Citrus Sinensis ID: 016110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
cHHHHHHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHccEEEEEcEEccccccccccccccEEEEEcccccccccccEEEccccEEEEEEEEccccccEEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccccccEEEcccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccc
HHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccc
MTRVFWKSIKDKLIFPFLELDIKYfdlglpnrdatddkVTVESAEATLKYNVAIkcatitpdeARVKEFVLKQMwkspngtirnilngtvfrepiicknvprlipgwtkpicigrhafgdqyratdtviqgpgklklvfvpegkdekteLEVYNFTGEGGVALSMYNTDESIRAFAEASMNtayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGtvesgkmtKDLALIIHGskmtrehylnTEEFIDAVADDLRARLSGKA
MTRVFWKSikdklifpfLELDIKYFDLGLPNRDATDDKVTVESaeatlkynvaikcatitpDEARVKEFVLkqmwkspngtirnilngtvfrepiICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIgtvesgkmtkdLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
***VFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD**********
MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS***
MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL****
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MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P50218415 Isocitrate dehydrogenase N/A no 0.989 0.942 0.925 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.989 0.939 0.920 0.0
Q06197413 Isocitrate dehydrogenase yes no 0.994 0.951 0.900 0.0
Q40345433 Isocitrate dehydrogenase N/A no 0.994 0.907 0.898 0.0
Q9Z2K9414 Isocitrate dehydrogenase N/A no 0.992 0.946 0.681 1e-164
Q9Z2K8414 Isocitrate dehydrogenase N/A no 0.992 0.946 0.679 1e-164
Q9XSG3414 Isocitrate dehydrogenase yes no 0.992 0.946 0.684 1e-164
P41562414 Isocitrate dehydrogenase yes no 0.992 0.946 0.681 1e-164
Q6XUZ5414 Isocitrate dehydrogenase N/A no 0.992 0.946 0.679 1e-163
P54071452 Isocitrate dehydrogenase yes no 0.977 0.853 0.696 1e-163
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/391 (92%), Positives = 376/391 (96%)

Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATIT
Sbjct: 20  MTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATIT 79

Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGD
Sbjct: 80  PDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGD 139

Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASM
Sbjct: 140 QYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASM 199

Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
           N AYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDM AY
Sbjct: 200 NMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMAAY 259

Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
           ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 260 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319

Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
           VHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLA
Sbjct: 320 VHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLA 379

Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLRARL 391
           LIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct: 380 LIIHGSKLSRDHYLNTEEFIDAVADELKARL 410
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1 Back     alignment and function description
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
5764653414 NADP-isocitrate dehydrogenase [Citrus li 1.0 0.954 0.984 0.0
224079726414 predicted protein [Populus trichocarpa] 1.0 0.954 0.936 0.0
213493066414 NADP-dependent isocitrate dehydrogenase 1.0 0.954 0.934 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 0.992 0.949 0.946 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 1.0 0.949 0.929 0.0
3811007412 NADP specific isocitrate dehydrogenase [ 0.992 0.951 0.933 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 1.0 0.949 0.924 0.0
2623962412 isocitrate dehydrogenase (NADP+) [Apium 0.992 0.951 0.928 0.0
82941453416 NADP-isocitrate dehydrogenase [Codonopsi 1.0 0.949 0.926 0.0
224135233414 predicted protein [Populus trichocarpa] 1.0 0.954 0.921 0.0
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/395 (98%), Positives = 394/395 (99%)

Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT
Sbjct: 20  MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 79

Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD
Sbjct: 80  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 139

Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIR+FAEASM
Sbjct: 140 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRSFAEASM 199

Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
           NTAYQKKWPLYLSTKNTILK YDG+FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY
Sbjct: 200 NTAYQKKWPLYLSTKNTILKNYDGKFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 259

Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
           ALKSEGGYVWACK+YDG+VQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 260 ALKSEGGYVWACKDYDGNVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319

Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
           VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAAC+GTVESGKMTKDLA
Sbjct: 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLA 379

Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 395
           LIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
Sbjct: 380 LIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 414

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|213493066|dbj|BAG84436.1| NADP-dependent isocitrate dehydrogenase [Passiflora edulis] Back     alignment and taxonomy information
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information
>gi|3811007|dbj|BAA34112.1| NADP specific isocitrate dehydrogenase [Daucus carota] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information
>gi|2623962|emb|CAA73139.1| isocitrate dehydrogenase (NADP+) [Apium graveolens] Back     alignment and taxonomy information
>gi|82941453|dbj|BAE48792.1| NADP-isocitrate dehydrogenase [Codonopsis lanceolata] Back     alignment and taxonomy information
>gi|224135233|ref|XP_002327598.1| predicted protein [Populus trichocarpa] gi|222836152|gb|EEE74573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.987 0.951 0.887 1.7e-192
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.992 0.942 0.870 3.7e-190
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.984 0.802 0.797 3e-172
ZFIN|ZDB-GENE-031006-1429 idh1 "isocitrate dehydrogenase 0.997 0.918 0.693 2.8e-153
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.977 0.914 0.696 2.3e-149
UNIPROTKB|Q9XSG3414 IDH1 "Isocitrate dehydrogenase 0.992 0.946 0.684 3e-149
UNIPROTKB|Q9Z2K9414 IDH1 "Isocitrate dehydrogenase 0.992 0.946 0.681 3e-149
UNIPROTKB|F1PZA1414 IDH1 "Isocitrate dehydrogenase 0.992 0.946 0.681 3.8e-149
MGI|MGI:96414452 Idh2 "isocitrate dehydrogenase 0.992 0.867 0.691 4.8e-149
ZFIN|ZDB-GENE-031118-95449 idh2 "isocitrate dehydrogenase 0.992 0.873 0.691 4.8e-149
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1865 (661.6 bits), Expect = 1.7e-192, P = 1.7e-192
 Identities = 348/392 (88%), Positives = 375/392 (95%)

Query:     1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
             MTRV WKSIKDKLI PF+ELDIKYFDLGLP+RDATDDKVT+ESAEAT KYNVAIKCATIT
Sbjct:    20 MTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTIESAEATKKYNVAIKCATIT 79

Query:    61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
             PDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP+L+PGWTKPICIGRHAFGD
Sbjct:    80 PDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVPKLVPGWTKPICIGRHAFGD 139

Query:   121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
             QYRATD VI+GPGKL + F  EGKD KTE EV+ FTGEGGVA++MYNTDESIRAFA+ASM
Sbjct:   140 QYRATDAVIKGPGKLTMTF--EGKDGKTETEVFTFTGEGGVAMAMYNTDESIRAFADASM 197

Query:   181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
             NTAY+KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSK++AAGIWYEHRLIDDMVAY
Sbjct:   198 NTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKYDAAGIWYEHRLIDDMVAY 257

Query:   241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
             ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+R
Sbjct:   258 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFR 317

Query:   301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
             VHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+GTVESGKMTKDLA
Sbjct:   318 VHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACVGTVESGKMTKDLA 377

Query:   361 LIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392
             LIIHGSK++R+ YLNTEEFIDAVA +L+ RL+
Sbjct:   378 LIIHGSKLSRDTYLNTEEFIDAVAAELKERLN 409
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS;IMP
GO:0006102 "isocitrate metabolic process" evidence=IEA;IMP
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;NAS
GO:0006739 "NADP metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031006-1 idh1 "isocitrate dehydrogenase 1 (NADP+), soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSG3 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z2K9 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Microtus mexicanus (taxid:79689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZA1 IDH1 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-95 idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.69660.97720.8539N/Ano
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.64280.98220.9486yesno
Q75JR3IDHC_DICDI1, ., 1, ., 1, ., 4, 20.66240.98730.9466yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.64280.98220.9486yesno
P41562IDHC_RAT1, ., 1, ., 1, ., 4, 20.68190.99240.9468yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.69660.97720.8539yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.90070.99490.9515yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.69660.97720.8539yesno
P41939IDHC_YEAST1, ., 1, ., 1, ., 4, 20.62530.99240.9514yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.64790.98220.9440N/Ano
Q9XSG3IDHC_BOVIN1, ., 1, ., 1, ., 4, 20.68440.99240.9468yesno
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.67930.99240.9468N/Ano
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.69400.97720.9168yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.89820.99490.9076N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.92090.98980.9399N/Ano
P50215IDH_SPHYA1, ., 1, ., 1, ., 4, 20.61980.97720.9507N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.92580.98980.9421N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.68190.99240.9468N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.67930.99240.9468N/Ano
O13285IDH1_CANTR1, ., 1, ., 1, ., 4, 20.66060.97460.8953N/Ano
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.65050.97720.8792yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.420.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0038019202
isocitrate dehydrogenase (NADP+) (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VIII0421
hypothetical protein (1021 aa)
     •• 0.907
estExt_Genewise1_v1.C_LG_X2288
hypothetical protein (1021 aa)
     •• 0.907
estExt_fgenesh4_pg.C_LG_XVI0781
SubName- Full=Putative uncharacterized protein; (363 aa)
     •••0.900
eugene3.00280188
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (361 aa)
     •••0.900
eugene3.00050378
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (339 aa)
     •• 0.900
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
eugene3.00570034
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_IX0030
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (372 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VII0812
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (367 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-155
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-97
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 2e-47
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 2e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 9e-05
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 3e-04
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 4e-04
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 0.002
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  881 bits (2277), Expect = 0.0
 Identities = 371/391 (94%), Positives = 383/391 (97%)

Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTRV WKSIKDKLIFPFL+LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT
Sbjct: 20  MTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 79

Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDEARVKEF LKQMWKSPNGTIRNILNGTVFREPIICKN+PRL+PGWTKPICIGRHAFGD
Sbjct: 80  PDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGD 139

Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QYRATD VI+GPGKLKLVFVPEGKDEKTELEVYNFTG GGVALSMYNTDESIRAFAEASM
Sbjct: 140 QYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAGGVALSMYNTDESIRAFAEASM 199

Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
           NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSKFEAAGIWYEHRLIDDMVAY
Sbjct: 200 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAY 259

Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
           ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 260 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319

Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
           VHQKGGETSTNSIASIFAWSRGLAHRAKLD NARLLDFTEKLEAAC+GTVESGKMTKDLA
Sbjct: 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTKDLA 379

Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLRARL 391
           L+IHG K++R+ YLNTEEFIDAVA++L+ARL
Sbjct: 380 LLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410

Length = 410
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 95.91
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 95.43
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 93.57
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 92.6
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.58
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 92.48
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.34
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 92.21
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.2
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.09
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.04
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.95
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 91.78
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 87.68
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 84.27
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information 
Probab=100.00  E-value=2.8e-104  Score=797.40  Aligned_cols=391  Identities=75%  Similarity=1.229  Sum_probs=349.0

Q ss_pred             CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110            1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG   80 (395)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~   80 (395)
                      |||++|+.||++|+.|+++|+|+++|+|.+++++||+++|++++++|+++|++||||++||...++.+..|+++|+|||+
T Consensus        17 m~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~~l~k~~~S~n~   96 (409)
T TIGR00127        17 MTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEFKLKKMWKSPNG   96 (409)
T ss_pred             HHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccH
Confidence            89999999999999999999999999999999999999999999999999999999999998644335556678999999


Q ss_pred             hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110           81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG  160 (395)
Q Consensus        81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (395)
                      +||+.||||+|+|||.+++++++.|++..|++++||||||.|.++|+.+.++|++|..|.+.++..++.....++...++
T Consensus        97 ~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~~~~~~~~~~~~  176 (409)
T TIGR00127        97 TIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVTLKVYDFEEGGG  176 (409)
T ss_pred             HHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccceeeeeccCCCC
Confidence            99999999999999988898888899999999999999999999999999999999999977653322212222221146


Q ss_pred             eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110          161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY  240 (395)
Q Consensus       161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~  240 (395)
                      ++.+.++|+++++||+|+||+||++|+++||+|||+|||+.+||+|+++|+||++++||++|++++|++++++||++||+
T Consensus       177 v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I~~~~~lVDa~~m~  256 (409)
T TIGR00127       177 VAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGIWYEHRLIDDMVAQ  256 (409)
T ss_pred             eEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCEEEEEeeHHHHHHH
Confidence            67677899999999999999999999999999999999999999999999999657999999999999999999999999


Q ss_pred             HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCC-CcccChhHHHHHH
Q 016110          241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG-ETSTNSIASIFAW  319 (395)
Q Consensus       241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk-~i~ANP~a~IlS~  319 (395)
                      ||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+||||||+++++|||| ++ |||+|+|||+
T Consensus       257 lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~iaGk~~~-ANP~A~IlS~  335 (409)
T TIGR00127       257 ALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQKGQETS-TNSIASIFAW  335 (409)
T ss_pred             HhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhCCCCCc-cChHHHHHHH
Confidence            999999999999999999999999999999999999999998634688999999998888888996 77 9999999999


Q ss_pred             HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110          320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS  392 (395)
Q Consensus       320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~  392 (395)
                      +|||+|+|+++.+..+.++|++|++||..|+++|++|+||+..+.|+.++.++.++|+||+|+|+++|+++|+
T Consensus       336 ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~~~L~~~~~  408 (409)
T TIGR00127       336 SRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILGGSPVERSAYLNTEEFIDAVEERLKKKIA  408 (409)
T ss_pred             HHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999999988766668899999999999999999999999210006333445569999999999999988775

This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-164
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-163
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-163
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-163
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-162
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-162
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-151
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-149
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-148
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-117
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-110
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-99
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 3e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  574 bits (1479), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/389 (69%), Positives = 312/389 (80%), Gaps = 3/389 (0%)
Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATIT
Sbjct: 19  MTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATIT 78
Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD
Sbjct: 79  PDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGD 138
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QY+ATD V+   G  K+VF P+      + EVYNF   GGV + MYNTDESI  FA +  
Sbjct: 139 QYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCF 197
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
             A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F+   IWYEHRLIDDMVA 
Sbjct: 198 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
            LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
            HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA
Sbjct: 318 EHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLA 377
Query: 361 LIIHGSKMTR--EHYLNTEEFIDAVADDL 387
             IHG    +  EH+LNT +F+D +  +L
Sbjct: 378 GCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 0.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 0.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 0.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-177
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 1e-19
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 2e-19
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 2e-04
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-10
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 4e-10
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 8e-10
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-09
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 3e-09
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 3e-09
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 7e-09
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 7e-09
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 2e-08
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 2e-08
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 4e-08
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  541 bits (1395), Expect = 0.0
 Identities = 271/396 (68%), Positives = 313/396 (79%), Gaps = 3/396 (0%)

Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATIT
Sbjct: 19  MTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATIT 78

Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD
Sbjct: 79  PDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGD 138

Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QY+ATD V+   G  K+VF P+      + EVYNF   GGV + MYNTDESI  FA +  
Sbjct: 139 QYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCF 197

Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
             A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F+   IWYEHRLIDDMVA 
Sbjct: 198 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257

Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
            LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317

Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
            HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA
Sbjct: 318 EHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLA 377

Query: 361 LIIHGSKMT--REHYLNTEEFIDAVADDLRARLSGK 394
             IHG       EH+LNT +F+D +  +L   L  +
Sbjct: 378 GCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 413
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 96.22
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 96.15
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 93.08
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 92.99
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 92.99
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 92.93
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 91.47
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=1.1e-105  Score=817.09  Aligned_cols=386  Identities=69%  Similarity=1.135  Sum_probs=345.3

Q ss_pred             CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110            1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG   80 (395)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~   80 (395)
                      |.+.||++++++|.+++++|+|+++++|.++++++|+++|++++++|++++++||||++||.+..++|+.+.++|+|+|+
T Consensus        41 IGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~~~~~s~n~  120 (427)
T 3us8_A           41 MTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKLKKMWKSPNG  120 (427)
T ss_dssp             HHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCccccccccccccccCchH
Confidence            35779999999999999999999999999999999999999999999999999999999998766666677778999999


Q ss_pred             hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110           81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG  160 (395)
Q Consensus        81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (395)
                      +||+.||||+|+||+.++++|++.+++++|+|||||||||+|+|+++.+.++|+.++.|.+++|. +.+..+.+|.+ .+
T Consensus       121 ~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G~-~~~~~~~~~~~-~~  198 (427)
T 3us8_A          121 TIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQ-TIEHDVYDAPG-AG  198 (427)
T ss_dssp             HHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTSC-EEEEEEEEESS-CE
T ss_pred             HHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccccc-cccccccccCC-Cc
Confidence            99999999999999966899876667789999999999999999999988888878777766552 22222233333 56


Q ss_pred             eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110          161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY  240 (395)
Q Consensus       161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~  240 (395)
                      ++..+++|+++++||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++||++|++++|++++++||+||||
T Consensus       199 va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mq  278 (427)
T 3us8_A          199 VALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVAS  278 (427)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHH
Confidence            77558889999999999999999999999999999999999999999999999854999888888999999999999999


Q ss_pred             HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110          241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS  320 (395)
Q Consensus       241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a  320 (395)
                      ||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||+++||||||++|||+|+|||++
T Consensus       279 lv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~a  358 (427)
T 3us8_A          279 ALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWT  358 (427)
T ss_dssp             HHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred             HhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcCCCCceeCHHHHHHHHH
Confidence            99999999999999999999999999999999999999998863489999999999888888999998899999999999


Q ss_pred             HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110          321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS  392 (395)
Q Consensus       321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~  392 (395)
                      |||+|||+++.+..+.++|++|++||.+|+++|++|+|||+.+ ++   ..+.++|+||+|+|+++|++.|.
T Consensus       359 mmL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~daV~~~l~~~l~  426 (427)
T 3us8_A          359 RGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDKIDENLRKAMA  426 (427)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHHHHHHHHHHhc
Confidence            9999999988777788999999999999999999999998422 10   12369999999999999998874
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-127
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-125
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 7e-43
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 8e-38
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-34
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-30
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-30
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 3e-28
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 1e-26
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-25
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-15
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  369 bits (949), Expect = e-127
 Identities = 266/393 (67%), Positives = 318/393 (80%), Gaps = 1/393 (0%)

Query: 1   MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
           MTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  K+NV +KCATIT
Sbjct: 18  MTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATIT 77

Query: 61  PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
           PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GD
Sbjct: 78  PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGD 137

Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
           QYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S 
Sbjct: 138 QYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF 197

Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
             A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA 
Sbjct: 198 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 257

Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
           A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR
Sbjct: 258 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYR 317

Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
           ++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   I T+E+G MTKDLA
Sbjct: 318 MYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLA 377

Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
             I G   + R  YLNT EF+D + ++L+ +L+
Sbjct: 378 ACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.48
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 95.52
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.7e-96  Score=743.80  Aligned_cols=390  Identities=67%  Similarity=1.113  Sum_probs=334.5

Q ss_pred             CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110            1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG   80 (395)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~   80 (395)
                      |+|++|+.|+++|+.++++|+|+++|+|.++|++||+++|+|+++++++++++||||++||....+++..+.+.++|+|+
T Consensus        19 it~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~~~~~~~~~~~~~~s~n~   98 (413)
T d1lwda_          19 MTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNG   98 (413)
T ss_dssp             HHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred             HHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCccccccccccccccchhh
Confidence            68999999999999999999999999999999999999999999999999999999999998655444445557899999


Q ss_pred             hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110           81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG  160 (395)
Q Consensus        81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (395)
                      .||+.||||+|+||+++.+.+|+.+++++|+|||||||||+|+|.++....+....+.+....|..........+ . ..
T Consensus        99 ~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-~-~~  176 (413)
T d1lwda_          99 TIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNF-P-AG  176 (413)
T ss_dssp             HHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCEEEEEEEE-S-SC
T ss_pred             hHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEeccccccccccccccc-c-cc
Confidence            999999999999999775555666677899999999999999999998877665555555444432111111111 1 22


Q ss_pred             eEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccC-ccccCCeEEceeeHHHHH
Q 016110          161 VALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS-KFEAAGIWYEHRLIDDMV  238 (395)
Q Consensus       161 ~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~-~~~~~~I~~~~~~VDa~a  238 (395)
                      .+.. .++|+.+++||+++||++|++|+++||++||+|||+.++|+|+++|+||+ ++||+ ++.+.+|+++++++|+|+
T Consensus       177 ~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva-~~~p~~~~~~~~I~~~~~~vd~~~  255 (413)
T d1lwda_         177 GVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIF-EKHYKTDFDKYKIWYEHRLIDDMV  255 (413)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHH-HHHTHHHHHHTTCCEEEEEHHHHH
T ss_pred             ccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHH-HHhccccccccEEEEehhhhhhhh
Confidence            3333 88999999999999999999999999999999999999999999999998 67774 455557999999999999


Q ss_pred             HHHHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccc-cccCCCcccChhHHHH
Q 016110          239 AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV-HQKGGETSTNSIASIF  317 (395)
Q Consensus       239 ~~lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~-dIAGk~i~ANP~a~Il  317 (395)
                      |+|+++|+.|||||+|||||||||++|+++|||||+||+|+|+++...+|||+|||||+|+.. ||+|||+ |||+||||
T Consensus       256 ~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~iagk~i-ANP~a~Il  334 (413)
T d1lwda_         256 AQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTS-TNPIASIF  334 (413)
T ss_dssp             HHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTTCCCC-CCCHHHHH
T ss_pred             hhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcchhhcCCccc-cChHHHHH
Confidence            999999987799999999999999999999999999999999986557899999999988875 8899999 99999999


Q ss_pred             HHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcC--CcccccCHHHHHHHHHHHHHHHhccC
Q 016110          318 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM--TREHYLNTEEFIDAVADDLRARLSGK  394 (395)
Q Consensus       318 S~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~--~~~~~~sT~e~~daV~~~l~~~l~~~  394 (395)
                      |++|||+|||+.+.+..+.++|++|++||.+|+++|++|+|||+...|...  ...+.+||+||+|+|+++|+++|.++
T Consensus       335 S~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~daV~~~L~~~l~~~  413 (413)
T d1lwda_         335 AWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHCCCCCcccCCCccccccccccCCccCHHHHHHHHHHHHHHHHccC
Confidence            999999999998777778999999999999999999999999843222100  01234799999999999999999875
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure