Citrus Sinensis ID: 016090

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MEDNEVETSEWVGSPGLTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVSNAGSPSALTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEEKFEETNSVEPPASVPPVSSSDSNENQVKEIINVDRAGNETEAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDACTPTPQTPPSRITEVPSTDFNPIHR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHEEEEEHHHHHcccHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccEEEEEEcccccEEEEccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHccccccccEEEEEEcccccEEEccccHHHccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccEEEEccccccccHcccccccccccccccccHHHcccccccccccccccccccccccccccccc
mednevetsewvgspgltnisngpfhtpvsakggrvnnrskgikgnrstpqtpvsnagspsaltpagscrydsslglLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRirwkgldnsipgevdadASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIaikapqgttlevpdpdeavdypqrRYRIILRSTMGPIDVYLVSRFEekfeetnsveppasvppvsssdsnenqVKEIINvdragnetEAQAQQAHQIYSDLNSSQEVVGGMMkivpsdvdndadywllsdadvsitdmwktdsgaewdgvnmlhaefgmsdactptpqtppsritevpstdfnpihr
mednevetsewvgspgltnisngpfhtpvsakggrvnnrskgikgnrstpqtpvsnagspsaltpAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRelienennrkwLFVTEEDIKNLHCFQNQTLIAIKapqgttlevpdpdeavdyPQRRYRIILRSTMGPIDVYLVSRFEEKFeetnsveppasvppvsssdsnenQVKEIINVDRAGNETEAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDACTptpqtppsritevpstdfnpihr
MEDNEVETSEWVGSPGLTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVSNAGSPSALTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTrelrerlrelienennrKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEEKFEETNsveppasvppvsssdsNENQVKEIINVDRAGNETEAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDACTPTPQTPPSRITEVPSTDFNPIHR
********************************************************************CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGL*******************************************IENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFE************************************************************VVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFG*****************************
***************************************************************************GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIP****************************R**********ENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTL************QRRYRIILRSTMGPIDVYL************************************************************************IVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFG*****************************
**********WVGSPGLTNISNGPFHTPVSAKGGRVNNRSKGI********************TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEEK***********************NQVKEIINVDRAGN*********HQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDACT*********ITEVPSTDFNPIHR
********************************************************************CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRF*************************************************************VVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDA*************************
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MEDNEVETSEWVGSPGLTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVSNAGSPSALTPAGSCRYDSSLGLLTKKFINLxxxxxxxxxxxxxxxxxxxxxKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRxxxxxxxxxxxxxxxxxxxxxxKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEEKFEETNSVEPPASVPPVSSSDSNENQVKEIINVDRAGNETEAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEFGMSDACTPTPQTPPSRITEVPSTDFNPIHR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
Q9FNY0485 Transcription factor E2FA yes no 0.886 0.721 0.648 1e-125
Q9FV71469 Transcription factor E2FB no no 0.908 0.765 0.556 1e-104
Q9FV70396 Transcription factor E2FC no no 0.681 0.679 0.466 1e-67
Q61502335 Transcription factor E2F5 yes no 0.488 0.576 0.484 4e-43
O35261457 Transcription factor E2F3 no no 0.584 0.505 0.426 3e-42
O00716465 Transcription factor E2F3 yes no 0.574 0.488 0.429 5e-42
Q62814300 Transcription factor E2F5 no no 0.465 0.613 0.486 2e-40
Q15329346 Transcription factor E2F5 no no 0.460 0.526 0.486 6e-40
Q16254413 Transcription factor E2F4 no no 0.453 0.433 0.497 2e-39
Q8R0K9410 Transcription factor E2F4 no no 0.453 0.436 0.497 5e-39
>sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1 Back     alignment and function desciption
 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/370 (64%), Positives = 280/370 (75%), Gaps = 20/370 (5%)

Query: 14  SPGLTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVS-NAGSPSALTPAGSCRYD 72
           S G TNI + P  TP   KGGRVN +SK  KGN+STPQTP+S NAGSP  LTP+GSCRYD
Sbjct: 113 SSGFTNIPSSPCQTP--RKGGRVNIKSKA-KGNKSTPQTPISTNAGSPITLTPSGSCRYD 169

Query: 73  SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132
           SSLGLLTKKF+NLIK A+DG+LDLNKAAETLEVQKRRIYDITNVLEGI LIEK  KNRI 
Sbjct: 170 SSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRIL 229

Query: 133 WKGLDNSIPGEVDADASILQ--ADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLF 190
           WKG+D + PG+ DAD S+LQ  A+I+NL++EE  +D Q R+  ERLR+L ENE N+KWLF
Sbjct: 230 WKGVD-ACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLF 288

Query: 191 VTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLV 250
           VTEEDIK+L  FQNQTLIA+KAP GTTLEVPDPDEA D+PQRRYRIILRSTMGPIDVYLV
Sbjct: 289 VTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLV 348

Query: 251 SRFEEKFEETN--SVEPPASVPPVSSSDSNENQVKEIINVDRAGNETEAQAQQAHQI--Y 306
           S FE KFE+TN     PPA +P  SSS S  +   E + VD       +      Q    
Sbjct: 349 SEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDT 408

Query: 307 SDLNSSQEVVGGMMKIVPSDVDND-ADYWLLSDADVSITDMWKTDSGAEWDGVNMLHAEF 365
           SDLN  QE VGGM+KI PSDV+ND +DYWLLS+A++S+TD+WKTDSG +WD        +
Sbjct: 409 SDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIWKTDSGIDWD--------Y 460

Query: 366 GMSDACTPTP 375
           G++D  TP P
Sbjct: 461 GIADVSTPPP 470
Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FV71|E2FB_ARATH Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1 Back     alignment and function description
>sp|Q9FV70|E2FC_ARATH Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1 Back     alignment and function description
>sp|Q61502|E2F5_MOUSE Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=2 Back     alignment and function description
>sp|O35261|E2F3_MOUSE Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2 Back     alignment and function description
>sp|O00716|E2F3_HUMAN Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1 Back     alignment and function description
>sp|Q62814|E2F5_RAT Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5 PE=2 SV=1 Back     alignment and function description
>sp|Q15329|E2F5_HUMAN Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1 Back     alignment and function description
>sp|Q16254|E2F4_HUMAN Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2 Back     alignment and function description
>sp|Q8R0K9|E2F4_MOUSE Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
297740186466 unnamed protein product [Vitis vinifera] 0.992 0.841 0.736 1e-167
359482043 498 PREDICTED: transcription factor E2FA [Vi 0.989 0.785 0.736 1e-166
147789754 735 hypothetical protein VITISV_025621 [Viti 0.949 0.510 0.685 1e-153
225464840457 PREDICTED: transcription factor E2FB-lik 0.982 0.849 0.675 1e-151
296084860446 unnamed protein product [Vitis vinifera] 0.982 0.869 0.675 1e-150
356537156 504 PREDICTED: transcription factor E2FA-lik 0.977 0.765 0.678 1e-150
357444349464 Transcription factor E2F5 [Medicago trun 0.984 0.838 0.676 1e-149
8977833431 transcription factor E2F [Daucus carota] 0.984 0.902 0.658 1e-144
255578585451 E2F4,5, putative [Ricinus communis] gi|2 0.898 0.787 0.684 1e-143
329568038471 E2F protein [Cocos nucifera] 0.979 0.821 0.649 1e-142
>gi|297740186|emb|CBI30368.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/395 (73%), Positives = 330/395 (83%), Gaps = 3/395 (0%)

Query: 1   MEDNEVETSEWVGSPGLTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVSNAGSP 60
           M+DNEV +SEW  SPG  +  N PF TPVS KGGR+ ++SK  KGN   PQTPVSNAGSP
Sbjct: 75  MDDNEVGSSEWTASPGYADAGNSPFRTPVSGKGGRIYSKSKVSKGNVCGPQTPVSNAGSP 134

Query: 61  SALTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 120
           S LTPAG+CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI
Sbjct: 135 STLTPAGNCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 194

Query: 121 GLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELI 180
           GLIEKKLKNRIRWKGLD S PGEVD D +ILQA+++NLS+EE R+D+  RE++E+LR+L 
Sbjct: 195 GLIEKKLKNRIRWKGLDVSRPGEVDDDVTILQAEVENLSLEERRLDDHIREMQEKLRDLS 254

Query: 181 ENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRS 240
           E+ENN+KWLFVTE+DIK L CFQN+TLIAIKAP GTTLEVPDPDEAVDYPQRRYRI+LRS
Sbjct: 255 EDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRS 314

Query: 241 TMGPIDVYLVSRFEEKFEETNSVEPPASVPPVSSSDSNENQVKEIINVDRAGNETEAQAQ 300
           TMGPIDVYLVS+FEEKFEE N   PP S P  SSS SNEN   E++  D +G E E   Q
Sbjct: 315 TMGPIDVYLVSQFEEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADSSGKELE--PQ 372

Query: 301 QAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSGAEWDGVNM 360
             +Q+ SDL +SQE +GG+MKIVP DVD+DADYWL SDA+VSITDMWKTDS  EW+GV+M
Sbjct: 373 DGYQMCSDLTASQEFIGGIMKIVP-DVDSDADYWLRSDAEVSITDMWKTDSYVEWNGVDM 431

Query: 361 LHAEFGMSDACTPTPQTPPSRITEVPSTDFNPIHR 395
           L+AEFGM+D  TP PQTPPS +TE PST  NP HR
Sbjct: 432 LNAEFGMADVSTPLPQTPPSGLTEGPSTAVNPTHR 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482043|ref|XP_002275458.2| PREDICTED: transcription factor E2FA [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789754|emb|CAN67410.1| hypothetical protein VITISV_025621 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464840|ref|XP_002272473.1| PREDICTED: transcription factor E2FB-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084860|emb|CBI28269.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356537156|ref|XP_003537096.1| PREDICTED: transcription factor E2FA-like [Glycine max] Back     alignment and taxonomy information
>gi|357444349|ref|XP_003592452.1| Transcription factor E2F5 [Medicago truncatula] gi|355481500|gb|AES62703.1| Transcription factor E2F5 [Medicago truncatula] Back     alignment and taxonomy information
>gi|8977833|emb|CAB95727.1| transcription factor E2F [Daucus carota] Back     alignment and taxonomy information
>gi|255578585|ref|XP_002530154.1| E2F4,5, putative [Ricinus communis] gi|223530315|gb|EEF32209.1| E2F4,5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|329568038|gb|AEB96141.1| E2F protein [Cocos nucifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:3685148469 E2F1 "E2F transcription factor 0.946 0.797 0.512 3.2e-88
TAIR|locus:2039220514 E2F3 "E2F transcription factor 0.726 0.558 0.556 1.4e-78
TAIR|locus:2202390396 ATE2F2 [Arabidopsis thaliana ( 0.577 0.575 0.493 1.4e-60
UNIPROTKB|Q15329346 E2F5 "Transcription factor E2F 0.551 0.630 0.441 2.1e-38
MGI|MGI:105091335 E2f5 "E2F transcription factor 0.503 0.594 0.466 2.1e-38
UNIPROTKB|F1MYH2463 E2F3 "Uncharacterized protein" 0.513 0.438 0.440 2.6e-38
UNIPROTKB|J9P6U4334 E2F3 "Uncharacterized protein" 0.513 0.607 0.440 2.6e-38
UNIPROTKB|F1RUH1358 E2F3 "Uncharacterized protein" 0.481 0.530 0.457 8.9e-38
UNIPROTKB|C9JYE9347 E2F5 "Transcription factor E2F 0.551 0.628 0.439 1.9e-37
UNIPROTKB|O00716465 E2F3 "Transcription factor E2F 0.513 0.436 0.436 1.9e-37
TAIR|locus:3685148 E2F1 "E2F transcription factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 202/394 (51%), Positives = 245/394 (62%)

Query:    17 LTNISNGPFHTPVSAKGGRVNNRSKGIKGNRSTPQTPVSNAGSP-SALTPAGSCRYDSSL 75
             +  ++ G   TPVS KGG+    S+  K N+S      SNAGSP +    AG+CRYDSSL
Sbjct:    75 VNELNTGVLQTPVSGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSL 134

Query:    76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 135
             GLLTKKFINLIK AEDGILDLNKAA+TLEVQKRRIYDITNVLEGIGLIEK LKNRI+WKG
Sbjct:   135 GLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKG 194

Query:   136 LDNSIPGEVDADASILQADIDNLSMEELRVDEQTXXXXXXXXXXXXXXXXXKWLFVTEED 195
             LD S PGE     + LQ ++ NL+ EE R+D+Q                  + LFVTE D
Sbjct:   195 LDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTEND 254

Query:   196 IKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEE 255
             IKNL CFQN+TLIA+KAP GTTLEVPDPDEA  Y QRRYRIILRSTMGPIDVYLVS+FEE
Sbjct:   255 IKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-QRRYRIILRSTMGPIDVYLVSQFEE 313

Query:   256 KFEE-------TNXXXXXXXXXXXXXXXXNENQVKEIINVDRAGNE--TEA--QAQQA-- 302
              FE+       +N                + + + E  +V     E  TE   + Q+   
Sbjct:   314 SFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVDD 373

Query:   303 -HQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSDA-DVSITDMWKTDSGAEWDGVNM 360
               ++YSD+ S  + V G+MKIVP D+D   DYW  S+  +VSITDMW  +SG +W+ +  
Sbjct:   374 TQRVYSDIES-HDFVDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMWPDESGPDWNQMIT 432

Query:   361 LHAEF-GMSD-ACTPTPQTPPSRITEVPSTDFNP 392
                +  G SD      PQTP S   E  +   +P
Sbjct:   433 FDQDHAGPSDNKILEQPQTPSSPTPEESTATRSP 466
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0003677 "DNA binding" evidence=IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0051302 "regulation of cell division" evidence=RCA;IMP
GO:0051446 "positive regulation of meiotic cell cycle" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0010090 "trichome morphogenesis" evidence=RCA;IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
TAIR|locus:2039220 E2F3 "E2F transcription factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202390 ATE2F2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q15329 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:105091 E2f5 "E2F transcription factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYH2 E2F3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6U4 E2F3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUH1 E2F3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYE9 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O00716 E2F3 "Transcription factor E2F3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNY0E2FA_ARATHNo assigned EC number0.64860.88600.7216yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021527001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (459 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00023246001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (280 aa)
    ••• 0.639
GSVIVG00021305001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (342 aa)
    ••• 0.531
RBR
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence;; Regulator of biologic [...] (1007 aa)
    • • 0.478

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 2e-32
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information 
 Score =  116 bits (293), Expect = 2e-32
 Identities = 47/67 (70%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 70  RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLK 128
           R + SLGLLT+KF+ L + + DGI DLN+AA+ L+V QKRRIYDITNVLEGIGLIEKK K
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKELDVKQKRRIYDITNVLEGIGLIEKKSK 60

Query: 129 NRIRWKG 135
           N IRW G
Sbjct: 61  NEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG2577354 consensus Transcription factor E2F/dimerization pa 100.0
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.87
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.78
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.07
KOG2829326 consensus E2F-like protein [Transcription] 98.63
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 94.55
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 93.81
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 92.52
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 92.07
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 90.95
COG1378247 Predicted transcriptional regulators [Transcriptio 90.19
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 90.14
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 90.09
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 87.5
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 87.33
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 86.6
PF1373055 HTH_36: Helix-turn-helix domain 84.32
COG3355126 Predicted transcriptional regulator [Transcription 83.43
PF14394171 DUF4423: Domain of unknown function (DUF4423) 83.29
TIGR02944130 suf_reg_Xantho FeS assembly SUF system regulator, 82.43
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 82.15
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 82.09
cd0009078 HTH_ARSR Arsenical Resistance Operon Repressor and 81.97
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 81.22
PF0907985 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The 80.96
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-68  Score=523.07  Aligned_cols=187  Identities=56%  Similarity=0.837  Sum_probs=180.2

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEeccCCCCCC
Q 016090           63 LTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPG  142 (395)
Q Consensus        63 ~~p~~~~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~  142 (395)
                      ..|.+.+|+++|||+||+|||.|++++|||++|||+||+.|+|||||||||||||||||||+|++||+|||+|.+....+
T Consensus        61 ~s~~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~  140 (354)
T KOG2577|consen   61 SSPSESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTG  140 (354)
T ss_pred             cCCCCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccccceeeehhhhhhcccceeeccccceeeecCCCcccc
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999987767


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCCeEEecC
Q 016090          143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPD  222 (395)
Q Consensus       143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPd  222 (395)
                      +..++.+.|++|++.|.++|+.||++|++|+++|+.|++|..|++|+||||+||++|+.|++|||||||||++|+||||+
T Consensus       141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~f~~q~vi~vkap~et~levp~  220 (354)
T KOG2577|consen  141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPGFDEQTVIAVKAPPETRLEVPD  220 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccccCCceEEEEecCCcceEeccc
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCceEEEEecCCCceEEEEecCccc
Q 016090          223 PDEAVDYPQRRYRIILRSTMGPIDVYLVSRFEE  255 (395)
Q Consensus       223 P~e~~~~~~~~YqI~LkS~~GPIdVyL~~~~~~  255 (395)
                      |++      .+|+|+|+|++||||||||++++.
T Consensus       221 ~~~------~~~~i~L~s~~GpI~v~l~~~e~~  247 (354)
T KOG2577|consen  221 PDE------DRYQIRLKSNQGPIDVYLCSEEEG  247 (354)
T ss_pred             CCC------CceEEEeccCCCceeEEecccccc
Confidence            984      479999999999999999998875

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>COG1378 Predicted transcriptional regulators [Transcription] Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF14394 DUF4423: Domain of unknown function (DUF4423) Back     alignment and domain information
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1cf7_A76 Structural Basis Of Dna Recognition By The Heterodi 6e-21
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 65  PAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLI 123
           P    R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGIGLI
Sbjct: 2   PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLI 61
Query: 124 EKKLKNRIRWKGL 136
           EKK KN I+WKG+
Sbjct: 62  EKKSKNSIQWKGV 74

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 2e-37
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 4e-05
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Length = 106 Back     alignment and structure
 Score =  130 bits (329), Expect = 2e-37
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCF 202
            +      L  D+  L   E ++D        +LR L E+ ++++  +VT +D++++   
Sbjct: 3   HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADP 62

Query: 203 QNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVS 251
             Q ++ IKAP  T L+  D  E        ++I L+S  GPIDV+L  
Sbjct: 63  AEQMVMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCP 104
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 100.0
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.96
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 99.3
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 93.33
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 93.11
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 92.73
1qbj_A81 Protein (double-stranded RNA specific adenosine D 92.01
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 91.75
1r7j_A95 Conserved hypothetical protein SSO10A; winged heli 91.05
2oqg_A114 Possible transcriptional regulator, ARSR family P; 89.91
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 89.13
3r0a_A123 Putative transcriptional regulator; structural gen 89.05
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 88.39
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 88.35
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 87.7
2gxg_A146 146AA long hypothetical transcriptional regulator; 84.6
1ku9_A152 Hypothetical protein MJ223; putative transcription 84.46
1y0u_A96 Arsenical resistance operon repressor, putative; s 84.26
2kko_A108 Possible transcriptional regulatory protein (possi 83.67
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 83.66
3qph_A342 TRMB, A global transcription regulator; transcript 83.14
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 82.75
2y75_A129 HTH-type transcriptional regulator CYMR; DNA bindi 82.32
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 82.18
1sfx_A109 Conserved hypothetical protein AF2008; structural 82.07
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 82.05
1on2_A142 Transcriptional regulator MNTR; helix-turn-helix, 80.89
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 80.83
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Back     alignment and structure
Probab=100.00  E-value=1.4e-37  Score=262.80  Aligned_cols=102  Identities=29%  Similarity=0.470  Sum_probs=97.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCCeEEecCC
Q 016090          144 VDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDP  223 (395)
Q Consensus       144 ~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP  223 (395)
                      +..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||+++||||||||+||+||||+|
T Consensus         4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp   83 (106)
T 2aze_B            4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS   83 (106)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCceEEEEecCCCceEEEEecC
Q 016090          224 DEAVDYPQRRYRIILRSTMGPIDVYLVSR  252 (395)
Q Consensus       224 ~e~~~~~~~~YqI~LkS~~GPIdVyL~~~  252 (395)
                      ++       +|||||||++||||||||++
T Consensus        84 ~~-------~yqi~LkS~~GPIdV~L~~~  105 (106)
T 2aze_B           84 SE-------NFQISLKSKQGPIDVFLCPE  105 (106)
T ss_dssp             SS-------CEEEEEECSSSCCEEECCTT
T ss_pred             Cc-------ceEEEEECCCCCEEEEEeCC
Confidence            84       69999999999999999986
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d2azeb1101 e.63.1.2 (B:201-301) Transcription factor E2F1 {Hu 1e-37
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 7e-34
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 6e-06
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 1e-37
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 151 LQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAI 210
           L  D+  L   E ++D        +LR L E+ ++++  +VT +D++++     Q ++ I
Sbjct: 6   LTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVI 65

Query: 211 KAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVS 251
           KAP  T L+  D  E        ++I L+S  GPIDV+L  
Sbjct: 66  KAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCP 99
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d2azeb1101 Transcription factor E2F1 {Human (Homo sapiens) [T 100.0
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.96
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 98.49
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 93.66
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 93.2
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 90.17
d1mkma175 Transcriptional regulator IclR, N-terminal domain 88.96
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 87.68
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 86.42
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 85.62
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 83.09
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 82.64
d1qzza192 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 80.71
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=264.32  Aligned_cols=100  Identities=30%  Similarity=0.459  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCCeEEecCCCcc
Q 016090          147 DASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEA  226 (395)
Q Consensus       147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP~e~  226 (395)
                      +++.|++|+++|.++|+.||++|++|+++|++|++|++|.+|+|||++||++|+||+++||||||||+||+||||+|++ 
T Consensus         2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~gT~LeVPdp~~-   80 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE-   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSS-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCCCEEeecCCCc-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999999985 


Q ss_pred             cCCCCCceEEEEecCCCceEEEEecCc
Q 016090          227 VDYPQRRYRIILRSTMGPIDVYLVSRF  253 (395)
Q Consensus       227 ~~~~~~~YqI~LkS~~GPIdVyL~~~~  253 (395)
                            +|||||||++||||||||++.
T Consensus        81 ------~yqi~lkS~~GpI~V~Lc~~e  101 (101)
T d2azeb1          81 ------NFQISLKSKQGPIDVFLCPEE  101 (101)
T ss_dssp             ------CEEEEEECSSSCCEEECCTTC
T ss_pred             ------cEEEEEecCCCCEEEEEeCCC
Confidence                  699999999999999999863
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure