Similarity=0.077  Sum_probs=150.7

Q ss_pred             hhHHHHHHHHHh--CCCcEEEEEecCCCccccc-ccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHH
Q 016087          125 PYIDQCIFYALG--CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVL  200 (395)
Q Consensus       125 ~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l  200 (395)
                      ..+...+.....  +++++|++.....  ..++ ..+..+++|++|+|++|.+. .+....+++|++|++++|.++.   
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~---   94 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE---   94 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence            444555544432  5788888865332  2333 45677899999999998775 2224478999999999998843   


Q ss_pred             HHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcccc-cc-cccccc
Q 016087          201 QSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCK-FN-LASCKF  275 (395)
Q Consensus       201 ~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~~~-~~-~~~~~~  275 (395)
                         +..++.|+.|++++|... ......+++|+.|+++++.  .+.... ...++|++|+++++...... .. ...+++
T Consensus        95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence               234689999999998643 4445567899999999885  222222 25789999999988744322 22 346789


Q ss_pred             cceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeee
Q 016087          276 LKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGD  351 (395)
Q Consensus       276 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~  351 (395)
                      |++|++++|.++.-   .....+++|+.|+++++.--  ......+++|+.|+++++.  .++.....+++|+.|++++|
T Consensus       171 L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          171 LEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             CCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence            99999999987643   12234789999999987522  1223356899999998653  22333456889999999999


Q ss_pred             eee
Q 016087          352 VIS  354 (395)
Q Consensus       352 ~~~  354 (395)
                      ++.
T Consensus       248 ~~~  250 (317)
T 3o53_A          248 GFH  250 (317)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.39  E-value=5.5e-13  Score=123.50  Aligned_cols=213  Identities=9%  Similarity=0.029  Sum_probs=153.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      +++++|++.....-...+|..+..+++|++|+|+++.+.  .+... .+++|++|+++++.+... +...+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            789999998422223467888889999999999998875  44433 899999999999988421 12236779999999


Q ss_pred             eeecCCCCceE--eeCCCC-CcceEEecccc---ccchhhccCCceeEEEEeCCCCc-ccccccccccccceeEeccccc
Q 016087          214 SLQLCPGLKNL--ELSGLT-KLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       214 ~l~~c~~~~~~--~i~~~~-~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      ++++|.....+  .+..++ +|+.|+++++.   .+....... +|+.|+++++... ..+..+..+++|+.|+++++.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            99998643222  334555 99999999986   112222233 3999999998632 2455678899999999999987


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCC---chhccCCCccCEEecccCCCchhhh--hhCCCcceeEEeeeee
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSGDVI  353 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l---~~~~~~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~~~~  353 (395)
                      +...  ..+..+++|++|+++++...   ......+++|++|+|+++.-...++  ..+++|+.+++.+|+.
T Consensus       234 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          234 AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCBG--GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             eeec--CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence            6432  22577899999999998633   2233456899999998764322332  5678899999998873

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=9.4e-13  Score=127.80  Aligned_cols=212  Identities=13%  Similarity=0.052  Sum_probs=126.9

Q ss_pred             CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      .+++.|++.....  ..+ +..+..+++|+.|+|++|.+.  .+..+ .+++|++|+|++|.++.-. ...+..+++|++
T Consensus        64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            3566666644322  222 234556777888888777665  22222 6777888888877763211 113456777888


Q ss_pred             EeeecCCCCceE--eeCCCCCcceEEeccccccchhh----ccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087          213 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       213 L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~~l~~l~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      |++++|......  .+..+++|+.|++.+|..+..+.    ...++|++|+++++....++ .+..+++|+.|+|++|.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence            888777533111  23456778888887765333322    24677888888777643333 356677888888888776


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                      +.- ....+..+++|+.|+++++..-..   ....+++|+.|+|+++.  .+. .....+++|+.|++++|+.
T Consensus       220 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             Ccc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            542 133456778888888877642211   12245778888887542  111 2335577888888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.38  E-value=3.2e-12  Score=124.56  Aligned_cols=199  Identities=15%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  216 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~  216 (395)
                      +++++|++......  .+|  +..+++|++|++++|.+.......+++|++|+++++.+..-  .  +..+++|+.|+++
T Consensus        64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECT
T ss_pred             CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECC
Confidence            45555555443221  122  34455666666666555421223556666666666655321  1  4556666666666


Q ss_pred             cCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHh
Q 016087          217 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI  295 (395)
Q Consensus       217 ~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  295 (395)
                      +|... .+.+..+++|+.|++++|..+..+.+ ..++|+.|+++++....++  ++.+++|+.|+++++.++.-    -+
T Consensus       136 ~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l  208 (457)
T 3bz5_A          136 RNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DL  208 (457)
T ss_dssp             TSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CC
T ss_pred             CCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----cc
Confidence            65322 23445556666666666643333322 4566666666665533322  55566677777766665542    14


Q ss_pred             ccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCCCchhhhhhCCCcceeEEeee
Q 016087          296 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD  351 (395)
Q Consensus       296 ~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~  351 (395)
                      ..+++|+.|+++++.-- .+ ...+++|+.|+++++.--..-...+++|+.|+++++
T Consensus       209 ~~l~~L~~L~Ls~N~l~-~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n  264 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT  264 (457)
T ss_dssp             TTCTTCSEEECCSSCCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred             ccCCCCCEEECcCCccc-ccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence            55666777777665321 12 223466777777644211111234555554444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=3.6e-12  Score=124.90  Aligned_cols=215  Identities=15%  Similarity=0.138  Sum_probs=130.5

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      +++++|++..... ....+..+..+++|++|+++++.+.  .+. ...+++|++|+|+++.++.-. ...+..+++|+.|
T Consensus       104 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L  181 (477)
T 2id5_A          104 SNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVL  181 (477)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEE
T ss_pred             CCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEE
Confidence            4556655533221 1112334445667777777766544  222 226777777777777763211 2235667778888


Q ss_pred             eeecCCCCce--EeeCCCCCcceEEeccccccchh---hccCCceeEEEEeCCCCcccc-cccccccccceeEecccccc
Q 016087          214 SLQLCPGLKN--LELSGLTKLNKFEVCDAEELQRL---CIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       214 ~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~l~~l---~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~  287 (395)
                      ++.+|.....  ..+..+++|+.|++++|..+..+   ....++|++|+++++....++ ..+..+++|+.|+|+++.++
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            8777753311  12345678888888877532222   234458888888887644333 24667888888888888765


Q ss_pred             hHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          288 DEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                      .-. ...+..+++|+.|+|+++..-..   ....+++|+.|+|+++.  .+. .....+++|+.|++++|++.
T Consensus       262 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          262 TIE-GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EEC-TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccC-hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            322 23456788888888888752221   22346889999988653  222 33456788999999888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.36  E-value=1.6e-12  Score=130.04  Aligned_cols=56  Identities=21%  Similarity=0.185  Sum_probs=32.6

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCCcEEEeeeeec
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDA  195 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~Lk~L~L~~~~~  195 (395)
                      ++++.+++....  ...+|..+..+ +|++|++++|.+..-....+++|++|++.++..
T Consensus       282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred             CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence            678888886533  23566666666 777777777665511123455555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=1.1e-12  Score=125.06  Aligned_cols=221  Identities=17%  Similarity=0.082  Sum_probs=129.8

Q ss_pred             CCCcEEEEEecCCC---cccccccccCCCCccEEEEcceecc-----CCCc--------cCCCCCcEEEeeeeecChH--
Q 016087          137 CNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLE-----SPRS--------VKLSSLTKLFLMRVDATDL--  198 (395)
Q Consensus       137 ~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~-----~~~~--------~~~~~Lk~L~L~~~~~~~~--  198 (395)
                      +++++|++..+...   ...++..+..+++|++|+|++|.+.     .|..        ..+++|++|+|++|.++..  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            55666666432211   1123333456777777777776432     1111        2567777888877777433  


Q ss_pred             -HHHHHHcCCCCccEEeeecCCCCce--Eee----CCC---------CCcceEEecccc----ccchh---hccCCceeE
Q 016087          199 -VLQSLLIGCPLIEYLSLQLCPGLKN--LEL----SGL---------TKLNKFEVCDAE----ELQRL---CIIAQDVQE  255 (395)
Q Consensus       199 -~l~~l~~~~p~Le~L~l~~c~~~~~--~~i----~~~---------~~L~~L~i~~c~----~l~~l---~~~~p~L~~  255 (395)
                       .+...+..+++|+.|++++|.....  ..+    ..+         ++|++|.+++|.    .+..+   ...+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             3444556777788888877753200  011    112         577888887774    12211   125678888


Q ss_pred             EEEeCCCCcc------cccccccccccceeEecccccchH---HHHHHhccCCCccEEEeeCCCCCch----hcc-----
Q 016087          256 VSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIAGCDDLKS----INI-----  317 (395)
Q Consensus       256 L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~l~~----~~~-----  317 (395)
                      |.++++....      .+..+..+++|++|+|++|.+++.   .+...+..+++|++|+|++|.--..    +..     
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            8888776331      111456678888888888887643   3344567778888888888762211    111     


Q ss_pred             CCCccCEEecccCCCch----hhh----hhCCCcceeEEeeeeeecce
Q 016087          318 SSRSLKLLEIYDCLRLV----EVK----IAASSLSIFKYSGDVISFQL  357 (395)
Q Consensus       318 ~~~~Lk~L~L~~~~~l~----~l~----~~~~~L~~L~~~~~~~~~~~  357 (395)
                      .+++|++|+|+++.--.    .++    .++++|++|++++|+++...
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            26788888887654222    122    45788888888888776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.36  E-value=1.3e-12  Score=131.90  Aligned_cols=195  Identities=19%  Similarity=0.088  Sum_probs=121.2

Q ss_pred             CCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChH-HHHHHHcCCCCccEEeeecCCCCce-EeeCCCCCcceEE
Q 016087          160 CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFE  236 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~~L~~L~  236 (395)
                      .+++|+.|++++|... ......+++|++|+++++.+... .....+..++.|++|++++|..... ..+..+++|+.|+
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence            4444555555444221 11222566666666666665211 1122355677777777777642211 1234567888888


Q ss_pred             ecccc--ccch--hhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCC
Q 016087          237 VCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDD  311 (395)
Q Consensus       237 i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  311 (395)
                      +++|.  ....  ....+++|++|+++++.... .+..++.+++|++|++++|.+.+..+...+..+++|+.|++++|..
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            88775  2211  22367888888888876332 3344677889999999888876543455667889999999998853


Q ss_pred             Cchh---ccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeeee
Q 016087          312 LKSI---NISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       312 l~~~---~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~~  354 (395)
                      ....   ...+++|++|+++++.-.   +.....+++|+.|++++|+++
T Consensus       486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            3222   235688999999876422   233466889999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.36  E-value=4.1e-12  Score=123.60  Aligned_cols=217  Identities=14%  Similarity=0.042  Sum_probs=113.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccC--C-C--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES--P-R--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~--~-~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le  211 (395)
                      +++++|++..... ....|..+..+++|++|++++|.+..  + .  ...+++|++|+|+++.+.......++..+++|+
T Consensus        79 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           79 SSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             TTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             ccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            4666666643221 12224455567777777777766541  1 1  225677777777777763322222355677777


Q ss_pred             EEeeecCCCCce---------------Ee---------------------eCCCCCcceEEeccccccch----h-----
Q 016087          212 YLSLQLCPGLKN---------------LE---------------------LSGLTKLNKFEVCDAEELQR----L-----  246 (395)
Q Consensus       212 ~L~l~~c~~~~~---------------~~---------------------i~~~~~L~~L~i~~c~~l~~----l-----  246 (395)
                      +|++++|.....               +.                     +..+++|+.|++++|.-...    +     
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  237 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA  237 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence            777776632100               00                     00113566666665530000    0     


Q ss_pred             ---------------------------------hccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHH
Q 016087          247 ---------------------------------CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       247 ---------------------------------~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                                                       ....++|++|+++++.... .+..++.+++|++|+++++.+.... .
T Consensus       238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~  316 (455)
T 3v47_A          238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-D  316 (455)
T ss_dssp             TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-T
T ss_pred             ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-h
Confidence                                             0011345555554443221 1223556677777777777655321 2


Q ss_pred             HHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeeeec
Q 016087          293 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      ..+..+++|+.|+++++.--..   ....+++|++|+|+++.--   +.....+++|+.|++++|.+..
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            2445677777777777642211   1234577777777755321   1223557777777777776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=2.6e-12  Score=126.30  Aligned_cols=207  Identities=19%  Similarity=0.068  Sum_probs=143.3

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++.|++...... ...|..+..+++|++|+|++|.+. .+....+++|++|+|++|.++.      +...+.|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            37888888654332 122346678899999999998775 2224478999999999998843      234589999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcc-ccccc-ccccccceeEecccccchHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQ-CKFNL-ASCKFLKYLRFALTHIKDEW  290 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~L~~~~~~~~~  290 (395)
                      ++|... .+....+++|+.|++++|.  .+.... ..+++|++|+++++.... .+..+ +.+++|+.|+|++|.++.. 
T Consensus       107 ~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          107 ANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             cCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            998643 3344567899999999886  222222 357899999999887433 22233 3678999999999987643 


Q ss_pred             HHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeee
Q 016087          291 LCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       291 ~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                        .....+++|+.|+|+++.--  ......+++|+.|+|+++.  .++.....+++|+.|++++|++.
T Consensus       185 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 --KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             --ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             --cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence              22345889999999987522  1122356889999998643  23333456789999999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.35  E-value=1.2e-12  Score=135.95  Aligned_cols=192  Identities=15%  Similarity=0.049  Sum_probs=134.4

Q ss_pred             CCcEEEEEe-cCCCcccccccccCCCCccEEEEcceecc--CCC---ccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087          138 NVKELSLEL-LGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       138 ~l~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~---~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le  211 (395)
                      ++++|++.. ...+...+|..+..+++|++|+|++|.+.  .+.   ...+++|++|+|++|.+.......++..+++|+
T Consensus        75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence            455555433 33334566778889999999999998875  333   338999999999999874322222336789999


Q ss_pred             EEeeecCCCCceEe-----eCCCCCcceEEeccccccchhh-ccCCceeEEEEeCCCCcccccccccccccceeEecccc
Q 016087          212 YLSLQLCPGLKNLE-----LSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       212 ~L~l~~c~~~~~~~-----i~~~~~L~~L~i~~c~~l~~l~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~  285 (395)
                      +|++++|.......     +..+++|++|++++|.-..... ..+++|++|+++++........++.+++|++|+++++.
T Consensus       155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK  234 (768)
T ss_dssp             EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred             EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence            99999996432211     5678899999999986211111 47899999999998743322238889999999999999


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCchhc-cCCCccCEEecccC
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDC  330 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~Lk~L~L~~~  330 (395)
                      +++. +...+..+++|++|++++|.....+. ..+++|++|+++++
T Consensus       235 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n  279 (768)
T 3rgz_A          235 LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN  279 (768)
T ss_dssp             CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred             CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence            8754 35567899999999999985332211 13455666655543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.34  E-value=3.7e-12  Score=129.41  Aligned_cols=214  Identities=10%  Similarity=0.021  Sum_probs=133.3

Q ss_pred             CCCcEEEEEecCCCcc----------------ccccccc--CCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeee-
Q 016087          137 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD-  194 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~-  194 (395)
                      .++++|++........                .+|..+.  .+++|++|+|++|.+.  .|... .+++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            6899999976443210                1888888  9999999999998765  44433 79999999999998 


Q ss_pred             cChHHHHHHH------cCCCCccEEeeecCCCCceE---eeCCCCCcceEEecccc---ccchhhccCCceeEEEEeCCC
Q 016087          195 ATDLVLQSLL------IGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPL  262 (395)
Q Consensus       195 ~~~~~l~~l~------~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~  262 (395)
                      ++...+..-+      ..+++|+.|++.+|....-.   .+..+++|+.|+++++.   .++ .....++|++|+++++.
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            6652233223      34589999999998654211   35677889999998885   222 11245788888888776


Q ss_pred             Ccccccccccccc-cceeEecccccchHHHHHHhccC--CCccEEEeeCCCCCchhcc----------CCCccCEEeccc
Q 016087          263 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKF--PLLESLLIAGCDDLKSINI----------SSRSLKLLEIYD  329 (395)
Q Consensus       263 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~--~~L~~L~L~~~~~l~~~~~----------~~~~Lk~L~L~~  329 (395)
                      ...++..+..+++ |++|+++++.++  .+...+...  ++|+.|+++++.....+..          .+++|++|++++
T Consensus       365 l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~  442 (636)
T 4eco_A          365 ITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN  442 (636)
T ss_dssp             EEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred             cccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence            4444445666777 888888777765  222222222  3677777766542221111          234566666654


Q ss_pred             CC--Cch-hhhhhCCCcceeEEeeeee
Q 016087          330 CL--RLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       330 ~~--~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                      +.  .++ .+...+++|+.|++++|.+
T Consensus       443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          443 NQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             CccCcCCHHHHccCCCCCEEECCCCCC
Confidence            32  111 1223355555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=3.4e-12  Score=125.06  Aligned_cols=215  Identities=17%  Similarity=0.080  Sum_probs=136.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCC-c-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~-~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      +++++|++..... ....|..+.++++|++|+|+++.+. .+. . ..+++|++|+|+++.+... ....+..+++|+.|
T Consensus        56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence            5777777754322 1122455667888888888887765 222 2 3678888888888877321 11235678888888


Q ss_pred             eeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccc
Q 016087          214 SLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       214 ~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~  287 (395)
                      ++.+|.....  ..+..+++|+.|++.+|.  .+..- ...+++|+.|+++++..... ...+..+++|+.|+++++...
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            8888753311  134567788888888875  22211 23678888888888763332 234667888888888877643


Q ss_pred             hHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087          288 DEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      ...... .....+|+.|+++++. ++.+    ...+++|+.|+|+++.  .+. .....+++|+.|+++++.+..
T Consensus       214 ~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          214 DTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             CEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             cccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence            322111 2233488999988874 2222    2356899999998654  111 234678999999999987643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=7.6e-12  Score=121.92  Aligned_cols=223  Identities=12%  Similarity=0.074  Sum_probs=155.5

Q ss_pred             ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCC
Q 016087          106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSL  185 (395)
Q Consensus       106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~L  185 (395)
                      ..++.+.+....-.      .++    ....+++++|++......  .++  +..+++|++|+++++.+..-....+++|
T Consensus        64 ~~L~~L~Ls~n~l~------~~~----~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L  129 (457)
T 3bz5_A           64 TGLTKLICTSNNIT------TLD----LSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL  129 (457)
T ss_dssp             TTCSEEECCSSCCS------CCC----CTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTC
T ss_pred             CCCCEEEccCCcCC------eEc----cccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCeecCCCCCcC
Confidence            47788777644211      111    112368888888654432  233  6678999999999988763224478999


Q ss_pred             cEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCc
Q 016087          186 TKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPF  264 (395)
Q Consensus       186 k~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~  264 (395)
                      ++|+++++.++.-  .  +..+++|++|++.+|.....+.+..+++|+.|+++++. +..+.+ .+++|+.|.++++...
T Consensus       130 ~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          130 TYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC
Confidence            9999999998442  1  67899999999999976666667788899999999885 333333 6789999999988744


Q ss_pred             ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCc----------cCEEecccCCCch
Q 016087          265 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRS----------LKLLEIYDCLRLV  334 (395)
Q Consensus       265 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~----------Lk~L~L~~~~~l~  334 (395)
                      .+  .++.+++|+.|+++++.++.-   . +..+++|+.|+++++.--......+++          |+.|+++++....
T Consensus       205 ~~--~l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          205 KL--DLNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI  278 (457)
T ss_dssp             CC--CCTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             ee--ccccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence            33  477889999999999987762   2 678899999999987422111223344          4555555555444


Q ss_pred             hhh-hhCCCcceeEEeeeee
Q 016087          335 EVK-IAASSLSIFKYSGDVI  353 (395)
Q Consensus       335 ~l~-~~~~~L~~L~~~~~~~  353 (395)
                      .++ ..|++|+.|++++|..
T Consensus       279 ~~~~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          279 YFQAEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             EEECTTCTTCCCCCCTTCTT
T ss_pred             cccccccccCCEEECCCCcc
Confidence            444 4689999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.34  E-value=4e-13  Score=124.35  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             CCCCccEEEEcceecc--CCCc---cCCCCCcEEEeeeeecChH--HHHHHHc-CCCCccEEeeecCCCCce--EeeCCC
Q 016087          160 CSNSIEILTLAGLKLE--SPRS---VKLSSLTKLFLMRVDATDL--VLQSLLI-GCPLIEYLSLQLCPGLKN--LELSGL  229 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~--~~~~---~~~~~Lk~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~l~~c~~~~~--~~i~~~  229 (395)
                      .+++|++|+|++|.+.  .+..   ..+++|++|+|+++.++..  .+..+.. ..++|++|++++|.....  ..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6789999999998875  3332   4789999999999998432  2322211 138999999999864321  134567


Q ss_pred             CCcceEEeccccccch------hh-ccCCceeEEEEeCCCCcccc----cccccccccceeEecccccchHHHHHHhccC
Q 016087          230 TKLNKFEVCDAEELQR------LC-IIAQDVQEVSIQGPLPFQCK----FNLASCKFLKYLRFALTHIKDEWLCNQISKF  298 (395)
Q Consensus       230 ~~L~~L~i~~c~~l~~------l~-~~~p~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  298 (395)
                      ++|+.|+++++.-...      +. ...++|++|+++++......    ..+..+++|++|++++|.+++......+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            8899999988852211      11 35688888888887643211    1234568888888888877653212334556


Q ss_pred             CCccEEEeeCCCCCchhccCC-CccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087          299 PLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       299 ~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      ++|+.|+++++. ++.+.... ++|++|+++++.  .++. ...+++|+.|++++|+++.
T Consensus       253 ~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            888888888875 23333222 688888887542  2223 4568888888888887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.34  E-value=2.1e-12  Score=130.40  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCccc-c-cccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087          228 GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-K-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES  303 (395)
Q Consensus       228 ~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  303 (395)
                      .+++|+.|++++|.  .+......+++|+.|+++++..... + ..+..+++|++|++++|.+... ....+..+++|++
T Consensus       374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  452 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNT  452 (606)
T ss_dssp             CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCE
T ss_pred             cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCE
Confidence            34455555555543  1111112345555555555542211 1 2344566666666666654432 1233456677777


Q ss_pred             EEeeCCCCCc----hhccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeec
Q 016087          304 LLIAGCDDLK----SINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       304 L~L~~~~~l~----~~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      |+++++....    .....+++|+.|+++++.-..   .....+++|++|++++|++..
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  511 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF  511 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence            7776664222    122345788888887663221   334568888888888887643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=9.1e-12  Score=118.80  Aligned_cols=212  Identities=13%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc-CCCc--cCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~-~~~~--~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +++++|++....  ...+ |..+..+++|++|+++++.+. .+..  ..+++|++|+++++.+..-. ...+..+++|++
T Consensus        93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  169 (390)
T 3o6n_A           93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN  169 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred             CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence            455666654322  1222 223345566666666666554 2221  24666666666666552110 112345566666


Q ss_pred             EeeecCCCCceEeeCCCC-------------------CcceEEeccccccchhh-ccCCceeEEEEeCCCCccccccccc
Q 016087          213 LSLQLCPGLKNLELSGLT-------------------KLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLAS  272 (395)
Q Consensus       213 L~l~~c~~~~~~~i~~~~-------------------~L~~L~i~~c~~l~~l~-~~~p~L~~L~l~~~~~~~~~~~~~~  272 (395)
                      |++++|... ...+..++                   +|+.|+++++. +..+. ...++|+.|+++++..... ..+..
T Consensus       170 L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~  246 (390)
T 3o6n_A          170 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLN  246 (390)
T ss_dssp             EECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred             EECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcC
Confidence            666655321 11222233                   44444444442 11111 1235666666666653322 23556


Q ss_pred             ccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEE
Q 016087          273 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKY  348 (395)
Q Consensus       273 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~  348 (395)
                      +++|++|+++++.+... ....+..+++|+.|+++++.--  ......+++|+.|+++++.  .++.-...+++|+.|++
T Consensus       247 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL  325 (390)
T ss_dssp             CTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred             CCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence            67777777777765532 1234556777777777775421  1112245777777777552  22222345677777777


Q ss_pred             eeeeeec
Q 016087          349 SGDVISF  355 (395)
Q Consensus       349 ~~~~~~~  355 (395)
                      ++|++..
T Consensus       326 ~~N~i~~  332 (390)
T 3o6n_A          326 DHNSIVT  332 (390)
T ss_dssp             CSSCCCC
T ss_pred             CCCccce
Confidence            7776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.34  E-value=5.2e-13  Score=123.09  Aligned_cols=214  Identities=14%  Similarity=0.086  Sum_probs=145.2

Q ss_pred             CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceeccC-----CCccCCCCCcEEEeeeeecChHHHHHHHcCCCCc
Q 016087          137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI  210 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~-----~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~L  210 (395)
                      +++++|++....  ...+|.. +..+++|++|+|+++.+..     .....+++|++|+++++.+..  +...+..+++|
T Consensus        28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            467777775533  3356654 3578899999999887651     122368899999999888732  11125678999


Q ss_pred             cEEeeecCCCCce---EeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCcc--cccccccccccceeEec
Q 016087          211 EYLSLQLCPGLKN---LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFA  282 (395)
Q Consensus       211 e~L~l~~c~~~~~---~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~  282 (395)
                      ++|++++|.....   ..+..+++|+.|+++++.-   ........++|++|+++++....  .+..+..+++|++|+++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            9999988743211   1345678999999998851   11222357899999998876332  44557788999999999


Q ss_pred             ccccchHHHHHHhccCCCccEEEeeCCCCCc--h-hccCCCccCEEecccCCCch---hhhhhC-CCcceeEEeeeeeec
Q 016087          283 LTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S-INISSRSLKLLEIYDCLRLV---EVKIAA-SSLSIFKYSGDVISF  355 (395)
Q Consensus       283 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~-~~~~~~~Lk~L~L~~~~~l~---~l~~~~-~~L~~L~~~~~~~~~  355 (395)
                      ++.++... ...+..+++|++|+++++....  . ....+++|+.|+++++.-..   .....+ ++|+.|++++|++..
T Consensus       184 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          184 QCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            99876422 3356778999999999875322  1 22346899999998764222   223445 489999999998753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.33  E-value=3.9e-12  Score=123.78  Aligned_cols=218  Identities=14%  Similarity=0.057  Sum_probs=148.3

Q ss_pred             CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCc--cCCCCCcEEEeeeeecCh---HHHHHH----
Q 016087          137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATD---LVLQSL----  203 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~--~~~~~Lk~L~L~~~~~~~---~~l~~l----  203 (395)
                      .++++|++..+.... ..+.  .+..+++|++|+|++|.+.  .+..  ..+++|++|+++++.+..   ..+..+    
T Consensus       103 ~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  181 (455)
T 3v47_A          103 ANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH  181 (455)
T ss_dssp             TTCCEEECTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred             ccCCEEeCCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence            688998886543321 1222  2667899999999999876  2432  379999999999998732   111111    


Q ss_pred             --------------------------HcCCCCccEEeeecCCCC----------------ceEeeC--------------
Q 016087          204 --------------------------LIGCPLIEYLSLQLCPGL----------------KNLELS--------------  227 (395)
Q Consensus       204 --------------------------~~~~p~Le~L~l~~c~~~----------------~~~~i~--------------  227 (395)
                                                +..++.|++|++++|...                +.+.+.              
T Consensus       182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  261 (455)
T 3v47_A          182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF  261 (455)
T ss_dssp             EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred             ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence                                      123467888888877431                111111              


Q ss_pred             -----------CCCCcceEEecccc--c-cchhhccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHH
Q 016087          228 -----------GLTKLNKFEVCDAE--E-LQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       228 -----------~~~~L~~L~i~~c~--~-l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                                 ..++|+.|+++++.  . .......+++|++|+++++..... +..+..+++|++|++++|.+... ..
T Consensus       262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~  340 (455)
T 3v47_A          262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DS  340 (455)
T ss_dssp             CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CG
T ss_pred             ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-Ch
Confidence                       12578899998885  1 122233678999999999874433 33577899999999999987542 23


Q ss_pred             HHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeecc
Q 016087          293 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      ..+..+++|++|+++++..-..   ....+++|++|+|+++.  .++ .....+++|+.|++++|++...
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            4568899999999999853322   22356999999998753  222 3346789999999999987544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=4e-12  Score=128.18  Aligned_cols=101  Identities=13%  Similarity=0.086  Sum_probs=53.8

Q ss_pred             ceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEeccc
Q 016087          252 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYD  329 (395)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~  329 (395)
                      +|+.|+++++..... ..++.+++|+.|+|++|.+... ....+..+++|+.|+|+++.--  ......+++|+.|+|++
T Consensus       233 ~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          233 ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence            444455544432221 2345566777777777665532 1234456677777777765311  11122356777777765


Q ss_pred             CC--CchhhhhhCCCcceeEEeeeeee
Q 016087          330 CL--RLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       330 ~~--~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                      +.  .++.-...+++|+.|++++|.+.
T Consensus       311 N~l~~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          311 NHLLHVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             SCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCCCccCcccccCCCCCEEECCCCCCC
Confidence            43  22222345667777777776653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.32  E-value=2.8e-12  Score=124.97  Aligned_cols=84  Identities=20%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             hCCCcEEEEEecCCCcc---cccccccCCCCccEEEEcceeccC--CC--ccCCC----CCcEEEeeeeecCh---HHHH
Q 016087          136 GCNVKELSLELLGNPRF---NLPEIILCSNSIEILTLAGLKLES--PR--SVKLS----SLTKLFLMRVDATD---LVLQ  201 (395)
Q Consensus       136 ~~~l~~L~l~~~~~~~~---~l~~~l~~~~~L~~L~L~~~~~~~--~~--~~~~~----~Lk~L~L~~~~~~~---~~l~  201 (395)
                      .++++.+++..+.....   .++..+..+++|++|+|+++.+..  ..  ...++    +|++|+|++|.+++   ..+.
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            35677777765443221   444555566677777777665431  00  01222    57777777666643   2344


Q ss_pred             HHHcCCCCccEEeeecCC
Q 016087          202 SLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       202 ~l~~~~p~Le~L~l~~c~  219 (395)
                      ..+..+++|++|++++|.
T Consensus       107 ~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHTTSCTTCCEEECCSSB
T ss_pred             HHHccCCceeEEECCCCc
Confidence            455666677777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.31  E-value=1.6e-11  Score=117.11  Aligned_cols=210  Identities=14%  Similarity=0.005  Sum_probs=144.0

Q ss_pred             CCCcEEEEEecCCCcccccccc-cCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +++++|++....  ...+|..+ ..+++|++|+++++.+.  .+. ...+++|++|+++++.++...    +..++.|+.
T Consensus       117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~  190 (390)
T 3o6n_A          117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  190 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence            577888776533  34666654 46888889988888765  222 236788888888888874321    344666666


Q ss_pred             EeeecCCCC------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCccc-ccccc
Q 016087          213 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-KFNLA  271 (395)
Q Consensus       213 L~l~~c~~~------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~  271 (395)
                      |++.++...                  ..+.....++|+.|+++++.  .. ......++|++|+++++..... +..+.
T Consensus       191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            666554221                  11222334689999999986  22 2223789999999999874432 44577


Q ss_pred             cccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---cCCCccCEEecccCCCchhhhhhCCCcceeEE
Q 016087          272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVKIAASSLSIFKY  348 (395)
Q Consensus       272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~  348 (395)
                      .+++|++|+++++.++.-  ......+++|+.|+++++. +..+.   ..+++|+.|+++++.-..--...+++|+.|++
T Consensus       270 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l  346 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL  346 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred             ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeCchhhccCCEEEc
Confidence            899999999999987642  2234678999999999985 33332   34689999999876422212467899999999


Q ss_pred             eeeeeecc
Q 016087          349 SGDVISFQ  356 (395)
Q Consensus       349 ~~~~~~~~  356 (395)
                      ++|++...
T Consensus       347 ~~N~~~~~  354 (390)
T 3o6n_A          347 SHNDWDCN  354 (390)
T ss_dssp             CSSCEEHH
T ss_pred             CCCCccch
Confidence            99987543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.30  E-value=2.2e-11  Score=113.40  Aligned_cols=170  Identities=16%  Similarity=0.215  Sum_probs=75.1

Q ss_pred             cccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc----eEeeCCC
Q 016087          155 PEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK----NLELSGL  229 (395)
Q Consensus       155 ~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~----~~~i~~~  229 (395)
                      |..+..+++|++|+++++.+. .+.. .+++|++|+++++.+..-. ...+..+++|+.|++.+|....    ...+..+
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            334445555556655555443 2211 2255566665555552111 1224455556666665553310    1112334


Q ss_pred             CCcceEEeccccccchhhc-cCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087          230 TKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  307 (395)
Q Consensus       230 ~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  307 (395)
                      ++|+.|+++++. +..+.. ..++|++|+++++..... +..+..+++|+.|+++++.++... ...+..+++|+.|+++
T Consensus       171 ~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          171 KKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLN  248 (330)
T ss_dssp             TTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECC
T ss_pred             CCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECC
Confidence            555555555553 111111 124555555555542221 223444555555555555543211 1123445555555555


Q ss_pred             CCCCCchh---ccCCCccCEEeccc
Q 016087          308 GCDDLKSI---NISSRSLKLLEIYD  329 (395)
Q Consensus       308 ~~~~l~~~---~~~~~~Lk~L~L~~  329 (395)
                      ++. +..+   ...+++|++|++++
T Consensus       249 ~N~-l~~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          249 NNK-LVKVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             SSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred             CCc-CccCChhhccCCCcCEEECCC
Confidence            542 1111   12335555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=5.9e-12  Score=119.97  Aligned_cols=205  Identities=15%  Similarity=0.116  Sum_probs=145.9

Q ss_pred             cccccccccCCCCccEEEEcceeccC------C-CccCCCCCcEEEeeeeecC------hHH---HHHHHcCCCCccEEe
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLES------P-RSVKLSSLTKLFLMRVDAT------DLV---LQSLLIGCPLIEYLS  214 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~~------~-~~~~~~~Lk~L~L~~~~~~------~~~---l~~l~~~~p~Le~L~  214 (395)
                      ...++..+..+++|++|+|++|.+..      + ....+++|++|+|++|.++      ...   +...+..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34566667779999999999998761      1 1226999999999998542      122   334457899999999


Q ss_pred             eecCCCCc----eE--eeCCCCCcceEEeccccc----cchhh---ccC---------CceeEEEEeCCCCc--ccc---
Q 016087          215 LQLCPGLK----NL--ELSGLTKLNKFEVCDAEE----LQRLC---IIA---------QDVQEVSIQGPLPF--QCK---  267 (395)
Q Consensus       215 l~~c~~~~----~~--~i~~~~~L~~L~i~~c~~----l~~l~---~~~---------p~L~~L~l~~~~~~--~~~---  267 (395)
                      +++|....    .+  .+..+++|++|++++|.-    ...+.   ...         ++|++|.++++...  .++   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99986432    11  234578999999999961    11111   122         89999999998742  223   


Q ss_pred             cccccccccceeEecccccchHHHHH----HhccCCCccEEEeeCCCCC----chh---ccCCCccCEEecccCCCch--
Q 016087          268 FNLASCKFLKYLRFALTHIKDEWLCN----QISKFPLLESLLIAGCDDL----KSI---NISSRSLKLLEIYDCLRLV--  334 (395)
Q Consensus       268 ~~~~~~~~L~~L~L~~~~~~~~~~~~----l~~~~~~L~~L~L~~~~~l----~~~---~~~~~~Lk~L~L~~~~~l~--  334 (395)
                      ..+..+++|++|++++|.+++..+..    .+..+++|+.|+|+++..-    ..+   ...+++|++|+|++|.--.  
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            24567899999999999998765333    5568999999999998731    222   3456899999999775221  


Q ss_pred             --hhhh-----hCCCcceeEEeeeeeec
Q 016087          335 --EVKI-----AASSLSIFKYSGDVISF  355 (395)
Q Consensus       335 --~l~~-----~~~~L~~L~~~~~~~~~  355 (395)
                        .++.     .+++|++|++++|.++.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence              1222     28999999999998866

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=5.4e-12  Score=123.98  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=139.6

Q ss_pred             CCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087          161 SNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  237 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i  237 (395)
                      +++|+.|+|+++.+. . +.. ..+++|++|+|++|.++...-   +..+++|+.|++++|.. ..  +...++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~--l~~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-QE--LLVGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEE-EE--EEECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcC-CC--CCCCCCcCEEEC
Confidence            458999999999876 2 223 389999999999999832111   77899999999999842 22  223479999999


Q ss_pred             ccccccchh-hccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh
Q 016087          238 CDAEELQRL-CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI  315 (395)
Q Consensus       238 ~~c~~l~~l-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~  315 (395)
                      ++|. +..+ ....++|++|+++++.... .+..++.+++|+.|+|++|.++......+...+++|+.|+|+++. +..+
T Consensus       107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~  184 (487)
T 3oja_A          107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (487)
T ss_dssp             CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence            9986 2222 2256899999999987443 344677899999999999998765545555678999999999986 3222


Q ss_pred             c--cCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087          316 N--ISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       316 ~--~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      .  ..+++|+.|+|+++.  .++.-...+++|+.|++++|.++.
T Consensus       185 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence            2  236899999998653  333334678999999999998763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=1.2e-11  Score=128.83  Aligned_cols=171  Identities=11%  Similarity=0.015  Sum_probs=116.4

Q ss_pred             CCCcEEEEEecCCCcc----------------ccccccc--CCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeee-
Q 016087          137 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD-  194 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~-  194 (395)
                      ++++.|+|........                .+|..+.  .+++|++|+|++|.+.  .|... .+++|++|+|++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            6899999976443221                2888877  8999999999998754  44333 89999999999998 


Q ss_pred             cChH----HHHHH---HcCCCCccEEeeecCCCCceE---eeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCC
Q 016087          195 ATDL----VLQSL---LIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPL  262 (395)
Q Consensus       195 ~~~~----~l~~l---~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~  262 (395)
                      ++..    .+..+   +..+|+|+.|++++|....-.   .+..+++|+.|+++++.  .++ ....+++|+.|+++++.
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc
Confidence            6552    22222   245679999999998654211   24577899999999885  233 11256788888888877


Q ss_pred             Ccccccccccccc-cceeEecccccchHHHHHHhccCC--CccEEEeeCCC
Q 016087          263 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKFP--LLESLLIAGCD  310 (395)
Q Consensus       263 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~  310 (395)
                      ...++..+..+++ |+.|+|++|.++  .+...+...+  +|+.|+++++.
T Consensus       607 l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          607 IEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             cccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCc
Confidence            5455555677777 888888887765  2222333332  36666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.29  E-value=1.5e-11  Score=124.04  Aligned_cols=178  Identities=21%  Similarity=0.218  Sum_probs=126.8

Q ss_pred             cccccc-ccCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE---e
Q 016087          152 FNLPEI-ILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---E  225 (395)
Q Consensus       152 ~~l~~~-l~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~  225 (395)
                      ..++.. +..+++|+.|+++++.+. .|.. ..+++|++|+++++.+.... ...+..++.|+.|++.+|.....+   .
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhh
Confidence            344443 556899999999998876 4433 37899999999999984321 123677999999999998644222   2


Q ss_pred             eCCCCCcceEEecccc--ccc---hhhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCC
Q 016087          226 LSGLTKLNKFEVCDAE--ELQ---RLCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFP  299 (395)
Q Consensus       226 i~~~~~L~~L~i~~c~--~l~---~l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  299 (395)
                      +..+++|+.|+++++.  ...   .....+++|++|+++++.... .+..+..+++|++|+++++.+........+..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            4567899999999986  221   122367999999999987433 2345778899999999999876543344567899


Q ss_pred             CccEEEeeCCCCCch---hccCCCccCEEecccC
Q 016087          300 LLESLLIAGCDDLKS---INISSRSLKLLEIYDC  330 (395)
Q Consensus       300 ~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~  330 (395)
                      +|+.|+++++.....   ....+++|++|+++++
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  459 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN  459 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence            999999999753221   1234567777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=2.1e-11  Score=122.90  Aligned_cols=210  Identities=14%  Similarity=0.004  Sum_probs=144.7

Q ss_pred             CCCcEEEEEecCCCcccccccc-cCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      ++++.|++....  ...+|..+ ..+++|++|+|++|.+.  .+. ...+++|++|++++|.+....    +..++.|+.
T Consensus       123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~  196 (597)
T 3oja_B          123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  196 (597)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence            578888886543  34666654 57889999999988775  232 237889999999988884321    445677777


Q ss_pred             EeeecCCCC------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcc-cccccc
Q 016087          213 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQ-CKFNLA  271 (395)
Q Consensus       213 L~l~~c~~~------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~-~~~~~~  271 (395)
                      |++.+|...                  ..+.....++|+.|++++|.  .. .....+++|+.|+++++.... .+..++
T Consensus       197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            777665321                  11111223578888888775  22 222368999999999987443 345678


Q ss_pred             cccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCCCchhhhhhCCCcceeEEe
Q 016087          272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYS  349 (395)
Q Consensus       272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~  349 (395)
                      .+++|+.|+|++|.++.  +......+|+|+.|+|+++...  ......+++|+.|+|+++.-...-...+++|+.|+++
T Consensus       276 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~  353 (597)
T 3oja_B          276 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS  353 (597)
T ss_dssp             TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred             CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEee
Confidence            89999999999998764  2333466899999999998532  2222346899999999765322224678999999999


Q ss_pred             eeeeec
Q 016087          350 GDVISF  355 (395)
Q Consensus       350 ~~~~~~  355 (395)
                      +|++..
T Consensus       354 ~N~~~~  359 (597)
T 3oja_B          354 HNDWDC  359 (597)
T ss_dssp             SSCEEH
T ss_pred             CCCCCC
Confidence            998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=1.9e-12  Score=126.20  Aligned_cols=216  Identities=20%  Similarity=0.222  Sum_probs=125.8

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceeccC------CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCC--
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES------PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCP--  208 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~------~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p--  208 (395)
                      .+++|++.........+...+..+++|++|++++|.+..      +.. ..+++|++|+|+++.+++..+..+...++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            466777765443333444445678999999999998651      122 26899999999999998777777777777  


Q ss_pred             --CccEEeeecCCCCc------eEeeCCCCCcceEEecccc----ccchhhc----cCCceeEEEEeCCCCcc-----cc
Q 016087          209 --LIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAE----ELQRLCI----IAQDVQEVSIQGPLPFQ-----CK  267 (395)
Q Consensus       209 --~Le~L~l~~c~~~~------~~~i~~~~~L~~L~i~~c~----~l~~l~~----~~p~L~~L~l~~~~~~~-----~~  267 (395)
                        +|++|++++|....      ...+..+++|++|++++|.    ....+..    ..++|++|+++++....     +.
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              79999999996431      1134567788888888875    1111111    13457777766654221     11


Q ss_pred             cccccccccceeEecccccchHHH--------------------------------HHHhccCCCccEEEeeCCCCCchh
Q 016087          268 FNLASCKFLKYLRFALTHIKDEWL--------------------------------CNQISKFPLLESLLIAGCDDLKSI  315 (395)
Q Consensus       268 ~~~~~~~~L~~L~L~~~~~~~~~~--------------------------------~~l~~~~~~L~~L~L~~~~~l~~~  315 (395)
                      ..+..+++|++|+++++.+.+...                                ...+..+++|++|+++++. +...
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~  242 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV  242 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence            122334555555555554443322                                2333445555555555543 2111


Q ss_pred             ---------ccCCCccCEEecccCCC-------chhhhhhCCCcceeEEeeeeee
Q 016087          316 ---------NISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       316 ---------~~~~~~Lk~L~L~~~~~-------l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                               ...+++|++|++++|.-       +......+++|++|++++|.+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence                     11245666666665521       1112234677777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.27  E-value=3.3e-12  Score=118.40  Aligned_cols=188  Identities=14%  Similarity=0.132  Sum_probs=139.8

Q ss_pred             CCCCccEEEEcceeccC-C-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087          160 CSNSIEILTLAGLKLES-P-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  236 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~~-~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~  236 (395)
                      .+++|++|+|+++.+.. + .. ..+++|++|+|++|.+....  . +..+++|++|++++|.. .  .+...++|+.|.
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~--~l~~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-Q--ELLVGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-E--EEEECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-c--cccCCCCcCEEE
Confidence            46789999999998762 2 22 37999999999999983211  1 67899999999999852 2  223347999999


Q ss_pred             eccccccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch
Q 016087          237 VCDAEELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS  314 (395)
Q Consensus       237 i~~c~~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~  314 (395)
                      ++++. +..+ ....++|++|+++++..... ...++.+++|++|+++++.++......+...+++|+.|+++++. ++.
T Consensus       106 l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~  183 (317)
T 3o53_A          106 AANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD  183 (317)
T ss_dssp             CCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred             CCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence            99985 2222 22578999999999874443 34577889999999999998765445555678999999999986 322


Q ss_pred             hc--cCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087          315 IN--ISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       315 ~~--~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      +.  ..+++|+.|+++++.  .++.-...+++|+.|++++|.+..
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence            22  236899999998653  333335678999999999998753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.27  E-value=3.8e-11  Score=110.79  Aligned_cols=164  Identities=21%  Similarity=0.149  Sum_probs=123.3

Q ss_pred             hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087          136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~  214 (395)
                      .++++.|++..+.  ...++. +..+++|++|++++|.+. .+....+++|++|++++|.+..-  .. +..+++|+.|+
T Consensus        62 l~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           62 LNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY  135 (308)
T ss_dssp             CTTCCEEECCSSC--CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred             cCCCCEEEccCCc--CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence            3789999986543  334554 778999999999999877 33344899999999999999432  12 78899999999


Q ss_pred             eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087          215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                      +++|.......+..+++|+.|++++|.  .+.. ...+++|+.|+++++....+.. +..+++|++|++++|.+.+..  
T Consensus       136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--  211 (308)
T 1h6u_A          136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--  211 (308)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--
T ss_pred             CCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--
Confidence            999965432235677899999999885  3333 2367899999998887443332 677889999999998876543  


Q ss_pred             HHhccCCCccEEEeeCCC
Q 016087          293 NQISKFPLLESLLIAGCD  310 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~  310 (395)
                       -+..+++|+.|++++++
T Consensus       212 -~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          212 -PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -GGTTCTTCCEEEEEEEE
T ss_pred             -cccCCCCCCEEEccCCe
Confidence             26788999999998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.27  E-value=2.6e-11  Score=112.84  Aligned_cols=212  Identities=13%  Similarity=0.038  Sum_probs=147.8

Q ss_pred             CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      ++++.+++....  ...++. .+..+++|++|+|++|.+.  .+... .+++|++|+++++.+..-  .  ....+.|++
T Consensus        52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccE
Confidence            477887775533  334444 5667999999999998876  23333 789999999999987421  0  122479999


Q ss_pred             EeeecCCCCceE--eeCCCCCcceEEeccccc----cch-hhccCCceeEEEEeCCCCcccccccccccccceeEecccc
Q 016087          213 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQR-LCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       213 L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~~----l~~-l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~  285 (395)
                      |++++|......  .+..+++|+.|+++++.-    ... ....+++|++|+++++....++..+  .++|++|+++++.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCc
Confidence            999998543211  246788999999998851    111 1236789999999988744333222  3899999999998


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecce
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQL  357 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~~  357 (395)
                      ++... ...+..+++|+.|+++++..-..   ....+++|++|+++++.  .++.....+++|+.|++++|+++...
T Consensus       204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence            76432 34567889999999998753221   23356899999998763  23333467899999999999875543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=124.11  Aligned_cols=196  Identities=14%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             ccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCC
Q 016087          154 LPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTK  231 (395)
Q Consensus       154 l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~  231 (395)
                      .|..+..+++|+.|+++++.+. .+... .+ +|++|++.++.+..  +.  ...++.|+.|++.+|..........+++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCC
Confidence            4455667899999999998876 33333 55 99999999998841  11  1356777777777765433222244556


Q ss_pred             cceEEecccc--cc---chhhccCCceeEEEEeCCCCccccc-------------------------ccccccccceeEe
Q 016087          232 LNKFEVCDAE--EL---QRLCIIAQDVQEVSIQGPLPFQCKF-------------------------NLASCKFLKYLRF  281 (395)
Q Consensus       232 L~~L~i~~c~--~l---~~l~~~~p~L~~L~l~~~~~~~~~~-------------------------~~~~~~~L~~L~L  281 (395)
                      |+.|++++|.  ..   ......+++|++|+++++.....+.                         .+..+++|++|++
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            6666666553  11   1112244555555555543222121                         2344555555555


Q ss_pred             cccccchHHHHHHhccCCCccEEEeeCCCCC----chhccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeee
Q 016087          282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~  354 (395)
                      +++.+... ....+..+++|+.|++++|...    ......+++|+.|+|+++.-..   .....+++|+.|++++|.+.
T Consensus       429 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          429 SHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             TTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            55543321 1223445566666666665421    1122345677777776653211   22356778888888877654


Q ss_pred             c
Q 016087          355 F  355 (395)
Q Consensus       355 ~  355 (395)
                      .
T Consensus       508 ~  508 (570)
T 2z63_A          508 S  508 (570)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.26  E-value=5.7e-11  Score=119.69  Aligned_cols=198  Identities=17%  Similarity=0.111  Sum_probs=116.6

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++.|++..+.  ...+|.   .+++|++|+|++|.+. .+.  .+++|++|++++|.++.     +-...++|+.|++
T Consensus        61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred             CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence            588888886543  335565   4688999999998876 333  78899999999988732     1115678888888


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchH------
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE------  289 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~------  289 (395)
                      .+|... .+.. .+++|++|++++|. +..+....++|+.|.++++....++   ..+++|+.|++++|.++.-      
T Consensus       129 ~~N~l~-~lp~-~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~  202 (622)
T 3g06_A          129 FGNQLT-SLPV-LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE  202 (622)
T ss_dssp             CSSCCS-CCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CCCCCC-cCCC-CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence            887532 1111 24678888888773 3333233445555555554422222   2234455555544443310      


Q ss_pred             ---------HHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeee
Q 016087          290 ---------WLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       290 ---------~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                               .+..+...+++|+.|+++++. ++.+...+++|+.|+|+++ .+..++..+++|+.|++++|.++
T Consensus       203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC
T ss_pred             hhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC
Confidence                     000122234566666666652 3334444567777777665 44455556777888888877664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=3e-11  Score=117.14  Aligned_cols=206  Identities=13%  Similarity=0.072  Sum_probs=145.3

Q ss_pred             EecCCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087          145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL  221 (395)
Q Consensus       145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~  221 (395)
                      .+.......+|..+.  ++++.|+|+++.+.  .+ ....+++|++|+|+++.+..-.. ..+.++++|++|++++|...
T Consensus        49 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             ECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCS
T ss_pred             EeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCC
Confidence            334444566776553  68999999998876  22 33489999999999998832211 23677999999999998543


Q ss_pred             ce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCC-cccc-cccccccccceeEecccccchHHHHHH
Q 016087          222 KN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQ  294 (395)
Q Consensus       222 ~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l  294 (395)
                      .-  ..+..+++|+.|+++++.  .+... ...+++|++|+++++.. ..+. ..+..+++|++|++++|.++.-   ..
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~  202 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PN  202 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CC
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cc
Confidence            21  124567899999999885  22222 22679999999998542 2222 2467899999999999987632   23


Q ss_pred             hccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCC--ch-hhhhhCCCcceeEEeeeeeecc
Q 016087          295 ISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLR--LV-EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~--l~-~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      +..+++|+.|+|+++..-..   ....+++|+.|+|+++.-  +. ....++++|+.|++++|.++..
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            57789999999999852221   233568999999986532  11 3346789999999999987543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=2.3e-11  Score=110.30  Aligned_cols=203  Identities=15%  Similarity=0.102  Sum_probs=132.1

Q ss_pred             CCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087          148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  224 (395)
Q Consensus       148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~  224 (395)
                      ......+|..+.  ++|++|+++++.+.  .+ ....+++|++|+++++.+..-. ...+..+++|++|++++|......
T Consensus        16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccC
Confidence            333455665442  57899999888765  22 2337889999999988773211 123567889999999888543211


Q ss_pred             --eeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcc--cccccccccccceeEecccccchHHHHHHhcc
Q 016087          225 --ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDEWLCNQISK  297 (395)
Q Consensus       225 --~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  297 (395)
                        .+..+++|+.|++.++.  .+.... ..+++|++|+++++....  ++..++.+++|++|++++|.++.-. ...+..
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~  171 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRV  171 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHH
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhh
Confidence              24567889999998875  222222 267899999999887443  4556788899999999998866421 112233


Q ss_pred             CCCcc----EEEeeCCCCCc--hhccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          298 FPLLE----SLLIAGCDDLK--SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       298 ~~~L~----~L~L~~~~~l~--~~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                      +++|+    .|+++++..-.  .......+|+.|+++++.  .++ .....+++|+.|++++|++.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            34444    78888765221  112233589999998654  222 33467899999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.25  E-value=3.2e-11  Score=117.34  Aligned_cols=205  Identities=16%  Similarity=0.063  Sum_probs=145.3

Q ss_pred             EecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087          145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL  221 (395)
Q Consensus       145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~  221 (395)
                      .+.+.+...+|..+.  ++|++|+|+++.+.  .+.. ..+++|++|+|+++.+..-. ...+.++++|++|++++|...
T Consensus        60 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCC
Confidence            333444556665543  68999999998876  3333 38999999999999884321 123567999999999998643


Q ss_pred             ce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCC-cccc-cccccccccceeEecccccchHHHHHH
Q 016087          222 KN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQ  294 (395)
Q Consensus       222 ~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l  294 (395)
                      ..  ..+..+++|+.|+++++.  .+..- ....++|++|+++++.. ..+. ..+..+++|++|++++|.++.-   ..
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~  213 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PN  213 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CC
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---cc
Confidence            11  124567899999999985  22221 22679999999998542 2222 2467889999999999987642   23


Q ss_pred             hccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeec
Q 016087          295 ISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      +..+++|+.|+++++..-..   ....+++|+.|+|+++.--.   ....++++|+.|++++|.++.
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            67789999999999763322   23456899999998764211   334678999999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=8.3e-12  Score=113.07  Aligned_cols=169  Identities=13%  Similarity=0.020  Sum_probs=72.1

Q ss_pred             ccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcce
Q 016087          158 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNK  234 (395)
Q Consensus       158 l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~  234 (395)
                      +..+++|++|++++|.+. .+....+++|++|++++|.+..- ....+..+++|++|++.+|......  .+.       
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------  130 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFD-------  130 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTT-------
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhc-------
Confidence            444555566665555544 22122455555555555554210 0111334455555555554321100  012       


Q ss_pred             EEeccccccchhhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc
Q 016087          235 FEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK  313 (395)
Q Consensus       235 L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~  313 (395)
                                    .+++|++|+++++....++. .++.+++|+.|++++|.++.- ....+..+++|+.|+++++.--.
T Consensus       131 --------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          131 --------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             --------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCc
Confidence                          33445555554443222111 134455555555555554421 12223445555555555543111


Q ss_pred             h---hccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeee
Q 016087          314 S---INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       314 ~---~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      .   ....+++|+.|+++++.    +.+.||+|+.|++.++.+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH  234 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred             cCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence            1   11234555555555432    123355555555544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=119.68  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=39.0

Q ss_pred             cCCceeEEEEeCCCCcc-cccccccccccceeEecccccchH-HHHHHhccCCCccEEEeeCCC
Q 016087          249 IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      .+++|++|+++++.... .+..++.+++|+.|++++|.++.- .+...+..+++|+.|+++++.
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            55677777777765322 334456677777777777776641 233445667777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.23  E-value=1.3e-11  Score=122.96  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc---CCC-ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCc
Q 016087          137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE---SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLI  210 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~---~~~-~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~L  210 (395)
                      +++++|++....  ...++.. +..+++|++|++++|.+.   .+. ...+++|++|+++++.. +.- ....+..+++|
T Consensus        74 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L  150 (549)
T 2z81_A           74 GSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL  150 (549)
T ss_dssp             TTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred             ccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence            467777764432  2333433 566777888888877664   122 23677888888887763 211 11124567788


Q ss_pred             cEEeeecCCCCce--EeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC
Q 016087          211 EYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL  262 (395)
Q Consensus       211 e~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~  262 (395)
                      ++|++.+|.....  ..+..+++|++|++..+.  .+.... -..++|++|+++++.
T Consensus       151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            8888877753321  123456677788777664  222221 146788888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.23  E-value=2.9e-11  Score=110.11  Aligned_cols=190  Identities=15%  Similarity=0.086  Sum_probs=129.4

Q ss_pred             CCCcEEEEEecCCCccccc-ccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeee-cChHHHHHHHcCCCCcc
Q 016087          137 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~-~~~~~l~~l~~~~p~Le  211 (395)
                      ++++++++....  ...++ ..+..+++|++|+++++.+.  .+.. ..+++|++|+++++. +..-. ...+..+++|+
T Consensus        32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            477777775433  23344 34567889999999988765  2333 378999999999986 42211 12356789999


Q ss_pred             EEeeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCccccc-ccccccccceeEecccc
Q 016087          212 YLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH  285 (395)
Q Consensus       212 ~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~  285 (395)
                      +|++.+|.....  ..+..+++|+.|+++++.  .+..- ...+++|++|+++++....++. .+..+++|++|+++++.
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            999998854321  124567899999999885  22221 2257899999999887444333 36778999999999988


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecccC
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDC  330 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~~  330 (395)
                      ++... ...+..+++|+.|+++++.--.   .....+++|+.|+++++
T Consensus       189 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          189 VAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            76432 3456778999999999874222   12345789999999854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=2.9e-11  Score=126.00  Aligned_cols=210  Identities=11%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCC-ccE
Q 016087          137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~-Le~  212 (395)
                      ++++.|++.....  ..+|.  .+..+++|+.|+|++|.+. .|....+++|+.|+|++|.+.  .+...+..++. |+.
T Consensus       548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            4788888765443  27777  7778888888888887765 443336778888888888774  22223556677 788


Q ss_pred             EeeecCCCCceEe--eCC-------------------------------CCCcceEEecccc--ccchhhc-cCCceeEE
Q 016087          213 LSLQLCPGLKNLE--LSG-------------------------------LTKLNKFEVCDAE--ELQRLCI-IAQDVQEV  256 (395)
Q Consensus       213 L~l~~c~~~~~~~--i~~-------------------------------~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L  256 (395)
                      |++++|... .+.  +..                               .++|+.|++++|.  .++.... .+++|+.|
T Consensus       624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            877776432 110  001                               1244455555443  1111111 34666666


Q ss_pred             EEeCCCCcccccc--------cccccccceeEecccccchHHHHHHhc--cCCCccEEEeeCCCC--CchhccCCCccCE
Q 016087          257 SIQGPLPFQCKFN--------LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDD--LKSINISSRSLKL  324 (395)
Q Consensus       257 ~l~~~~~~~~~~~--------~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~--l~~~~~~~~~Lk~  324 (395)
                      +++++....++..        .+++++|+.|+|++|.++  .+...+.  .+++|+.|+|+++.-  +......+++|+.
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~  780 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA  780 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCE
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCE
Confidence            6666542222221        112347888888777766  2233333  678888888887642  2222235678888


Q ss_pred             EecccCC---------CchhhhhhCCCcceeEEeeeee
Q 016087          325 LEIYDCL---------RLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       325 L~L~~~~---------~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      |+|+++.         .++.....+++|+.|++++|.+
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            8886522         1223345688888888888876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=1.9e-10  Score=115.78  Aligned_cols=196  Identities=21%  Similarity=0.155  Sum_probs=126.0

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++.|+++...  ...+|.   ..++|++|+|++|.+. .+.  .+++|++|++++|.++.     +-...++|+.|++
T Consensus        81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC
T ss_pred             CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEEC
Confidence            578888876533  234554   4677888888877665 222  56677777777776522     1123466777777


Q ss_pred             ecCCCCc-------------------eEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccccccccccccc
Q 016087          216 QLCPGLK-------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFL  276 (395)
Q Consensus       216 ~~c~~~~-------------------~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L  276 (395)
                      ++|....                   .+. ..+++|+.|++++|. +..+....++|+.|.++++....++   ..+++|
T Consensus       149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L  223 (622)
T 3g06_A          149 SDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLP---ALPSGL  223 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred             cCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence            6663221                   001 123566666666653 3333334566777777666533222   234889


Q ss_pred             ceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeee
Q 016087          277 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       277 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                      +.|++++|.++.     +...+++|+.|+++++. ++.+...+++|+.|+|+++.  .++....++++|+.|++++|+++
T Consensus       224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          224 KELIVSGNRLTS-----LPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CEEEccCCccCc-----CCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence            999999998764     23677999999999974 55555577899999998763  33333567999999999999875


Q ss_pred             c
Q 016087          355 F  355 (395)
Q Consensus       355 ~  355 (395)
                      .
T Consensus       298 ~  298 (622)
T 3g06_A          298 E  298 (622)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.21  E-value=2.5e-10  Score=113.62  Aligned_cols=215  Identities=16%  Similarity=0.140  Sum_probs=147.9

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      ++++++++...... ...|..+..+++|++|++++|.+.  .+.. ..+++|++|+++++.+.... ...+..+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence            47888888654321 222456778999999999998876  3333 38999999999999984322 2346789999999


Q ss_pred             eeecCCCCc---eEeeCCCCCcceEEeccccccchh----hccCCceeEEEEeCCCCcc-cccccccccccceeEecccc
Q 016087          214 SLQLCPGLK---NLELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       214 ~l~~c~~~~---~~~i~~~~~L~~L~i~~c~~l~~l----~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~  285 (395)
                      ++++|....   ...+..+++|+.|+++++..+..+    ...+++|+.|+++++.... .+..++.+++|++|++..+.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999986432   123567889999999988633322    2367899999999877432 34557788999999999887


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCc------hhccCCCccCEEecccCCC-------chhhhhhCCCcceeEEeeee
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGDV  352 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~------~~~~~~~~Lk~L~L~~~~~-------l~~l~~~~~~L~~L~~~~~~  352 (395)
                      +..- ...++..+++|+.|+++++.--.      .+...+++|+.|++.++.-       +......+++|+.+++.++.
T Consensus       184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            6432 23344668999999999875322      1223457888888875431       11223456777888777776


Q ss_pred             ee
Q 016087          353 IS  354 (395)
Q Consensus       353 ~~  354 (395)
                      +.
T Consensus       263 ~~  264 (549)
T 2z81_A          263 LN  264 (549)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=114.06  Aligned_cols=148  Identities=11%  Similarity=0.040  Sum_probs=76.0

Q ss_pred             CCCCccEEeeecCCCCce--EeeCCCCCcceEEeccccccc-----hhh--ccCCceeEEEEeCCCCccccc----cccc
Q 016087          206 GCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQ-----RLC--IIAQDVQEVSIQGPLPFQCKF----NLAS  272 (395)
Q Consensus       206 ~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~l~-----~l~--~~~p~L~~L~l~~~~~~~~~~----~~~~  272 (395)
                      .+++|++|++++|.....  ..+..+++|+.|+++++.-..     ...  ...|+|++|+++++....+..    .++.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            455555555555533211  122344556666665553111     001  245566666666655322111    1345


Q ss_pred             ccccceeEecccccchHHHHHHhccC---CCccEEEeeCCCCCchhccC-CCccCEEecccCCCch-hhhhhCCCcceeE
Q 016087          273 CKFLKYLRFALTHIKDEWLCNQISKF---PLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLV-EVKIAASSLSIFK  347 (395)
Q Consensus       273 ~~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~L~~~~~l~~~~~~-~~~Lk~L~L~~~~~l~-~l~~~~~~L~~L~  347 (395)
                      +++|++|+|++|.+++.... .+..+   ++|++|+++++. ++.+... .++|+.|+|+++.--. ..+..+++|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            57777777777765542111 12222   577777777654 2222221 3677888877543111 2346678888888


Q ss_pred             Eeeeeeec
Q 016087          348 YSGDVISF  355 (395)
Q Consensus       348 ~~~~~~~~  355 (395)
                      +++|+++.
T Consensus       301 L~~N~l~~  308 (310)
T 4glp_A          301 LDGNPFLV  308 (310)
T ss_dssp             CSSTTTSC
T ss_pred             CcCCCCCC
Confidence            88887653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.21  E-value=2.4e-11  Score=114.26  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=142.1

Q ss_pred             CCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087          148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  224 (395)
Q Consensus       148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~  224 (395)
                      ......+|..+.  ++|++|+++++.+.  .+ ....+++|++|+++++.+..-. ...+..+++|++|++++|....-.
T Consensus        40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC
Confidence            344556676543  58999999998876  23 2348999999999999884311 123577899999999998643211


Q ss_pred             --eeCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCC-Cccc-ccccccccccceeEecccccchHHHHHHhc
Q 016087          225 --ELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPL-PFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQIS  296 (395)
Q Consensus       225 --~i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  296 (395)
                        .+..+++|++|+++++.  .+..  .....++|++|+++++. ...+ +..++.+++|++|+++++.+... ....+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~  195 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLK  195 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTT
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHh
Confidence              25678899999999985  3333  22368999999999874 3222 34577889999999999987643 234567


Q ss_pred             cCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCC----------------------------------chhhhh
Q 016087          297 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLR----------------------------------LVEVKI  338 (395)
Q Consensus       297 ~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~----------------------------------l~~l~~  338 (395)
                      .+++|++|+++++.. ..+.    ..+++|+.|+++++.-                                  +++...
T Consensus       196 ~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          196 SIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             TCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             ccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence            789999999999763 3222    2367888888875431                                  111234


Q ss_pred             hCCCcceeEEeeeeee
Q 016087          339 AASSLSIFKYSGDVIS  354 (395)
Q Consensus       339 ~~~~L~~L~~~~~~~~  354 (395)
                      .+++|+.|++++|.++
T Consensus       275 ~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          275 QISGLLELEFSRNQLK  290 (353)
T ss_dssp             TCTTCCEEECCSSCCC
T ss_pred             cccCCCEEECCCCCCC
Confidence            6889999999998775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.21  E-value=9.9e-11  Score=115.86  Aligned_cols=236  Identities=13%  Similarity=0.016  Sum_probs=140.2

Q ss_pred             ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccc-----cCCCCccEEEEcceeccCCCcc
Q 016087          106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII-----LCSNSIEILTLAGLKLESPRSV  180 (395)
Q Consensus       106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l-----~~~~~L~~L~L~~~~~~~~~~~  180 (395)
                      ..++.+.+....    .....+..+.......+++++++..+.. ...+|..+     ..+++|+.++++++.+..|...
T Consensus       220 ~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~  294 (520)
T 2z7x_B          220 PKLSNLTLNNIE----TTWNSFIRILQLVWHTTVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY  294 (520)
T ss_dssp             TTCCEEEEEEEE----EEHHHHHHHHHHHHTSSCSEEEEEEEEE-ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHH
T ss_pred             cchhhccccccc----cCHHHHHHHHHHhhhCcccEEEeecccc-cCccccchhhcccccCceeEeccccccceecchhh
Confidence            356666655321    1112333333333345788888765321 12455555     5677777777777666433111


Q ss_pred             -----CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc--eEeeCCCCCcceEEecccc--ccchh---hc
Q 016087          181 -----KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NLELSGLTKLNKFEVCDAE--ELQRL---CI  248 (395)
Q Consensus       181 -----~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~--~l~~l---~~  248 (395)
                           .-++|+.|+++++.+.....   ...++.|++|++++|....  ...+..+++|+.|++++|.  .+..+   ..
T Consensus       295 ~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  371 (520)
T 2z7x_B          295 IYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT  371 (520)
T ss_dssp             HHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred             hhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence                 12568888888877632111   1567888888888875432  1234567788888888775  22222   23


Q ss_pred             cCCceeEEEEeCCCCcc-ccc-ccccccccceeEecccccchHHHHHHhccC-CCccEEEeeCCCC--CchhccCCCccC
Q 016087          249 IAQDVQEVSIQGPLPFQ-CKF-NLASCKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDD--LKSINISSRSLK  323 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~--l~~~~~~~~~Lk  323 (395)
                      ..++|++|+++++.... ++. .+..+++|+.|++++|.+++..    ...+ ++|+.|+++++.-  +......+++|+
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~  447 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQ  447 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccccchhhhcCCCCC
Confidence            67888888888876433 333 2566788888888888776432    2233 6888888888742  222122567888


Q ss_pred             EEecccCCCchhh----hhhCCCcceeEEeeeeee
Q 016087          324 LLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       324 ~L~L~~~~~l~~l----~~~~~~L~~L~~~~~~~~  354 (395)
                      +|+++++. +..+    ...+++|+.|++++|++.
T Consensus       448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          448 ELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence            88887653 2222    345788888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.21  E-value=1.6e-11  Score=114.38  Aligned_cols=168  Identities=15%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             cccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc----eEeeCCCCC
Q 016087          157 IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK----NLELSGLTK  231 (395)
Q Consensus       157 ~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~----~~~i~~~~~  231 (395)
                      .+..+++|++|+++++.+. .+... +++|++|+++++.+..- ....+..+++|+.|++.+|....    ...+..+ +
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             HhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            3444555555555555443 22111 25555555555554210 01123445555555555553210    0011222 4


Q ss_pred             cceEEeccccccchhhc-cCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          232 LNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       232 L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      |+.|+++++. +..+.. ..++|++|+++++...... ..+..+++|++|+++++.+.... ...+..+++|+.|+++++
T Consensus       174 L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          174 LNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             CSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS
T ss_pred             cCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC
Confidence            5555555443 111111 1245555555554422221 23444555555555555543211 112344555555555554


Q ss_pred             CC--CchhccCCCccCEEeccc
Q 016087          310 DD--LKSINISSRSLKLLEIYD  329 (395)
Q Consensus       310 ~~--l~~~~~~~~~Lk~L~L~~  329 (395)
                      .-  +......+++|+.|++++
T Consensus       252 ~l~~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          252 KLSRVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CCCBCCTTGGGCTTCCEEECCS
T ss_pred             cCeecChhhhcCccCCEEECCC
Confidence            21  111122345555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.20  E-value=1.2e-10  Score=106.48  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecc
Q 016087          161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD  239 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~  239 (395)
                      +++|+.|++++|.+. .+....+++|++|+++++.+.+-.  . +..+++|+.|++++|....-..+..+++|+.|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence            344555555555443 222224555555555555552211  1 445555555555555322111223334444444444


Q ss_pred             cc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          240 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       240 c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      |.  .+.. ...+++|+.|+++++....+ ..++.+++|++|++++|.+++-.  . +..+++|+.|+++++
T Consensus       122 n~i~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          122 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred             CcCCCChh-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC
Confidence            42  1111 11334444444444432222 12334455555555554443321  1 344444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.20  E-value=8.2e-11  Score=107.57  Aligned_cols=191  Identities=15%  Similarity=0.030  Sum_probs=109.7

Q ss_pred             cCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087          159 LCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  237 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i  237 (395)
                      ..+++++.++++++.+. .|... .++|+.|+|+++.+..-. ...+..+++|+.|+++++..........+++|+.|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            34556666666665554 22222 356777777776662211 1124556777777777664332222245667777777


Q ss_pred             cccc--ccchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch
Q 016087          238 CDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS  314 (395)
Q Consensus       238 ~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~  314 (395)
                      +++.  .+.......++|++|+++++....++ ..+..+++|++|+|++|.++. .....+..+++|+.|+++++. ++.
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~  162 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN-LTE  162 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSC-CSC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCc-CCc
Confidence            7664  22222235677777777776643333 335667788888887777653 122345567778888887764 222


Q ss_pred             h----ccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeee
Q 016087          315 I----NISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       315 ~----~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      +    ...+++|+.|+|+++.  .++.-....++|+.|.+++|+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            2    2235778888876542  2222234456788888887775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.16  E-value=4.1e-11  Score=121.68  Aligned_cols=211  Identities=13%  Similarity=0.102  Sum_probs=117.3

Q ss_pred             CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCC-cc
Q 016087          137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IE  211 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~-Le  211 (395)
                      +++++|++.....  ..+|.  .+..+++|++|++++|.+.  .+....+++|++|+++++.+.  .+...+..++. |+
T Consensus       305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence            6788888865443  26777  6777888888888877654  332225666677776666653  11122445555 66


Q ss_pred             EEeeecCCCCce---------------------------EeeC-------CCCCcceEEecccc--ccchhhc-cCCcee
Q 016087          212 YLSLQLCPGLKN---------------------------LELS-------GLTKLNKFEVCDAE--ELQRLCI-IAQDVQ  254 (395)
Q Consensus       212 ~L~l~~c~~~~~---------------------------~~i~-------~~~~L~~L~i~~c~--~l~~l~~-~~p~L~  254 (395)
                      .|++++|....-                           ..+.       .+++|+.|+++++.  .+..-.. .+++|+
T Consensus       381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            666665532200                           0011       22355555555553  1111111 256666


Q ss_pred             EEEEeCCCCccccccc--------ccccccceeEecccccchHHHHHHhc--cCCCccEEEeeCCCCC--chhccCCCcc
Q 016087          255 EVSIQGPLPFQCKFNL--------ASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDDL--KSINISSRSL  322 (395)
Q Consensus       255 ~L~l~~~~~~~~~~~~--------~~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~l--~~~~~~~~~L  322 (395)
                      +|+++++....++...        ..+++|+.|+|++|.++  .+...+.  .+++|+.|+++++.--  ......+++|
T Consensus       461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L  538 (636)
T 4eco_A          461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL  538 (636)
T ss_dssp             EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSC
T ss_pred             EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCC
Confidence            6666665532222211        11237888888777766  2233333  7788888888876422  2222346788


Q ss_pred             CEEecccCC---------CchhhhhhCCCcceeEEeeeee
Q 016087          323 KLLEIYDCL---------RLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       323 k~L~L~~~~---------~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      +.|+|+++.         .++.-...+++|+.|++++|.+
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            888885422         2223345678888888888876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.16  E-value=4.1e-11  Score=110.65  Aligned_cols=214  Identities=12%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             cceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccc--cCCCCccEEEEcceeccCCC------
Q 016087          107 RLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII--LCSNSIEILTLAGLKLESPR------  178 (395)
Q Consensus       107 ~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~------  178 (395)
                      .++.+.+.-.    ......+..........+++++++..... ....|..+  ..+++|+.|+|+++.+....      
T Consensus        65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            4666665532    22234455555555557899999976543 23344444  67889999999999876211      


Q ss_pred             -ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc------eEeeCCCCCcceEEecccc--ccchh---
Q 016087          179 -SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAE--ELQRL---  246 (395)
Q Consensus       179 -~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~------~~~i~~~~~L~~L~i~~c~--~l~~l---  246 (395)
                       ...+++|++|+|++|.+.... ...+..+++|++|++++|....      ......+++|+.|++++|.  .+...   
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence             125899999999999983211 1235679999999999997432      1223567899999999985  22332   


Q ss_pred             -hccCCceeEEEEeCCCCccc-ccccccc---cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc-hhccCCC
Q 016087          247 -CIIAQDVQEVSIQGPLPFQC-KFNLASC---KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSR  320 (395)
Q Consensus       247 -~~~~p~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~  320 (395)
                       ....++|++|+++++..... +..+..+   ++|++|++++|.++.  +..  ..+++|+.|+++++.--. .....++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~~~~~~~l~  294 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNRAPQPDELP  294 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCSCCCTTSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCCCchhhhCC
Confidence             23669999999999874433 3334444   799999999998772  121  124899999999975322 2245679


Q ss_pred             ccCEEecccC
Q 016087          321 SLKLLEIYDC  330 (395)
Q Consensus       321 ~Lk~L~L~~~  330 (395)
                      +|+.|++++.
T Consensus       295 ~L~~L~L~~N  304 (310)
T 4glp_A          295 EVDNLTLDGN  304 (310)
T ss_dssp             CCSCEECSST
T ss_pred             CccEEECcCC
Confidence            9999999854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=2.6e-11  Score=109.83  Aligned_cols=163  Identities=18%  Similarity=0.166  Sum_probs=102.4

Q ss_pred             hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC-C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      .+++++|++.....  ..++ .+..+++|++|++++|.+. .+ . ...+++|++|++++|.+..- ....+..+++|++
T Consensus        62 l~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  137 (272)
T 3rfs_A           62 LPNVRYLALGGNKL--HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTY  137 (272)
T ss_dssp             CTTCCEEECTTSCC--CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCCC--CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCE
Confidence            37899998865332  2333 5678999999999999876 22 2 23799999999999998421 1123567899999


Q ss_pred             EeeecCCCCceEe---eCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccch
Q 016087          213 LSLQLCPGLKNLE---LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKD  288 (395)
Q Consensus       213 L~l~~c~~~~~~~---i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~  288 (395)
                      |++++|... .+.   +..+++|+.|++++|                     ....+. ..++.+++|++|++++|.++.
T Consensus       138 L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN---------------------QLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCccC-ccCHHHhccCccCCEEECCCC---------------------CcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            999998432 111   223445555555544                     322111 124556777777777776553


Q ss_pred             HHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEeccc
Q 016087          289 EWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYD  329 (395)
Q Consensus       289 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~  329 (395)
                      . ....+..+++|+.|++++++    +...+++|+.|.++.
T Consensus       196 ~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          196 V-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI  231 (272)
T ss_dssp             C-CTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred             c-CHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence            2 12345667777777777764    223456677776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.15  E-value=5.2e-10  Score=111.85  Aligned_cols=105  Identities=10%  Similarity=0.055  Sum_probs=50.5

Q ss_pred             cCCceeEEEEeCCCCccc---ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCC-CccCE
Q 016087          249 IAQDVQEVSIQGPLPFQC---KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKL  324 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~  324 (395)
                      ..++|++|+++++....+   +..++.+++|++|++++|.+........+..+++|+.|+++++.--..+.... ++|+.
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~  454 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV  454 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence            344555555554442211   12234445555555555544321112223444555555555544222222233 46777


Q ss_pred             EecccCCCchhh---hhhCCCcceeEEeeeeee
Q 016087          325 LEIYDCLRLVEV---KIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       325 L~L~~~~~l~~l---~~~~~~L~~L~~~~~~~~  354 (395)
                      |+++++ .+..+   ...+++|+.|++++|.++
T Consensus       455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          455 LDLHNN-RIMSIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             EECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred             EECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence            777654 22222   235777888888877764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.15  E-value=2e-11  Score=115.27  Aligned_cols=199  Identities=15%  Similarity=0.044  Sum_probs=97.8

Q ss_pred             ccCCC-CccEEEEcceeccCCC--cc-C-----CCCCcEEEeeeeecC---hHHHHHHHcCC-CCccEEeeecCCCCceE
Q 016087          158 ILCSN-SIEILTLAGLKLESPR--SV-K-----LSSLTKLFLMRVDAT---DLVLQSLLIGC-PLIEYLSLQLCPGLKNL  224 (395)
Q Consensus       158 l~~~~-~L~~L~L~~~~~~~~~--~~-~-----~~~Lk~L~L~~~~~~---~~~l~~l~~~~-p~Le~L~l~~c~~~~~~  224 (395)
                      +..++ +|++|+|++|.+....  .. .     +++|++|+|++|.++   ...+...+..+ ++|++|++++|......
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            33455 5666666666554111  11 1     266666666666662   22334444444 56666666666422100


Q ss_pred             --e----eCC-CCCcceEEecccc----ccchhh---ccCC-ceeEEEEeCCCCccccc-----ccccc-cccceeEecc
Q 016087          225 --E----LSG-LTKLNKFEVCDAE----ELQRLC---IIAQ-DVQEVSIQGPLPFQCKF-----NLASC-KFLKYLRFAL  283 (395)
Q Consensus       225 --~----i~~-~~~L~~L~i~~c~----~l~~l~---~~~p-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~L~~  283 (395)
                        .    +.. .++|++|++++|.    ....+.   ...+ +|++|+++++.......     .+..+ ++|++|+|++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence              0    112 2366677666664    111111   1233 67777777665221111     12233 4777777777


Q ss_pred             cccchHH---HHHHhcc-CCCccEEEeeCCCCCc-------hhccCCCccCEEecccCC--C-----chhh---hhhCCC
Q 016087          284 THIKDEW---LCNQISK-FPLLESLLIAGCDDLK-------SINISSRSLKLLEIYDCL--R-----LVEV---KIAASS  342 (395)
Q Consensus       284 ~~~~~~~---~~~l~~~-~~~L~~L~L~~~~~l~-------~~~~~~~~Lk~L~L~~~~--~-----l~~l---~~~~~~  342 (395)
                      |.+++..   +...+.. .++|++|+|+++.--.       .....+++|+.|+++++.  .     +..+   ...+++
T Consensus       206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~  285 (362)
T 3goz_A          206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK  285 (362)
T ss_dssp             SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred             CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence            7665532   2222333 3477777777764211       112234677777776543  1     1112   134555


Q ss_pred             cceeEEeeeeeecc
Q 016087          343 LSIFKYSGDVISFQ  356 (395)
Q Consensus       343 L~~L~~~~~~~~~~  356 (395)
                      |+.|+++++++...
T Consensus       286 L~~LdL~~N~l~~~  299 (362)
T 3goz_A          286 IILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEECTTSCBCCGG
T ss_pred             eEEEecCCCcCCCc
Confidence            66666777765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.15  E-value=9.6e-11  Score=103.81  Aligned_cols=184  Identities=10%  Similarity=0.082  Sum_probs=98.6

Q ss_pred             CccEEEEcceecc--CCC-ccCCCCCcEEEeeeee-cChHHHHHHHcCCCCccEEeeecCCCCceEe---eCCCCCcceE
Q 016087          163 SIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKF  235 (395)
Q Consensus       163 ~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~~~~L~~L  235 (395)
                      +|+.|+++++.+.  .+. ...+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+.   +..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            6777777776655  222 2267777777777775 42100 1124567777777777633333322   2345677777


Q ss_pred             Eecccc--ccchhhccCCcee---EEEEeCC-CCccccc-ccccccccc-eeEecccccchHHHHHHhccCCCccEEEee
Q 016087          236 EVCDAE--ELQRLCIIAQDVQ---EVSIQGP-LPFQCKF-NLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESLLIA  307 (395)
Q Consensus       236 ~i~~c~--~l~~l~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  307 (395)
                      +++++.  .++. ....++|+   +|+++++ ....++. .+..+++|+ +|+++++.++. .....+.. ++|++|+++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcC
Confidence            777664  2222 12344554   7777776 4322222 255667777 77777766542 11122223 667777777


Q ss_pred             CCCCCchhc----cCC-CccCEEecccCCCchhhh-hhCCCcceeEEeee
Q 016087          308 GCDDLKSIN----ISS-RSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD  351 (395)
Q Consensus       308 ~~~~l~~~~----~~~-~~Lk~L~L~~~~~l~~l~-~~~~~L~~L~~~~~  351 (395)
                      +++.++.+.    ..+ ++|+.|+++++ .+..++ ...++|+.|++.++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence            765443332    234 66777777653 223332 24666777766554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.14  E-value=4.5e-10  Score=109.29  Aligned_cols=31  Identities=16%  Similarity=-0.042  Sum_probs=14.1

Q ss_pred             cccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++|+.|++++|.+..     +....++|+.|+++++
T Consensus       257 ~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN  287 (454)
T ss_dssp             TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             cccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence            445555555544332     1122345555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.14  E-value=2.2e-10  Score=114.56  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC--Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCc--
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLI--  210 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~--~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~L--  210 (395)
                      +++++|++....  ...+|..  .+++|++|++++|.+. .+  .. ..+++|++|+++++.+....    +..++.|  
T Consensus       100 ~~L~~L~Ls~N~--l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L  171 (562)
T 3a79_B          100 QDLEYLDVSHNR--LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHL  171 (562)
T ss_dssp             TTCCEEECTTSC--CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCE
T ss_pred             CCCCEEECCCCc--CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhcee
Confidence            455555554322  2244444  5666677777666654 12  22 25667777777776663322    2233444  


Q ss_pred             cEEeeecCC
Q 016087          211 EYLSLQLCP  219 (395)
Q Consensus       211 e~L~l~~c~  219 (395)
                      +.|++.+|.
T Consensus       172 ~~L~L~~n~  180 (562)
T 3a79_B          172 SCILLDLVS  180 (562)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeccc
Confidence            666666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.14  E-value=2e-10  Score=98.72  Aligned_cols=101  Identities=20%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             cCCCCccEEeeecCCCCc--eEeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCC-Ccccccccccccccce
Q 016087          205 IGCPLIEYLSLQLCPGLK--NLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPL-PFQCKFNLASCKFLKY  278 (395)
Q Consensus       205 ~~~p~Le~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~  278 (395)
                      ..+++|++|++++|....  ...+..+++|+.|++++|.-   .......+++|+.|+++++. ...++ .+..+++|++
T Consensus        85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~  163 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKS  163 (197)
T ss_dssp             TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred             hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCE
Confidence            334444444444443221  11223344555555555430   01111245566666666554 33333 3555666777


Q ss_pred             eEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          279 LRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      |++++|.+++-.   .+..+++|+.|+++++
T Consensus       164 L~l~~n~i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          164 LNIQFDGVHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred             EECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence            777666655421   3455666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=122.04  Aligned_cols=80  Identities=13%  Similarity=0.032  Sum_probs=50.6

Q ss_pred             cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cc-hhhhhhCCCcceeE
Q 016087          274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RL-VEVKIAASSLSIFK  347 (395)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l-~~l~~~~~~L~~L~  347 (395)
                      ++|+.|+++++.+... ....+..+++|+.|+++++..-..   ....+++|++|+|+++.  .+ ......+++|+.|+
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            5677777777765432 133456678888888887642221   22345788888887653  22 13345688888888


Q ss_pred             Eeeeeee
Q 016087          348 YSGDVIS  354 (395)
Q Consensus       348 ~~~~~~~  354 (395)
                      +++|.+.
T Consensus       345 L~~N~i~  351 (844)
T 3j0a_A          345 LQKNHIA  351 (844)
T ss_dssp             CCSCCCC
T ss_pred             CCCCCCC
Confidence            8888653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=7.9e-11  Score=109.72  Aligned_cols=211  Identities=14%  Similarity=0.028  Sum_probs=139.6

Q ss_pred             CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      ++++.+++....  ...+ +..+..+++|++|++++|.+.  .+... .+++|++|+++++.+..  +.  ....++|++
T Consensus        54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~--~~~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IP--PNLPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CC--SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cC--ccccccCCE
Confidence            477777775433  2233 335667889999999988776  23333 78999999999988732  11  012378999


Q ss_pred             EeeecCCCCce--EeeCCCCCcceEEeccccc----cchhhccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087          213 LSLQLCPGLKN--LELSGLTKLNKFEVCDAEE----LQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       213 L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~----l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      |++.+|.....  ..+..+++|+.|+++++.-    .....+...+|++|+++++....++..+  .++|++|+++++.+
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence            99998854321  1245678999999998751    1111222238888888887644333222  37899999998886


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecc
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      +... ...+..+++|+.|+++++..-..   ....+++|+.|+++++.  .++.-...+++|+.|++++|+++..
T Consensus       206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence            6422 23457788999999988742221   23356899999998653  3333346789999999999987544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.14  E-value=1.9e-10  Score=101.88  Aligned_cols=190  Identities=12%  Similarity=0.013  Sum_probs=119.7

Q ss_pred             CCcEEEEEecCCCcccccc-cccCCCCccEEEEccee-cc--CCCc-cCCCCCcEEEeee-eecChHHHHHHHcCCCCcc
Q 016087          138 NVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLK-LE--SPRS-VKLSSLTKLFLMR-VDATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~-~~--~~~~-~~~~~Lk~L~L~~-~~~~~~~l~~l~~~~p~Le  211 (395)
                      +++++++....  ...+|. .+..+++|++|+++++. +.  .+.. ..+++|++|++++ +.+..-. ...+..+++|+
T Consensus        32 ~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCC
T ss_pred             cccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCC
Confidence            67777776533  234444 45568888888888885 54  2223 3788888888887 6653211 12356788888


Q ss_pred             EEeeecCCCCceEeeCCCCCcc---eEEeccccccchhh----ccCCcee-EEEEeCCCCcccccccccccccceeEecc
Q 016087          212 YLSLQLCPGLKNLELSGLTKLN---KFEVCDAEELQRLC----IIAQDVQ-EVSIQGPLPFQCKFNLASCKFLKYLRFAL  283 (395)
Q Consensus       212 ~L~l~~c~~~~~~~i~~~~~L~---~L~i~~c~~l~~l~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  283 (395)
                      .|++.+|....-..+..+++|+   .|+++++..+..+.    ..+++|+ +|+++++....++......++|+.|++.+
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            8888887533212244556666   88888873222221    2578888 99988876433333222237899999988


Q ss_pred             cc-cchHHHHHHhccC-CCccEEEeeCCCCCchhc-cCCCccCEEecccCCC
Q 016087          284 TH-IKDEWLCNQISKF-PLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDCLR  332 (395)
Q Consensus       284 ~~-~~~~~~~~l~~~~-~~L~~L~L~~~~~l~~~~-~~~~~Lk~L~L~~~~~  332 (395)
                      +. ++. .....+..+ ++|+.|+++++. ++.+. ..+++|+.|.+.+++.
T Consensus       189 n~~l~~-i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          189 NKYLTV-IDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             CTTCCE-ECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred             CCCccc-CCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence            84 552 223345677 899999998864 33333 2568899999887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.12  E-value=2.1e-10  Score=115.34  Aligned_cols=163  Identities=18%  Similarity=0.132  Sum_probs=118.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++.|++..+.  ...++ .+..+++|+.|+|++|.+. .+....+++|+.|+|++|.+..-  . .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEe
Confidence            678888775433  23344 4677899999999998876 33344889999999999988331  1 3677899999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      ++|.......+..+++|+.|.+++|.  .+ .....+++|+.|+++++....... +..+++|+.|+|++|.+.+-   .
T Consensus       117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l---~  191 (605)
T 1m9s_A          117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL---R  191 (605)
T ss_dssp             TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---G
T ss_pred             cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC---h
Confidence            98865432335567899999999885  33 222367889999998887444333 77888999999998887652   3


Q ss_pred             HhccCCCccEEEeeCCC
Q 016087          294 QISKFPLLESLLIAGCD  310 (395)
Q Consensus       294 l~~~~~~L~~L~L~~~~  310 (395)
                      .+..+++|+.|+|+++.
T Consensus       192 ~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          192 ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGTTCTTCSEEECCSEE
T ss_pred             HHccCCCCCEEEccCCc
Confidence            46778899999988864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.11  E-value=2.3e-10  Score=116.99  Aligned_cols=60  Identities=8%  Similarity=0.033  Sum_probs=29.7

Q ss_pred             CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      ++|+.|+++++..... +..+..+++|+.|+++++.+........+.++++|+.|+++++.
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            3455555555442211 22344566666666666655432212334555666666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=4.4e-10  Score=101.50  Aligned_cols=57  Identities=21%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             CCccEEEEcceecc-CC-C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          162 NSIEILTLAGLKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       162 ~~L~~L~L~~~~~~-~~-~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      ++|++|+++++.+. .+ . ...+++|++|+|+++.+..- ....+..+++|++|++++|.
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence            46777777776655 22 1 22567777777777665211 01123456666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.11  E-value=2.7e-10  Score=107.46  Aligned_cols=197  Identities=14%  Similarity=0.034  Sum_probs=134.3

Q ss_pred             ccccccCCCCccEEEEcceeccCCC------cc-CCC-CCcEEEeeeeecCh---HHHHHHHcCC-CCccEEeeecCCCC
Q 016087          154 LPEIILCSNSIEILTLAGLKLESPR------SV-KLS-SLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGL  221 (395)
Q Consensus       154 l~~~l~~~~~L~~L~L~~~~~~~~~------~~-~~~-~Lk~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~~~  221 (395)
                      +|..+...++|++|+|++|.+....      .. .++ +|++|+|++|.+++   ..+...+..+ +.|++|++++|...
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            3444444566999999999876222      22 677 99999999999943   4455555555 99999999999643


Q ss_pred             ceE------eeCCC-CCcceEEeccccccchh-----h--c-c-CCceeEEEEeCCCCcc-----ccccccccc-cccee
Q 016087          222 KNL------ELSGL-TKLNKFEVCDAEELQRL-----C--I-I-AQDVQEVSIQGPLPFQ-----CKFNLASCK-FLKYL  279 (395)
Q Consensus       222 ~~~------~i~~~-~~L~~L~i~~c~~l~~l-----~--~-~-~p~L~~L~l~~~~~~~-----~~~~~~~~~-~L~~L  279 (395)
                      ...      .+..+ ++|+.|++++|. +...     .  + . .++|++|+++++....     +...+...+ +|++|
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            111      12333 699999999996 2221     1  1 2 4699999999987321     111233444 99999


Q ss_pred             EecccccchH---HHHHHhccCC-CccEEEeeCCCCCch-----hcc----CCCccCEEecccCCCc-------hhhhhh
Q 016087          280 RFALTHIKDE---WLCNQISKFP-LLESLLIAGCDDLKS-----INI----SSRSLKLLEIYDCLRL-------VEVKIA  339 (395)
Q Consensus       280 ~L~~~~~~~~---~~~~l~~~~~-~L~~L~L~~~~~l~~-----~~~----~~~~Lk~L~L~~~~~l-------~~l~~~  339 (395)
                      +|++|.+++.   .+...+..++ +|+.|+|+++. +..     +..    ..++|++|+|+++.--       ..+...
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~  251 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS  251 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence            9999987654   3445566674 99999999986 222     221    2369999999865311       123356


Q ss_pred             CCCcceeEEeeee
Q 016087          340 ASSLSIFKYSGDV  352 (395)
Q Consensus       340 ~~~L~~L~~~~~~  352 (395)
                      +++|+.|++++|.
T Consensus       252 l~~L~~L~L~~n~  264 (362)
T 3goz_A          252 LKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTCSEEEEEHHH
T ss_pred             CCCccEEEeccCC
Confidence            8999999999997

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=6e-10  Score=95.64  Aligned_cols=150  Identities=19%  Similarity=0.093  Sum_probs=99.3

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  260 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~  260 (395)
                      .+++|++|+++++.+.+-  . -+..+++|++|++.+|.......+.                     .+++|++|++++
T Consensus        42 ~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~~~~~l~---------------------~l~~L~~L~l~~   97 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHATNYNPIS---------------------GLSNLERLRIMG   97 (197)
T ss_dssp             HHHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCSCCGGGT---------------------TCTTCCEEEEEC
T ss_pred             hcCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCCcchhhh---------------------cCCCCCEEEeEC
Confidence            577888888888887421  1 2566788888888877321111122                     355666666666


Q ss_pred             CCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc--cCCCccCEEecccCCCch-hh
Q 016087          261 PLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLV-EV  336 (395)
Q Consensus       261 ~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~~~~l~-~l  336 (395)
                      +.... ....++.+++|++|+++++.+++... ..+..+++|+.|++++|..+..+.  ..+++|+.|+++++.--. ..
T Consensus        98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~  176 (197)
T 4ezg_A           98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG  176 (197)
T ss_dssp             TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTT
T ss_pred             CccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHH
Confidence            55322 23346678999999999998876443 456788999999999987454443  356899999998664111 23


Q ss_pred             hhhCCCcceeEEeeeeeec
Q 016087          337 KIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       337 ~~~~~~L~~L~~~~~~~~~  355 (395)
                      ...+++|+.|+++++++..
T Consensus       177 l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGGCSSCCEEEECBC----
T ss_pred             hccCCCCCEEEeeCcccCC
Confidence            4678999999999998643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.09  E-value=4.1e-11  Score=110.77  Aligned_cols=201  Identities=14%  Similarity=0.069  Sum_probs=132.9

Q ss_pred             cccccccCCCCccEEEEcceecc---CCCcc--------CCCCCcEEEeeeeecChHHHHHH-HcCCCCccEEeeecCCC
Q 016087          153 NLPEIILCSNSIEILTLAGLKLE---SPRSV--------KLSSLTKLFLMRVDATDLVLQSL-LIGCPLIEYLSLQLCPG  220 (395)
Q Consensus       153 ~l~~~l~~~~~L~~L~L~~~~~~---~~~~~--------~~~~Lk~L~L~~~~~~~~~l~~l-~~~~p~Le~L~l~~c~~  220 (395)
                      .+|..+...  |+.|+|+++.+.   .+...        .+++|++|+|+++.++......+ +..+++|++|++++|..
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            445544433  788888877663   22222        58999999999999843222222 37789999999999854


Q ss_pred             CceE-eeCC-----CCCcceEEecccc--ccc-hhhccCCceeEEEEeCCCCcc---cc--cccccccccceeEeccccc
Q 016087          221 LKNL-ELSG-----LTKLNKFEVCDAE--ELQ-RLCIIAQDVQEVSIQGPLPFQ---CK--FNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       221 ~~~~-~i~~-----~~~L~~L~i~~c~--~l~-~l~~~~p~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~L~~~~~  286 (395)
                      .... .+..     .++|++|+++++.  .+. ......++|++|+++++....   ..  ..++.+++|++|++++|.+
T Consensus       134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            3211 1112     2799999999885  222 122367899999999886221   11  1237789999999999987


Q ss_pred             ch--HHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchhhhhhC-CCcceeEEeeeeeecc
Q 016087          287 KD--EWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAA-SSLSIFKYSGDVISFQ  356 (395)
Q Consensus       287 ~~--~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~l~~~~-~~L~~L~~~~~~~~~~  356 (395)
                      +.  .....++..+++|+.|+++++.--...    ....++|++|+++++. +.+++... ++|+.|++++|.++..
T Consensus       214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred             cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCC
Confidence            73  334456678899999999987533322    2235899999998653 23444322 6899999999987654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.09  E-value=2e-10  Score=120.44  Aligned_cols=102  Identities=22%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      .+++.+++..... ....+..+..+++|+.|+|+++.+.  .+.. ..+++|++|+|++|.++.-. ...+..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEE
Confidence            4566666643221 1112333445666666666666554  2222 25666666666666652110 1123456666666


Q ss_pred             eeecCCCCc--eEeeCCCCCcceEEeccc
Q 016087          214 SLQLCPGLK--NLELSGLTKLNKFEVCDA  240 (395)
Q Consensus       214 ~l~~c~~~~--~~~i~~~~~L~~L~i~~c  240 (395)
                      ++++|....  ...+..+++|+.|+++++
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence            666653211  112234455666666555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.09  E-value=2.1e-10  Score=117.36  Aligned_cols=105  Identities=13%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             cCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHH-------HHHhccCCCccEEEeeCCCCCchh----c
Q 016087          249 IAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWL-------CNQISKFPLLESLLIAGCDDLKSI----N  316 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~-------~~l~~~~~~L~~L~L~~~~~l~~~----~  316 (395)
                      .+++|+.|+++++....++ ..+..+++|+.|++++|.++.-..       ...+..+++|+.|+++++. ++.+    .
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~  556 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF  556 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence            4456666666655432222 124556666666666665442110       0124555666666666653 2222    1


Q ss_pred             cCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          317 ISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       317 ~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                      ..+++|+.|+++++.  .++ .....+++|+.|++++|.++
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            234566666665331  111 22244566666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.08  E-value=4.6e-10  Score=102.62  Aligned_cols=163  Identities=18%  Similarity=0.135  Sum_probs=123.3

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++.+++..+.  ...++ .+..+++|+.|++++|.+. .+....+++|++|+++++.+..  +. -+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEEC
Confidence            478888875443  23344 3667899999999999876 3334489999999999999843  12 2778999999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      ++|....-..+..+++|+.|++++|.  .+. ....+++|+.|+++++....... +..+++|+.|++++|.+++-   .
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l---~  194 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL---R  194 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---G
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC---h
Confidence            99864432345567899999999985  332 22368999999999987544433 78899999999999988753   2


Q ss_pred             HhccCCCccEEEeeCCC
Q 016087          294 QISKFPLLESLLIAGCD  310 (395)
Q Consensus       294 l~~~~~~L~~L~L~~~~  310 (395)
                      .+..+++|+.|++++++
T Consensus       195 ~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          195 ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGTTCTTCSEEEEEEEE
T ss_pred             hhccCCCCCEEECcCCc
Confidence            36889999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.07  E-value=7.8e-10  Score=99.84  Aligned_cols=188  Identities=15%  Similarity=0.094  Sum_probs=132.4

Q ss_pred             CccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe---eCCCCCcceEEec
Q 016087          163 SIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVC  238 (395)
Q Consensus       163 ~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~~~~L~~L~i~  238 (395)
                      +++.+++++..+. .|... .++|++|+|+++.+..-. ...+..+++|++|+++++... .+.   +..+++|+.|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            4778888887765 33332 378999999999883211 123577999999999998543 221   2457899999999


Q ss_pred             ccc--ccch-hhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc-
Q 016087          239 DAE--ELQR-LCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-  313 (395)
Q Consensus       239 ~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-  313 (395)
                      ++.  .+.. ....+++|++|+++++....+. ..++.+++|++|+++++.++.- ....+..+++|+.|+++++..-. 
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCCcCcEe
Confidence            885  2222 1236789999999998744333 3367899999999999987642 23346788999999999874221 


Q ss_pred             -h-hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          314 -S-INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       314 -~-~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                       . ....+++|++|+|+++.  .++ .....+++|+.|++++|++.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             1 12346899999998653  222 23456899999999999863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.05  E-value=2.8e-10  Score=114.43  Aligned_cols=141  Identities=18%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecc
Q 016087          161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD  239 (395)
Q Consensus       161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~  239 (395)
                      +++|+.|.+++|.+. .+....+++|+.|+|++|.+..-..   +..+++|+.|+|++|.......+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            344555555554443 2222245555555555555421110   444555555555555322111233444555555555


Q ss_pred             cc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          240 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       240 c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      |.  .+.. ...+++|+.|.++++....+ ..+..+++|+.|+|++|.+.+...   +..+++|+.|+|++|
T Consensus       119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          119 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             SCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred             CCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence            43  1111 11345555555555442222 233445555555555554443211   444555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.03  E-value=2.1e-09  Score=104.50  Aligned_cols=204  Identities=16%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++++++.....  ..+| .+..+++|++|+++++.+. .+.  ..++|++|+++++.+..  +. -+..+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEEC
Confidence            4677777754332  2355 3566777777777776554 221  23456666666665522  11 1344555555555


Q ss_pred             ecCCCCc--------------------eEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccc
Q 016087          216 QLCPGLK--------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKF  275 (395)
Q Consensus       216 ~~c~~~~--------------------~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~  275 (395)
                      ++|....                    -..+..+++|+.|+++++. +..+....++|++|+++++....++   ...++
T Consensus       203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~---~~~~~  278 (454)
T 1jl5_A          203 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLP---ELPQS  278 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred             CCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccC---cccCc
Confidence            5543210                    0012334555555555542 2222222345555555554422111   11244


Q ss_pred             cceeEecccccchH--H-------------HHHHhccC-CCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhh
Q 016087          276 LKYLRFALTHIKDE--W-------------LCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIA  339 (395)
Q Consensus       276 L~~L~L~~~~~~~~--~-------------~~~l~~~~-~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~  339 (395)
                      |+.|++++|.+++-  .             +.. +..+ ++|+.|+++++. +..+...+++|+.|+++++ .+..++..
T Consensus       279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~l~~lp~~  355 (454)
T 1jl5_A          279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPEL  355 (454)
T ss_dssp             CCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCC
T ss_pred             CCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCc-cccccccCCcCCEEECCCC-ccccccch
Confidence            55555554443320  0             000 1122 366677666653 3334444577888888755 33344446


Q ss_pred             CCCcceeEEeeeeeec
Q 016087          340 ASSLSIFKYSGDVISF  355 (395)
Q Consensus       340 ~~~L~~L~~~~~~~~~  355 (395)
                      +++|++|++++|++..
T Consensus       356 l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CTTCCEEECCSSCCSS
T ss_pred             hhhccEEECCCCCCCc
Confidence            7788888888887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.01  E-value=1.2e-09  Score=98.95  Aligned_cols=188  Identities=16%  Similarity=0.124  Sum_probs=128.0

Q ss_pred             CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      ++++++++....  ...++. .+..+++|++|++++|.+.  .+. ...+++|++|+++++.+..... ..+..+++|++
T Consensus        28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred             CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence            468888775432  333443 5667899999999998776  232 3378999999999998833211 23567899999


Q ss_pred             EeeecCCCC--ceEeeCCCCCcceEEecccc--c--cchhhccCCceeEEEEeCCCCcccc-cccccccccc----eeEe
Q 016087          213 LSLQLCPGL--KNLELSGLTKLNKFEVCDAE--E--LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLK----YLRF  281 (395)
Q Consensus       213 L~l~~c~~~--~~~~i~~~~~L~~L~i~~c~--~--l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~L  281 (395)
                      |++.+|...  ....+..+++|+.|+++++.  .  +.......++|++|+++++....+. ..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            999988543  22245677899999999885  2  2333346799999999998743322 2355566666    7888


Q ss_pred             cccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccC
Q 016087          282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDC  330 (395)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~  330 (395)
                      +++.+..-.  .......+|+.|+++++. ++.+    ...+++|+.|++++.
T Consensus       185 s~n~l~~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          185 SLNPMNFIQ--PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CSSCCCEEC--TTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCCcccccC--ccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            888766321  122334589999999875 3322    234689999999853

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.96  E-value=1.3e-09  Score=98.15  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             ccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087          158 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  236 (395)
Q Consensus       158 l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~  236 (395)
                      +..+++|+.|++++|.+. .+....+++|++|+|+++.+++-..   +..+++|+.|++++|....-..+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            345677777777777665 3333367788888888877732211   6677888888888775332111223 6788888


Q ss_pred             ecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          237 VCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       237 i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      +++|.  .+.. ...+++|+.|+++++....++ .+..+++|+.|++++|.+++.   ..+..+++|+.|++++++
T Consensus       113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             ccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            88774  2222 225778888888887644443 466788888888888887654   456778888888888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.96  E-value=2.2e-09  Score=98.05  Aligned_cols=184  Identities=19%  Similarity=0.110  Sum_probs=113.2

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  214 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~  214 (395)
                      +++++++.  ......+|..+.  ++++.|+|+++.+.  .+. ...+++|++|+|+++.++.-..   ...+++|+.|+
T Consensus        11 ~l~~l~~~--~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNCD--KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEECT--TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred             CccEEECC--CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence            44455443  233345555443  57888888887765  122 2367888888888887732111   15678888888


Q ss_pred             eecCCCCce-EeeCCCCCcceEEecccc--ccch-hhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchH
Q 016087          215 LQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDE  289 (395)
Q Consensus       215 l~~c~~~~~-~~i~~~~~L~~L~i~~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~  289 (395)
                      ++++....- ..+..+++|+.|.++++.  .+.. .....++|++|+++++....++. .+..+++|+.|+|++|.++. 
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-
Confidence            888753311 123456788888888774  2221 12256788888888876433332 35677888999998887663 


Q ss_pred             HHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEeccc
Q 016087          290 WLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYD  329 (395)
Q Consensus       290 ~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~  329 (395)
                      .....+..+++|+.|+++++.  .+.......++|+.|.|.+
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence            223345678888999888864  2222222346788888873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.94  E-value=1.8e-09  Score=96.29  Aligned_cols=89  Identities=21%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             CCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087          149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  224 (395)
Q Consensus       149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-  224 (395)
                      .....+|..+.  ++|+.|+|+++.+.  .+. ...+++|++|+|+++.+..-. ...+..+++|+.|++++|...... 
T Consensus        24 ~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           24 KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccCh
Confidence            33445555443  56777887777665  222 226777777777777763211 122455677777777766432110 


Q ss_pred             -eeCCCCCcceEEeccc
Q 016087          225 -ELSGLTKLNKFEVCDA  240 (395)
Q Consensus       225 -~i~~~~~L~~L~i~~c  240 (395)
                       .+..+++|+.|+++++
T Consensus       101 ~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             hHhcccCCCCEEEcCCC
Confidence             1223445555555544

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.91  E-value=6.2e-10  Score=73.70  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             ccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087           18 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   55 (395)
Q Consensus        18 ~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw   55 (395)
                      ...++.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45588999999999999999999999999999999753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=1.2e-09  Score=98.29  Aligned_cols=166  Identities=14%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccc
Q 016087          162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  240 (395)
Q Consensus       162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c  240 (395)
                      .+++.++++++.+. .+....+++|++|+++++.+..-.   -+..+++|++|++++|.......+..+++|+.|+++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            34555555555544 222336889999999998873211   25678889999998885432222556677777777776


Q ss_pred             c--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccC
Q 016087          241 E--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINIS  318 (395)
Q Consensus       241 ~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~  318 (395)
                      .  .+..+..  ++|+.|+++++....++ .+..+++|+.|++++|.+++-   ..+..+++|+.|+++++.- .     
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i-~-----  163 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEI-T-----  163 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCC-C-----
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcC-c-----
Confidence            4  2222221  56666666665533222 245556666666666655432   1344455555555555421 1     


Q ss_pred             CCccCEEecccCCCchhhhhhCCCcceeEEeeeeeecc
Q 016087          319 SRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       319 ~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                                   .+ .....+++|+.|+++++++...
T Consensus       164 -------------~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 -------------NT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -------------BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -------------ch-HHhccCCCCCEEeCCCCcccCC
Confidence                         11 2234466666666666665433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.89  E-value=3.8e-09  Score=105.17  Aligned_cols=175  Identities=16%  Similarity=0.052  Sum_probs=106.2

Q ss_pred             HhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          135 LGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       135 ~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      ...+++.|++....  ...+|..+  .++|++|+|++|.+. .|  ..+++|++|+|++|.++.  +.. +.  .+|+.|
T Consensus        57 ~~~~L~~L~Ls~n~--L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L  125 (571)
T 3cvr_A           57 LINQFSELQLNRLN--LSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHL  125 (571)
T ss_dssp             HHTTCSEEECCSSC--CSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred             ccCCccEEEeCCCC--CCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence            34588888886543  33467655  378999999998876 44  457899999999988743  222 22  288888


Q ss_pred             eeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          214 SLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       214 ~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      ++++|.... +.. .+++|+.|+++++. +..+....++|+.|+++++....++. +.  ++|+.|+|++|.++.  +..
T Consensus       126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~  197 (571)
T 3cvr_A          126 DVDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA  197 (571)
T ss_dssp             ECCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC
T ss_pred             ECCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh
Confidence            888875332 222 56688888888774 33333356778888887776433333 33  778888887776652  111


Q ss_pred             HhccCCCc-------cEEEeeCCC--CCchhccCCCccCEEecccCC
Q 016087          294 QISKFPLL-------ESLLIAGCD--DLKSINISSRSLKLLEIYDCL  331 (395)
Q Consensus       294 l~~~~~~L-------~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~~~  331 (395)
                       +.  .+|       +.|+++++.  .+......+++|+.|+|+++.
T Consensus       198 -~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          198 -VP--VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             -HH--HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence             11  144       777776653  122211235666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.89  E-value=1.2e-09  Score=91.05  Aligned_cols=127  Identities=17%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             CCccEEEEcceecc---CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087          162 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  237 (395)
Q Consensus       162 ~~L~~L~L~~~~~~---~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i  237 (395)
                      ++|+.|++++|.+.   .+.. ..+++|+.|++++|.+..-   ..+..+++|+.|++++|....               
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~---------------   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFG---------------   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCch---------------
Confidence            45666666666543   2222 2455666666665555221   223344444444444442211               


Q ss_pred             ccccccchhhccCCceeEEEEeCCCCcccc--cccccccccceeEecccccchHHH--HHHhccCCCccEEEeeCCC
Q 016087          238 CDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWL--CNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       238 ~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~  310 (395)
                          .+......+++|++|+++++....++  ..+..+++|++|++++|.++....  ...+..+++|+.|++.+|.
T Consensus        86 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           86 ----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                12222224667777777766543332  345667788888887777554321  2356677888888777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.88  E-value=5.9e-09  Score=97.78  Aligned_cols=210  Identities=10%  Similarity=-0.011  Sum_probs=125.5

Q ss_pred             CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc--C-CCc-cCCCCCcEE-EeeeeecChHHHHHHHcCCCCc
Q 016087          137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--S-PRS-VKLSSLTKL-FLMRVDATDLVLQSLLIGCPLI  210 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~--~-~~~-~~~~~Lk~L-~L~~~~~~~~~l~~l~~~~p~L  210 (395)
                      .++++|+|....  ...+|.. +.++++|++|+|++|.+.  . +.. ..+++|+++ .+..+.+..- ....+..+++|
T Consensus        30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            578888886533  4466654 456889999999988753  2 222 267777664 4444554210 01235678899


Q ss_pred             cEEeeecCCCCceEee--CCCCCcceEEeccccccchhhc-----cCCceeEEEEeCCCCcccccccccccccceeEecc
Q 016087          211 EYLSLQLCPGLKNLEL--SGLTKLNKFEVCDAEELQRLCI-----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFAL  283 (395)
Q Consensus       211 e~L~l~~c~~~~~~~i--~~~~~L~~L~i~~c~~l~~l~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  283 (395)
                      +.|++.+|........  ....++..|.+.++..+..+..     ....++.|.++++....++.......+|+.|.+..
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            9999988754321111  1223666777766654333321     23467788888776444443334456788888865


Q ss_pred             cccchHHHHHHhccCCCccEEEeeCCCCCchhcc-CCCccCEEecccCCCchhhh--hhCCCcceeEEee
Q 016087          284 THIKDEWLCNQISKFPLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG  350 (395)
Q Consensus       284 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~  350 (395)
                      +..........+..+++|+.|+++++. ++.+.. .+.+|++|.+.++.++.+++  .++++|+.+++.+
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            332222223345677888888888764 444433 35677777777666666554  4577777777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.84  E-value=9.2e-09  Score=102.42  Aligned_cols=174  Identities=15%  Similarity=0.064  Sum_probs=87.9

Q ss_pred             CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccc
Q 016087          162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  240 (395)
Q Consensus       162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c  240 (395)
                      .+|+.|+|+++.+. .|... +++|++|+|++|.++.  +.   ..+++|+.|++++|.... +.. -..+|+.|+++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence            36666766666554 23222 3667777776666631  11   345666777776663321 111 1116666666666


Q ss_pred             cccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCC
Q 016087          241 EELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSR  320 (395)
Q Consensus       241 ~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~  320 (395)
                      . +..+...+++|+.|+++++....++.   .+++|++|+|++|.++.  +.. +.  ++|+.|+|+++. ++.+..-.+
T Consensus       131 ~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~  200 (571)
T 3cvr_A          131 Q-LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV  200 (571)
T ss_dssp             C-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred             c-CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence            4 22122245666777666665332222   35666677776666543  111 21  666777666653 222222112


Q ss_pred             cc-------CEEecccCC--CchhhhhhCCCcceeEEeeeee
Q 016087          321 SL-------KLLEIYDCL--RLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       321 ~L-------k~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      +|       +.|+|+++.  .++.-...+++|+.|++++|++
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            44       666666432  2222223466667777666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.84  E-value=9.8e-10  Score=89.72  Aligned_cols=58  Identities=16%  Similarity=0.033  Sum_probs=27.4

Q ss_pred             CCceeEEEEeCCCCcccc--cccccccccceeEecccccchHHH--HHHhccCCCccEEEee
Q 016087          250 AQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWL--CNQISKFPLLESLLIA  307 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~  307 (395)
                      +++|++|+++++.....+  ..++.+++|++|++++|.+++...  ...+..+++|+.|+++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            455555555554432221  334455566666665555443211  1344555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.81  E-value=1.2e-08  Score=90.97  Aligned_cols=144  Identities=16%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEec
Q 016087          162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVC  238 (395)
Q Consensus       162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~  238 (395)
                      .+.+.++++++.+. .|... .++|++|+|+++.+..-. ...+..+++|++|++++|......  .+..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45778888887766 44333 378999999999883211 123567899999999888533211  13455677777777


Q ss_pred             cccccchh----hccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          239 DAEELQRL----CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       239 ~c~~l~~l----~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++. +..+    ....++|++|+++++....++. .+..+++|++|+|+++.++.- ....+..+++|+.|+|+++
T Consensus        92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCC
Confidence            664 1111    1245566666666654332222 234556666666666554421 1123444555666665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=1.2e-07  Score=89.09  Aligned_cols=205  Identities=13%  Similarity=0.036  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCc-hhHHHHHHHH-HhCCCcEEEEEecCCC--------ccccccc
Q 016087           88 REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL-PYIDQCIFYA-LGCNVKELSLELLGNP--------RFNLPEI  157 (395)
Q Consensus        88 ~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~l~~~-~~~~l~~L~l~~~~~~--------~~~l~~~  157 (395)
                      ..+.+...+++.....  ..++.+.+.... ...... ..++.+...+ ..++++.|.+......        ...+...
T Consensus        91 ~~~~~~~~~fl~~~~~--~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l  167 (362)
T 2ra8_A           91 EEGVNLMDKILKDKKL--PSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV  167 (362)
T ss_dssp             HTTCCHHHHHHHCTTG--GGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred             ccHHHHHHHHhcCCCc--hhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence            4455566666655543  468888777432 110111 2334443322 2379999988432111        1134455


Q ss_pred             ccCCCCccEEEEccee-ccCCCccCCCCCcEEEeeeeecChHHHHHHHc-CCCCccEEeeecCCCC--ceEeeCCCCCcc
Q 016087          158 ILCSNSIEILTLAGLK-LESPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGL--KNLELSGLTKLN  233 (395)
Q Consensus       158 l~~~~~L~~L~L~~~~-~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~--~~~~i~~~~~L~  233 (395)
                      +..+++|+.|.|.++. ...+. ...++|++|.|..+.++.+.+..+.. .+|+|+.|+|..+...  ....+.      
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~------  240 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN------  240 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG------
T ss_pred             HhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH------
Confidence            5678999999999873 33333 45899999999999998888877763 6999999998642110  000000      


Q ss_pred             eEEeccccccchhh--ccCCceeEEEEeCCCCcc----cccccccccccceeEecccccchHHHHHHh---ccCCCccEE
Q 016087          234 KFEVCDAEELQRLC--IIAQDVQEVSIQGPLPFQ----CKFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESL  304 (395)
Q Consensus       234 ~L~i~~c~~l~~l~--~~~p~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L  304 (395)
                              .+..+.  ..+|+|+.|.+.++....    .....+.+++|++|+|+.|.+.+.....+.   ..+++|+.|
T Consensus       241 --------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L  312 (362)
T 2ra8_A          241 --------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI  312 (362)
T ss_dssp             --------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred             --------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence                    000000  123455555554433110    011123456777777777666665444433   345677777


Q ss_pred             EeeCCC
Q 016087          305 LIAGCD  310 (395)
Q Consensus       305 ~L~~~~  310 (395)
                      +|++|.
T Consensus       313 ~L~~n~  318 (362)
T 2ra8_A          313 NMKYNY  318 (362)
T ss_dssp             ECCSBB
T ss_pred             ECCCCc
Confidence            776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.72  E-value=9.2e-09  Score=88.87  Aligned_cols=65  Identities=26%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             cccccccccCCCCccEEEEcceecc-CC-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                      ...+|..+  .++|++|+++++.+. .+ .. ..+++|++|+++++.+..- ....+..+++|++|++++|
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC
Confidence            34445433  346777777776655 22 21 2566777777766665211 0112344555666666555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.70  E-value=2.2e-08  Score=86.47  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=75.8

Q ss_pred             CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhh-ccCCceeEE
Q 016087          182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEV  256 (395)
Q Consensus       182 ~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L  256 (395)
                      .++|++|+++++.++.- ....+..+++|++|++.++......  .+..+++|+.|+++++.  .+..-. ...++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            45677777777666311 1122455667777777666332111  12345667777776664  111111 245667777


Q ss_pred             EEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecc
Q 016087          257 SIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY  328 (395)
Q Consensus       257 ~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~  328 (395)
                      +++++....+.. .+..+++|++|+++++.++.- ....+..+++|+.|++++++    +...+++|+.|.++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~L~~~  173 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEW  173 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BCCCTTTTHHHHHH
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----eecCCCCHHHHHHH
Confidence            776665332222 245667777777777665431 12334566777777777764    22345566666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.69  E-value=2.1e-08  Score=83.44  Aligned_cols=103  Identities=21%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++++++..+......+|..+..+++|+.|++++|.+. ......+++|++|++++|.+... +...+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            578888887654433467877778999999999999876 32333799999999999999432 4455667999999999


Q ss_pred             ecCCCCce---EeeCCCCCcceEEeccc
Q 016087          216 QLCPGLKN---LELSGLTKLNKFEVCDA  240 (395)
Q Consensus       216 ~~c~~~~~---~~i~~~~~L~~L~i~~c  240 (395)
                      ++|.....   ..+..+++|+.|++++|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            99853221   12334455555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.62  E-value=8e-08  Score=96.88  Aligned_cols=174  Identities=19%  Similarity=0.180  Sum_probs=82.9

Q ss_pred             CCCCCcEEEeeeeecC-hHHHHHHHcCCCCccEEeeecCCCCc-eEeeCCCCCcceEEeccccccch----hhccCCcee
Q 016087          181 KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLK-NLELSGLTKLNKFEVCDAEELQR----LCIIAQDVQ  254 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~-~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~~~~L~~L~i~~c~~l~~----l~~~~p~L~  254 (395)
                      .+++|+.|+++.+.+. ..........++.|+.|++..+.... ......+++|+.+.+..+.....    .....++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            4566666666666551 11111223345566666665553211 01122345666666665531111    112345555


Q ss_pred             EEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEeccc
Q 016087          255 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYD  329 (395)
Q Consensus       255 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~  329 (395)
                      .++++.+.... .+..+..+++|+.|+++++..........+..+++|+.|+|+++. ++.+    ...+++|+.|+|++
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC
Confidence            66555544211 122344456666666666543332223344556666666666653 2221    22346666666664


Q ss_pred             CC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087          330 CL--RLV-EVKIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       330 ~~--~l~-~l~~~~~~L~~L~~~~~~~~~  355 (395)
                      +.  .+. ....++++|+.|++++|.++.
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            42  222 223456666666666665533

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.62  E-value=1e-07  Score=83.63  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             CCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087          149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  224 (395)
Q Consensus       149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-  224 (395)
                      .....+|..+  .++|++|+|+++.+.  .+.. ..+++|++|+|+++.+..-. ...+..+++|+.|++++|...... 
T Consensus        29 ~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           29 KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh
Confidence            3345555544  267888888887765  2222 26778888888877762110 122455677777777776322100 


Q ss_pred             -eeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087          225 -ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES  303 (395)
Q Consensus       225 -~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  303 (395)
                       .+..+++|+.|+++                     ++....++..+..+++|++|+|++|.++.- ....+..+++|+.
T Consensus       106 ~~~~~l~~L~~L~Ls---------------------~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  163 (229)
T 3e6j_A          106 AVFDRLVHLKELFMC---------------------CNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTH  163 (229)
T ss_dssp             TTTTTCTTCCEEECC---------------------SSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             hHhCcchhhCeEecc---------------------CCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCE
Confidence             11233444444444                     444323333344555555555555554321 1123444555666


Q ss_pred             EEeeCC
Q 016087          304 LLIAGC  309 (395)
Q Consensus       304 L~L~~~  309 (395)
                      |++.++
T Consensus       164 L~l~~N  169 (229)
T 3e6j_A          164 AYLFGN  169 (229)
T ss_dssp             EECTTS
T ss_pred             EEeeCC
Confidence            655554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.62  E-value=1.1e-07  Score=89.38  Aligned_cols=149  Identities=16%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             CCCCCcEEEeeeeec--------ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc----ccchhhc
Q 016087          181 KLSSLTKLFLMRVDA--------TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE----ELQRLCI  248 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~--------~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~----~l~~l~~  248 (395)
                      .+++|+.|.+.++..        +..++..++..+|+|++|++.+|.+.....+. .++|++|.+..|.    .+..+..
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            355666665544322        11246678889999999999988443222222 5799999998775    2223332


Q ss_pred             -cCCceeEEEEeCCC---Ccc--c-----ccccccccccceeEecccccchHHHHHHh--ccCCCccEEEeeCCCCCch-
Q 016087          249 -IAQDVQEVSIQGPL---PFQ--C-----KFNLASCKFLKYLRFALTHIKDEWLCNQI--SKFPLLESLLIAGCDDLKS-  314 (395)
Q Consensus       249 -~~p~L~~L~l~~~~---~~~--~-----~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--~~~~~L~~L~L~~~~~l~~-  314 (395)
                       ..|+|++|.++.+.   ...  +     .+....+|+|++|+|.+|.+.+.....+.  ..+|+|++|+|+.+. +.. 
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~  294 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDE  294 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChH
Confidence             68999999986321   111  1     11123579999999999888765444333  357899999997654 433 


Q ss_pred             ----hc---cCCCccCEEecccCC
Q 016087          315 ----IN---ISSRSLKLLEIYDCL  331 (395)
Q Consensus       315 ----~~---~~~~~Lk~L~L~~~~  331 (395)
                          +.   ..+++|+.|+|++|.
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHHhhcccCCcceEEECCCCc
Confidence                22   235788888887663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.60  E-value=3.1e-08  Score=80.62  Aligned_cols=82  Identities=26%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      ++++.+++..+......+|..+..+++|+.|++++|.+. ......+++|++|++++|.+... +...+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            456666665433322356666667888888888887765 32233678888888888887432 3445566788888888


Q ss_pred             ecCC
Q 016087          216 QLCP  219 (395)
Q Consensus       216 ~~c~  219 (395)
                      ++|.
T Consensus        96 s~N~   99 (149)
T 2je0_A           96 SGNK   99 (149)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            7774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.57  E-value=7.3e-08  Score=80.86  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             cCCCCccEEEEcceecc-CCCccC-CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087          159 LCSNSIEILTLAGLKLE-SPRSVK-LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  236 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~-~~~~~~-~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~  236 (395)
                      ..+.+|+.|++++|.+. .+.... .++|+.|++++|.+..-   ..+..+++|+.|++++|... .+.           
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~-----------   80 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIG-----------   80 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EEC-----------
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccC-----------
Confidence            44667777777777655 222222 33666666666665321   12344455555555554211 110           


Q ss_pred             eccccccchhhccCCceeEEEEeCCCCccccc--ccccccccceeEecccccchH--HHHHHhccCCCccEEEeeCC
Q 016087          237 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF--NLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       237 i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L~L~~~  309 (395)
                             ..+...+++|++|+++++....++.  .+..+++|++|++++|.+...  ....++..+|+|+.|++.++
T Consensus        81 -------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           81 -------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             -------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             -------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence                   0011234555555555554322222  344556666666666554321  11123455566666655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.55  E-value=6.7e-08  Score=81.10  Aligned_cols=131  Identities=13%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++++++....  ...++......++|++|++++|.+. .+....+++|++|++++|.++.-. ..++..+++|+.|++
T Consensus        19 ~~L~~L~l~~n~--l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSC--CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCC--CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEEC
Confidence            467777775433  3345543333459999999998876 333447999999999999984211 123466899999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccccc----ccccccccceeEecccccch
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTHIKD  288 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~  288 (395)
                      ++|.... +.                .+. ....+++|+.|+++++.....+.    .+..+++|+.|+++.+...+
T Consensus        96 ~~N~i~~-~~----------------~~~-~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLVE-LG----------------DLD-PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCCC-GG----------------GGG-GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCCc-ch----------------hhH-hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9885321 00                000 11145666666666655322222    25678889999988877554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.54  E-value=1.1e-07  Score=82.82  Aligned_cols=65  Identities=20%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             ccccccccCCCCccEEEEcceecc-C-CC--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          152 FNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       152 ~~l~~~l~~~~~L~~L~L~~~~~~-~-~~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      ..+|..+  .+.++.|+|+++.+. . +.  ...+++|++|+|+++.++.-. ...+..+++|++|++++|.
T Consensus        24 ~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           24 NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc
Confidence            3455433  234566666666554 1 21  125666666666666652110 1123445556666665553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.54  E-value=1.6e-07  Score=88.39  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=90.5

Q ss_pred             CcccccccccCCCCccEEEEcceecc--CCCcc--CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087          150 PRFNLPEIILCSNSIEILTLAGLKLE--SPRSV--KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  224 (395)
Q Consensus       150 ~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~--~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-  224 (395)
                      ....+|..+  .+.++.|+|+++.+.  .+...  .+++|++|+|+++.+..-. ...+..+++|+.|++++|... .+ 
T Consensus        29 ~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~-~~~  104 (361)
T 2xot_A           29 QLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLH-TLD  104 (361)
T ss_dssp             CCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred             CcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCC-cCC
Confidence            344555543  245778888887665  22222  6788888888887773211 112456778888888877532 22 


Q ss_pred             --eeCCCCCcceEEecccc--ccch-hhccCCceeEEEEeCCCCccccccc----ccccccceeEecccccchHHHHHHh
Q 016087          225 --ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPFQCKFNL----ASCKFLKYLRFALTHIKDEWLCNQI  295 (395)
Q Consensus       225 --~i~~~~~L~~L~i~~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~~l~  295 (395)
                        .+..+++|+.|+++++.  .+.. .....++|+.|+++++....++...    ..+++|+.|+|++|.++.-. ...+
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~  183 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDL  183 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHH
T ss_pred             HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHh
Confidence              23456778888887774  1111 1225677888888777644333322    45778888888887765321 2234


Q ss_pred             ccCCC--ccEEEeeCC
Q 016087          296 SKFPL--LESLLIAGC  309 (395)
Q Consensus       296 ~~~~~--L~~L~L~~~  309 (395)
                      ..++.  |+.|+|.++
T Consensus       184 ~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          184 QKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HHSCHHHHTTEECCSS
T ss_pred             hhccHhhcceEEecCC
Confidence            44555  367777774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.53  E-value=6.8e-07  Score=90.03  Aligned_cols=136  Identities=19%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087          148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  224 (395)
Q Consensus       148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~  224 (395)
                      +.+...+|..+.  +++++|+|+++.+.  .+.. ..+++|++|+|++|.+..-. ...+.++++|++|+|++|.. ..+
T Consensus        40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l-~~l  115 (635)
T 4g8a_A           40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSL  115 (635)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEE
T ss_pred             CCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcC-CCC
Confidence            333445554432  35677777776655  2222 36777777777777662100 11245567777777777642 222


Q ss_pred             ---eeCCCCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcc--cccccccccccceeEecccccc
Q 016087          225 ---ELSGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       225 ---~i~~~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                         .+..+++|++|+++++.  .+....+ .+++|++|+++++....  .+..++.+++|++|+++++.++
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence               23456677777777664  2222212 45677777777665322  2334556677777777776644

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.52  E-value=3e-07  Score=80.09  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             CCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      +.....+|..+.  ++|+.|+++++.+.  .+.. ..+++|+.|+|+++.+..-. ...+.++++|+.|++++|.
T Consensus        20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC
T ss_pred             CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc
Confidence            333455565443  57888888877665  2222 36778888888877763210 1124556777777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=4.2e-08  Score=92.71  Aligned_cols=57  Identities=18%  Similarity=0.036  Sum_probs=27.4

Q ss_pred             CCccEEEEcceeccCC----CccCCCCCcEEEeeeeecChHHHHHHH----cCCCCccEEeeecC
Q 016087          162 NSIEILTLAGLKLESP----RSVKLSSLTKLFLMRVDATDLVLQSLL----IGCPLIEYLSLQLC  218 (395)
Q Consensus       162 ~~L~~L~L~~~~~~~~----~~~~~~~Lk~L~L~~~~~~~~~l~~l~----~~~p~Le~L~l~~c  218 (395)
                      ++|+.|+|++|.+...    -...+++|++|+|++|.+++.....+.    ..++.|++|++++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n  165 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN  165 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence            4566666666554310    011344566666666655444333322    23455555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=8.3e-08  Score=79.89  Aligned_cols=94  Identities=16%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             ccccccccCCCCccEEEEcceeccC---CCccCCCCCcEEEeeeeec-ChHHHHHHHcC---CCCccEEeeecCCCCceE
Q 016087          152 FNLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIG---CPLIEYLSLQLCPGLKNL  224 (395)
Q Consensus       152 ~~l~~~l~~~~~L~~L~L~~~~~~~---~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~l~~c~~~~~~  224 (395)
                      ..+|..-....+|++|++++|.+..   .....+++|++|+|++|.. ++.++..+...   |+.|++|+|++|..++..
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            3455543344579999999998652   2223799999999999974 99999988763   789999999999876332


Q ss_pred             ---eeCCCCCcceEEeccccccch
Q 016087          225 ---ELSGLTKLNKFEVCDAEELQR  245 (395)
Q Consensus       225 ---~i~~~~~L~~L~i~~c~~l~~  245 (395)
                         .+..+++|++|++++|+.+..
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence               334578888888888874443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.49  E-value=2.5e-07  Score=81.16  Aligned_cols=143  Identities=15%  Similarity=0.030  Sum_probs=91.1

Q ss_pred             ccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccc
Q 016087          164 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE  242 (395)
Q Consensus       164 L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~  242 (395)
                      .+.++.++..+. .|.. -.++|++|+|+++.+..-. ...+..+++|+.|++++|... .+..                
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~----------------   81 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPV----------------   81 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCT----------------
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcCh----------------
Confidence            456666666554 3332 2488999999999873211 123456777888888777421 1100                


Q ss_pred             cchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----cc
Q 016087          243 LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NI  317 (395)
Q Consensus       243 l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~  317 (395)
                        ......++|+.|+++++....++ ..+..+++|+.|+|+++.++  .+...+..+++|+.|+++++. +..+    ..
T Consensus        82 --~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  156 (229)
T 3e6j_A           82 --GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD  156 (229)
T ss_dssp             --TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTT
T ss_pred             --hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCc-CCccCHHHHh
Confidence              01124566667777666533322 23567899999999999877  233445789999999999974 3222    33


Q ss_pred             CCCccCEEecccC
Q 016087          318 SSRSLKLLEIYDC  330 (395)
Q Consensus       318 ~~~~Lk~L~L~~~  330 (395)
                      .+++|+.|++.+.
T Consensus       157 ~l~~L~~L~l~~N  169 (229)
T 3e6j_A          157 RLSSLTHAYLFGN  169 (229)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CCCCCCEEEeeCC
Confidence            4689999999753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.45  E-value=2.2e-08  Score=85.78  Aligned_cols=66  Identities=15%  Similarity=0.062  Sum_probs=38.0

Q ss_pred             cccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                      ...+|..+..+++|++|++++|.+. .+....+++|+.|++++|.+..  +...+..+++|+.|++++|
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence            3444556666777777777777665 3322256777777777776631  1222333455666666555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.43  E-value=2.4e-07  Score=87.50  Aligned_cols=83  Identities=19%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             cCCceeEEEEeCCCCcc-----cccccccccccceeEecccccchHHHH---HHhccCCCccEEEeeCCCCCc----hhc
Q 016087          249 IAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK----SIN  316 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~l~----~~~  316 (395)
                      ..++|++|+++++....     +...+..+++|++|+|++|.+++....   ..+...++|++|+|++|.--.    .+.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            35778888888876322     111235567788888888887765433   334566788888888774221    111


Q ss_pred             ---cCCCccCEEecccCC
Q 016087          317 ---ISSRSLKLLEIYDCL  331 (395)
Q Consensus       317 ---~~~~~Lk~L~L~~~~  331 (395)
                         ...++|++|+|+++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHCSSCCEEECTTSS
T ss_pred             HHHHhCCCCCEEeccCCC
Confidence               134677777777553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.42  E-value=7.4e-07  Score=77.63  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=87.0

Q ss_pred             cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc
Q 016087          165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE  241 (395)
Q Consensus       165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~  241 (395)
                      +.++++++.+. +|.. -.+.+++|+|+++.+..-.....+..+++|+.|+++++......  .+..+++|+.|+++++.
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            46666666554 3322 24567788888877733211123466778888888777533111  24456778888888775


Q ss_pred             --ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          242 --ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       242 --~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                        .+..- ....++|++|+++++....+ +..+..+++|+.|+|++|.++.-. ...+..+++|+.|++++++
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcC
Confidence              22221 22567888888877764332 334666788888888887765321 2345667788888887754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=7.2e-07  Score=74.19  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             CCceeEEEEeCCCCccc-ccccccccccceeEecccc-cchHHHHHHhcc---CCCccEEEeeCCCCCchhc----cCCC
Q 016087          250 AQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH-IKDEWLCNQISK---FPLLESLLIAGCDDLKSIN----ISSR  320 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~----~~~~  320 (395)
                      ..+|++|+++++...+. ...+..+++|++|+|++|. ++|..+..+...   +++|++|+|++|..++.-+    ..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34567777776652221 1124567788888887775 777776666542   4678888888887775532    2467


Q ss_pred             ccCEEecccCCCch
Q 016087          321 SLKLLEIYDCLRLV  334 (395)
Q Consensus       321 ~Lk~L~L~~~~~l~  334 (395)
                      +|++|+|++|..+.
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            78888887777655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.39  E-value=3.4e-08  Score=84.66  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  260 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~  260 (395)
                      .+++|++|+++++.+..  +. .+..+++|+.|++++|..      .              .+......+++|++|++++
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l------~--------------~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI------K--------------KIENLDAVADTLEELWISY  102 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE------C--------------SCSSHHHHHHHCSEEEEEE
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc------c--------------cccchhhcCCcCCEEECcC
Confidence            56666777766666622  11 234455556665555421      0              1122222346777777777


Q ss_pred             CCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          261 PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      +....++ .+..+++|++|++++|.++.-.....+..+++|+.|++++++
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            6543333 456677888888887777653333456677777777777753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.39  E-value=5.2e-07  Score=78.59  Aligned_cols=141  Identities=13%  Similarity=0.070  Sum_probs=72.1

Q ss_pred             cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEecccc
Q 016087          165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE  241 (395)
Q Consensus       165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~  241 (395)
                      +.++++++.+. .|... .++|+.|+|+++.+..-. ...+..+++|+.|++++|.....  ..+..+++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666666554 33332 378999999999873211 11346678888888888753311  123345666666666653


Q ss_pred             --ccchhh-ccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeC
Q 016087          242 --ELQRLC-IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG  308 (395)
Q Consensus       242 --~l~~l~-~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  308 (395)
                        .+..-. ...++|+.|+++++....+ +..+..+++|++|+|++|.++.-. ...+..+++|+.|++++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCC
Confidence              111111 1345555555555542221 123444555555555555443211 11233444555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.33  E-value=4.7e-07  Score=84.71  Aligned_cols=202  Identities=12%  Similarity=0.149  Sum_probs=130.4

Q ss_pred             EecCCCcccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087          145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL  221 (395)
Q Consensus       145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~  221 (395)
                      .+.+.....+|..+  .+++++|+|+++.+. . +.. ..+++|++|+|++|.+...--...+.++++|.++.+.++..+
T Consensus        15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            33344456777655  368999999999887 3 333 379999999999998622111123567788887666655555


Q ss_pred             ceE---eeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC-Cccccc-cccc-ccccceeEecccccchHHHH
Q 016087          222 KNL---ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL-PFQCKF-NLAS-CKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       222 ~~~---~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~-~~~~~~-~~~~-~~~L~~L~L~~~~~~~~~~~  292 (395)
                      ..+   .+..+++|+.|.+.++.  .+.... ....++..+.+.++. ...++. .+.. ...++.|+++++.++.  +.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~  170 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IH  170 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--EC
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CC
Confidence            444   24567899999999885  222222 355678888887653 222221 2333 3468899999998763  12


Q ss_pred             HHhccCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCCchhhh-hhCCCcceeEEeee
Q 016087          293 NQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD  351 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~l~~l~-~~~~~L~~L~~~~~  351 (395)
                      .-....++|++|.+.++..++.+.    ..+++|+.|+|+++ .+..++ ....+|++|.+.++
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST  233 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTC
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccC
Confidence            222345679999998876666554    34589999999865 455554 34667777776555

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.22  E-value=4.3e-07  Score=81.67  Aligned_cols=36  Identities=36%  Similarity=0.702  Sum_probs=33.7

Q ss_pred             cccCCCCHHHHHHHhcCCCcccch-hhhhhhhhhhhh
Q 016087           19 DRISNLPEPILHHILSFLPFTQTV-QTRVLSRTWKRA   54 (395)
Q Consensus        19 d~is~LPdeil~~Ils~L~~~d~~-r~~~vsrrWr~l   54 (395)
                      ..+..||+||+.+||+|||.++++ ++++|||+|+++
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            457889999999999999999999 999999999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.16  E-value=2.4e-06  Score=80.30  Aligned_cols=160  Identities=16%  Similarity=0.083  Sum_probs=103.5

Q ss_pred             cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHc-CCCCccEEeeecCCCCceE---eeCCCCCcceEEecc
Q 016087          165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCD  239 (395)
Q Consensus       165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~  239 (395)
                      +.++++++.+. +|.. -.+.++.|+|+++.++.-... .+. .+++|+.|++++|... .+   .+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence            56777776665 3332 346799999999998432111 233 7899999999998543 22   245678999999998


Q ss_pred             cc--ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHh---ccCCCccEEEeeCCCCC
Q 016087          240 AE--ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESLLIAGCDDL  312 (395)
Q Consensus       240 c~--~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~l  312 (395)
                      +.  .+..- ....++|+.|+++++....+ +..+..+++|++|+|++|.++.-. ..++   ..+++|+.|+|+++. +
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~-l  175 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK-L  175 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC-C
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC-C
Confidence            85  22221 22578999999988874433 335677899999999988866411 1222   457889999998864 2


Q ss_pred             chhc----cCCCc--cCEEeccc
Q 016087          313 KSIN----ISSRS--LKLLEIYD  329 (395)
Q Consensus       313 ~~~~----~~~~~--Lk~L~L~~  329 (395)
                      ..+.    ..++.  |+.|.|.+
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CccCHHHhhhccHhhcceEEecC
Confidence            2221    12343  46777763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.13  E-value=2.3e-06  Score=85.33  Aligned_cols=99  Identities=22%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhhccCCceeEEEE
Q 016087          183 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSI  258 (395)
Q Consensus       183 ~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l  258 (395)
                      ..|+.|+|++|.++.  +.. +..+++|+.|++++|... .+  .+..+++|+.|+++++.  .++ -...+++|+.|++
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            357888888887733  222 566777888888777432 11  22334455555555443  222 1113445555555


Q ss_pred             eCCCCccc--ccccccccccceeEeccccc
Q 016087          259 QGPLPFQC--KFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       259 ~~~~~~~~--~~~~~~~~~L~~L~L~~~~~  286 (395)
                      +++.....  +..++.+++|+.|+|++|.+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            55443222  33344455555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.02  E-value=5.9e-07  Score=92.33  Aligned_cols=106  Identities=10%  Similarity=0.085  Sum_probs=59.3

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhhccCCceeEE
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEV  256 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L  256 (395)
                      .+++|+.|+|+++.+..  +..-+..++.|++|+|++|... .+  .+..+++|+.|+++++.  .++.....+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            45555555555555421  1111224555666666555322 11  12344556666666553  222212356778888


Q ss_pred             EEeCCCCcccccccccccccceeEecccccchH
Q 016087          257 SIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE  289 (395)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  289 (395)
                      +++++....++..++.+++|+.|+|++|.++..
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            888776555555677888899999988887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.02  E-value=8.6e-06  Score=81.14  Aligned_cols=185  Identities=12%  Similarity=0.024  Sum_probs=119.9

Q ss_pred             cCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeec------------ChHHHHHHHcCCCCccEEe-eecCCC--C
Q 016087          159 LCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDA------------TDLVLQSLLIGCPLIEYLS-LQLCPG--L  221 (395)
Q Consensus       159 ~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-l~~c~~--~  221 (395)
                      ..+++|+.|+|+++.+. .|.. ..+++|+.|+++++..            ........+..+++|+.|+ +..+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34677778888777665 3322 2677777777755531            0112334456677788877 333210  0


Q ss_pred             ceE-----eeC--CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087          222 KNL-----ELS--GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       222 ~~~-----~i~--~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                      ...     .+.  ....|+.|+++++.  .++. ...+++|+.|+++++....++..++.+++|+.|+|++|.++.  +.
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            000     111  11368889998885  4444 236789999999998866666678899999999999998875  23


Q ss_pred             HHhccCCCccEEEeeCCCC--C--chhccCCCccCEEecccCC--Cch----hhhhhCCCcceeE
Q 016087          293 NQISKFPLLESLLIAGCDD--L--KSINISSRSLKLLEIYDCL--RLV----EVKIAASSLSIFK  347 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~--l--~~~~~~~~~Lk~L~L~~~~--~l~----~l~~~~~~L~~L~  347 (395)
                       .+..+++|+.|+|+++.-  +  ......+++|+.|+|+++.  +++    .+...+|+|+.|+
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             578899999999998742  2  2223457899999998653  111    2335589999885

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.02  E-value=5.6e-06  Score=70.31  Aligned_cols=115  Identities=17%  Similarity=0.084  Sum_probs=54.8

Q ss_pred             cccccccccCCCCccEEEEcceecc-C-CC--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEee
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL  226 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i  226 (395)
                      ...+|..+.  .+|+.|+++++.+. . +.  ...+++|++|+|+++.++.-. ...+..+++|++|+++++.... +..
T Consensus        20 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-~~~   95 (192)
T 1w8a_A           20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKE-ISN   95 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCE-ECS
T ss_pred             cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCc-cCH
Confidence            344554432  26667777666554 1 11  225666666666666652210 1123445555566555553211 100


Q ss_pred             CCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccc-ccccccccccceeEecccccc
Q 016087          227 SGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       227 ~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~  287 (395)
                                        ......++|++|+++++..... +..+..+++|++|++++|.+.
T Consensus        96 ------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           96 ------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence                              0001334555555555442221 233455667777777666544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.00  E-value=9.4e-07  Score=78.62  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhh
Q 016087           21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKR   53 (395)
Q Consensus        21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~   53 (395)
                      |+.||+||+.+||+||+++|++++++|||+||.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            668999999999999999999999999999995

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.97  E-value=1.4e-05  Score=67.91  Aligned_cols=101  Identities=13%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEE
Q 016087          183 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVS  257 (395)
Q Consensus       183 ~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~  257 (395)
                      ++|++|+|+++.++.  +...+..+++|+.|+++++.....  ..+..+++|+.|+++++.  .+..- ....++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            455555555555421  112244455555555555532210  012233444444444442  11110 11334555555


Q ss_pred             EeCCCCccccc-ccccccccceeEecccc
Q 016087          258 IQGPLPFQCKF-NLASCKFLKYLRFALTH  285 (395)
Q Consensus       258 l~~~~~~~~~~-~~~~~~~L~~L~L~~~~  285 (395)
                      ++++....++. .+..+++|+.|++.+|.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            55544222222 23445555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.97  E-value=1.5e-05  Score=66.56  Aligned_cols=38  Identities=5%  Similarity=-0.003  Sum_probs=18.1

Q ss_pred             CCceeEEEEeCCCCcccccc-cccccccceeEecccccc
Q 016087          250 AQDVQEVSIQGPLPFQCKFN-LASCKFLKYLRFALTHIK  287 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~  287 (395)
                      .++|++|+++++....++.. +..+++|++|++++|.+.
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            34555555554442222221 344556666666655543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.93  E-value=4.8e-06  Score=85.58  Aligned_cols=108  Identities=16%  Similarity=0.073  Sum_probs=77.2

Q ss_pred             HHHHcCCCCccEEeeecCCCCce-EeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccc
Q 016087          201 QSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLK  277 (395)
Q Consensus       201 ~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~  277 (395)
                      ...+..++.|+.|+|++|....- ..+..+++|+.|+++++.  .++.....+++|+.|+++++....++..++.+++|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            34467789999999999864311 123357899999999885  233223467899999999988656666788899999


Q ss_pred             eeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          278 YLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       278 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      +|+|++|.++  .+...+..+++|+.|+|+++.
T Consensus       297 ~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          297 YFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EEECCSSCCC--CCCSSTTSCTTCCCEECTTSC
T ss_pred             EEECCCCCCC--ccChhhhcCCCccEEeCCCCc
Confidence            9999998875  223346788999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=2.2e-05  Score=72.58  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CCceeEEEEeCCCCc-ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc----cCCCccC-
Q 016087          250 AQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLK-  323 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk-  323 (395)
                      ..++..+.+.+.... ........|++|+.|+|..+.++. .....+.+|++|+++++.+.  ++.+.    ..|++|+ 
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence            445555555554311 111111236777777777654332 11234566777777777653  43332    2456677 


Q ss_pred             EEeccc-CCCch-hhhhhCCCcceeEEeeeee
Q 016087          324 LLEIYD-CLRLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       324 ~L~L~~-~~~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                      .+.+.+ ...+. ....+|++|+.+++.++.+
T Consensus       278 ~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          278 TLELPASVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             EEEECTTCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             EEEEcccceEEchhhhhCCccCCEEEeCCCcc
Confidence            777754 11222 3335677777777766554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.86  E-value=4e-05  Score=65.01  Aligned_cols=101  Identities=20%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             CceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEe
Q 016087          251 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLE  326 (395)
Q Consensus       251 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~  326 (395)
                      ++|++|+++++....++..+..+++|+.|+|+++.++.- ....+..+++|+.|+|+++. +..+    ...+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence            466666666665444444556667777777777665531 12335566777777777654 2211    22346777777


Q ss_pred             cccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087          327 IYDCL--RLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       327 L~~~~--~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                      |+++.  .+. .....+++|+.|++++|++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            76432  122 2234577788888777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.86  E-value=3e-05  Score=65.74  Aligned_cols=101  Identities=15%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087          137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  211 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le  211 (395)
                      .++++|++....  ...++.  .+..+++|++|+|+++.+.  .+... .+++|++|+|+++.+..-. ...+...++|+
T Consensus        29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCC
T ss_pred             CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCC
Confidence            378888876533  334443  3667999999999999876  23333 7999999999999983311 11245678888


Q ss_pred             EEeeecCCCCce--EeeCCCCCcceEEeccc
Q 016087          212 YLSLQLCPGLKN--LELSGLTKLNKFEVCDA  240 (395)
Q Consensus       212 ~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c  240 (395)
                      .|++++|.....  ..+..+++|+.|++.++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            888888753311  01223445555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.85  E-value=7.1e-05  Score=71.19  Aligned_cols=182  Identities=12%  Similarity=0.087  Sum_probs=108.0

Q ss_pred             CCccEEEEcceecc--CCCccCCCCCcEEEeeeeec---ChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcc
Q 016087          162 NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLN  233 (395)
Q Consensus       162 ~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~  233 (395)
                      .+|+.+.+...-..  ......|++|+.++|..+.+   ....+     .|..|+.+.+...  +..+   ....+++|+
T Consensus       157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~  229 (401)
T 4fdw_A          157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK  229 (401)
T ss_dssp             CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence            35777776652111  12223677888888876554   22222     1577888877643  2222   234567888


Q ss_pred             eEEecccc-ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccch----HHHHHHhccCCCccEEEeeC
Q 016087          234 KFEVCDAE-ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD----EWLCNQISKFPLLESLLIAG  308 (395)
Q Consensus       234 ~L~i~~c~-~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~~L~~L~L~~  308 (395)
                      .+.+...- .+..-.....+|+.+.+......--.-.+..|++|+.+.+.++....    ..-...+.+|++|+.+.|.+
T Consensus       230 ~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          230 TIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             EEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            88886532 33333344468888888554321112346778999999987764320    01123567889999998874


Q ss_pred             CCCCchhc----cCCCccCEEecccC-CCch-hhhhhCCCcceeEEeeeee
Q 016087          309 CDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       309 ~~~l~~~~----~~~~~Lk~L~L~~~-~~l~-~l~~~~~~L~~L~~~~~~~  353 (395)
                        .++.+.    ..|.+|+.+.|.+. ..+. ....+| +|+++.+.++..
T Consensus       310 --~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          310 --SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             --TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             --ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence              244333    34688999998542 2222 334668 899999988754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.80  E-value=4.1e-05  Score=63.81  Aligned_cols=109  Identities=20%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             cccccccccCCCCccEEEEcceecc-CC-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--e
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--E  225 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~  225 (395)
                      ...+|..+  .++|+.|+++++.+. .+ .. ..+++|++|+++++.+..- ....+..+++|+.|++++|......  .
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHH
Confidence            34445433  257888888887765 22 22 3678888888888877321 1123456788888888887533211  1


Q ss_pred             eCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC
Q 016087          226 LSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL  262 (395)
Q Consensus       226 i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~  262 (395)
                      +..+++|+.|+++++.  .+..-. ...++|++|+++++.
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            3456788888888774  222211 246889999998875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=6.4e-05  Score=69.40  Aligned_cols=96  Identities=11%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             CCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcccccccccccccc-eeEecccccchHHHHHHhccCCCccEE
Q 016087          229 LTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESL  304 (395)
Q Consensus       229 ~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L  304 (395)
                      +++|+.+++.++.  .+..-.+ .+++|+++.+..+...--.-.+..|.+|+ .+.+... ++. .-...+.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~-l~~-I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPAS-VTA-IEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTT-CCE-ECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEccc-ceE-EchhhhhCCccCCEE
Confidence            6799999999763  3333333 67899999998763211123477899999 9999763 221 113457889999999


Q ss_pred             EeeCCC--CCch-hccCCCccCEEe
Q 016087          305 LIAGCD--DLKS-INISSRSLKLLE  326 (395)
Q Consensus       305 ~L~~~~--~l~~-~~~~~~~Lk~L~  326 (395)
                      ++.+..  .+.. ....|++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            986532  2222 233567888775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.73  E-value=6.9e-06  Score=79.21  Aligned_cols=42  Identities=24%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             ccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087           14 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   55 (395)
Q Consensus        14 ~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw   55 (395)
                      +.-..|.++.||+||+.+||+||+.++++++++|||+|+++.
T Consensus         8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B            8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            344578899999999999999999999999999999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.63  E-value=0.00014  Score=61.25  Aligned_cols=60  Identities=13%  Similarity=0.047  Sum_probs=30.0

Q ss_pred             CCceeEEEEeCCCCcc-----cccccccccccceeEe--cccccchHH---HHHHhccCCCccEEEeeCC
Q 016087          250 AQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRF--ALTHIKDEW---LCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L--~~~~~~~~~---~~~l~~~~~~L~~L~L~~~  309 (395)
                      .++|++|+++++...+     +.-.+...++|++|+|  .++.+.+..   +...+...+.|++|+|+++
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3455555555544211     1112344456666666  556666544   3333444566666666554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.52  E-value=3.6e-05  Score=73.85  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             ccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087           14 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA   54 (395)
Q Consensus        14 ~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l   54 (395)
                      .....|.++.||+|++.+||+||+.+|++++++|||+|+++
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            33457999999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.51  E-value=1.9e-05  Score=75.63  Aligned_cols=38  Identities=29%  Similarity=0.507  Sum_probs=35.5

Q ss_pred             ccccccCCCCHH----HHHHHhcCCCcccchhhhhhhhhhhh
Q 016087           16 SHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKR   53 (395)
Q Consensus        16 ~~~d~is~LPde----il~~Ils~L~~~d~~r~~~vsrrWr~   53 (395)
                      ...|.++.||+|    |+.+||+||+.++++++++|||+|++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            457889999999    99999999999999999999999995

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.40  E-value=0.00019  Score=59.39  Aligned_cols=66  Identities=23%  Similarity=0.188  Sum_probs=37.9

Q ss_pred             cccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      ...+|..+  .++|+.|+|+++.+. . +.. ..+++|++|+|++|.+..- ....+..+++|+.|+++++.
T Consensus        21 l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc
Confidence            44555544  266777777777665 2 222 2677777777777776311 01123556667777776663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.37  E-value=0.00023  Score=59.22  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             cccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          151 RFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      ...+|..+.  ++|+.|+|+++.+. . +.. ..+++|++|+|+++.+..- ....+..+++|+.|++++|.
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence            445555443  67777777777665 2 222 2677777777777776321 01123456667777776663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.36  E-value=0.00071  Score=64.22  Aligned_cols=198  Identities=10%  Similarity=0.135  Sum_probs=122.8

Q ss_pred             CCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeec--ChHHHHHHHcCCCCccE
Q 016087          138 NVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~--~~~~l~~l~~~~p~Le~  212 (395)
                      +++.+.+..   ....++.. +.+|++|+.+.+.++.+.  ....+.+.+|+.+.|...-.  ..    ..+.+|++|+.
T Consensus       158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred             CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence            556555531   22333333 346999999999987655  34455678999999975422  22    23677999999


Q ss_pred             EeeecCCCCceE---eeCCCCCcceEEecccc-ccchhhc-cCCceeEEEEeCCCCc------ccccccccccccceeEe
Q 016087          213 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAE-ELQRLCI-IAQDVQEVSIQGPLPF------QCKFNLASCKFLKYLRF  281 (395)
Q Consensus       213 L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~-~l~~l~~-~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~L  281 (395)
                      +.+...  +..+   ...+ .+|+.+.+...- .+..-.. .+++|+.+.+.++...      --.-.+..|++|+.+.|
T Consensus       231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          231 IEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             EECCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             EecCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            999864  2222   2233 489999885432 3333333 6899999999876532      11234778999999999


Q ss_pred             cccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchhh----hhhCC-CcceeEEeee
Q 016087          282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAAS-SLSIFKYSGD  351 (395)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~l----~~~~~-~L~~L~~~~~  351 (395)
                      ..+ +.. .-...+.+|++|+.+.|...  ++.+    ...| +|+.+.+.+.. ++.+    ..+++ +++.|.+-..
T Consensus       308 ~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          308 PES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence            753 211 11235678999999999653  4333    2346 89999997542 2222    23343 5666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.18  E-value=0.00033  Score=58.86  Aligned_cols=118  Identities=12%  Similarity=0.024  Sum_probs=64.6

Q ss_pred             ccCCCCccEEEEcce-eccC------CCc-cCCCCCcEEEeeeeecChHHH---HHHHcCCCCccEEeeecCCCCceEee
Q 016087          158 ILCSNSIEILTLAGL-KLES------PRS-VKLSSLTKLFLMRVDATDLVL---QSLLIGCPLIEYLSLQLCPGLKNLEL  226 (395)
Q Consensus       158 l~~~~~L~~L~L~~~-~~~~------~~~-~~~~~Lk~L~L~~~~~~~~~l---~~l~~~~p~Le~L~l~~c~~~~~~~i  226 (395)
                      +..+++|++|+|++| .+..      ... ...++|++|+|++|.+++.+.   ...+..++.|++|+|++|..... - 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~-g-  109 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS-G-  109 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-H-
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-H-
Confidence            345677888888877 5541      111 145777788888777755543   33344566677777766642210 0 


Q ss_pred             CCCCCcceEEeccccccchhhccCCceeEEEE--eCCCCcc-----cccccccccccceeEecccccchHH
Q 016087          227 SGLTKLNKFEVCDAEELQRLCIIAQDVQEVSI--QGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEW  290 (395)
Q Consensus       227 ~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~  290 (395)
                                   ...+.......++|++|++  +++....     +.-.+...++|++|+|++|.+.+..
T Consensus       110 -------------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          110 -------------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             -------------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             -------------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence                         0001111123456677777  4444211     1112344678899999888876553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.07  E-value=0.0007  Score=55.93  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=31.7

Q ss_pred             CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++|++|+++++....+ +..+..+++|++|+|++|.++. .....+..+++|+.|+|+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCC
Confidence            5666666666653332 2335556666666666666542 11223455566666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.02  E-value=0.00093  Score=55.44  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=32.3

Q ss_pred             CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++|+.|+++++....+ +..++.+++|+.|+|++|.++. .....+..+++|+.|+|+++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC
Confidence            5667777766653332 2335566667777776666543 11223345566666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.38  E-value=0.0026  Score=58.76  Aligned_cols=88  Identities=16%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CcccccccccCCCCccEEEEcc-eecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe
Q 016087          150 PRFNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE  225 (395)
Q Consensus       150 ~~~~l~~~l~~~~~L~~L~L~~-~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~  225 (395)
                      ....+|. +..+.+|+.|+|++ +.+.  .+.. ..+++|+.|+|++|.+..-. ...+..+++|+.|+|++|... .+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeC
Confidence            4566787 77788899999986 7665  2222 37889999999998873211 123567888999999887533 111


Q ss_pred             ---eCCCCCcceEEecccc
Q 016087          226 ---LSGLTKLNKFEVCDAE  241 (395)
Q Consensus       226 ---i~~~~~L~~L~i~~c~  241 (395)
                         +..+ +|+.|.+.++.
T Consensus        97 ~~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           97 WKTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             STTTCSC-CCCEEECCSSC
T ss_pred             HHHcccC-CceEEEeeCCC
Confidence               1223 47888887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.01  E-value=0.011  Score=52.45  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             cCCceeEEEEeCCCCccccccccccc--ccceeEecccccch------HHHHHHhccCCCccEEE
Q 016087          249 IAQDVQEVSIQGPLPFQCKFNLASCK--FLKYLRFALTHIKD------EWLCNQISKFPLLESLL  305 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~  305 (395)
                      .+|+|+.|+++++..... ..+..+.  +|++|+|.+|.+..      .....++..+|+|+.|+
T Consensus       194 ~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          194 KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            556666666666553222 1122222  77777777776553      22334566777777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.59  E-value=0.025  Score=53.22  Aligned_cols=54  Identities=11%  Similarity=0.013  Sum_probs=25.9

Q ss_pred             hccCCCccEEEeeCCCCCchhc----cCCCccCEEecccC-CCch-hhhhhCCCcceeEEee
Q 016087          295 ISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSG  350 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~-~~l~-~l~~~~~~L~~L~~~~  350 (395)
                      +.+|++|+.+.|..  .++.+.    ..|.+|+.+.|... ..+. ....+|++|+++.+..
T Consensus       316 F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          316 FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence            44556666665532  122222    23456666666421 1222 2235567777766643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.57  E-value=0.0075  Score=53.59  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=34.8

Q ss_pred             cCCceeEEEEeCCCCccc---ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          249 IAQDVQEVSIQGPLPFQC---KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      ..|+|++|+++++....+   +..+..+++|+.|+|++|.+.+..-..-+..+ +|+.|.|.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc
Confidence            467777777777663322   22334677777777777776543211222223 66777766654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.48  E-value=0.02  Score=53.85  Aligned_cols=92  Identities=14%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCcc
Q 016087          249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSL  322 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~L  322 (395)
                      .+.+|+.+.+......--.-.+..|.+|+.++|...-  +.    ...+.+|.+|+.+.+...  ++.+    ...|++|
T Consensus       295 ~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIG----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL  368 (394)
T ss_dssp             TCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEEC----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccceechhhhcCCCCCCEEEeCCcccEEh----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence            5678888888654311112246778999999985431  22    235678999999988643  4333    3457899


Q ss_pred             CEEecccC-CCchhhhhhCCCccee
Q 016087          323 KLLEIYDC-LRLVEVKIAASSLSIF  346 (395)
Q Consensus       323 k~L~L~~~-~~l~~l~~~~~~L~~L  346 (395)
                      +.+.|.+. .....-..+|++|+++
T Consensus       369 ~~i~lp~~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKRLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred             CEEEECCCCEEhhheecCCCCCcEE
Confidence            99998643 2222334668887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.33  E-value=0.038  Score=50.79  Aligned_cols=73  Identities=14%  Similarity=0.068  Sum_probs=41.5

Q ss_pred             EEEEcce-ecc-CCCccCCCCCcEEEeee-eecChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcceEEecc
Q 016087          166 ILTLAGL-KLE-SPRSVKLSSLTKLFLMR-VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCD  239 (395)
Q Consensus       166 ~L~L~~~-~~~-~~~~~~~~~Lk~L~L~~-~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~  239 (395)
                      .++.++. .+. +|....+++|++|+|++ +.+..-. ...+.++++|+.|+|++|.. ..+   .+..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCC
Confidence            3455554 444 44433677888888885 7762210 12356678888888887742 222   123455666666665


Q ss_pred             c
Q 016087          240 A  240 (395)
Q Consensus       240 c  240 (395)
                      +
T Consensus        90 N   90 (347)
T 2ifg_A           90 N   90 (347)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.32  E-value=0.25  Score=46.25  Aligned_cols=120  Identities=13%  Similarity=0.105  Sum_probs=68.0

Q ss_pred             CCCCcceEEecccc-ccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccE
Q 016087          228 GLTKLNKFEVCDAE-ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLES  303 (395)
Q Consensus       228 ~~~~L~~L~i~~c~-~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~  303 (395)
                      .+.+|+.+.+.+.. .+..-.. .+++|+.+.+......--.-.+..|.+|+.+.|..+-  +.+    ..+.+|.+|++
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCE
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCE
Confidence            45677777775432 2222222 5788888888653321112246778999999996531  332    35678999999


Q ss_pred             EEeeC-CCCCch-hccCCCccCEEecccCCCchhhhhhCCCcceeEEeee
Q 016087          304 LLIAG-CDDLKS-INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD  351 (395)
Q Consensus       304 L~L~~-~~~l~~-~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~  351 (395)
                      +.|-. ...+.. ....|.+|+.+.+.+......-...|.+|+.+.+..+
T Consensus       339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred             EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence            99954 233322 2346789999999754322222356788888887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.44  E-value=0.3  Score=40.93  Aligned_cols=99  Identities=7%  Similarity=0.039  Sum_probs=51.1

Q ss_pred             hHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcc-----cccccc
Q 016087          197 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQ-----CKFNLA  271 (395)
Q Consensus       197 ~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~-----~~~~~~  271 (395)
                      ++.+..++...+.|++|++.++..+...-+.              .+......-..|+.|+++++...+     +.-.+.
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~--------------~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~   95 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIR--------------SLIEAACNSKHIEKFSLANTAISDSEARGLIELIE   95 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHH--------------HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHH--------------HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh
Confidence            4567778888888888888765222110000              000000122344444444443111     111123


Q ss_pred             cccccceeEecccccchHHHHHHhcc---CCCccEEEeeCC
Q 016087          272 SCKFLKYLRFALTHIKDEWLCNQISK---FPLLESLLIAGC  309 (395)
Q Consensus       272 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~  309 (395)
                      .-..|++|+|+.|.+.+.....+...   -..|++|+|+++
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            34678888888888777665554433   345777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.34  E-value=0.52  Score=44.01  Aligned_cols=98  Identities=14%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchhc----cCCCcc
Q 016087          249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSL  322 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~L  322 (395)
                      .+.+|+++.+......--...+..|++|+.+.+...-  +.+    ..+.+|++|+.+.|..  +++.+.    ..|.+|
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPE--GITQILDDAFAGCEQL  336 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCcccccCc----eeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence            5678888888654321112246678999999996432  322    3578899999999964  243333    357899


Q ss_pred             CEEeccc-CCCch-hhhhhCCCcceeEEeeee
Q 016087          323 KLLEIYD-CLRLV-EVKIAASSLSIFKYSGDV  352 (395)
Q Consensus       323 k~L~L~~-~~~l~-~l~~~~~~L~~L~~~~~~  352 (395)
                      +.+.|-+ ...+. ....+|.+|+++.+.++.
T Consensus       337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence            9999953 33443 345789999999998864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.12  E-value=0.75  Score=38.48  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=61.1

Q ss_pred             CCCCCcEEEeeee-ecChHHHHHH---HcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEE
Q 016087          181 KLSSLTKLFLMRV-DATDLVLQSL---LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEV  256 (395)
Q Consensus       181 ~~~~Lk~L~L~~~-~~~~~~l~~l---~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L  256 (395)
                      .-+.|++|+|+++ .+++.+...+   +.....|+.|+|.+|..-.. .              +..+......-..|++|
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~-g--------------a~alA~aL~~N~tL~~L  103 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS-E--------------ARGLIELIETSPSLRVL  103 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH-H--------------HTTHHHHHHHCSSCCEE
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH-H--------------HHHHHHHHhcCCccCeE
Confidence            4678999999986 7766654444   45567788888877743210 0              00111111123445555


Q ss_pred             EEeCCCCcc--cc---cccccccccceeEeccc---ccchH---HHHHHhccCCCccEEEeeC
Q 016087          257 SIQGPLPFQ--CK---FNLASCKFLKYLRFALT---HIKDE---WLCNQISKFPLLESLLIAG  308 (395)
Q Consensus       257 ~l~~~~~~~--~~---~~~~~~~~L~~L~L~~~---~~~~~---~~~~l~~~~~~L~~L~L~~  308 (395)
                      +++.+...+  ..   -.+..-..|+.|+|+++   .+.+.   .+...+..-+.|++|+++.
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            555544211  00   11233355777777643   34443   3445556667777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.21  E-value=1.8  Score=39.85  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC--CCCc-hhccCCCccCEE
Q 016087          249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC--DDLK-SINISSRSLKLL  325 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~--~~l~-~~~~~~~~Lk~L  325 (395)
                      .+.+|+.+.+......--...+..+.+|+.+.+...- .. .-...+.+|++|+.+.+.+.  ..+. .....|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~-i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KT-VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SE-ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCCccEeCccccceeehhccccccccc-ee-ccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            4556666666443211011234456667776664331 10 00224566777777777542  1221 122345677777


Q ss_pred             ecc-cCCCch-hhhhhCCCcceeEEe
Q 016087          326 EIY-DCLRLV-EVKIAASSLSIFKYS  349 (395)
Q Consensus       326 ~L~-~~~~l~-~l~~~~~~L~~L~~~  349 (395)
                      .|. +...+. ....+|.+|+++.+.
T Consensus       316 ~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          316 TLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             EcCccccEEHHHHhhCCCCCCEEEEC
Confidence            774 222333 223556777766653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.51  E-value=4.7  Score=37.01  Aligned_cols=13  Identities=8%  Similarity=0.064  Sum_probs=6.9

Q ss_pred             cCCCCccEEeeec
Q 016087          205 IGCPLIEYLSLQL  217 (395)
Q Consensus       205 ~~~p~Le~L~l~~  217 (395)
                      ..|..|+...+..
T Consensus       155 ~~~~~l~~~~~~~  167 (379)
T 4h09_A          155 YKAENLEKIEVSS  167 (379)
T ss_dssp             TTCTTCCEEEECT
T ss_pred             ccccccccccccc
Confidence            4455565555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	395
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-08
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.003

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 11  IMESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQ 70
           ++E     D IS LP+ +  ++LSFL     +Q     R W+       + +   +   +
Sbjct: 9   VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR---EKCKE 65

Query: 71  VFLEDSNDGSEAGKQKLREIFNYIKETLRIRHN 103
             +++          K   I +  K     +H 
Sbjct: 66  EGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 98

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 17  HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLED- 75
             D I++LP  I   I ++L F   + +  +S+ W +      +++  +  + ++ + + 
Sbjct: 2   KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNK------IIRKSTSLWKKLLISEN 55

Query: 76  --SNDGSEAGKQKLREIFNYIKETLRIRHNEMIR 107
             S  G  +   KL + +  + +  R+R + +  
Sbjct: 56  FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLEN 89

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 15 LSHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFD 64
          +   D I+ LP      I  +ILS+L         ++ + W R       W         
Sbjct: 5  MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64

Query: 65 SDFFHQVFLEDSNDGSEAGKQKLRE 89
          +D   +   E    G    K K  +
Sbjct: 65 TDSLWRGLAERRGWGQYLFKNKPPD 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	395
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.05
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.03
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.78
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.73
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.4
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-15  Score=134.61  Aligned_cols=183  Identities=16%  Similarity=0.248  Sum_probs=100.3

Q ss_pred             CCCCccEEEEcceeccC---C-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe----eCCCCC
Q 016087          160 CSNSIEILTLAGLKLES---P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE----LSGLTK  231 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~~---~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~----i~~~~~  231 (395)
                      ...+|++|++++|.+..   . ....+++|++|+|+++.+++..+.. +..+|+|++|++++|..++...    ..++++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34567777777766541   1 1225677777777777666655554 3457777777777776553211    124567


Q ss_pred             cceEEeccccccch------hhccCCceeEEEEeCCCC----cccccccccccccceeEecccc-cchHHHHHHhccCCC
Q 016087          232 LNKFEVCDAEELQR------LCIIAQDVQEVSIQGPLP----FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPL  300 (395)
Q Consensus       232 L~~L~i~~c~~l~~------l~~~~p~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~  300 (395)
                      |++|++++|..+..      +...+++|+.|.++++..    ..+......+++|++|++++|. +++..+. .+..+++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l~~~~~  201 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNY  201 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh-hhcccCc
Confidence            77777777653321      112346677777766431    1122223456667777776654 4444333 3455667


Q ss_pred             ccEEEeeCCCCCchhc----cCCCccCEEecccCCCc---hhhhhhCCCcc
Q 016087          301 LESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRL---VEVKIAASSLS  344 (395)
Q Consensus       301 L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~  344 (395)
                      |++|++++|..++...    ..+|+|+.|++.+|..-   ..+...+|+|+
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            7777777666554321    23466777766665322   23334455544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.9e-16  Score=141.41  Aligned_cols=186  Identities=19%  Similarity=0.272  Sum_probs=136.8

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc---CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE---SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~---~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~  212 (395)
                      .+++++++..+......+...+..|++|++|++++|.+.   ......+++|++|++++|.. ++.++..++.+||+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            478888886544334445555667999999999999764   11122689999999999765 88899999999999999


Q ss_pred             EeeecCCCCceEe----e-CCCCCcceEEecccc------ccchhhccCCceeEEEEeCCCC-c-cccccccccccccee
Q 016087          213 LSLQLCPGLKNLE----L-SGLTKLNKFEVCDAE------ELQRLCIIAQDVQEVSIQGPLP-F-QCKFNLASCKFLKYL  279 (395)
Q Consensus       213 L~l~~c~~~~~~~----i-~~~~~L~~L~i~~c~------~l~~l~~~~p~L~~L~l~~~~~-~-~~~~~~~~~~~L~~L  279 (395)
                      |++++|..+....    + ..+++|++|.+.+|.      .+..+...+|+|++|+++++.. . .....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9999997763221    1 235799999999874      2344445789999999998752 2 233456789999999


Q ss_pred             Eecccc-cchHHHHHHhccCCCccEEEeeCCCCC---chhccCCCccC
Q 016087          280 RFALTH-IKDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLK  323 (395)
Q Consensus       280 ~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l---~~~~~~~~~Lk  323 (395)
                      ++++|. +++..+.. +..+|+|+.|++.+|..-   ..+...+|+|+
T Consensus       206 ~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         206 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             ECTTCTTCCGGGGGG-GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             ECCCCCCCChHHHHH-HhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            999974 77776554 578999999999998322   23334566665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=2.5e-11  Score=104.66  Aligned_cols=180  Identities=18%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccc
Q 016087          162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  240 (395)
Q Consensus       162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c  240 (395)
                      .+|+.|.+.+|.+. ......+++|++|+++++.+.+-.   -+..+++|+.+.+.+|....-..+..+++|+.+.+.++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc---cccccccccccccccccccccccccccccccccccccc
Confidence            34444444444433 211224555555555555442100   03445555555555543221112334455555555554


Q ss_pred             cccchh-hccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc--c
Q 016087          241 EELQRL-CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--I  317 (395)
Q Consensus       241 ~~l~~l-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~  317 (395)
                      ...... ....+.+..+.++++.... ...+..+++|++|++.++.+.+..   .+..+++|+.|+++++. ++.+.  .
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~-l~~l~~l~  192 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNK-ISDISPLA  192 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-CCCCGGGG
T ss_pred             cccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccch---hhcccccceecccCCCc-cCCChhhc
Confidence            311111 1134555555554443211 122445666777777666554321   24566777777776653 33322  2


Q ss_pred             CCCccCEEecccCCCchhhh--hhCCCcceeEEee
Q 016087          318 SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG  350 (395)
Q Consensus       318 ~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~  350 (395)
                      .+++|++|+|+++ .+.++.  .++++|+.|++++
T Consensus       193 ~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            4577777777765 344332  5677777777753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.6e-11  Score=100.93  Aligned_cols=182  Identities=16%  Similarity=0.127  Sum_probs=135.2

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++.+++..++.  ..++ .+..+++|++|+++++.+. ......+++|+.++++++.++.  +. -+..++.|+.+.+
T Consensus        41 ~~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCC--Ccch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-ccccccccccccc
Confidence            4888888865443  3453 4678999999999998876 3334589999999999998732  11 2567999999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccch-hhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQR-LCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ  294 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~-l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  294 (395)
                      .+|.......+...+.++.+.+..+..... ....+++|++|.++++..... ..++.+++|+.|+++++.+++  + ..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~--l-~~  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD--I-SP  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC--C-GG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc-hhhcccccceecccCCCccCC--C-hh
Confidence            998765443455667899999988752221 124788999999998764332 236789999999999998764  2 23


Q ss_pred             hccCCCccEEEeeCCCCCchhc--cCCCccCEEeccc
Q 016087          295 ISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYD  329 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~  329 (395)
                      +..+++|++|+|++|. ++.+.  ..+++|+.|+|++
T Consensus       191 l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            6789999999999984 55543  4679999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.3e-10  Score=97.90  Aligned_cols=122  Identities=16%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchh-hccCCceeEEEEe
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRL-CIIAQDVQEVSIQ  259 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l-~~~~p~L~~L~l~  259 (395)
                      .+++|++|+++++.+++-.  . +.++++|+.|++.+|....-..+..+++|+.|.++++...... ...+++|+.+.++
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  136 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cCCCcCcCccccccccCcc--c-ccCCcccccccccccccccccccccccccccccccccccccccccchhhhhHHhhhh
Confidence            3445555555555442110  0 3445555555555543221112333444444444444311100 1134455555554


Q ss_pred             CCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          260 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      ++....++ .+..+++|+.|++.++.+++-   .-++++++|++|+++++
T Consensus       137 ~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l---~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         137 SNTISDIS-ALSGLTSLQQLNFSSNQVTDL---KPLANLTTLERLDISSN  182 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCCEEECCSS
T ss_pred             hhhhcccc-cccccccccccccccccccCC---ccccCCCCCCEEECCCC
Confidence            44321111 234455555555555544321   12344555555555554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=75.20  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087           21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   55 (395)
Q Consensus        21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw   55 (395)
                      ++.||+||+.+||+||+.+|++++++|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=2.4e-10  Score=96.33  Aligned_cols=157  Identities=19%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .++++|++..++.  ..+. .+..+++|++|++++|.+. .+....+++|++|+++++.+..-.   -+.+++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i--~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGI--KSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCC--CCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc---ccccccccccccc
Confidence            5888888755432  2333 3567899999999999876 333448999999999999883211   2678999999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEeccccccchhh--ccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLC--IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      .+|.......+..+++|+.|.++++. +..+.  ..+++|++|.+.++....+. .++.+++|++|+++++.+++   ..
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~---i~  188 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSD---IS  188 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC---CG
T ss_pred             cccccccccccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCC---Cc
Confidence            99876544456678899999999885 32322  36889999999998744433 36789999999999998875   23


Q ss_pred             HhccCCCccEE
Q 016087          294 QISKFPLLESL  304 (395)
Q Consensus       294 l~~~~~~L~~L  304 (395)
                      .+..+++|++|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            46788999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=8.3e-10  Score=102.15  Aligned_cols=185  Identities=16%  Similarity=0.171  Sum_probs=128.2

Q ss_pred             cccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceE
Q 016087          157 IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKF  235 (395)
Q Consensus       157 ~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L  235 (395)
                      ....++++..+.++++.+. .+....+++|++|+++++.+.+-   ..+..+++|+.|++.+|.......+..+++|+.|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc---chhhcccccchhccccCccCCCCcccccccCCEe
Confidence            3455778888888887665 33334678899999988887331   1256788899999988864443356667889999


Q ss_pred             Eecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc
Q 016087          236 EVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK  313 (395)
Q Consensus       236 ~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~  313 (395)
                      .++.+.  .+..+ ...+.++.+....+....+ ..+..+++++.|+++++.+++-.   -+..+|+|++|++++|. ++
T Consensus       269 ~l~~~~l~~~~~~-~~~~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~-l~  342 (384)
T d2omza2         269 KLGANQISNISPL-AGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNK-VS  342 (384)
T ss_dssp             ECCSSCCCCCGGG-TTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSC-CC
T ss_pred             eccCcccCCCCcc-ccccccccccccccccccc-cccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCC-CC
Confidence            888775  22222 2567778888877653322 23667889999999988876521   26778999999999884 33


Q ss_pred             hh--ccCCCccCEEecccCCCchhh--hhhCCCcceeEEeee
Q 016087          314 SI--NISSRSLKLLEIYDCLRLVEV--KIAASSLSIFKYSGD  351 (395)
Q Consensus       314 ~~--~~~~~~Lk~L~L~~~~~l~~l--~~~~~~L~~L~~~~~  351 (395)
                      .+  ...+++|++|+++++ .+..+  ..++++|+.|++++|
T Consensus       343 ~l~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 DVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCGGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             CChhHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            32  235789999999765 34433  367889999998876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=5e-10  Score=95.17  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=15.6

Q ss_pred             cccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087          272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  309 (395)
Q Consensus       272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  309 (395)
                      .+++|+++++.++.+++-  . -+..+++|++|+++++
T Consensus       154 ~l~~L~~l~l~~n~l~~i--~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDI--V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             GCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccc--c-cccCCCCCCEEECCCC
Confidence            344555555555444321  1 1334455555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=3.3e-10  Score=96.29  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=118.5

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeee
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  216 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~  216 (395)
                      .++++++..+..  ..++ .+..+++|++|+++++.+. .+....+++|+.|+++++.+++  +. -+..+++|+.|++.
T Consensus        47 ~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCC--CCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-cccccccccccccc
Confidence            788887754332  2333 3567999999999999876 3333478999999999999843  22 26779999999999


Q ss_pred             cCCCCceEeeCCCCCcceEEeccccccch--hhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHH
Q 016087          217 LCPGLKNLELSGLTKLNKFEVCDAEELQR--LCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ  294 (395)
Q Consensus       217 ~c~~~~~~~i~~~~~L~~L~i~~c~~l~~--l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  294 (395)
                      +|....-..+..+++|+.+.+..+. +..  ....+++|+.+.++++....+. .+..+++|++|++++|.+++  + ..
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~--l-~~  195 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--L-RA  195 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--C-GG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCC--C-hh
Confidence            9865433345567899999998875 222  2236789999999998754433 36789999999999998874  2 34


Q ss_pred             hccCCCccEEEeeC
Q 016087          295 ISKFPLLESLLIAG  308 (395)
Q Consensus       295 ~~~~~~L~~L~L~~  308 (395)
                      +..+++|+.|+|++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            67889999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.05  E-value=3.3e-10  Score=102.39  Aligned_cols=216  Identities=13%  Similarity=0.116  Sum_probs=132.2

Q ss_pred             CCcEEEEEecC-CCcccccccccCCCCccEEEEcce-ecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087          138 NVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGL-KLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  212 (395)
Q Consensus       138 ~l~~L~l~~~~-~~~~~l~~~l~~~~~L~~L~L~~~-~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~  212 (395)
                      +|++|+|.... .+...+|..+.++++|++|+|+++ .+.  .|... .+++|++|+|+++.+.... ...+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence            56677775533 234578888888999999999874 332  44433 7889999999998872211 123566888899


Q ss_pred             EeeecCCCCce--EeeCCCCCcceEEecccc---ccchhhccCCc-eeEEEEeCCCCcc-cccccccccccceeEecccc
Q 016087          213 LSLQLCPGLKN--LELSGLTKLNKFEVCDAE---ELQRLCIIAQD-VQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       213 L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~---~l~~l~~~~p~-L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~  285 (395)
                      +++..+.....  ..+..+++|+.+.+.++.   .++......++ ++.+.++++.... .+..+..+ .+..+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            88888743322  134567788888888775   22222223333 3666666654211 12222222 33356665554


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCchhc--cCCCccCEEecccCC---CchhhhhhCCCcceeEEeeeeeecc
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCL---RLVEVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~~~---~l~~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                      .... +......+++|+.+++.++.....+.  ...++|+.|+++++.   .+++-..++++|++|++++|.++.+
T Consensus       209 ~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            3322 23445677888888888764322222  235788899988664   3334456788999999999887644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.8e-10  Score=98.82  Aligned_cols=208  Identities=16%  Similarity=0.086  Sum_probs=141.8

Q ss_pred             EEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087          143 SLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  219 (395)
Q Consensus       143 ~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~  219 (395)
                      .+.+...+...+|..+.  +++++|+|+++.+.  .+.. ..+++|++|+++++.+..-. ......++.++.+.+..+.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-ccccccccccccccccccc
Confidence            33333334456665543  56899999998876  3333 37899999999998873211 1234567888888877665


Q ss_pred             CCceE---eeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHH
Q 016087          220 GLKNL---ELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLC  292 (395)
Q Consensus       220 ~~~~~---~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~  292 (395)
                      ....+   .+..+++|+.|.+..+.  .+... ....++|+.+.++++....++ ..+..+++|++|++.++.+.. ...
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cch
Confidence            54333   34567899999999886  22222 225778999999987744432 346678899999999988653 223


Q ss_pred             HHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087          293 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       293 ~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~  354 (395)
                      ..+.++++|+.+.+.++.....   ....+++|++|+++++.  .+. .....+++|+.|++++|++.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            4667889999999998753322   22345899999998654  222 44567999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.3e-09  Score=96.14  Aligned_cols=160  Identities=20%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             EEecCCCcccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCC
Q 016087          144 LELLGNPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPG  220 (395)
Q Consensus       144 l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~  220 (395)
                      +++.+.+...+|..+.  ++|++|+|+++.+. . +.. ..+++|++|+|+++.++.-  . ....+++|+.|++++|..
T Consensus        15 v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSSCC
T ss_pred             EEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--c-cccccccccccccccccc
Confidence            3444444456665542  46778888777665 2 222 2677777777777766321  1 124566677777766643


Q ss_pred             Cce-EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHh
Q 016087          221 LKN-LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQI  295 (395)
Q Consensus       221 ~~~-~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~  295 (395)
                      ... ..+..+++|+.|+++++.  .+... ....++++.|.+.++....++ ..+..+++|+.|+++++.++.- ....+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~  168 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLL  168 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTT
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Ccccc
Confidence            211 122344555666655543  11111 113345555555444322211 1123344555555555543321 11223


Q ss_pred             ccCCCccEEEeeCC
Q 016087          296 SKFPLLESLLIAGC  309 (395)
Q Consensus       296 ~~~~~L~~L~L~~~  309 (395)
                      ..+++|++|+|+++
T Consensus       169 ~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         169 NGLENLDTLLLQEN  182 (266)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             ccccccceeecccC
Confidence            44445555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=3.1e-09  Score=95.42  Aligned_cols=208  Identities=14%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             CCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          138 NVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      ++++|++...  ....+|. .+..+++|+.|+++++.+.  .+..+ .+++|++|++.++.+..-  .  ...++.|+.|
T Consensus        32 ~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--~--~~~~~~l~~L  105 (305)
T d1xkua_          32 DTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQEL  105 (305)
T ss_dssp             TCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCEE
T ss_pred             CCCEEECcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--c--cchhhhhhhh
Confidence            4555554332  2334443 2334555566655555443  12222 455555666555554210  0  1123445555


Q ss_pred             eeecCCCCc--eEeeCCCCCcceEEeccccc-----cchhhccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087          214 SLQLCPGLK--NLELSGLTKLNKFEVCDAEE-----LQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       214 ~l~~c~~~~--~~~i~~~~~L~~L~i~~c~~-----l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      .+..+....  .........+..+.+..+..     ........++|+.+.+.++....++  ...+++|++|++.++..
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTSCC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC--cccCCccCEEECCCCcC
Confidence            554432210  00011223344444443320     0011123456666666665422211  22356677777766654


Q ss_pred             chHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecccCCCchhh---hhhCCCcceeEEeeeeeec
Q 016087          287 KDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF  355 (395)
Q Consensus       287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~~~~l~~l---~~~~~~L~~L~~~~~~~~~  355 (395)
                      .... ...+..++.++.|.++++....   .....+++|++|+|+++ ++..+   ...+++|+.|++++|+++.
T Consensus       184 ~~~~-~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         184 TKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCC-hhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCccCc
Confidence            4322 2344566667777766653111   11223467777777655 23322   2456777777777766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=95.98  Aligned_cols=166  Identities=16%  Similarity=0.073  Sum_probs=92.5

Q ss_pred             CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-eeCCCCCcceEEecccc--ccchhhccCCceeEEEEe
Q 016087          183 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQ  259 (395)
Q Consensus       183 ~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~  259 (395)
                      ++|++|+|+++.++.-. ...+.++++|++|++++|.. ..+ ....+++|+.|+++++.  .........++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            46777777777662211 11245677777777777643 222 22456677777777664  222223356677777776


Q ss_pred             CCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCch
Q 016087          260 GPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLV  334 (395)
Q Consensus       260 ~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~  334 (395)
                      ++....+ ...+..+.+++.|++.++.+..- ....+..+++|+.|+++++. ++.+    ...+++|++|+|+++. +.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-L~  185 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LY  185 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             ccccceeecccccccccccccccccccccee-ccccccccccchhccccccc-ccccCccccccccccceeecccCC-Cc
Confidence            6653221 22344566777777776654421 12344556777777777653 2221    2235677777776543 33


Q ss_pred             hhh---hhCCCcceeEEeeeee
Q 016087          335 EVK---IAASSLSIFKYSGDVI  353 (395)
Q Consensus       335 ~l~---~~~~~L~~L~~~~~~~  353 (395)
                      .++   ...++|+.|+++||+.
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccChhHCCCCCCCEEEecCCCC
Confidence            332   3466677777777764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.93  E-value=7.6e-10  Score=99.89  Aligned_cols=213  Identities=10%  Similarity=0.029  Sum_probs=142.6

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  213 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L  213 (395)
                      .++++|+|..+..-...+|..+.++++|++|+|+++.+.  .+. ...+++|+.++++.+.+... +...+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            689999997544333478999999999999999998775  232 34789999999999887221 12236789999999


Q ss_pred             eeecCCCCceE--eeCCCCCc-ceEEecccc--ccchhhccCCceeEEEEeCCC-CcccccccccccccceeEecccccc
Q 016087          214 SLQLCPGLKNL--ELSGLTKL-NKFEVCDAE--ELQRLCIIAQDVQEVSIQGPL-PFQCKFNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       214 ~l~~c~~~~~~--~i~~~~~L-~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~  287 (395)
                      ++.++.....+  .+..+.++ +.+.+..+.  ....-.+...+...+.+..+. ....+..+..+++|+.+++.++.+.
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998654222  22234444 677777664  111112233344556666554 2224555677899999999888765


Q ss_pred             hHHHHHHhccCCCccEEEeeCCCCC---chhccCCCccCEEecccCCCchhhh--hhCCCcceeEEeeee
Q 016087          288 DEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSGDV  352 (395)
Q Consensus       288 ~~~~~~l~~~~~~L~~L~L~~~~~l---~~~~~~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~~~  352 (395)
                      ..  ...+..+++|+.|+++++.-.   ......+++|++|+|+++.--..++  .++++|+.+++++|+
T Consensus       235 ~~--~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         235 FD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cc--ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            43  224567899999999987633   2233456899999998753222344  356788888888886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=7.2e-09  Score=95.66  Aligned_cols=181  Identities=17%  Similarity=0.173  Sum_probs=130.1

Q ss_pred             CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccC-CCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++.+.+....  ...++. ...+++|+.|+++++.+.. +....+++|+.|++.++.+..-.   -+..+++|++|++
T Consensus       197 ~~~~~l~l~~n~--i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQ--ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSC--CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEEC
T ss_pred             cccceeeccCCc--cCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeec
Confidence            455666554322  222222 3457899999999998763 33348999999999999983311   1677999999999


Q ss_pred             ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087          216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  293 (395)
Q Consensus       216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (395)
                      +++.......+..++.++.+.+..+.  .+.. ...+++++.++++++....+. .+..+++|++|++++|.+++  +. 
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~--l~-  345 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD--VS-  345 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCC--CG-
T ss_pred             cCcccCCCCccccccccccccccccccccccc-cchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCC--Ch-
Confidence            98865433345667889999998875  2222 347889999999988744433 36789999999999998774  22 


Q ss_pred             HhccCCCccEEEeeCCCCCchh--ccCCCccCEEeccc
Q 016087          294 QISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYD  329 (395)
Q Consensus       294 l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~  329 (395)
                      .+..+++|+.|+++++. ++.+  ...+++|+.|+|++
T Consensus       346 ~l~~l~~L~~L~l~~N~-l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         346 SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             GGGGCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCC
T ss_pred             hHcCCCCCCEEECCCCc-CCCChhhccCCCCCEeeCCC
Confidence            46789999999999875 4333  24578999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=9.8e-09  Score=92.01  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=147.1

Q ss_pred             CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceeccCCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087          137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  215 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l  215 (395)
                      .+++++++.....  ..+ |..+..+++|+.|+++++.+..-....++.|+.|.+..+.+..-. ......++.+..+..
T Consensus        55 ~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~-~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          55 KNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred             ccccccccccccc--cccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhh-hhhhhcccccccccc
Confidence            5888888865443  344 445667999999999999876222335678999999998873211 223566788888888


Q ss_pred             ecCCCCce----EeeCCCCCcceEEeccccccchhh-ccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchH
Q 016087          216 QLCPGLKN----LELSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE  289 (395)
Q Consensus       216 ~~c~~~~~----~~i~~~~~L~~L~i~~c~~l~~l~-~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~  289 (395)
                      ..+.....    .....+++|+.+.+.++. +..+. ...++|++|++.++.... ....+..++.++.|+++++.+..-
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            77643311    123456789999998874 33332 246899999998876432 234567789999999999887653


Q ss_pred             HHHHHhccCCCccEEEeeCCCCCchh---ccCCCccCEEecccCCCchhh----------hhhCCCcceeEEeeeeee
Q 016087          290 WLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYDCLRLVEV----------KIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       290 ~~~~l~~~~~~L~~L~L~~~~~l~~~---~~~~~~Lk~L~L~~~~~l~~l----------~~~~~~L~~L~~~~~~~~  354 (395)
                      . ...+.++++|++|+|+++. ++.+   ...+++|++|+|+++. +..+          ....++|+.|+++||++.
T Consensus       211 ~-~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         211 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             c-cccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            2 3456789999999999984 4443   3356999999998753 3322          245688999999999863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=9e-09  Score=93.99  Aligned_cols=232  Identities=16%  Similarity=0.062  Sum_probs=148.9

Q ss_pred             hhHHHHHHHHHh-CCCcEEEEEecCC---CcccccccccCCCCccEEEEcceeccCC-------------CccCCCCCcE
Q 016087          125 PYIDQCIFYALG-CNVKELSLELLGN---PRFNLPEIILCSNSIEILTLAGLKLESP-------------RSVKLSSLTK  187 (395)
Q Consensus       125 ~~~~~~l~~~~~-~~l~~L~l~~~~~---~~~~l~~~l~~~~~L~~L~L~~~~~~~~-------------~~~~~~~Lk~  187 (395)
                      .++..++..... ..+++++|.....   +...+...+...++|+.|+++++.....             ....+++|++
T Consensus        18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            455555544433 6788877743211   1223444455678889998887643311             0115788999


Q ss_pred             EEeeeeecChH---HHHHHHcCCCCccEEeeecCCCCc--------eE-------eeCCCCCcceEEecccc----ccch
Q 016087          188 LFLMRVDATDL---VLQSLLIGCPLIEYLSLQLCPGLK--------NL-------ELSGLTKLNKFEVCDAE----ELQR  245 (395)
Q Consensus       188 L~L~~~~~~~~---~l~~l~~~~p~Le~L~l~~c~~~~--------~~-------~i~~~~~L~~L~i~~c~----~l~~  245 (395)
                      |+|++|.++..   .+...+..++.|+.|++.+|....        .+       .....+.|+.+.+..+.    ....
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            99999988443   455556778999999998885310        00       01234688888888764    1222


Q ss_pred             h---hccCCceeEEEEeCCCCcc------cccccccccccceeEecccccchHH---HHHHhccCCCccEEEeeCCCCC-
Q 016087          246 L---CIIAQDVQEVSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCDDL-  312 (395)
Q Consensus       246 l---~~~~p~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~l-  312 (395)
                      +   ....++|+.|.++++....      +...+..+++|++|++++|.+++..   +...+..+++|++|+|++|.-- 
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            2   2357889999998876322      1123567899999999999887654   4455678899999999998622 


Q ss_pred             ---chhc-----cCCCccCEEecccCCCch--------hhh-hhCCCcceeEEeeeeeecce
Q 016087          313 ---KSIN-----ISSRSLKLLEIYDCLRLV--------EVK-IAASSLSIFKYSGDVISFQL  357 (395)
Q Consensus       313 ---~~~~-----~~~~~Lk~L~L~~~~~l~--------~l~-~~~~~L~~L~~~~~~~~~~~  357 (395)
                         ..+.     ...+.|++|+|+++. +.        ... .++++|+.|+++|+.+..+.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence               1121     124679999998653 21        112 36889999999999875543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=6.4e-10  Score=82.45  Aligned_cols=38  Identities=26%  Similarity=0.511  Sum_probs=35.6

Q ss_pred             ccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087           18 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   55 (395)
Q Consensus        18 ~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw   55 (395)
                      .|.|+.||+||+.+||+||+++|++++++|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.73  E-value=4.3e-08  Score=88.99  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=17.6

Q ss_pred             CccCEEecccCCCchhhhhhCCCcceeEEeeeee
Q 016087          320 RSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI  353 (395)
Q Consensus       320 ~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~  353 (395)
                      ++|++|+|++| .+.+++...++|+.|++++|.+
T Consensus       284 ~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N~L  316 (353)
T d1jl5a_         284 PSLEELNVSNN-KLIELPALPPRLERLIASFNHL  316 (353)
T ss_dssp             TTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCC-ccCccccccCCCCEEECCCCcC
Confidence            45666666544 2334444455566666555544

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.4e-09  Score=79.64  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=37.5

Q ss_pred             ccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087           14 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA   54 (395)
Q Consensus        14 ~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l   54 (395)
                      ..-..|.|+.||+||+.+||+||+++|+++++.|||+|+.+
T Consensus        12 p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             chhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34457999999999999999999999999999999999975

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.68  E-value=2.7e-08  Score=90.73  Aligned_cols=203  Identities=17%  Similarity=0.146  Sum_probs=138.4

Q ss_pred             cccccccCCCCccEEEEcceecc------CC-CccCCCCCcEEEeeeeecC------hH---HHHHHHcCCCCccEEeee
Q 016087          153 NLPEIILCSNSIEILTLAGLKLE------SP-RSVKLSSLTKLFLMRVDAT------DL---VLQSLLIGCPLIEYLSLQ  216 (395)
Q Consensus       153 ~l~~~l~~~~~L~~L~L~~~~~~------~~-~~~~~~~Lk~L~L~~~~~~------~~---~l~~l~~~~p~Le~L~l~  216 (395)
                      .+...+....+|+.|+|+++.+.      .. .....++|+.|++.++..+      ..   .+...+..|++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44455666889999999998764      11 1236799999999987541      12   344456789999999999


Q ss_pred             cCCCCc----eE--eeCCCCCcceEEeccccc-----------cchh-----hccCCceeEEEEeCCCCcc-----cccc
Q 016087          217 LCPGLK----NL--ELSGLTKLNKFEVCDAEE-----------LQRL-----CIIAQDVQEVSIQGPLPFQ-----CKFN  269 (395)
Q Consensus       217 ~c~~~~----~~--~i~~~~~L~~L~i~~c~~-----------l~~l-----~~~~p~L~~L~l~~~~~~~-----~~~~  269 (395)
                      +|....    .+  .+...++|++|.+.+|.-           +..+     ....+.|+.+.++++....     +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            985321    11  123457999999998851           1111     1256789999998865221     1122


Q ss_pred             cccccccceeEecccccchHHH----HHHhccCCCccEEEeeCCCCCc--------hhccCCCccCEEecccCCC----c
Q 016087          270 LASCKFLKYLRFALTHIKDEWL----CNQISKFPLLESLLIAGCDDLK--------SINISSRSLKLLEIYDCLR----L  333 (395)
Q Consensus       270 ~~~~~~L~~L~L~~~~~~~~~~----~~l~~~~~~L~~L~L~~~~~l~--------~~~~~~~~Lk~L~L~~~~~----l  333 (395)
                      +..+++|+.|++..+.+.+..+    ...+..+++|+.|+++++. +.        .....+++|++|+|++|.-    .
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhh
Confidence            4567899999999999887643    3446778999999999875 32        2234579999999998751    1


Q ss_pred             hhhh---h--hCCCcceeEEeeeeeecc
Q 016087          334 VEVK---I--AASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       334 ~~l~---~--~~~~L~~L~~~~~~~~~~  356 (395)
                      ..+.   .  ..+.|++|++++|.+..+
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChH
Confidence            1222   2  246799999999987554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.8e-08  Score=81.53  Aligned_cols=123  Identities=17%  Similarity=0.071  Sum_probs=58.5

Q ss_pred             CCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087          160 CSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  237 (395)
Q Consensus       160 ~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i  237 (395)
                      ++.+|+.|+|+++.+. .+.. ..+++|++|+|++|.+..-  . -+..+|+|++|++++|...                
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~-~~~~l~~L~~L~ls~N~i~----------------   76 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRIC----------------   76 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCC----------------
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--C-CcccCcchhhhhccccccc----------------
Confidence            4556667777766655 2222 2455666666666554210  0 0233444444444444211                


Q ss_pred             ccccccch-hhccCCceeEEEEeCCCCcccc--cccccccccceeEecccccchHH--HHHHhccCCCccEEE
Q 016087          238 CDAEELQR-LCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEW--LCNQISKFPLLESLL  305 (395)
Q Consensus       238 ~~c~~l~~-l~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~  305 (395)
                          .+.. +...+|+|+.|+++++....+.  ..+..+++|++|++.+|.++...  ...++..+|+|+.|+
T Consensus        77 ----~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          77 ----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ----EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ----CCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                1111 1124556666666655432221  13455666777777666543321  122445566666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.8e-08  Score=85.10  Aligned_cols=189  Identities=15%  Similarity=0.103  Sum_probs=124.2

Q ss_pred             CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCcc
Q 016087          137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIE  211 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le  211 (395)
                      .++++|+|+.  .....+|. .+.++++|++|+++++.+.  .+ ....++.++.+....... ..- -...+.++++|+
T Consensus        32 ~~~~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEECcC--CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence            4677777744  23445565 3557889999999987765  22 223677888887654433 111 122366789999


Q ss_pred             EEeeecCCCC--ceEeeCCCCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCccc-ccccccccccceeEecccc
Q 016087          212 YLSLQLCPGL--KNLELSGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH  285 (395)
Q Consensus       212 ~L~l~~c~~~--~~~~i~~~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~  285 (395)
                      +|++.++...  ........++|+.+++.++.  .+..-.+ ..++|+.|+++++....+ ...+..+++|+.++++++.
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            9999988542  11123345788999998874  2222222 567899999988764332 2346678999999999888


Q ss_pred             cchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEeccc
Q 016087          286 IKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYD  329 (395)
Q Consensus       286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~  329 (395)
                      ++.- ....+..+++|+.|+++++.-..   .....+++|++|+|++
T Consensus       189 l~~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         189 VAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cccc-ChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            6642 24457888999999998875332   2234678899999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8e-07  Score=83.15  Aligned_cols=81  Identities=17%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             cccceeEecccccchHH---HHHHhccCCCccEEEeeCCCCCch-----h----ccCCCccCEEecccCCCch-------
Q 016087          274 KFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCDDLKS-----I----NISSRSLKLLEIYDCLRLV-------  334 (395)
Q Consensus       274 ~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~l~~-----~----~~~~~~Lk~L~L~~~~~l~-------  334 (395)
                      ..|+.+++..+.+++..   +..++..+++|++|+|+++. +..     +    ....+.|++|+|++|. +.       
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l  389 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL  389 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHH
Confidence            46777777777665543   33344566788888888764 321     1    1234678888888774 32       


Q ss_pred             -hhhhhCCCcceeEEeeeeeecc
Q 016087          335 -EVKIAASSLSIFKYSGDVISFQ  356 (395)
Q Consensus       335 -~l~~~~~~L~~L~~~~~~~~~~  356 (395)
                       +....+++|++|++++|+++.+
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHhcCCCCCEEECCCCcCCHH
Confidence             2234578899999988887543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.1e-07  Score=80.07  Aligned_cols=88  Identities=13%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             ccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe---
Q 016087          152 FNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---  225 (395)
Q Consensus       152 ~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---  225 (395)
                      ..+|..+.  +++++|+++++.+.  .+.. .++++|++|+++++.+....-...+.+++.++++.+..+.......   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            45554442  46777777776654  2223 2577777777777765211001123456777777776654443322   


Q ss_pred             eCCCCCcceEEecccc
Q 016087          226 LSGLTKLNKFEVCDAE  241 (395)
Q Consensus       226 i~~~~~L~~L~i~~c~  241 (395)
                      +.++++|++|.+.++.
T Consensus        99 ~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECCTTCCEEEEESCC
T ss_pred             ccccccccccccchhh
Confidence            2345677777776653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.46  E-value=1.2e-06  Score=79.11  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=45.8

Q ss_pred             hccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeee
Q 016087          295 ISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  354 (395)
Q Consensus       295 ~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~  354 (395)
                      ...+++|++|+|++|. +..+....++|++|+|+++ .+.+++..+++|++|++++|++.
T Consensus       280 ~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cccCCCCCEEECCCCc-cCccccccCCCCEEECCCC-cCCccccccCCCCEEECcCCcCC
Confidence            3456899999999885 5556556789999999866 46677777789999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=1.1e-07  Score=73.02  Aligned_cols=117  Identities=20%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccccc
Q 016087          165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEEL  243 (395)
Q Consensus       165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l  243 (395)
                      +.|+|+++.+. .+....+++|++|+++++.+..  +...+..+++|+.|+++++....-..+.                
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~----------------   62 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVA----------------   62 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGT----------------
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccc----------------
Confidence            35666666655 3333356677777777776622  1112455666777777666321100111                


Q ss_pred             chhhccCCceeEEEEeCCCCcccc--cccccccccceeEecccccchH--HHHHHhccCCCccEE
Q 016087          244 QRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESL  304 (395)
Q Consensus       244 ~~l~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L  304 (395)
                           .+|+|+.|+++++....++  ..+..+++|+.|+++++.+...  ....+...+|+|+.+
T Consensus        63 -----~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          63 -----NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -----TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -----cccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                 3455555555555422221  2355677777777777765431  123345557777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.1e-07  Score=76.67  Aligned_cols=79  Identities=14%  Similarity=0.097  Sum_probs=57.4

Q ss_pred             CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeee
Q 016087          138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  216 (395)
Q Consensus       138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~  216 (395)
                      .+++|+|.  +.....++.....+++|++|+|+++.+. .+....+++|++|++++|.+..-. ..++..+|+|+.|++.
T Consensus        19 ~lr~L~L~--~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLR--GYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECT--TSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECC
T ss_pred             cCcEEECC--CCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-ccccccccccccceec
Confidence            56677664  3444556655567899999999999876 444457999999999999983211 1234568999999999


Q ss_pred             cCC
Q 016087          217 LCP  219 (395)
Q Consensus       217 ~c~  219 (395)
                      +|.
T Consensus        96 ~N~   98 (162)
T d1a9na_          96 NNS   98 (162)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            885

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.4e-07  Score=77.94  Aligned_cols=170  Identities=9%  Similarity=0.004  Sum_probs=97.1

Q ss_pred             CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc---CCCc-cCCCCCcEEEeeeee-cChHHHHHHHcCCCCc
Q 016087          137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLI  210 (395)
Q Consensus       137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~---~~~~-~~~~~Lk~L~L~~~~-~~~~~l~~l~~~~p~L  210 (395)
                      +++++|++....  ...+|.. +.++++|++|+++++.+.   .+.. ..++++++|.+..+. .... ....+..+++|
T Consensus        29 ~~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEECcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            478888886533  3456654 457899999999998654   2222 378999999887643 2111 11246789999


Q ss_pred             cEEeeecCCCCceEeeCCCCCcceEEecccc--ccchhh---c--cCCceeEEEEeCCCCcccccccccccccceeE-ec
Q 016087          211 EYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC---I--IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR-FA  282 (395)
Q Consensus       211 e~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~---~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~-L~  282 (395)
                      +.|.+.++..........+.+++.+.+....  .+..+.   .  ..+.++.+.+.++....+........+++.+. +.
T Consensus       106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~  185 (242)
T d1xwdc1         106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD  185 (242)
T ss_dssp             CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTT
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccc
Confidence            9999999854322222334455555443222  222221   1  23467777777665333332222334444443 34


Q ss_pred             ccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          283 LTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       283 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      ++.++. .....+.++++|+.|+|++++
T Consensus       186 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         186 NNNLEE-LPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CTTCCC-CCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccc-ccHHHhcCCCCCCEEECCCCc
Confidence            444432 112345677888888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=8.9e-09  Score=86.31  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087          181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  260 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~  260 (395)
                      .+++|++|+|+++.+..  +.. +..+++|+.|++++|..      .              .+..+....++|+.|++++
T Consensus        46 ~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i------~--------------~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          46 TLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI------K--------------KIENLDAVADTLEELWISY  102 (198)
T ss_dssp             HTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE------C--------------SCSSHHHHHHHCCEEECSE
T ss_pred             cccccceeECcccCCCC--ccc-ccCCccccChhhccccc------c--------------ccccccccccccccccccc
Confidence            46677777777776622  111 33456666666665521      1              1122222345677777777


Q ss_pred             CCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          261 PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      +....+. .+..+++|+.|++++|.+++-.....+..+++|+.|++++++
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            6533322 255678888999988887654334456788888888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.40  E-value=7.6e-09  Score=86.72  Aligned_cols=144  Identities=14%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             CcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeec
Q 016087          139 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQL  217 (395)
Q Consensus       139 l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~  217 (395)
                      ++.+++.........++..+..+++|++|+|+++.+. .+....+++|++|+|++|.+..  +..+...++.|+.|++.+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccc
Confidence            3444443322234456666778899999999998877 3333378999999999998832  112233356788888877


Q ss_pred             CCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccc--cccccccccceeEecccccchH------
Q 016087          218 CPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDE------  289 (395)
Q Consensus       218 c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~------  289 (395)
                      |....-..+.                     .+++|+.|+++++....+.  ..+..+++|+.|++++|.+...      
T Consensus       103 N~i~~l~~~~---------------------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  161 (198)
T d1m9la_         103 NQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             EECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTT
T ss_pred             cccccccccc---------------------ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccc
Confidence            6321100111                     3345555555544322221  1245566666666666543221      


Q ss_pred             ---HHHHHhccCCCccEEE
Q 016087          290 ---WLCNQISKFPLLESLL  305 (395)
Q Consensus       290 ---~~~~l~~~~~~L~~L~  305 (395)
                         ....++..+|+|+.|+
T Consensus       162 ~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         162 TSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHHHCSSCCEES
T ss_pred             hhhHHHHHHHHCCCcCEeC
Confidence               1122356677777764

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.6e-08  Score=75.92  Aligned_cols=38  Identities=29%  Similarity=0.548  Sum_probs=34.8

Q ss_pred             cccccCCCC----HHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087           17 HIDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKRA   54 (395)
Q Consensus        17 ~~d~is~LP----deil~~Ils~L~~~d~~r~~~vsrrWr~l   54 (395)
                      ..|.++.||    |||+.+||+||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            368889998    59999999999999999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=7e-07  Score=68.35  Aligned_cols=58  Identities=12%  Similarity=0.090  Sum_probs=22.6

Q ss_pred             CCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeC
Q 016087          250 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG  308 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  308 (395)
                      +++|+.|+++++....++ .+..+++|++|+++++.+..-.....+..+++|+.|++++
T Consensus        42 l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          42 LRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             hhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            344444444443322221 1334444444444444433211112233444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.81  E-value=9.3e-06  Score=66.87  Aligned_cols=70  Identities=26%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             ecCCCcccccccccCCCCccEEEEcceecc--C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087          146 LLGNPRFNLPEIILCSNSIEILTLAGLKLE--S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       146 ~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c  218 (395)
                      +.+.+...+|..+.  +++++|+|+++.+.  . ... ..+++|++|+|+++.+..-. ...+...+.|++|+++++
T Consensus        15 Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          15 CTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             CTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             EeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccc
Confidence            33444456665542  56777777777663  2 222 25677777777776652111 122445566666666666

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.8e-05  Score=72.17  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             CCCCCcEEEeeeeecChH----HHHHHHcCCCCccEEeeecCCCCceE------eeCCCCCcceEEecccc----ccchh
Q 016087          181 KLSSLTKLFLMRVDATDL----VLQSLLIGCPLIEYLSLQLCPGLKNL------ELSGLTKLNKFEVCDAE----ELQRL  246 (395)
Q Consensus       181 ~~~~Lk~L~L~~~~~~~~----~l~~l~~~~p~Le~L~l~~c~~~~~~------~i~~~~~L~~L~i~~c~----~l~~l  246 (395)
                      ..+.++.+.+.++...+.    ........++.|+.+++.+|......      .+...+.++.+.++++.    .+..+
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            345555666655555222    22223334555666666555322100      01123455555555543    11111


Q ss_pred             ----hccCCceeEEEEeCCCCccc-----ccccccccccceeEecccccchHHHHHHh----ccCCCccEEEeeCCCCCc
Q 016087          247 ----CIIAQDVQEVSIQGPLPFQC-----KFNLASCKFLKYLRFALTHIKDEWLCNQI----SKFPLLESLLIAGCDDLK  313 (395)
Q Consensus       247 ----~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~~l~  313 (395)
                          ....+.|+.+.++++.....     .-.+...++|++|+|+++.+++..+..+.    ...+.|++|+|++|. ++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~  382 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VS  382 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CC
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CC
Confidence                11234556666555441110     00122344566666666665554433332    233456666666653 32


Q ss_pred             h-----h---ccCCCccCEEecccCC-C---chhhh----hhCCCcceeEEeeeeee
Q 016087          314 S-----I---NISSRSLKLLEIYDCL-R---LVEVK----IAASSLSIFKYSGDVIS  354 (395)
Q Consensus       314 ~-----~---~~~~~~Lk~L~L~~~~-~---l~~l~----~~~~~L~~L~~~~~~~~  354 (395)
                      .     +   ...+++|++|+|++.. .   ...+.    .+...|+.|.+.++.+.
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2     1   1124566666665432 0   11111    12335666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.74  E-value=2.7e-05  Score=63.99  Aligned_cols=123  Identities=13%  Similarity=0.118  Sum_probs=80.5

Q ss_pred             ccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEeccc
Q 016087          164 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDA  240 (395)
Q Consensus       164 L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c  240 (395)
                      .+.++.++..+. +|... .+++++|+|+++.++.......+...++|+.|++.++.....  .....+++|+.|+++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345566655554 44333 368999999999884322223356788999999988754321  12345678999999888


Q ss_pred             c--ccchhh-ccCCceeEEEEeCCCCcccc-cccccccccceeEecccccc
Q 016087          241 E--ELQRLC-IIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIK  287 (395)
Q Consensus       241 ~--~l~~l~-~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~  287 (395)
                      .  .+..-. ...++|+.|+++++....++ ..+..+++|++|+|+++.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5  222222 25788999999888744433 24677889999999887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=0.00049  Score=54.75  Aligned_cols=20  Identities=5%  Similarity=-0.014  Sum_probs=10.3

Q ss_pred             HHHHHHcCCCCccEEeeecC
Q 016087          199 VLQSLLIGCPLIEYLSLQLC  218 (395)
Q Consensus       199 ~l~~l~~~~p~Le~L~l~~c  218 (395)
                      .+..+..++|.|++|+|+++
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~   25 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNM   25 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHHhCCCCCcEEEeCCC
Confidence            34444555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.001  Score=52.17  Aligned_cols=12  Identities=33%  Similarity=0.445  Sum_probs=6.7

Q ss_pred             CcceeEEeeeee
Q 016087          342 SLSIFKYSGDVI  353 (395)
Q Consensus       342 ~L~~L~~~~~~~  353 (395)
                      .|+.|++++|++
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            455666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.0018  Score=51.11  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=29.8

Q ss_pred             CCceeEEEEeCCCCcc-----cccccccccccceeEec--ccccchHH---HHHHhccCCCccEEEeeC
Q 016087          250 AQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFA--LTHIKDEW---LCNQISKFPLLESLLIAG  308 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~--~~~~~~~~---~~~l~~~~~~L~~L~L~~  308 (395)
                      .++++.+.+.++...+     +.-.+...++|+.++|.  .+.+.+..   +...+..+++|++|++..
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            4555555555544111     11124445666665553  34455533   334445667777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0034  Score=49.02  Aligned_cols=37  Identities=5%  Similarity=-0.036  Sum_probs=16.4

Q ss_pred             CCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087          250 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  286 (395)
Q Consensus       250 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (395)
                      .++|++|+++++....++...-...+|++|+|++|.+
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            4455555555544322222222223456666655543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.50  E-value=0.0019  Score=51.21  Aligned_cols=81  Identities=17%  Similarity=0.097  Sum_probs=41.8

Q ss_pred             cccccccceeEecccccchHHH---HHHhccCCCccEEEeeCCCCCch-----h---ccCCCccCEEecccCC--C----
Q 016087          270 LASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLIAGCDDLKS-----I---NISSRSLKLLEIYDCL--R----  332 (395)
Q Consensus       270 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~l~~-----~---~~~~~~Lk~L~L~~~~--~----  332 (395)
                      +...++|++|+|+++.+.+...   ...+...+.|++|+|++|. +..     +   ....+.|++|+|+++.  .    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            3344566666666666555432   2334455666666666653 221     1   1123566667665432  1    


Q ss_pred             ----chhhhhhCCCcceeEEeee
Q 016087          333 ----LVEVKIAASSLSIFKYSGD  351 (395)
Q Consensus       333 ----l~~l~~~~~~L~~L~~~~~  351 (395)
                          +.......+.|+.|.++.+
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCC
Confidence                1223345677777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.91  E-value=0.0039  Score=49.09  Aligned_cols=104  Identities=19%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             cCCceeEEEEeCCCCc---c---cccccccccccceeEecccccchHHHH---HHhccCCCccEEEeeCCCCCc----hh
Q 016087          249 IAQDVQEVSIQGPLPF---Q---CKFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK----SI  315 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~---~---~~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~l~----~~  315 (395)
                      ..|+|++|.+++....   .   +...+...++|++|+++++.+++....   ..+...+.++.+++.++..-.    .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666543210   0   111234456777777777776655433   334556677777777654221    11


Q ss_pred             ---ccCCCccCEEecccCC-Cc--------hhhhhhCCCcceeEEeeee
Q 016087          316 ---NISSRSLKLLEIYDCL-RL--------VEVKIAASSLSIFKYSGDV  352 (395)
Q Consensus       316 ---~~~~~~Lk~L~L~~~~-~l--------~~l~~~~~~L~~L~~~~~~  352 (395)
                         ....++|+.++|+.+. .+        .+....++.|++|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               1234667776665322 11        1333567888888876553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0039  Score=48.97  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=51.1

Q ss_pred             HHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccccc-ccccccccc
Q 016087          199 VLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLK  277 (395)
Q Consensus       199 ~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~  277 (395)
                      .+..+...+|.|++|++++|.... +  .              .+......+|+|+.|+++++....+.. ..-...+|+
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~-l--~--------------~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYR-L--D--------------DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCC-C--S--------------GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccC-C--c--------------hhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            344455678999999998884321 0  0              111122245666777776665333221 122335677


Q ss_pred             eeEecccccch------HHHHHHhccCCCccEEE
Q 016087          278 YLRFALTHIKD------EWLCNQISKFPLLESLL  305 (395)
Q Consensus       278 ~L~L~~~~~~~------~~~~~l~~~~~~L~~L~  305 (395)
                      .|++.++.+..      .....++..+|+|+.|+
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            88887776542      23445667788888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0033  Score=49.39  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             cCCceeEEEEeCCCCccc---ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087          249 IAQDVQEVSIQGPLPFQC---KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  310 (395)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  310 (395)
                      .+|+|++|+++++....+   ...+..+++|+.|+|++|.+.+-.-...+ ...+|+.|++.+++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-TTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh-hccccceeecCCCC
Confidence            467777777777663322   22244567777777777776543222222 23456777776654