Citrus Sinensis ID: 016092

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSHC
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccHHHHEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEccccc
cHHHHHHHHHHHHHccccHcHHHHHHccHHHHHHHccccccHHHHHccccccccccccccccccccccccccHccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEccccc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttvshc
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIqgttvshc
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSHC
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG******
******************************************************************************TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSD************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSA*****GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVS**
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSHC
**RNAASRLRALKGHVRCRVPSATRFASSSAVAS***************RSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVS*C
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSHC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P29677 504 Mitochondrial-processing N/A no 0.979 0.767 0.717 1e-157
Q9ZU25 503 Probable mitochondrial-pr no no 0.974 0.765 0.665 1e-139
O04308 499 Probable mitochondrial-pr no no 0.969 0.767 0.654 1e-122
P22695 453 Cytochrome b-c1 complex s yes no 0.759 0.662 0.353 2e-41
P32551 452 Cytochrome b-c1 complex s yes no 0.805 0.703 0.326 3e-40
Q9DB77 453 Cytochrome b-c1 complex s yes no 0.787 0.686 0.327 1e-39
P11914 482 Mitochondrial-processing yes no 0.769 0.630 0.382 7e-39
P23004 453 Cytochrome b-c1 complex s yes no 0.787 0.686 0.323 4e-38
Q42290 531 Probable mitochondrial-pr no no 0.784 0.583 0.307 1e-37
Q3SZ71 490 Mitochondrial-processing no no 0.767 0.618 0.322 1e-37
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  555 bits (1430), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/393 (71%), Positives = 328/393 (83%), Gaps = 6/393 (1%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L D
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
           CVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYR 360
           RCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQML+GGGGSFSAGGPGKGMYSRLY 
Sbjct: 297 RCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYL 354

Query: 361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVS 393
           RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT S
Sbjct: 355 RVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSS 387
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|P32551|QCR2_RAT Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2 Back     alignment and function description
>sp|Q9DB77|QCR2_MOUSE Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P23004|QCR2_BOVIN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2 Back     alignment and function description
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
356513189 511 PREDICTED: mitochondrial-processing pept 0.982 0.759 0.795 1e-173
356523720 509 PREDICTED: mitochondrial-processing pept 0.982 0.762 0.786 1e-173
356513191 508 PREDICTED: mitochondrial-processing pept 0.984 0.765 0.793 1e-171
225445041 506 PREDICTED: mitochondrial-processing pept 0.979 0.764 0.792 1e-168
224100403 506 predicted protein [Populus trichocarpa] 0.979 0.764 0.769 1e-165
255546263 507 mitochondrial processing peptidase alpha 0.989 0.771 0.771 1e-164
357520795 510 Mitochondrial-processing peptidase subun 0.984 0.762 0.768 1e-164
225442426 506 PREDICTED: mitochondrial-processing pept 0.979 0.764 0.785 1e-164
217075747 510 unknown [Medicago truncatula] gi|3885152 0.984 0.762 0.760 1e-163
449487989 505 PREDICTED: mitochondrial-processing pept 0.977 0.764 0.759 1e-163
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/396 (79%), Positives = 346/396 (87%), Gaps = 8/396 (2%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 175
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEMV
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 176 ELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235
           ELL+DCVRNPVFLDWEVNEQL KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 295
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 296 TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 355
           TGGDYRCQ +SG   THF LAFELPGGWHK KDAM LTVLQMLLGGGGSFSAGGPGKGMY
Sbjct: 300 TGGDYRCQKESGR--THFALAFELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMY 357

Query: 356 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 391
           SRLY+ VLNE+PQV   SAF+NIYN +G+FGIQ TT
Sbjct: 358 SRLYQNVLNEYPQVHEISAFNNIYNDTGIFGIQVTT 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100403|ref|XP_002311862.1| predicted protein [Populus trichocarpa] gi|222851682|gb|EEE89229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2034096 503 AT1G51980 [Arabidopsis thalian 0.974 0.765 0.570 4.2e-111
TAIR|locus:2088309 499 MPPalpha "mitochondrial proces 0.969 0.767 0.547 8.3e-106
ASPGD|ASPL0000062345 570 AN1104 [Emericella nidulans (t 0.556 0.385 0.339 6e-45
GENEDB_PFALCIPARUM|PFE1155c 534 PFE1155c "mitochondrial proces 0.782 0.578 0.354 9.3e-43
UNIPROTKB|Q8I3N3 534 PFE1155c "Mitochondrial proces 0.782 0.578 0.354 9.3e-43
SGD|S000001066 482 MAS2 "Larger subunit of the mi 0.769 0.630 0.344 8.7e-40
UNIPROTKB|F1P582 457 UQCRC2 "Uncharacterized protei 0.756 0.654 0.342 1.1e-39
UNIPROTKB|H3BRG4412 UQCRC2 "Cytochrome b-c1 comple 0.772 0.740 0.341 1.4e-39
UNIPROTKB|P22695 453 UQCRC2 "Cytochrome b-c1 comple 0.772 0.673 0.341 1.4e-39
ZFIN|ZDB-GENE-030131-1269 454 uqcrc2b "ubiquinol-cytochrome 0.769 0.669 0.330 2.9e-39
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 222/389 (57%), Positives = 270/389 (69%)

Query:     1 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFX 60
             MYR AASR RALKG V  R                         WL+G        LD  
Sbjct:     1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMP 59

Query:    61 XXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
                        D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G 
Sbjct:    60 LQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGA 119

Query:   121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
             THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID
Sbjct:   120 THLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLID 179

Query:   181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
              VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++R
Sbjct:   180 SVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDR 239

Query:   241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
             LN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+
Sbjct:   240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDF 299

Query:   301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYR 360
             R    +G + THF +AFE+PG W+ +K+A+T TVLQML+              M+S LYR
Sbjct:   300 R--QHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYR 356

Query:   361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQG 389
             RVLNE+ +VQS +AF++I+N +G+FGI G
Sbjct:   357 RVLNEYQEVQSCTAFTSIFNDTGLFGIYG 385
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H3BRG4 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.71750.97970.7678N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016635001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (506 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021058001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (523 aa)
  ••••••0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
COG0612 438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 3e-48
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 6e-43
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-25
COG1026 978 COG1026, COG1026, Predicted Zn-dependent peptidase 0.003
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  169 bits (429), Expect = 3e-48
 Identities = 83/318 (26%), Positives = 133/318 (41%), Gaps = 20/318 (6%)

Query: 78  KTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS 136
             ++ TLPNG+++ +     +P  S+ ++V  GS  E     G  H LE MAF+ T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  + 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 197 TKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYT 255
             +  EI    ++P  L  E +  A Y    L  P+L  E +I  +    L++F  + Y 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 256 GPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRC-----QADSGDQ 309
              MVL   G V+ +++V + E    DLP   P  +       G  R            +
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 310 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 369
                L +  P  +    D   L +L  LLGG           G  SRL++ +  +    
Sbjct: 256 QAWLALGYPGP-DYDSPDDYAALLLLNGLLGG-----------GFSSRLFQELREKRGLA 303

Query: 370 QSFSAFSNIYNHSGMFGI 387
            S S+FS+  + SG+F I
Sbjct: 304 YSVSSFSDFLSDSGLFSI 321

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG2067 472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960 467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.97
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.96
PRK15101 961 protease3; Provisional 99.94
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.92
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.84
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.79
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.78
PTZ00432 1119 falcilysin; Provisional 99.74
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.74
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.72
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.63
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.44
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.19
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.87
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 98.45
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.1
PHA03081 595 putative metalloprotease; Provisional 97.91
KOG0960467 consensus Mitochondrial processing peptidase, beta 96.31
KOG2067472 consensus Mitochondrial processing peptidase, alph 96.11
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 95.04
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 92.72
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 87.49
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2e-65  Score=463.45  Aligned_cols=318  Identities=49%  Similarity=0.765  Sum_probs=301.1

Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEe
Q 016092           75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS  154 (395)
Q Consensus        75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  154 (395)
                      ++.+++.++|+||++|..++++++.+++++++++|+++|.+...|++||+++|+|++|.+++..++...|+.+||+++++
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 016092          155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA  233 (395)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~  233 (395)
                      +++|++.|.+++.+++++.++++|+|.+.+|.|++|+++.++..++-|+.+...+|+..+.+.+|.++| +++++.+.++
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ChHHhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCCCceEEecCC-----
Q 016092          234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE--EPKSVYTGGDYRCQADS-----  306 (395)
Q Consensus       234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~~--~~~~~~~~~~~~~~~~~-----  306 (395)
                      +.+.|++|+.+.|.+|.+++|+|.||+++.|||+||++++.++++|+.||+...++  .+..+|+|+...+..+.     
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999854433  45678999976665331     


Q ss_pred             CcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEE
Q 016092          307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG  386 (395)
Q Consensus       307 ~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~  386 (395)
                      ..+-+||.++|++++  ++++|.+++.||+.+||||+|||||||||||+||||.+|.+++.|.|++.||+..|+|+|+|+
T Consensus       261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg  338 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG  338 (472)
T ss_pred             ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence            126799999999996  488999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCC
Q 016092          387 IQGTTVSH  394 (395)
Q Consensus       387 i~~~~~p~  394 (395)
                      |+.+++|+
T Consensus       339 i~~s~~P~  346 (472)
T KOG2067|consen  339 IYASAPPQ  346 (472)
T ss_pred             EeccCCHH
Confidence            99999986

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3cwb_B 441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-41
3bcc_B 422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 1e-38
1bcc_B 422 Cytochrome Bc1 Complex From Chicken Length = 422 2e-38
1hr6_A 475 Yeast Mitochondrial Processing Peptidase Length = 4 5e-38
1bcc_A 446 Cytochrome Bc1 Complex From Chicken Length = 446 7e-38
1qcr_B 423 Crystal Structure Of Bovine Mitochondrial Cytochrom 1e-36
1sqb_B 453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 1e-36
1bgy_B 439 Cytochrome Bc1 Complex From Bovine Length = 439 1e-36
1qcr_A 446 Crystal Structure Of Bovine Mitochondrial Cytochrom 5e-34
1bgy_A 446 Cytochrome Bc1 Complex From Bovine Length = 446 5e-34
1sqb_A 480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 6e-34
3cwb_A 446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-33
1hr6_B 443 Yeast Mitochondrial Processing Peptidase Length = 4 3e-24
1hr7_B 443 Yeast Mitochondrial Processing Peptidase Beta-E73q 7e-24
3hdi_A 421 Crystal Structure Of Bacillus Halodurans Metallo Pe 8e-24
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 5e-12
3amj_C 437 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-10
3ami_A 445 The Crystal Structure Of The M16b Metallopeptidase 2e-10
1ezv_A 430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-05
1kb9_A 431 Yeast Cytochrome Bc1 Complex Length = 431 2e-04
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 8/308 (2%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           +I+ LPNG+ IAS  + SP + I +++  GS YE+  + GT HLL   +  +T+  S  R
Sbjct: 27  EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
           I R +EA+GG++   ++RE+M Y  + L+ +V  ++E L++    P F  WEV +   ++
Sbjct: 87  ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 259
           K + +    +PQ  +LE +H+A Y  ALANPL  P+  I ++ S  L  FV  N+T  RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 260 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
            L   GV+H  L  VAE  L ++ S       K+ Y GG+ R Q  +G  L H  +  E 
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE- 262
Query: 320 PGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIY 379
            G      +A   +VLQ +L              + S+LY+ V     Q    SAF+  Y
Sbjct: 263 -GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNY 318
Query: 380 NHSGMFGI 387
           + SG+FG 
Sbjct: 319 SDSGLFGF 326
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 1e-129
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 1e-128
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 1e-115
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 1e-115
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-102
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-89
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 3e-78
3eoq_A406 Putative zinc protease; two similar domains of bet 7e-65
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 3e-39
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 4e-37
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 8e-37
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 6e-28
3go9_A 492 Insulinase family protease; IDP00573, structural g 5e-26
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 2e-18
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 8e-17
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 4e-05
3ih6_A 197 Putative zinc protease; bordetella pertussis toham 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  378 bits (974), Expect = e-129
 Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 10/338 (2%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 MVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233
           ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 293
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 294 VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 353
            Y GG+ R Q      L H  L  E         +A   +VLQ +LG G        G  
Sbjct: 238 KYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAG---PHVKRGSN 290

Query: 354 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 391
             S LY+ V     Q    SAF+  Y+ SG+FG    +
Sbjct: 291 ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 100.0
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3go9_A 492 Insulinase family protease; IDP00573, structural g 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.95
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.94
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.92
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.91
3ih6_A 197 Putative zinc protease; bordetella pertussis toham 99.16
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.41
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 98.11
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.1
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.09
3eoq_A406 Putative zinc protease; two similar domains of bet 98.08
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.07
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 97.95
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.85
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.83
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.7
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.55
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 97.22
3go9_A492 Insulinase family protease; IDP00573, structural g 96.9
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=2e-52  Score=416.31  Aligned_cols=316  Identities=36%  Similarity=0.583  Sum_probs=289.9

Q ss_pred             CCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec
Q 016092           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (395)
Q Consensus        77 ~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (395)
                      ++++.++|+||++|++.+.+.+.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++.+|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57889999999999988877889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 016092          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE  235 (395)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~  235 (395)
                      ++++.|++++++++++.+|++|.+++.+|.|++++|+++|..+.+|+++..++|...+.+.++..+| ++||+++.+|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            9999999999999999999999999999999999999999999999999889999999999999999 999999999999


Q ss_pred             HHhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCC-CCCCCCCCCCceEEecC----CCcCc
Q 016092          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL  310 (395)
Q Consensus       236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~  310 (395)
                      +.|++++.++|++||+++|+|+||+|+++|+++++++++++++|+.||....+ ..+.+.+.++..++...    .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865433 11223344444444421    33478


Q ss_pred             eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEE
Q 016092          311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT  390 (395)
Q Consensus       311 ~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~  390 (395)
                      +++.++|++++  .+++|.+++.|++.|||++++|++|||||||+++||++||++.|++|++++++..+.+.|.|+|+++
T Consensus       244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999875  4788999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             ecCC
Q 016092          391 TVSH  394 (395)
Q Consensus       391 ~~p~  394 (395)
                      ++|+
T Consensus       322 ~~~~  325 (475)
T 1hr6_A          322 CIPQ  325 (475)
T ss_dssp             ECGG
T ss_pred             eCHH
Confidence            9885
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 5e-36
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 4e-29
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 3e-28
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 1e-24
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 7e-23
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 7e-22
d1hr6a2 237 d.185.1.1 (A:234-470) Mitochondrial processing pep 8e-20
d1ppjb2 204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 1e-16
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-16
d3cx5a2 218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 7e-16
d1hr6b2 217 d.185.1.1 (B:246-462) Mitochondrial processing pep 6e-15
d1ppja2 209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 4e-14
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 7e-14
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 4e-04
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (324), Expect = 5e-36
 Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 6/215 (2%)

Query: 66  LPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLE 125
           +PP       P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL 
Sbjct: 1   VPPH------PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLR 54

Query: 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNP 185
             +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P
Sbjct: 55  LASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAP 114

Query: 186 VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245
            F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  P+  I ++    
Sbjct: 115 EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVE 174

Query: 246 LEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLS 280
           L ++V  ++T  RM L   GV H  L  VAE  L+
Sbjct: 175 LHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 209
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.98
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.95
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.86
d1hr6a2 237 Mitochondrial processing peptidase (MPP) alpha cha 99.7
d1hr6b2 217 Mitochondrial processing peptidase (MPP) beta chai 99.64
d1ppjb2 204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.63
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.47
d1ppja2 209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.4
d3cx5a2 218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.34
d2fgea2 196 Presequence protease 1, PREP1 {Thale cress (Arabid 98.8
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.72
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.62
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.5
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.49
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.33
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.67
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 97.6
d1q2la2 228 Protease III {Escherichia coli [TaxId: 562]} 97.57
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.44
d2fgea3 268 Presequence protease 1, PREP1 {Thale cress (Arabid 93.45
d1q2la3 240 Protease III {Escherichia coli [TaxId: 562]} 90.93
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 86.17
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 82.37
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-38  Score=281.60  Aligned_cols=210  Identities=32%  Similarity=0.521  Sum_probs=204.0

Q ss_pred             CeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecc
Q 016092           78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR  157 (395)
Q Consensus        78 ~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~  157 (395)
                      .+++++|+||++|+..+.+++.+.+++++++|+++|+++..|++|+++||+++||.+++..++.+.++.+|+.++++++.
T Consensus         5 ~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~~   84 (220)
T d1hr6a1           5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSR   84 (220)
T ss_dssp             CCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECS
T ss_pred             CceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhcccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 016092          158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES  236 (395)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~  236 (395)
                      +++.|.+++++++++.+|++|.+++.+|.|++++++++|..+.++++...++|...+.+.+++.+| ++||+++..|+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~~  164 (220)
T d1hr6a1          85 ENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG  164 (220)
T ss_dssp             SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG
T ss_pred             cceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCC
Q 016092          237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP  287 (395)
Q Consensus       237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~  287 (395)
                      .|++|+.++|++||+++|.|+||+|+|+|+++++++++++++|++||...+
T Consensus       165 ~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~  215 (220)
T d1hr6a1         165 LIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHP  215 (220)
T ss_dssp             GGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCC
Confidence            999999999999999999999999999998899999999999999987653
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure