Citrus Sinensis ID: 016124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Secondary Structure (PSIPRED)
cHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msgivdslkddePLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILElnrgtesadlvlplfslgslfikegkavdaESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIkdsnymsldDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITekykgkehpsFVTHLLNLAASYSRSKNFVEAERLLRICLDImtktvgpddqsisfpmlhLGITLYHLNRDKEAEKLVLEALYIREIafgkdslpvgeALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLgrkeekfplKKRLSNLRMKYKQKVQY
Flexible Loop (DISEMBL)
msgivdslkddEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILelnrgtesADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEkykgkehpSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAfgkdslpvgEALDCLVSIQtrlgeddtklLELLKRVLRIqerefgseseevmLTLKKVVSyldklgrkeekfplkkrlsnlrmkykqkvqy
Low Complexity Region (SEG)
MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVgrgqegrelleecllITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered region (IsUnstruct)
*************LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL**************************
Disordered Region (DISOPRED)
*SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL***Y******
Disordered Region (DISEMBL)
MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered Region (DISPRO)
MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGIVDSLKDDEPLLDAILLHMGSMYSTxxxxxxxxxxxxxxxxxxxxxYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.817	0.247	0.246	5e-15
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.771	0.231	0.238	6e-14
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.804	0.239	0.239	2e-13
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.812	0.240	0.237	3e-13
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.857	0.259	0.243	1e-12
P46822	540	Kinesin light chain OS=Ca	yes	no	0.5	0.364	0.320	3e-10
P46825	571	Kinesin light chain OS=Do	N/A	no	0.431	0.297	0.304	8e-10
Q05090	686	Kinesin light chain OS=St	no	no	0.411	0.236	0.306	2e-09
Q5R581	560	Kinesin light chain 1 OS=	yes	no	0.565	0.398	0.252	1e-08
Q07866	573	Kinesin light chain 1 OS=	no	no	0.565	0.389	0.252	1e-08

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 27/349 (7%)

Query: 58   VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 113
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 912  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQS 971

Query: 114  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 972  KKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1031

Query: 174  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 211
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1032 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1091

Query: 212  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1092 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1151

Query: 272  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ + D  
Sbjct: 1152 TVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDA 1211

Query: 332  LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380
             L L +R ++I E   G     V  TLK +     + G  E+   L KR
Sbjct: 1212 -LPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDYEKAAELYKR 1259

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus laevis (taxid: 8355)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 27/331 (8%)

Query: 58   VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 113
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 923  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQS 982

Query: 114  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 983  KKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1042

Query: 174  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 211
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1043 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1102

Query: 212  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1103 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 272  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +   +
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQAE 1221

Query: 332  LLELLKRVLRIQEREFGSESEEVMLTLKKVV 362
               L +R ++I E   G     V  TLK + 
Sbjct: 1222 ASPLYERAMKIYEDSLGRMHPRVGETLKNLA 1252

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 145/343 (42%), Gaps = 26/343 (7%)

Query: 47   ESRYGKTSILLVTSLL-GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 105
            E+  G+ ++L +  L   + + L  +G   +AV    R + I E     +   +   L  
Sbjct: 926  ENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQ 985

Query: 106  LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 165
            L  ++++  K  DAE ++ + L+I    YG +       + +LA         E+A    
Sbjct: 986  LAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNKYEQAEHFR 1045

Query: 166  KKALRVIKDSNY--------------------MSLDDSIMENMRI--DLAELLHIVGRGQ 203
            KK++ + + +                      ++L     EN R   +L  L  +    +
Sbjct: 1046 KKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLE 1105

Query: 204  EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 263
               + L+  L + E+  G +HP     L NLAA  +  K + +AE L    LDI  + + 
Sbjct: 1106 TAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRRALA 1165

Query: 264  PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 323
            PD  S+++ + HL I      +  +A  L   A+ IR+ +FG     V  AL  L  + +
Sbjct: 1166 PDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHS 1225

Query: 324  RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 364
            ++ +  ++ L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1226 QM-KKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1267

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 34/354 (9%)

Query: 22   MGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 74
            +  +Y TL  +        ++++  QR + + E+        +  SL  +A V     + 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 75   KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134
              A ++Y + + I E   G +       L +L +L+ K+ K   AE    +  KI+ K  
Sbjct: 1002 GNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAI 1061

Query: 135  GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI--DL 192
             +     G A+                  L ++AL++ +    ++L     +N R   +L
Sbjct: 1062 KKKGNLYGFAL------------------LRRRALQLEE----LTLGKDTPDNARTLNEL 1099

Query: 193  AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252
              L ++    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L  
Sbjct: 1100 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE 1159

Query: 253  ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 312
              LDI  + + PD  S+++ + HL I    + +  +A  L   A+ IR+ +FG     V 
Sbjct: 1160 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA 1219

Query: 313  EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 364
             AL  L  + +++ +   + L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1220 TALVNLAVLYSQM-KKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1272

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 156/370 (42%), Gaps = 32/370 (8%)

Query: 6    DSLKDDEPLLDA--ILLHMGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSIL 56
            D+LK+ E   ++   +  + ++Y TL  +        +++   QR + + E+        
Sbjct: 902  DALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPS 961

Query: 57   LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA 116
            +  SL  +A V     +   A ++Y + + I E   G E + +   L SL  L+ K+ K 
Sbjct: 962  VAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLYQKQNKY 1021

Query: 117  VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176
              AE +  R +KI  K   +     G A+                  L ++AL++  +  
Sbjct: 1022 EQAEKLRKRSVKIRQKTARQKGHMYGFAL------------------LKRRALQL--EEL 1061

Query: 177  YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 236
             +  D +       +L  L ++       +  L   L + ++  G +HP     L NLAA
Sbjct: 1062 TLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQSLNNLAA 1121

Query: 237  SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 296
             +S  K +  AE L    LDI  + + PD  S+++ + HL +      + ++A  L   A
Sbjct: 1122 LHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELA 1181

Query: 297  LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 356
            L IRE +FG     V  AL  L  +  +L +  +  L L +R L++ E   G     V  
Sbjct: 1182 LEIREKSFGPKHPSVATALVNLAVLYCQLKQ-HSDALPLYERALKVYEDSLGRLHPRVGE 1240

Query: 357  TLKK--VVSY 364
            TLK   V+SY
Sbjct: 1241 TLKNLAVLSY 1250

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 6/203 (2%)

Query: 153 CANGNAEEAVELYKKALRVI-KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211
            + G  E AV L K+AL  + K S +   D + M N+   LA +     + +E   LL E
Sbjct: 217 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI---LALVYRDQNKYKEAANLLNE 273

Query: 212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271
            L I EK  G+ HP+    L NLA  + +   F +AE L +  L+I  K +G D   ++ 
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREKVLGDDHPDVAK 333

Query: 272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331
            + +L +   +  + +E EK    AL I E   G D   V +  + L S   + G+   +
Sbjct: 334 QLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGK-YKE 392

Query: 332 LLELLKRVL-RIQEREFGSESEE 353
             EL K++L R  EREFG  S E
Sbjct: 393 AEELYKQILTRAHEREFGQISGE 415

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1

 Score = 65.5 bits (158), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 200 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259
           GR +    L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  
Sbjct: 234 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEAANLLNDALGIRE 293

Query: 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319
           KT+GPD  +++  + +L +      + K+AE L   AL IRE   GKD   V + L+ L 
Sbjct: 294 KTLGPDHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLA 353

Query: 320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 370
            +    G+ + ++    +R L I ++E G +   V  T   + S   K G+
Sbjct: 354 LLCQNQGKYE-EVERYYQRALEIYQKELGPDDPNVAKTKNNLASAYLKQGK 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Loligo pealeii (taxid: 1051067)

>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 208 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 267
           L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+GPD  
Sbjct: 237 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAGNLLHDALAIREKTLGPDHP 296

Query: 268 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 327
           +++  + +L +      + KEAE L   AL IRE   GKD   V + L+ L  +    G+
Sbjct: 297 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 356

Query: 328 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 370
            + ++    +R L I E++ G +   V  T   + +   K G+
Sbjct: 357 YE-EVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGK 398

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 11  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 71  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 190
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 191 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 242
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 243 NF 244
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Pongo abelii (taxid: 9601)

>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 11  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 71  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 190
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 191 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 242
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 243 NF 244
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
225455344	573	PREDICTED: nephrocystin-3-like [Vitis vi	1.0	0.687	0.730	1e-168
302143919	559	unnamed protein product [Vitis vinifera]	1.0	0.704	0.730	1e-168
224135115	579	predicted protein [Populus trichocarpa]	0.992	0.675	0.721	1e-165
255561868	505	kinesin light chain, putative [Ricinus c	0.992	0.774	0.716	1e-162
297792665	562	hypothetical protein ARALYDRAFT_495375 [	0.987	0.692	0.647	1e-150
449497357	561	PREDICTED: nephrocystin-3-like [Cucumis	1.0	0.702	0.659	1e-149
356509235	577	PREDICTED: nephrocystin-3-like [Glycine	1.0	0.682	0.682	1e-149
18423468	564	kinesin light chain-related protein [Ara	0.992	0.693	0.649	1e-148
449456393	564	PREDICTED: nephrocystin-3-like [Cucumis	1.0	0.698	0.647	1e-145
357463995	580	Kinesin light chain [Medicago truncatula	0.989	0.672	0.687	1e-144

>gi|225455344|ref|XP_002272297.1| PREDICTED: nephrocystin-3-like [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/394 (73%), Positives = 340/394 (86%)

Query: 1   MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 60
           M  IVD LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T 
Sbjct: 180 MDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITP 239

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
           LLGMAK LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DAE
Sbjct: 240 LLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAE 299

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
             F+RIL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+L
Sbjct: 300 IPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMAL 359

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
           DD+IME MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYSR
Sbjct: 360 DDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSR 419

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           SKNFVEAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL IR
Sbjct: 420 SKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIR 479

Query: 301 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 360
           E AFGK+SLPVGEALDCLVSIQTR+G+DD++LL+LLKRVL IQE+EFG ESEEVM+TLKK
Sbjct: 480 EAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKK 539

Query: 361 VVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +V YLDK+GRK+EKFPL+KRLS LR K+K+ +QY
Sbjct: 540 IVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143919|emb|CBI23024.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/394 (73%), Positives = 340/394 (86%)

Query: 1   MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 60
           M  IVD LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T 
Sbjct: 166 MDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITP 225

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
           LLGMAK LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DAE
Sbjct: 226 LLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAE 285

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
             F+RIL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+L
Sbjct: 286 IPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMAL 345

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
           DD+IME MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYSR
Sbjct: 346 DDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSR 405

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           SKNFVEAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL IR
Sbjct: 406 SKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIR 465

Query: 301 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 360
           E AFGK+SLPVGEALDCLVSIQTR+G+DD++LL+LLKRVL IQE+EFG ESEEVM+TLKK
Sbjct: 466 EAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKK 525

Query: 361 VVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +V YLDK+GRK+EKFPL+KRLS LR K+K+ +QY
Sbjct: 526 IVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135115|ref|XP_002321987.1| predicted protein [Populus trichocarpa] gi|222868983|gb|EEF06114.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/391 (72%), Positives = 338/391 (86%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           +V+ L DDEPLLD++L+HMGSMYS L  +EKSMLVYQRVI +LE  +GK S  LV+ LLG
Sbjct: 189 VVERLTDDEPLLDSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKGSAFLVSPLLG 248

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           MAK+LGSIG+A KA+E+Y RVI+ILE +RG ES DLV+PL  LG+L IKEG+A DAES+F
Sbjct: 249 MAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKEGRATDAESLF 308

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
           +RIL IY + YGE DGR GMA+CS+AH KCA GNAEEA+ LY+KAL+VIKD++YM++DDS
Sbjct: 309 NRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIKDADYMAVDDS 368

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           IME MRIDLAELLH+VGRG EGRELLEECLLITEKYKGK+HPS VTHL+NLA SYS+SKN
Sbjct: 369 IMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLINLATSYSQSKN 428

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
           +V+AERLLR  L+IM K+V PDD SI+FPMLHL +TLY LN+D+EAE+L LE L+IRE A
Sbjct: 429 YVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLTLEVLHIREKA 488

Query: 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
           FGKDSLPVGEALDCLVSIQTRLG+ + +LL+LLK+VL+IQE+EFG ESEEVM TLKK+V 
Sbjct: 489 FGKDSLPVGEALDCLVSIQTRLGKPEAELLDLLKQVLKIQEKEFGYESEEVMRTLKKIVF 548

Query: 364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           YLDK GRK+EKF ++KRLS LRMKY Q +QY
Sbjct: 549 YLDKTGRKDEKFSMQKRLSVLRMKYNQMMQY 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561868|ref|XP_002521943.1| kinesin light chain, putative [Ricinus communis] gi|223538868|gb|EEF40467.1| kinesin light chain, putative [Ricinus communis]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/391 (71%), Positives = 333/391 (85%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           ++ +LKDD PLLD++L+HMGSMYS L  +EKSM+ YQRVI+VLES+YG++SI +V  LLG
Sbjct: 115 VIKNLKDDGPLLDSVLMHMGSMYSALGKFEKSMIAYQRVISVLESKYGESSIFIVPPLLG 174

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           M KVLGSIGR  KA E+Y RVI ILE  RG ES +LV+PLF LG+L +KEG+  DAE  F
Sbjct: 175 MGKVLGSIGRVNKATEVYQRVIIILESGRGAESKELVVPLFGLGNLLMKEGRTTDAEIHF 234

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
            RIL IY K+YGENDGR GMA+CS+A+ KC+ GN EEA++LY+KAL VIKDSNYM+ DD+
Sbjct: 235 IRILNIYRKLYGENDGRYGMALCSVANLKCSTGNVEEAIDLYRKALEVIKDSNYMAKDDT 294

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           +ME MRIDLAELLH+VGRG+EGRELLEECLLITE+YKGKEHPS V HLLNLA SYS+SKN
Sbjct: 295 VMEKMRIDLAELLHVVGRGKEGRELLEECLLITEEYKGKEHPSSVAHLLNLATSYSQSKN 354

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
           FVEAERLLRI L+IM KTV P+DQS++FPML L +TLY+LNRD+EAE+L +E L IRE A
Sbjct: 355 FVEAERLLRISLEIMMKTVSPEDQSVTFPMLQLAMTLYNLNRDEEAEQLAVEVLRIREKA 414

Query: 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
           FGKDSLPVGEALDCLVSIQTRL   DT+LLELLKRVL+IQE+EFG ESEEV+ TLKK+V 
Sbjct: 415 FGKDSLPVGEALDCLVSIQTRLERADTELLELLKRVLKIQEKEFGYESEEVLQTLKKIVF 474

Query: 364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           YL K+GRK+EKF ++KRLS LR KYKQ V+Y
Sbjct: 475 YLAKVGRKDEKFSMQKRLSVLRTKYKQMVRY 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792665|ref|XP_002864217.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata] gi|297310052|gb|EFH40476.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/391 (64%), Positives = 324/391 (82%), Gaps = 2/391 (0%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           IVD+LKD EPLLD++L+H+GSMYS +  +E S+L +QR + +LE+RYGK + LLVT LLG
Sbjct: 174 IVDNLKDSEPLLDSVLMHVGSMYSAIGKFENSILTHQRAVRILENRYGKGNTLLVTPLLG 233

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +AK+  S G+A KA+ +Y R +TILE NRG++S DLV+PLFSLG L +KEGKA +AE  F
Sbjct: 234 LAKIFASDGKATKAIGVYERTVTILERNRGSQSEDLVMPLFSLGKLLLKEGKAAEAEIHF 293

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
           +RI+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++YK ALR+IKDS  M++D+S
Sbjct: 294 TRIVNIYKKIYGEKDGRVGMAMCSLANAKCSKGDANEAVDIYKNALRIIKDS--MAIDNS 351

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           I+ENMR DLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYSRSKN
Sbjct: 352 ILENMRTDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKN 411

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
           +VEAERLLR CL+IM ++VG +DQSI+FPML+L +TL  LNRD+EAE++ L+ L IRE A
Sbjct: 412 YVEAERLLRTCLNIMEESVGSEDQSITFPMLNLAVTLSQLNRDEEAEQVALKVLRIREKA 471

Query: 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
           F KDSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE EFGS +EE+++TL+K++ 
Sbjct: 472 FAKDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEEEFGSSAEELIVTLQKIIH 531

Query: 364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +L+KL  K+EKF  ++RL+ LR K+KQ + +
Sbjct: 532 FLEKLEMKDEKFKFRRRLALLREKHKQSLSF 562

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497357|ref|XP_004160380.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/394 (65%), Positives = 331/394 (84%)

Query: 1   MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 60
           ++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S  L+T 
Sbjct: 168 LNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSSFLITP 227

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
           +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KEGK  DAE
Sbjct: 228 ILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGKGKDAE 287

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
           + F+RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDSN ++L
Sbjct: 288 TCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSNDIAL 347

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
           DDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLAASYSR
Sbjct: 348 DDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLAASYSR 407

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           SKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE L IR
Sbjct: 408 SKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVLRIR 467

Query: 301 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 360
           E AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +EV+ TLKK
Sbjct: 468 ENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVIDTLKK 527

Query: 361 VVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 528 IVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509235|ref|XP_003523356.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/394 (68%), Positives = 329/394 (83%)

Query: 1   MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 60
           M  +VD+LKDD P LD+IL+HMGSMY+TL  +EKS+ VYQR + ++E  YG  S  LVT 
Sbjct: 184 MKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYQRAVYIMERTYGMDSTFLVTP 243

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
            LGMAKVLGSIG+A KA+E Y RVIT+LE +RGT+S DLV+PL SL +L +KEG+A DAE
Sbjct: 244 CLGMAKVLGSIGKATKAIETYQRVITLLESSRGTKSKDLVVPLLSLANLLLKEGRANDAE 303

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
           + F+R+L IYT++YG+NDG++GMAM SLA  KCA G ++EA++L+K+A++V+KDSNY+S 
Sbjct: 304 THFTRVLNIYTELYGQNDGKIGMAMSSLARVKCAQGKSDEAIQLFKRAIQVMKDSNYLSP 363

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
           DD+IME MR+DLAELLH VGRGQEGRELLEECL ITE+YKGKEHPS VTH++NLA SYSR
Sbjct: 364 DDNIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERYKGKEHPSLVTHMINLATSYSR 423

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           SKN+ +AE LLR  L IM K  G DDQSISFPMLHL +TLYHL +D+EAEKL LE L IR
Sbjct: 424 SKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKKDEEAEKLALEVLRIR 483

Query: 301 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 360
           E AFGK+SLPVGEALDCLVSIQTRLG D+++LLELL+R+L IQEREFG ESEEV++TLKK
Sbjct: 484 EKAFGKNSLPVGEALDCLVSIQTRLGRDESELLELLRRILNIQEREFGRESEEVLVTLKK 543

Query: 361 VVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +V YLDKLG+K+EK  L++RLS L  KYKQ V Y
Sbjct: 544 IVYYLDKLGKKDEKLTLQRRLSVLSKKYKQMVNY 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423468|ref|NP_568784.1| kinesin light chain-related protein [Arabidopsis thaliana] gi|53828571|gb|AAU94395.1| At5g53080 [Arabidopsis thaliana] gi|332008918|gb|AED96301.1| kinesin light chain-related protein [Arabidopsis thaliana]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/391 (64%), Positives = 325/391 (83%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           IVD+LKD EPLLD++L+H+GSMYS +  +E ++LV+QR I +LE+RYGK + LLVT LLG
Sbjct: 174 IVDNLKDSEPLLDSVLMHVGSMYSVIGKFENAILVHQRAIRILENRYGKCNTLLVTPLLG 233

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           MAK   S G+A KA+ +Y R +TILE NRG+ES DLV+PLFSLG L +KEGKA +AE  F
Sbjct: 234 MAKSFASDGKATKAIGVYERTLTILERNRGSESEDLVVPLFSLGKLLLKEGKAAEAEIPF 293

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
           + I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++Y+ ALR+IKDSNYM++D+S
Sbjct: 294 TSIVNIYKKIYGERDGRVGMAMCSLANAKCSKGDANEAVDIYRNALRIIKDSNYMTIDNS 353

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           I+ENMRIDLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYSRSKN
Sbjct: 354 ILENMRIDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKN 413

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
           +VEAERLLR CL+IM  +VG + QSI+FPML+L +TL  LNRD+EAE++ L+ L IRE A
Sbjct: 414 YVEAERLLRTCLNIMEVSVGSEGQSITFPMLNLAVTLSQLNRDEEAEQIALKVLRIREKA 473

Query: 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
           FG+DSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE+EFG  ++E+++TL+K++ 
Sbjct: 474 FGEDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEKEFGPSAQELIVTLQKIIH 533

Query: 364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           +L+KL  K++KF  ++RL+ LR +YKQ + Y
Sbjct: 534 FLEKLEMKDDKFKFRRRLALLRERYKQSLSY 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456393|ref|XP_004145934.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/397 (64%), Positives = 327/397 (82%), Gaps = 3/397 (0%)

Query: 1   MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 60
           ++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S  L+T 
Sbjct: 168 LNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSSFLITP 227

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
           +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KE  A+D  
Sbjct: 228 ILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKESLALDYS 287

Query: 121 SVFS---RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177
             F    RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDSN 
Sbjct: 288 LTFMAPFRIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSND 347

Query: 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 237
           ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLAAS
Sbjct: 348 IALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLAAS 407

Query: 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297
           YSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE L
Sbjct: 408 YSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVL 467

Query: 298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 357
            IRE AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +EV+ T
Sbjct: 468 RIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVIDT 527

Query: 358 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
           LKK+V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 528 LKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463995|ref|XP_003602279.1| Kinesin light chain [Medicago truncatula] gi|355491327|gb|AES72530.1| Kinesin light chain [Medicago truncatula]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/390 (68%), Positives = 319/390 (81%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           +VD+LKDD P LD+I++HMG+MY+TL  +E+S+  YQR + ++E  YGK S +LVT  LG
Sbjct: 190 VVDTLKDDAPHLDSIVMHMGNMYATLNKFEESLNTYQRAVYIVERIYGKDSTILVTPHLG 249

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           MAK LGSIG+A KAVEIY  VIT+LE NRG ES DLV+PL SLG+L +KEG+A DAES F
Sbjct: 250 MAKALGSIGKATKAVEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLKEGRANDAESRF 309

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
           SR+L IYTKVYGENDGR+GMAM SLA  KCA G  +EA+ L+K+AL+V+KDSNYMS D+S
Sbjct: 310 SRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKTDEAIHLFKRALKVMKDSNYMSPDNS 369

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           IME MR+DLAELLH  GRGQ+GRE+LEECLLITE+YKGKEHPS  TH++NLA SY+RSKN
Sbjct: 370 IMEKMRVDLAELLHTSGRGQKGREILEECLLITERYKGKEHPSLATHMINLATSYTRSKN 429

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
           + EAE LLR  L IM K  G DDQSISFPML L  TLYHL  D+EAEKL LE L IRE A
Sbjct: 430 YAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKLALEVLRIREKA 489

Query: 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
           FG  SLPVGEALDCLVSIQ RLG+DD++LLELL+R+L IQE+ FG ESE+V+LTLKK+V 
Sbjct: 490 FGDYSLPVGEALDCLVSIQARLGKDDSELLELLRRILIIQEKGFGHESEQVLLTLKKIVY 549

Query: 364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 393
           YLDKLGRK+EK PL++RLS LR KYK  + 
Sbjct: 550 YLDKLGRKDEKLPLQRRLSVLRKKYKHMIH 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2168387	564	AT5G53080 [Arabidopsis thalian	0.992	0.693	0.613	9.6e-128
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.720	0.759	0.272	6.5e-16
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.720	0.759	0.272	6.5e-16
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.898	0.274	0.254	3e-15
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.421	0.126	0.315	1.5e-14
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.525	0.159	0.252	1.6e-13
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.408	0.122	0.242	2e-08
ZFIN|ZDB-GENE-091204-117	1302	nphp3 "nephronophthisis 3" [Da	0.421	0.127	0.309	2.6e-12
RGD|1563856	1325	Nphp3 "nephronophthisis 3 (ado	0.421	0.125	0.309	2.7e-12
UNIPROTKB|D4A1W7	1325	Acad11 "Acyl-CoA dehydrogenase	0.421	0.125	0.309	2.7e-12

TAIR|locus:2168387 AT5G53080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 240/391 (61%), Positives = 311/391 (79%)

Query:     4 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
             IVD+LKD EPLLD++L+H+GSMYS +  +E ++LV+QR I +LE+RYGK + LLVT LLG
Sbjct:   174 IVDNLKDSEPLLDSVLMHVGSMYSVIGKFENAILVHQRAIRILENRYGKCNTLLVTPLLG 233

Query:    64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
             MAK   S G+A KA+ +Y R +TILE NRG+ES DLV+PLFSLG L +KEGKA +AE  F
Sbjct:   234 MAKSFASDGKATKAIGVYERTLTILERNRGSESEDLVVPLFSLGKLLLKEGKAAEAEIPF 293

Query:   124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
             + I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++Y+ ALR+IKDSNYM++D+S
Sbjct:   294 TSIVNIYKKIYGERDGRVGMAMCSLANAKCSKGDANEAVDIYRNALRIIKDSNYMTIDNS 353

Query:   184 IMENMRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
             I+ENMRIDLAELLH V               I E++KGK HPS  THL+NLAASYSRSKN
Sbjct:   354 ILENMRIDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKN 413

Query:   244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303
             +VEAERLLR CL+IM  +VG + QSI+FPML+L +TL  LNRD+EAE++ L+ L IRE A
Sbjct:   414 YVEAERLLRTCLNIMEVSVGSEGQSITFPMLNLAVTLSQLNRDEEAEQIALKVLRIREKA 473

Query:   304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363
             FG+DSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE+EFG  ++E+++TL+K++ 
Sbjct:   474 FGEDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEKEFGPSAQELIVTLQKIIH 533

Query:   364 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 394
             +L+KL  K++KF  ++RL+ LR +YKQ + Y
Sbjct:   534 FLEKLEMKDDKFKFRRRLALLRERYKQSLSY 564

GO:0009507 "chloroplast" evidence=ISM

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:    20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 79
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:    80 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 199
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   200 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:    20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 79
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:    80 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 199
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   200 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 224 (83.9 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 94/370 (25%), Positives = 164/370 (44%)

Query:    10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKV 67
             D    LD +  ++G++YS     +++  +YQR +   E   G   TS L   + LG+  +
Sbjct:   790 DHTSTLDTVN-NLGNLYSDQGKLKEAEKMYQRALAGKEKALGPDHTSTLDTVNNLGI--L 846

Query:    68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 127
                 G+ K+A E+Y R +   E   G +    ++ + +LG+L+  +GK  +AE ++ + L
Sbjct:   847 YSDQGKLKEAEEMYQRALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQAL 906

Query:   128 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 187
             K Y K  G +       + +L       G  +EA E+Y++AL   K+        S ++ 
Sbjct:   907 KGYEKALGPDHTSTLDTVNNLGSLYKNQGKLKEAEEMYQQALAG-KEKALGPDHTSTLDT 965

Query:   188 MRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 247
             +  +L  L                     EK  G +H S +  + NL + YS      EA
Sbjct:   966 VN-NLGILYKNQGKLKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEA 1024

Query:   248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307
             E++ +  L    K +GPD  S    + +LG       + KEAEK+  +AL   E A G D
Sbjct:  1025 EKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPD 1084

Query:   308 ---SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKV-VS 363
                +L     L  L S Q +L E +    ++ ++ L   E+  G +    + T+  + + 
Sbjct:  1085 HTSTLVTVNNLGNLYSDQGKLKEAE----KMYQQALAGYEKAVGPDHTSTLDTVNNLGIL 1140

Query:   364 YLDKLGRKEE 373
             Y D+ G+ +E
Sbjct:  1141 YSDQ-GKLKE 1149

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 54/171 (31%), Positives = 84/171 (49%)

Query:   217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
             E+  G  HP     L NLAA Y+  K++ +AE L    LDI  + + PD  S+++ + HL
Sbjct:  1110 ERVLGPNHPDCAQSLNNLAALYNEKKHYDKAEELYEKALDIRRRALAPDHPSLAYTVKHL 1169

Query:   277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
              +    + +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +  T+ L L 
Sbjct:  1170 AVLYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQTEALPLY 1228

Query:   337 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 385
             +R L+I E  FG     V  TLK   V+SY  + G  E+   L KR   ++
Sbjct:  1229 ERALKIYEDSFGHMHPRVGETLKNLAVLSY--EGGDFEKAAELYKRAMEIK 1277

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 164 (62.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 53/210 (25%), Positives = 90/210 (42%)

Query:   178 MSLDDSIMENMRI--DLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLA 235
             ++L     +N R   +L  L ++                + E+  G +HP     + NLA
Sbjct:  1056 LTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHPDCAQSINNLA 1115

Query:   236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 295
             A Y+  K + +AE L    LDI  + + PD  S+++ + HL +      +  +A  L   
Sbjct:  1116 ALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYEL 1175

Query:   296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVM 355
             A+ IR+ +FG     V  AL  L  +  ++ + D  L  L +R ++I E   G     V 
Sbjct:  1176 AVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDAL-PLYERAMKIYEDSLGRMHPRVG 1234

Query:   356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 385
              TLK +     + G  E+   L KR   ++
Sbjct:  1235 ETLKNLAVLRYEEGDYEKAAELYKRAMEIK 1264

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 163 (62.4 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 39/161 (24%), Positives = 79/161 (49%)

Query:    11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
             D P     + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +   
Sbjct:  1114 DHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKR 1173

Query:    71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
              G+  KAV +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R +KIY
Sbjct:  1174 KGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLYERAMKIY 1233

Query:   131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
                 G    RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1234 EDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKRAMEI 1274

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

ZFIN|ZDB-GENE-091204-117 nphp3 "nephronophthisis 3" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
             ++  G +HP     L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1096 QRVLGPDHPDCAQSLNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHL 1155

Query:   277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
              +      + ++A  L   AL IRE +FG     V  AL  L  +  +L +  +  L L 
Sbjct:  1156 AMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQL-KQHSDALPLY 1214

Query:   337 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 385
             +R L++ E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1215 ERALKVYEDSLGRLHPRVGETLKNLAVLSYEE--GDFEKAAELYKRAMEIK 1263

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007601 "visual perception" evidence=IMP

GO:0060026 "convergent extension" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0060972 "left/right pattern formation" evidence=IMP

RGD|1563856 Nphp3 "nephronophthisis 3 (adolescent)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   337 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 385
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0001822 "kidney development" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0007163 "establishment or maintenance of cell polarity" evidence=ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=ISO

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0048496 "maintenance of organ identity" evidence=ISO

GO:0060027 "convergent extension involved in gastrulation" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060993 "kidney morphogenesis" evidence=ISO

GO:0071908 "determination of intestine left/right asymmetry" evidence=ISO

GO:0071909 "determination of stomach left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072189 "ureter development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|D4A1W7 Acad11 "Acyl-CoA dehydrogenase family member 11" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   337 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 385
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037240001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (542 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00004706001	SubName- Full=Chromosome undetermined scaffold_784, whole genome shotgun sequence; (220 aa)			•						0.504
	GSVIVG00032964001	SubName- Full=Chromosome chr14 scaffold_63, whole genome shotgun sequence; (224 aa)			•						0.482

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 72
          P L A L ++  +   L +Y++++ + ++ + +     G+       +L  +A++  ++G
Sbjct: 2  PDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALG 60

Query: 73 RAKKAVEIYHRVITILE 89
             +A+E   + + + E
Sbjct: 61 DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
           L +L  +  + G   +A  +  + L++  +  GE+      A+ +LA    A G+ +EA+
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 163 ELYKKALRVIKD 174
           E  +KAL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251
           LA +L  +G   E  ELLE+ L +  +  G++HP     L NLA  Y    ++ EA   L
Sbjct: 11  LALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 252 RICLDIMTK 260
              L +   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 283
           HP     L NLA    R  ++ EA  LL   L++  + +G D    +  + +L      L
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59

Query: 284 NRDKEAEKLVLEALYIRE 301
               EA + + +AL +RE
Sbjct: 60  GDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 56  LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 115
            L  +L  +A VL  +G   +A+E+  + + +     G +  +    L +L  L++  G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGD 61

Query: 116 AVDAESVFSRILKIYTK 132
             +A     + L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
           LL +  +   +G   +A+E Y +    LEL+     A      ++L + + K GK  +A 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKA---LELDPDNADA-----YYNLAAAYYKLGKYEEAL 54

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
             + + L++              A  +L  A    G  EEA+E Y+KAL +
Sbjct: 55  EDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 203
           A+ +L +     G+ +EA+E Y+KAL +  D +              +LA   + +G+ +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADA--------YYNLAAAYYKLGKYE 51

Query: 204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257
           E  E  E+ L +         P       NL  +Y +   + EA       L++
Sbjct: 52  EALEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307
           + +L   L    R +EAE+L+ EAL IR    G D
Sbjct: 5   LNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG1126	638	consensus DNA-binding cell division cycle control	99.92
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.87
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.85
KOG2003	840	consensus TPR repeat-containing protein [General f	99.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.84
KOG1129	478	consensus TPR repeat-containing protein [General f	99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
PRK12370	553	invasion protein regulator; Provisional	99.84
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.84
PRK12370	553	invasion protein regulator; Provisional	99.83
PRK04841	903	transcriptional regulator MalT; Provisional	99.83
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.81
KOG2003	840	consensus TPR repeat-containing protein [General f	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
KOG2076	895	consensus RNA polymerase III transcription factor	99.8
PRK11189	296	lipoprotein NlpI; Provisional	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.79
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.78
PRK04841	903	transcriptional regulator MalT; Provisional	99.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.76
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.76
KOG1125	579	consensus TPR repeat-containing protein [General f	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.74
PLN03077	857	Protein ECB2; Provisional	99.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
PLN03077	857	Protein ECB2; Provisional	99.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.71
KOG1125	579	consensus TPR repeat-containing protein [General f	99.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.61
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.59
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
PLN02789	320	farnesyltranstransferase	99.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.55
PLN02789	320	farnesyltranstransferase	99.54
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.49
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.48
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.46
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.41
PRK15359	144	type III secretion system chaperone protein SscB;	99.39
PRK15359	144	type III secretion system chaperone protein SscB;	99.39
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.37
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.31
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.3
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.3
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.21
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.21
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.2
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.2
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.19
KOG1585	308	consensus Protein required for fusion of vesicles	99.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.17
KOG1585	308	consensus Protein required for fusion of vesicles	99.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.17
KOG0553	304	consensus TPR repeat-containing protein [General f	99.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.16
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.16
KOG0553	304	consensus TPR repeat-containing protein [General f	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.09
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.07
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.04
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.04
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.01
PF12688	120	TPR_5: Tetratrico peptide repeat	99.0
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.97
PF12688	120	TPR_5: Tetratrico peptide repeat	98.97
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.94
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.89
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.89
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.87
PRK10803	263	tol-pal system protein YbgF; Provisional	98.86
PRK10803	263	tol-pal system protein YbgF; Provisional	98.83
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.83
KOG1586	288	consensus Protein required for fusion of vesicles	98.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.76
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.74
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.73
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.72
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.72
KOG1586	288	consensus Protein required for fusion of vesicles	98.72
PRK15331	165	chaperone protein SicA; Provisional	98.71
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.7
KOG4555	175	consensus TPR repeat-containing protein [Function	98.69
KOG4555	175	consensus TPR repeat-containing protein [Function	98.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.65
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.62
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.6
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.59
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.57
PRK15331	165	chaperone protein SicA; Provisional	98.57
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.51
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.5
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.5
PRK11906	458	transcriptional regulator; Provisional	98.5
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.47
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.46
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.46
PF13512	142	TPR_18: Tetratricopeptide repeat	98.44
PF13512	142	TPR_18: Tetratricopeptide repeat	98.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.43
KOG4234	271	consensus TPR repeat-containing protein [General f	98.41
KOG4234	271	consensus TPR repeat-containing protein [General f	98.38
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.38
KOG2471	696	consensus TPR repeat-containing protein [General f	98.38
KOG2471	696	consensus TPR repeat-containing protein [General f	98.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.35
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.34
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.34
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.34
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.33
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.31
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.3
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.26
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.25
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.24
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.22
PF13371	73	TPR_9: Tetratricopeptide repeat	98.21
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.21
PRK11906	458	transcriptional regulator; Provisional	98.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.11
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.09
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.05
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.02
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.01
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.0
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.92
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.9
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.86
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.86
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.82
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.82
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.75
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.74
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.72
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.71
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.71
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.68
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.63
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.57
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.56
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.45
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.44
PF13428	44	TPR_14: Tetratricopeptide repeat	97.41
PF13428	44	TPR_14: Tetratricopeptide repeat	97.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.36
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.33
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.3
PF13431	34	TPR_17: Tetratricopeptide repeat	97.29
PF13431	34	TPR_17: Tetratricopeptide repeat	97.28
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.23
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.17
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.1
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.07
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.05
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.98
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.69
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.67
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.55
PRK14707	2710	hypothetical protein; Provisional	96.47
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.45
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.43
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.32
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.28
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.24
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.23
PRK14707	2710	hypothetical protein; Provisional	96.17
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.13
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.05
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.04
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.9
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.75
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.73
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.68
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.6
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.59
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.39
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.38
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.3
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.18
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.99
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.92
KOG0687	393	consensus 26S proteasome regulatory complex, subun	94.9
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.76
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.75
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.72
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.71
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.69
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.61
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.58
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.57
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.55
KOG3364	149	consensus Membrane protein involved in organellar	94.47
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.46
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.27
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.16
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.15
KOG0508	615	consensus Ankyrin repeat protein [General function	94.14
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.13
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.1
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.03
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.97
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	93.88
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.63
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.6
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.56
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.33
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.29
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.2
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.06
PRK10941	269	hypothetical protein; Provisional	92.7
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.69
PRK10941	269	hypothetical protein; Provisional	92.49
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.35
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.21
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.19
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.08
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.88
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.82
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.72
COG5187	412	RPN7 26S proteasome regulatory complex component,	91.55
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	91.44
KOG0508	615	consensus Ankyrin repeat protein [General function	91.42
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.31
PF12854	34	PPR_1: PPR repeat	91.03
KOG3364	149	consensus Membrane protein involved in organellar	91.01
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.57
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.45
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	90.34
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.32
COG3947	361	Response regulator containing CheY-like receiver a	90.03
PF12854	34	PPR_1: PPR repeat	89.97
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	89.68
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	89.66
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	89.54
COG3947	361	Response regulator containing CheY-like receiver a	89.39
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	89.36
PF13041	50	PPR_2: PPR repeat family	89.23
KOG2908	380	consensus 26S proteasome regulatory complex, subun	88.85
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	88.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.81
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	88.29
PF13041	50	PPR_2: PPR repeat family	88.2
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.68
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	87.64
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.42
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	87.26
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.64
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.06
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.96
PHA02537	230	M terminase endonuclease subunit; Provisional	85.72
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.51
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	85.39
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.19
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	85.06
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.64
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.09
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.07
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	83.9
KOG2908	380	consensus 26S proteasome regulatory complex, subun	83.21
KOG2422	665	consensus Uncharacterized conserved protein [Funct	82.89
KOG1258	577	consensus mRNA processing protein [RNA processing	82.02
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	81.98
PRK09169	2316	hypothetical protein; Validated	81.93
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	80.86
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.32
KOG1310	758	consensus WD40 repeat protein [General function pr	80.27
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	80.24

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=2.3e-36  Score=253.50  Aligned_cols=339  Identities=22%  Similarity=0.278  Sum_probs=308.1

Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      +......-+.+...........+..+..+..+|....+...++..|..+|+|+.|+..+++++++..+..+.+++.+...
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~  243 (508)
T KOG1840|consen  164 ADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM  243 (508)
T ss_pred             HhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH
Confidence            33333333333555555556666666677888999999999999999999999999999999999999888889999999


Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      ...+|.+|..++++.+|+..|++|+.+.+..+|+++|.++.++.+||..|...|++++|..++++|+++.++.  .+..+
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~  321 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASH  321 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccCh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985  67788


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  262 (394)
                      +.+...+.+++.++...+++++|..++++++++....++.+++.++..+.+||.+|..+|++++|.+++++++.+.++..
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~  401 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL  401 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                      +..++.....+..+|..|.+.+++.+|...|.++..+. ..+|+++|.+..++.+|+.+|..+|+++ +|+++.++++.+
T Consensus       402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~  479 (508)
T KOG1840|consen  402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNA  479 (508)
T ss_pred             cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999 8999999999999999999999999999 999999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHH
Q 016124          343 QEREFGSESEEVMLTLKKVVSYL  365 (394)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~la~~~  365 (394)
                      .+...+..+|.....-..++...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~  502 (508)
T KOG1840|consen  480 REQRLGTASPTVEDEKLRLADLS  502 (508)
T ss_pred             HHHcCCCCCcchhHHHHhhhHHH
Confidence            99988888877666555444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.9e-36  Score=253.94  Aligned_cols=313  Identities=28%  Similarity=0.387  Sum_probs=295.1

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124            5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus         5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      .+.++..+|....+...++..|..+|+|++|+..+++++++..+..+..++.+...+..+|.+|..++++.+|+.+|++|
T Consensus       188 ~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A  267 (508)
T KOG1840|consen  188 AKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA  267 (508)
T ss_pred             HHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  164 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  164 (394)
                      +.+.+...|.++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..+
T Consensus       268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l  347 (508)
T KOG1840|consen  268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL  347 (508)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccH
Q 016124          165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  244 (394)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  244 (394)
                      +++++++....  ++++++.+..++.++|.+|..+|++++|.+++++++.+.++..+..++.+...+.++|..|.+.+++
T Consensus       348 ~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~  425 (508)
T KOG1840|consen  348 LQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY  425 (508)
T ss_pred             HHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence            99999999865  7888889999999999999999999999999999999999998888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124          245 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  320 (394)
Q Consensus       245 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  320 (394)
                      .+|...|.++..+. +..|+++|.+...+.+|+.+|..+|+++.|+++.+.++...+...+..++.....-..++.
T Consensus       426 ~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (508)
T KOG1840|consen  426 EEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD  500 (508)
T ss_pred             chHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence            99999999999999 8899999999999999999999999999999999999999999988888776554444433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-39  Score=263.66  Aligned_cols=321  Identities=17%  Similarity=0.228  Sum_probs=253.8

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh-------------C-------------CchHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-------------G-------------KTSILLVTSLLGM   64 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~-------------~~~~~~~~~~~~l   64 (394)
                      ..|+..+++.++|.++...|+.+.|...|.+++++.....             |             ...|..+.+|.++
T Consensus       145 l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL  224 (966)
T KOG4626|consen  145 LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL  224 (966)
T ss_pred             cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc
Confidence            4566666677777777777777777777766666521100             0             0013344456667


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      |.++..+|+...|+..|++|+.+        +|....+|.+||.+|...+.|++|+.+|.+|+.+        .|..+.+
T Consensus       225 g~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a  288 (966)
T KOG4626|consen  225 GCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVA  288 (966)
T ss_pred             chHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhh
Confidence            77777777777777777777665        5777788888888888888888888888888765        5666778


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      +.++|.+|..+|..+-|+..|++++++.       |.   ...++.|+|..+...|+..+|..+|.+++.+        .
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-------P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~  350 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALELQ-------PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------C  350 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhcC-------CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHh--------C
Confidence            8888888888888888888888888742       22   2456789999999999999999999999886        3


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      |..+.++++||.+|..+|.+++|..+|.++++.        .|..+.+..+||.+|.++|++++|+.+|++++++.    
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~----  418 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK----  418 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC----
Confidence            566778899999999999999999999999884        46778888999999999999999999999998865    


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                          |..+.++.++|..|..+|+.. .|+.+|.+|+.+        +|..++++.+||.+|...|+..+|+..|++++.+
T Consensus       419 ----P~fAda~~NmGnt~ke~g~v~-~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  419 ----PTFADALSNMGNTYKEMGDVS-AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             ----chHHHHHHhcchHHHHhhhHH-HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence                788889999999999999998 999999999875        6888999999999999999999999999999998


Q ss_pred             HHHHHH
Q 016124          385 RMKYKQ  390 (394)
Q Consensus       385 ~~~~~~  390 (394)
                      ++++.+
T Consensus       486 kPDfpd  491 (966)
T KOG4626|consen  486 KPDFPD  491 (966)
T ss_pred             CCCCch
Confidence            877654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=256.47  Aligned_cols=321  Identities=18%  Similarity=0.191  Sum_probs=237.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..|..+++|.++|+++...|++++|+..|+.++++        .|..++++.++|.++...|+.+.|...|..++++...
T Consensus       111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~  182 (966)
T KOG4626|consen  111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD  182 (966)
T ss_pred             ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence            46778899999999999999999999999999986        3667788888888888888888888888887776210


Q ss_pred             hc-------------C-------------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           91 NR-------------G-------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        91 ~~-------------~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      ..             |             ...|..+.+|.+||.++..+|+...|+.+|++|+.+        +|....+
T Consensus       183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dA  254 (966)
T KOG4626|consen  183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDA  254 (966)
T ss_pred             hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHH
Confidence            00             0             012334444555555555555555555555555544        4566667


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      |.+||.+|...+.|++|+..|.+|+.+.       |   ..+.++.|+|.+|..+|..+-|+..|++++++        .
T Consensus       255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------p---n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~  316 (966)
T KOG4626|consen  255 YINLGNVYKEARIFDRAVSCYLRALNLR-------P---NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------Q  316 (966)
T ss_pred             HhhHHHHHHHHhcchHHHHHHHHHHhcC-------C---cchhhccceEEEEeccccHHHHHHHHHHHHhc--------C
Confidence            7777777777777777777777776632       2   22455677777777777777777777777764        5


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      |....++.+||..+...|+..+|..+|.+++.+        .|..+.+..+||.++..+|.+++|..+|+++++..    
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----  384 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----  384 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----
Confidence            667778888888888888888888888888874        35556677888888888888888888888888765    


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                          |..+.+..+||.+|.++|+.+ +|+.+|+.++.+        .|..++++.++|..|..+|+...|+..|.+++.+
T Consensus       385 ----p~~aaa~nNLa~i~kqqgnl~-~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  385 ----PEFAAAHNNLASIYKQQGNLD-DAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             ----hhhhhhhhhHHHHHHhcccHH-HHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence                667777888888888888888 888888888865        4677888888888888888888888888888887


Q ss_pred             HHHHHH
Q 016124          385 RMKYKQ  390 (394)
Q Consensus       385 ~~~~~~  390 (394)
                      .+.+.+
T Consensus       452 nPt~Ae  457 (966)
T KOG4626|consen  452 NPTFAE  457 (966)
T ss_pred             CcHHHH
Confidence            776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.2e-29  Score=228.48  Aligned_cols=324  Identities=15%  Similarity=0.154  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .+..+..+|..++..|+|++|+..|++++.+.     ++    ...+.++|.+|...|++++|+..+++++++       
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------  189 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PD----PVYYSNRAACHNALGDWEKVVEDTTAALEL-------  189 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----Cc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence            45667899999999999999999999999863     22    246889999999999999999999999986       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH-----------------------------------------------
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-----------------------------------------------  127 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------------------  127 (394)
                       .|....++..+|.+|..+|++++|+..+..+.                                               
T Consensus       190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~  268 (615)
T TIGR00990       190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL  268 (615)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence             56678889999999999999999976554332                                               


Q ss_pred             ----------------------------------------------HHHHHhhC--CCchHHHHHHHHHHHHHHHCCCHH
Q 016124          128 ----------------------------------------------KIYTKVYG--ENDGRVGMAMCSLAHAKCANGNAE  159 (394)
Q Consensus       128 ----------------------------------------------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~  159 (394)
                                                                    ..++....  ...|....++..+|.++..+|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~  348 (615)
T TIGR00990       269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL  348 (615)
T ss_pred             HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence                                                          11111111  113455567888899999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          160 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       160 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                      +|+..+++++++.       |.   ....+..+|.++...|++++|+..++++++.        +|....++..+|.++.
T Consensus       349 eA~~~~~kal~l~-------P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       349 EALADLSKSIELD-------PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHcC-------CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence            9999999998753       22   2345678888888888888888888888764        3455667888888888


Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      ..|++++|+..|++++.+        .|.....+..+|.++...|++++|+..+++++...        |.....+..+|
T Consensus       411 ~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg  474 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYG  474 (615)
T ss_pred             HcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHH
Confidence            888888888888888773        45556667778888888888888888888777643        33344567777


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhc--------------------C-------------CCCHHHHHHHHHHHHHHH
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREF--------------------G-------------SESEEVMLTLKKVVSYLD  366 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~--------------------~-------------~~~~~~~~~~~~la~~~~  366 (394)
                      .++...|+++ +|+..|++++.+.....                    +             ..+|+...++..+|.++.
T Consensus       475 ~~~~~~g~~~-~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~  553 (615)
T TIGR00990       475 ELLLDQNKFD-EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL  553 (615)
T ss_pred             HHHHHccCHH-HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            7777777777 77777777665422100                    0             012344456788999999


Q ss_pred             HhcCchhhhhhHHHHHHHHHHHHH
Q 016124          367 KLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       367 ~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                      ..|++++|+.+|++++++.+..++
T Consensus       554 ~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       554 QQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HccCHHHHHHHHHHHHHHhccHHH
Confidence            999999999999999998876544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=4.3e-27  Score=211.23  Aligned_cols=313  Identities=12%  Similarity=0.009  Sum_probs=253.6

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124            9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      ....|....++..+|......|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.+ 
T Consensus        69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-  139 (656)
T PRK15174         69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-  139 (656)
T ss_pred             HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            34566667788899999999999999999999998862        444567889999999999999999999999986 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                             .|....++..++.++...|++++|+..+.+++..     .++++.   .+..++ .+...|++++|+..++++
T Consensus       140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRGD---MIATCL-SFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCHH---HHHHHH-HHHHcCCHHHHHHHHHHH
Confidence                   4566778889999999999999999999977665     223332   333333 478899999999999988


Q ss_pred             HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH--
Q 016124          169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE--  246 (394)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--  246 (394)
                      +....      .+..   .....++.++...|++++|+..+++++..        +|....++.++|.++...|++++  
T Consensus       204 l~~~~------~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~  266 (656)
T PRK15174        204 LPFFA------LERQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAK  266 (656)
T ss_pred             HhcCC------Ccch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhH
Confidence            76421      1111   12245678899999999999999999874        45667888999999999999986  


Q ss_pred             --HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 016124          247 --AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  324 (394)
Q Consensus       247 --A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (394)
                        |+..+++++.+        .|....++..+|.++...|++++|+..+++++...        |....++..+|.++..
T Consensus       267 ~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~  330 (656)
T PRK15174        267 LQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence              78999998873        46677899999999999999999999999998753        3444567889999999


Q ss_pred             hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          325 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       325 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      .|+++ +|+..|++++..        +|........+|.++...|++++|+..|+++++..++.
T Consensus       331 ~G~~~-eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        331 VGQYT-AASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             CCCHH-HHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            99999 999999998864        23334456667889999999999999999999987663

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=2.5e-26  Score=207.10  Aligned_cols=281  Identities=12%  Similarity=-0.018  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+..+...|..++..|+|++|+..|++++.+.        |+ ...+.++|.+|..+|++++|+..+.+++++       
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------  189 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVVEDTTAALEL-------  189 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence            45567889999999999999999999999762        22 457899999999999999999999999986       


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------------------------
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--------------------------------------------  172 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------------------------------  172 (394)
                       +|....++..+|.+|..+|++++|+..+..+..+.                                            
T Consensus       190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~  268 (615)
T TIGR00990       190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL  268 (615)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence             45566789999999999999999987654432110                                            


Q ss_pred             -------------------------------------------------HhcccCCCchHHHHHHHHHHHHHHHHcCChH
Q 016124          173 -------------------------------------------------KDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  203 (394)
Q Consensus       173 -------------------------------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  203 (394)
                                                                       ......+...+....++..+|.++...|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~  348 (615)
T TIGR00990       269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL  348 (615)
T ss_pred             HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence                                                             0000000012333456677888888899999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124          204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       204 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  283 (394)
                      +|+..+++++.+        +|....++..+|.++...|++++|+..+++++++        .|....++..+|.++...
T Consensus       349 eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       349 EALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence            999999988874        4666778889999999999999999999998873        355667888999999999


Q ss_pred             cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 016124          284 NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS  363 (394)
Q Consensus       284 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  363 (394)
                      |++++|+..|++++.+.        |.....+..+|.++...|+++ +|+..+++++..        .|....++..+|.
T Consensus       413 g~~~~A~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~--------~P~~~~~~~~lg~  475 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDLD--------PDFIFSHIQLGVTQYKEGSIA-SSMATFRRCKKN--------FPEAPDVYNYYGE  475 (615)
T ss_pred             CCHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCChHHHHHHHH
Confidence            99999999999998753        444566888999999999999 999999999874        2444567888999


Q ss_pred             HHHHhcCchhhhhhHHHHHHHHHH
Q 016124          364 YLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       364 ~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ++...|++++|+..|++++.+.++
T Consensus       476 ~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       476 LLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999988654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-25  Score=175.73  Aligned_cols=332  Identities=16%  Similarity=0.106  Sum_probs=270.0

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..-|.-+++.|++...+.+|+.|++.-..    +-.....+|..+|+.|+..++|.+|+++...-+.+.+.+.  +...-
T Consensus        21 alEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGE   94 (639)
T KOG1130|consen   21 ALEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGE   94 (639)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhcc
Confidence            34577789999999999999999987422    2345667789999999999999999999888777766654  34445


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC--------------------HH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AE  159 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~  159 (394)
                      +.+..+||.++...|.|++|+.+..+-+.+.+...  +......+++++|.+|...|+                    ++
T Consensus        95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~  172 (639)
T KOG1130|consen   95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE  172 (639)
T ss_pred             ccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence            67788999999999999999999999999988763  455677899999999998775                    34


Q ss_pred             HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          160 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       160 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                      .|.++|..-+++.++.    .+......++.++|..|+.+|+|+.|+...+.-+.+.++..  +....-.++.++|.++.
T Consensus       173 ~Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hi  246 (639)
T KOG1130|consen  173 NAVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHI  246 (639)
T ss_pred             HHHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhh
Confidence            5666777767666653    45556678889999999999999999999999999988765  33445568889999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      -.|+++.|+++|+..+.+..+.  .+....+...+.||..|.-..++.+|+.++.+-+.+.++.  .+......+++.||
T Consensus       247 flg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLg  322 (639)
T KOG1130|consen  247 FLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLG  322 (639)
T ss_pred             hhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHH
Confidence            9999999999999999988776  3445567778899999999999999999999999999887  45555678899999


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCch
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  372 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  372 (394)
                      ..+...|..+ +|+.+.++.+++..++..+.  ....+..+|...-...|..+
T Consensus       323 na~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  323 NAFNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCc
Confidence            9999999999 99999999999888764332  23455666777666666644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=2.4e-25  Score=212.59  Aligned_cols=309  Identities=18%  Similarity=0.141  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |.....+..++..+...|++++|+..+++++...        |.....+..+|.++...|++++|+..|+++++.     
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----  630 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----  630 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            3444556677777777777777777777766531        222345667777777777777777777777654     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         .|....++..+|.++...|++++|...+++++..        .|....++..++.++...|++++|..+++.+.+..
T Consensus       631 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  699 (899)
T TIGR02917       631 ---QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH  699 (899)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence               2334456667777777777777777777777654        12222334444455555555555555544443321


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh--------------------------hCCCCcc
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY--------------------------KGKEHPS  226 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~~  226 (394)
                             +..+   ..+..+|.++...|++++|+..+++++......                          . ...|.
T Consensus       700 -------~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~  768 (899)
T TIGR02917       700 -------PKAA---LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPN  768 (899)
T ss_pred             -------cCCh---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC
Confidence                   1111   122334444444444444444444444321000                          0 01223


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                      ...++..+|.++...|++++|+..|+++++.        .|....++..++.++...|+ .+|+.++++++...     +
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~  834 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P  834 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence            3344555555555555555555555555442        23334444555555555555 44555555554432     2


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          307 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      +++   ..+..+|.++...|+++ +|+.+++++++..        |....++..++.++...|++++|..++++++
T Consensus       835 ~~~---~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       835 NIP---AILDTLGWLLVEKGEAD-RALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCc---HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            222   23445555555555555 5555555555421        1123445555555555566665555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=3.2e-25  Score=212.43  Aligned_cols=326  Identities=13%  Similarity=0.095  Sum_probs=234.6

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      .+|....++..+|.++...|++++|+.+|+++++...........      ........+|.++...|++++|+..|+++
T Consensus       298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345566788999999999999999999999999864221000000      01123345688899999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHH-----------------------
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-----------------------  141 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------------------  141 (394)
                      +..        .|....++..+|.++...|++++|+..|++++++..     +++..                       
T Consensus       378 l~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        378 RQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----GNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            987        455567888999999999999999999999987621     11110                       


Q ss_pred             ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHH
Q 016124          142 ----------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG  205 (394)
Q Consensus       142 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  205 (394)
                                      ...+..+|.++...|++++|+..|++++++.       |+.+   .++..+|.+|...|++++|
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~---~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSV---WLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCH---HHHHHHHHHHHHcCCHHHH
Confidence                            1123456777888999999999999999853       3433   3458899999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---------------------H------
Q 016124          206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI---------------------M------  258 (394)
Q Consensus       206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------------------~------  258 (394)
                      +..+++++..        .|.....+..++..+...+++++|+..++++...                     .      
T Consensus       515 ~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        515 DALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            9999998864        3344445556666666667777776665542100                     0      


Q ss_pred             ------HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          259 ------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       259 ------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                            ...+ ..+|.....+..+|.++...|++++|+..|++++...        |....++..++.++...|+++ +|
T Consensus       587 G~~~eA~~~l-~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~-eA  656 (1157)
T PRK11447        587 GKEAEAEALL-RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLA-AA  656 (1157)
T ss_pred             CCHHHHHHHH-HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HH
Confidence                  0000 0234555677889999999999999999999988753        334457788888888888888 88


Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      +..++++++.        .|+...++..+|.++...|++++|..+|++++...
T Consensus       657 ~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        657 RAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            8888876642        23334556667778888888888888888877653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=9.1e-25  Score=196.32  Aligned_cols=302  Identities=10%  Similarity=0.023  Sum_probs=246.7

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +...+......|++++|...++..+..        .|....++..+|.+....|++++|+..+++++..        +|.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~  108 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVC  108 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCC
Confidence            345566778899999999999998875        3445667888999999999999999999999987        566


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...++..+|.++...|++++|+..+++++.+        .|....++..++.++...|++++|+..+.+++...      
T Consensus       109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~------  174 (656)
T PRK15174        109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV------  174 (656)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------
Confidence            6788999999999999999999999999986        34455678889999999999999999999877642      


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                       ++++..   +..+ ..+...|++++|+..+++++...       .+........++.++...|++++|+..+++++.. 
T Consensus       175 -P~~~~a---~~~~-~~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-  241 (656)
T PRK15174        175 -PPRGDM---IATC-LSFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-  241 (656)
T ss_pred             -CCCHHH---HHHH-HHHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence             333332   2233 34788999999999999876541       1122233456788899999999999999999873 


Q ss_pred             HhhcCCCCCcchHHHHHHHHHHHhhcChHH----HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124          259 TKTVGPDDQSISFPMLHLGITLYHLNRDKE----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  334 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~  334 (394)
                             +|....++..+|.++...|++++    |+..+++++...        |....++..+|.++...|+++ +|+.
T Consensus       242 -------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~-eA~~  305 (656)
T PRK15174        242 -------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNE-KAIP  305 (656)
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHH-HHHH
Confidence                   46667888999999999999986    788999888754        455678899999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          335 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       335 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .+++++..        +|+...++..+|.++...|++++|+..|++++...+.
T Consensus       306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99999975        2344567788999999999999999999999876554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=4.8e-24  Score=183.22  Aligned_cols=308  Identities=17%  Similarity=0.161  Sum_probs=239.9

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      .+..|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++..    .......
T Consensus        38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~  105 (389)
T PRK11788         38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTREQ  105 (389)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHHH
Confidence            456788899999999999999999985        2445677889999999999999999999988753    1111122


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...++..+|.+|...|++++|+..|.++++.        .+....++..++.++...|++++|+..++++++...     
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----  172 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-----  172 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence            3467889999999999999999999998864        344456788999999999999999999999887532     


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                      .+........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..+++++.. 
T Consensus       173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  243 (389)
T PRK11788        173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-  243 (389)
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            1222234455678999999999999999999999875        2445567889999999999999999999999873 


Q ss_pred             HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                            +......++..++.+|...|++++|...+++++...     |+.    ..+..++.++...|+++ +|+..+++
T Consensus       244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~  307 (389)
T PRK11788        244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE  307 (389)
T ss_pred             ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence                  112234567889999999999999999999987752     332    23478999999999999 99999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHH--HhcCchhhhhhHHHHHHH
Q 016124          339 VLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       339 al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~  384 (394)
                      +++.        .|+.......++..+.  ..|+..+|+..+++.+..
T Consensus       308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            9875        2333333323333322  256899999999988753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=3.5e-24  Score=205.31  Aligned_cols=318  Identities=16%  Similarity=0.125  Sum_probs=240.4

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch-
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-   99 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-   99 (394)
                      .+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+.+|+++++..     ++.+.. 
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~  340 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD  340 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence            45888999999999999999999862        3345678999999999999999999999999863     222211 


Q ss_pred             ----------HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124          100 ----------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus       100 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                                ......+|.++...|++++|+..|++++..        +|....++..+|.++...|++++|+..|++++
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                      123345688899999999999999999987        33445678899999999999999999999999


Q ss_pred             HHHHhccc---------CCCc-----------------------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          170 RVIKDSNY---------MSLD-----------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       170 ~~~~~~~~---------~~~~-----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      ++......         ....                       .......+..+|.++...|++++|+..++++++.  
T Consensus       413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--  490 (1157)
T PRK11447        413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--  490 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            86422100         0000                       0000122345677888899999999999999875  


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                            .|....++..+|.++...|++++|+..+++++..        .|.....++.++..+...|++++|+..++++.
T Consensus       491 ------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~  556 (1157)
T PRK11447        491 ------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP  556 (1157)
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence                  4566678899999999999999999999998873        34455566677777777788877777765431


Q ss_pred             HH---------------------H------------HHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124          298 YI---------------------R------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       298 ~~---------------------~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~  344 (394)
                      ..                     .            ...+. .+|.....+..+|.++...|+++ +|+..|+++++.  
T Consensus       557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~-~A~~~y~~al~~--  632 (1157)
T PRK11447        557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYA-AARAAYQRVLTR--  632 (1157)
T ss_pred             chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--
Confidence            10                     0            00000 12333456788999999999999 999999999974  


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          345 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       345 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                            .|+...++..++.++...|++++|+..+++++...
T Consensus       633 ------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~  667 (1157)
T PRK11447        633 ------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA  667 (1157)
T ss_pred             ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence                  34456788999999999999999999999887653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=1.1e-24  Score=208.03  Aligned_cols=316  Identities=19%  Similarity=0.197  Sum_probs=234.8

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..|....++..++.++...|++++|+.++++++...        |.....+..++..+...|++++|+..+++++..   
T Consensus       528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  596 (899)
T TIGR02917       528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA---  596 (899)
T ss_pred             hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence            345566778899999999999999999999998752        333456778999999999999999999998764   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           .|.....+..+|.++...|++++|+..|+++++.        .|....++..++.++...|++++|...++++++
T Consensus       597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                 3445678899999999999999999999999875        233345778899999999999999999999998


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  250 (394)
                      ..       |+.   ..++..++.++...|++++|+.+++.....        .|.....+..+|.++...|++++|+..
T Consensus       664 ~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~  725 (899)
T TIGR02917       664 LK-------PDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQA  725 (899)
T ss_pred             cC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence            53       232   235578999999999999999999887653        233445566677777777777777777


Q ss_pred             HHHHHHHHH--------------------------hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          251 LRICLDIMT--------------------------KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       251 ~~~a~~~~~--------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      |++++....                          +.. ...|....++..+|.++...|++++|+..|+++++..    
T Consensus       726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----  800 (899)
T TIGR02917       726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA----  800 (899)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence            777665310                          000 0134445556666666666666666666666666532    


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                          |....++..++.++...|+ . +|+.++++++++     .+++   ..++..+|.++...|++++|..+|++++++
T Consensus       801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKL-----APNI---PAILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2334456667777777776 5 677777777654     1233   345667888899999999999999999887


Q ss_pred             HHH
Q 016124          385 RMK  387 (394)
Q Consensus       385 ~~~  387 (394)
                      .+.
T Consensus       867 ~~~  869 (899)
T TIGR02917       867 APE  869 (899)
T ss_pred             CCC
Confidence            553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.9e-23  Score=165.89  Aligned_cols=330  Identities=16%  Similarity=0.145  Sum_probs=216.0

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      ...+..+-+.|+-++..|+|++|+.+|.+|++++.     +.   ...|.+++.+|...|+|++.++...+++++     
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~e---piFYsNraAcY~~lgd~~~Vied~TkALEl-----  178 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DE---PIFYSNRAACYESLGDWEKVIEDCTKALEL-----  178 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence            34567788999999999999999999999999852     22   445889999999999999999999999997     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHH------------------HHHHH-----HHHhhCC-------------
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFS------------------RILKI-----YTKVYGE-------------  136 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-------------  136 (394)
                         +|....+++..+..+..+|++++|+.-..                  +.+..     ....+..             
T Consensus       179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~  255 (606)
T KOG0547|consen  179 ---NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA  255 (606)
T ss_pred             ---CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence               78889999999999999999998875432                  11110     0000000             


Q ss_pred             ---------------------------------------------------------------C--chHHHHHHHHHHHH
Q 016124          137 ---------------------------------------------------------------N--DGRVGMAMCSLAHA  151 (394)
Q Consensus       137 ---------------------------------------------------------------~--~~~~~~~~~~la~~  151 (394)
                                                                                     +  -...+.++...|..
T Consensus       256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence                                                                           0  00123345555666


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      ++-.|++-.|...+++++.+....          ...|..+|.+|....+.++-...|++|..+        +|....+|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvY  397 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAF----------NSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVY  397 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCccc----------chHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchh
Confidence            667777777777777777754321          111455566666666666666666666553        34444456


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  311 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  311 (394)
                      +..|.++.-.+++++|+.-|++++.+        .|..+..+..++.+..++++++++...|+++...+        |..
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~  461 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNC  461 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCC
Confidence            66666666666666666666666553        34444455555555555555555555555555433        233


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC---------------------------------CCCHHHHHHH
Q 016124          312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG---------------------------------SESEEVMLTL  358 (394)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~  358 (394)
                      ..++...|.++..+++++ +|++.|.+++++-....+                                 .-+|..-.++
T Consensus       462 ~Evy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~  540 (606)
T KOG0547|consen  462 PEVYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY  540 (606)
T ss_pred             chHHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence            334445555555555555 555555555443322000                                 1245556778


Q ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhhc
Q 016124          359 KKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ  393 (394)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  393 (394)
                      ..||.+..++|+.++|+++|+++..+.+...+++|
T Consensus       541 ~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~  575 (606)
T KOG0547|consen  541 ETLAQFELQRGKIDEAIELFEKSAQLARTESEMVH  575 (606)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88999999999999999999999999998888765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=4.1e-24  Score=168.73  Aligned_cols=306  Identities=14%  Similarity=0.109  Sum_probs=251.4

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      |.-+++.|++...+.+|+.|++.-.    .+-.....+|..||..|+.+++|++|+++-..-+.+.+.+.  +....+.+
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKs   97 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKS   97 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccc
Confidence            6778899999999999999998732    23445667899999999999999999999887776655542  33445667


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC--------------------hHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR--------------------GQE  204 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~  204 (394)
                      ..++|.++-..|.|++|+.+..+-+.+.++.    .+...-..+++++|.+|...|+                    ++.
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areL----gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFAREL----GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHH----hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            7899999999999999999999999998875    4556667889999999998875                    345


Q ss_pred             HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124          205 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  284 (394)
Q Consensus       205 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  284 (394)
                      |.++|.+-+++.++..  +......++-+||..|...|+|+.|+...+.-+.+.++.  .+.....+++.++|.++.-.|
T Consensus       174 Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhc
Confidence            6666666666665544  333456688899999999999999999999999887776  344455678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 016124          285 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  364 (394)
Q Consensus       285 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  364 (394)
                      +++.|+++|+..+.+..++  .+....+...+.||..|.-..+++ +|+.++++-+.|.+++-  +......++..||..
T Consensus       250 ~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~-kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna  324 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQ-KAITYHQRHLAIAQELE--DRIGELRACWSLGNA  324 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHH
Confidence            9999999999999988876  444556788899999999999999 99999999999998862  334557788999999


Q ss_pred             HHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          365 LDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       365 ~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      +...|..++|+.+.++.+.+..+..
T Consensus       325 ~~alg~h~kAl~fae~hl~~s~ev~  349 (639)
T KOG1130|consen  325 FNALGEHRKALYFAELHLRSSLEVN  349 (639)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999988877654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-23  Score=175.56  Aligned_cols=308  Identities=16%  Similarity=0.146  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           14 LLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      .....+..+|..|....  +..+|+..|.+ +       ...++....++..+|..|+.+++|++|..+|+.+...    
T Consensus       315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~----  382 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI----  382 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            45566777777766544  34566666665 2       2234556688999999999999999999999988765    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHH-HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVF-SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                          .|....-.-....+++++.+-- ++.++ +..++        .++....+|..+|.+|..+++++.|+++|++|++
T Consensus       383 ----~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ  449 (638)
T KOG1126|consen  383 ----EPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ  449 (638)
T ss_pred             ----ccccccchhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence                2333333333344444444322 22222 22222        2444556777888888888888888888888877


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  250 (394)
                      +.+          ..+.+|..+|.-+.....+|+|..+|+.|+.+        +|..-.+|+.+|.+|.++++++.|+-+
T Consensus       450 ldp----------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  450 LDP----------RFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             cCC----------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHH
Confidence            532          12445566777777777888888888888764        455567788888888888888888888


Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124          251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  330 (394)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  330 (394)
                      |++|+++        .|........+|.++.+.|+.++|+.++++|+.+.     +.+   .-..+..+.++...++++ 
T Consensus       512 fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn---~l~~~~~~~il~~~~~~~-  574 (638)
T KOG1126|consen  512 FQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKN---PLCKYHRASILFSLGRYV-  574 (638)
T ss_pred             HHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCC---chhHHHHHHHHHhhcchH-
Confidence            8888774        46666667778888888888888888888887643     222   234667778888888888 


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          331 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       331 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      +|+..+++..++        .|+...++..+|.+|.+.|+.+.|+..|--|.++.++-.
T Consensus       575 eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  575 EALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            887777776554        356677778888888888888888888887777766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=3e-22  Score=172.11  Aligned_cols=279  Identities=16%  Similarity=0.109  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      ..+..|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++...    .....
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~  104 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE  104 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence            4556688889999999999999999885        45567788999999999999999999999887631    11122


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ....++..+|.+|...|++++|+..|+++++.       .+.   ...++..++.++...|++++|+..+++++..... 
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-  173 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------GDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-  173 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Ccc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence            34467889999999999999999999998863       122   2345688999999999999999999998764210 


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                        +........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..+++++..
T Consensus       174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence              111123445678999999999999999999999874        3455678889999999999999999999999864


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHH
Q 016124          300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK  379 (394)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  379 (394)
                      .     +  .....++..++.++...|+++ +|...++++++..     ++.    .....++.++...|++++|...++
T Consensus       244 ~-----p--~~~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        244 D-----P--EYLSEVLPKLMECYQALGDEA-EGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             C-----h--hhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHHHH
Confidence            2     1  223456778999999999999 9999999988752     222    233788999999999999999999


Q ss_pred             HHHHHHHHH
Q 016124          380 RLSNLRMKY  388 (394)
Q Consensus       380 ~a~~~~~~~  388 (394)
                      +++...++.
T Consensus       307 ~~l~~~P~~  315 (389)
T PRK11788        307 EQLRRHPSL  315 (389)
T ss_pred             HHHHhCcCH
Confidence            999876654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.2e-23  Score=175.70  Aligned_cols=277  Identities=19%  Similarity=0.173  Sum_probs=224.4

Q ss_pred             ccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124            7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus         7 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .+...+++...++..+|..|+.+++|++|..+|+.+-+..        |..+.-.-....+++...+-- ++.++-+-+ 
T Consensus       344 klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~--------p~rv~~meiyST~LWHLq~~v-~Ls~Laq~L-  413 (638)
T KOG1126|consen  344 KLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE--------PYRVKGMEIYSTTLWHLQDEV-ALSYLAQDL-  413 (638)
T ss_pred             hhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cccccchhHHHHHHHHHHhhH-HHHHHHHHH-
Confidence            3566677778889999999999999999999999887652        333333333334444433322 222222211 


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  166 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  166 (394)
                            -..++..+.+|..+|.||..+++++.|+++|++|+++        +|..+.++..+|.-+.....+|.|..+|+
T Consensus       414 ------i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr  479 (638)
T KOG1126|consen  414 ------IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFR  479 (638)
T ss_pred             ------HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence                  1236677889999999999999999999999999987        67778899999999999999999999999


Q ss_pred             HHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH
Q 016124          167 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE  246 (394)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  246 (394)
                      .|+.+..+          -..+|+.+|.+|.++++++.|+-+|++|+++        +|........+|.++.+.|+.++
T Consensus       480 ~Al~~~~r----------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~  541 (638)
T KOG1126|consen  480 KALGVDPR----------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDK  541 (638)
T ss_pred             hhhcCCch----------hhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhH
Confidence            99985322          2567899999999999999999999999986        57777788899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 016124          247 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  326 (394)
Q Consensus       247 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  326 (394)
                      |+.++++|+.+        +|...-+.+..|.++...+++++|+..+++..++.        |+...++..+|.+|.+.|
T Consensus       542 AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  542 ALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLG  605 (638)
T ss_pred             HHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHc
Confidence            99999999884        45556677889999999999999999999887755        667778999999999999


Q ss_pred             CCchHHHHHHHHHHHH
Q 016124          327 EDDTKLLELLKRVLRI  342 (394)
Q Consensus       327 ~~~~~A~~~~~~al~~  342 (394)
                      +.+ .|+..|.=|.++
T Consensus       606 ~~~-~Al~~f~~A~~l  620 (638)
T KOG1126|consen  606 NTD-LALLHFSWALDL  620 (638)
T ss_pred             cch-HHHHhhHHHhcC
Confidence            999 999888877764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.3e-21  Score=170.10  Aligned_cols=339  Identities=18%  Similarity=0.157  Sum_probs=234.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      +...+|...-.+...|.+.+..|+|..|+.+|++++.+.+..       .+.....+|.|+..+|+.+.|+..|++++++
T Consensus       156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~-------~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL  228 (1018)
T KOG2002|consen  156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC-------KADVRIGIGHCFWKLGMSEKALLAFERALQL  228 (1018)
T ss_pred             HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc-------CCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence            344566666777888899999999999999999998875432       1223445677888888888888888888775


Q ss_pred             HHHhc-----------------------------CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           88 LELNR-----------------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        88 ~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      -....                             -...+..+.+++.|+.-++..|+|..+..+...++...     ...
T Consensus       229 dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~  303 (1018)
T KOG2002|consen  229 DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENK  303 (1018)
T ss_pred             ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhh
Confidence            21110                             01123344556666666677777777776666666542     123


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +..+..++.+|.+|..+|+|++|..+|.+++...       ++.  ..-.+..+|.+|...|+++.|..+|++.+..   
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---  371 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---  371 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh---
Confidence            4555667777777777777777777777776632       222  1223466777777777777777777776653   


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSK----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                           .|+...++..||.+|...+    ..+.|..+..+++.        ..|....+|..++.++....-+ .++..|.
T Consensus       372 -----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--------~~~~d~~a~l~laql~e~~d~~-~sL~~~~  437 (1018)
T KOG2002|consen  372 -----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--------QTPVDSEAWLELAQLLEQTDPW-ASLDAYG  437 (1018)
T ss_pred             -----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHhcChH-HHHHHHH
Confidence                 3555556666777776664    34555555555554        2366778888999887765544 4499999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhcCch
Q 016124          295 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES--EEVMLTLKKVVSYLDKLGRKE  372 (394)
Q Consensus       295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~  372 (394)
                      .|+.+......+   -....++++|..++..|++. +|...|.+|+.........+.  .......+++|+++...++++
T Consensus       438 ~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~-~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~  513 (1018)
T KOG2002|consen  438 NALDILESKGKQ---IPPEVLNNVASLHFRLGNIE-KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE  513 (1018)
T ss_pred             HHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChH-HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence            999988876544   23457999999999999999 999999999988554333222  123556899999999999999


Q ss_pred             hhhhhHHHHHHHHHHH
Q 016124          373 EKFPLKKRLSNLRMKY  388 (394)
Q Consensus       373 ~A~~~~~~a~~~~~~~  388 (394)
                      .|.+.|..++...+.+
T Consensus       514 ~A~e~Yk~Ilkehp~Y  529 (1018)
T KOG2002|consen  514 VAEEMYKSILKEHPGY  529 (1018)
T ss_pred             HHHHHHHHHHHHCchh
Confidence            9999999998876654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=1.2e-21  Score=180.01  Aligned_cols=327  Identities=11%  Similarity=-0.035  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ..++..++.++...|++++|+..+++++..        .|.... +..+|.++...|++++|+..++++++.        
T Consensus        83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------  145 (765)
T PRK10049         83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------  145 (765)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            344556666666666666666666666654        122333 667788888888888888888888876        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHH---------------------------------------HHHHHHHhhC-
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVYG-  135 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~-  135 (394)
                      .|....++..++.++...|..++|+..+++                                       |+..++.... 
T Consensus       146 ~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~  225 (765)
T PRK10049        146 APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL  225 (765)
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence            455556666778888777777766655542                                       2222222110 


Q ss_pred             -CC----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124          136 -EN----DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  210 (394)
Q Consensus       136 -~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (394)
                       +.    .+....+.......+...|++++|+..|+++++.       ++..|....  ..+|.+|...|++++|+..|+
T Consensus       226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~  296 (765)
T PRK10049        226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSILT  296 (765)
T ss_pred             cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHH
Confidence             11    1222233333222346779999999999998764       122122222  336889999999999999999


Q ss_pred             HHHHHHHHhhCCCC-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh---c--CCCCCc--chHHHHHHHHHHHh
Q 016124          211 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGITLYH  282 (394)
Q Consensus       211 ~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~--~~~~~~--~~~~~~~la~~~~~  282 (394)
                      +++..     .+.. +........++.++...|++++|+..++++.......   .  ....|.  ...++..++.++..
T Consensus       297 ~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~  371 (765)
T PRK10049        297 ELFYH-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY  371 (765)
T ss_pred             HHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence            98753     1111 1123456677888899999999999999888742110   0  011222  24567789999999


Q ss_pred             hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124          283 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  362 (394)
Q Consensus       283 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  362 (394)
                      .|++++|+..+++++...        |.....+..+|.++...|+++ +|+..+++++.+        .|+....+..+|
T Consensus       372 ~g~~~eA~~~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~~~a  434 (765)
T PRK10049        372 SNDLPQAEMRARELAYNA--------PGNQGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEVEQA  434 (765)
T ss_pred             cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHHHHH
Confidence            999999999999998754        444568899999999999999 999999999975        355566888899


Q ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124          363 SYLDKLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       363 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                      .++...|++++|...++++++..++...
T Consensus       435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        435 WTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999988766544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=1.7e-21  Score=179.04  Aligned_cols=331  Identities=12%  Similarity=0.041  Sum_probs=239.8

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|..+.++..+|..+...|++++|+..+++++...        |....+...++.++...|++++|+..+++++..    
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----  112 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----  112 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            45556678899999999999999999999999862        233445678999999999999999999999886    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA---  168 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---  168 (394)
                          .|.... +..+|.++...|++++|+..++++++.        .|....++..++.++...|..++|+..++++   
T Consensus       113 ----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~  179 (765)
T PRK10049        113 ----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT  179 (765)
T ss_pred             ----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence                455556 888999999999999999999999987        3333445566777777777777766555521   


Q ss_pred             ------------------------------------HHHHHhcc---cCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124          169 ------------------------------------LRVIKDSN---YMSLD-DSIMENMRIDLAELLHIVGRGQEGREL  208 (394)
Q Consensus       169 ------------------------------------~~~~~~~~---~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  208 (394)
                                                          ++.++...   ...++ .+....+.......+...|++++|+..
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                                11111100   00111 122233333322344677999999999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChH
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDK  287 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~  287 (394)
                      |++++..     ++..|.....  .+|.+|...|++++|+..|++++..     .+..+ ........++.++...|+++
T Consensus       260 ~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        260 YQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHH
Confidence            9997754     1223444333  3688999999999999999998762     11121 12345567788889999999


Q ss_pred             HHHHHHHHHHHHHHHH---c--CCCCh--hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 016124          288 EAEKLVLEALYIREIA---F--GKDSL--PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK  360 (394)
Q Consensus       288 ~A~~~~~~a~~~~~~~---~--~~~~~--~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  360 (394)
                      +|+..++++.......   .  ...+|  ........++.++...|+.+ +|++.+++++..        .|.....+..
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~-eA~~~l~~al~~--------~P~n~~l~~~  398 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP-QAEMRARELAYN--------APGNQGLRID  398 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHH
Confidence            9999999887643100   0  00112  23456778999999999999 999999999864        3444678899


Q ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          361 VVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       361 la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +|.++...|++++|+..+++++.+.+..
T Consensus       399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        399 YASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.1e-20  Score=162.75  Aligned_cols=321  Identities=18%  Similarity=0.151  Sum_probs=252.1

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ++..+.++..|+..|+..|+|..+..+...++...     ...+..+..++.+|.+|..+|+|++|..+|.+++..    
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----  336 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----  336 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----
Confidence            34445668889999999999999999999988764     234677889999999999999999999999999876    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC----CHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG----NAEEAVELYKK  167 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~  167 (394)
                         ++....-.+..+|.++...|+++.|..+|++.+..        .|....++..+|.+|...+    .-+.|..+..+
T Consensus       337 ---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  337 ---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             ---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence               22234667889999999999999999999999876        3555567777888888775    55677777777


Q ss_pred             HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124          168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  247 (394)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  247 (394)
                      ++...          +.-..++..++.++... +...++..|..|+.+.......   .-...++++|..++..|++.+|
T Consensus       406 ~~~~~----------~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A  471 (1018)
T KOG2002|consen  406 VLEQT----------PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKA  471 (1018)
T ss_pred             HHhcc----------cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHH
Confidence            76642          22356678888887655 4555599999999888776543   3356789999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          248 ERLLRICLDIMTKTVGPDD--QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      ...|..++.........+.  .......+++|.++...++++.|.+.|...+.        .||....++..+|......
T Consensus       472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k  543 (1018)
T KOG2002|consen  472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDK  543 (1018)
T ss_pred             HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhc
Confidence            9999999987554332222  12345678999999999999999999998876        5688889999999777777


Q ss_pred             CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          326 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       326 g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      ++.. +|...+..++.+-     ..+   +.++.-+|.++....++.-|..-|+..+.
T Consensus       544 ~~~~-ea~~~lk~~l~~d-----~~n---p~arsl~G~~~l~k~~~~~a~k~f~~i~~  592 (1018)
T KOG2002|consen  544 NNLY-EASLLLKDALNID-----SSN---PNARSLLGNLHLKKSEWKPAKKKFETILK  592 (1018)
T ss_pred             cCcH-HHHHHHHHHHhcc-----cCC---cHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence            7787 9999999998752     223   44566678888888888888886666543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=3.2e-21  Score=177.66  Aligned_cols=292  Identities=9%  Similarity=-0.040  Sum_probs=229.1

Q ss_pred             CCchH--HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           10 DDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        10 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      +..|.  .+.+++.+|.++.. +++.+|+..+.+++...     ++.    .....+|..+...|++++|+..|+++...
T Consensus       469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~  538 (987)
T PRK09782        469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQKISLH  538 (987)
T ss_pred             ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            34455  77789999999987 89999999999988763     221    13556677788999999999999986442


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  167 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  167 (394)
                              .+. ...+..+|.++...|++++|+.++++++..        .|........++......|++++|+..+++
T Consensus       539 --------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~  601 (987)
T PRK09782        539 --------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTR  601 (987)
T ss_pred             --------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                    111 234678899999999999999999999875        233334445566666778999999999999


Q ss_pred             HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124          168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  247 (394)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  247 (394)
                      ++++.       |+    ...+.++|.++...|++++|+..+++++..        .|....++.++|.++...|++++|
T Consensus       602 AL~l~-------P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        602 SLNIA-------PS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHhC-------CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            99852       32    346789999999999999999999999985        567778999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124          248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  327 (394)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  327 (394)
                      +..+++++++        .|....++.++|.++...|++++|+..++++++..        |..+.+....|.+.....+
T Consensus       663 i~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        663 REMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQRFN  726 (987)
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHH
Confidence            9999999984        56777899999999999999999999999999754        5556667778888877777


Q ss_pred             CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124          328 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  373 (394)
Q Consensus       328 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  373 (394)
                      +. .|.+.+.++..+.        |... +-...|.++...+++-.
T Consensus       727 ~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~~  762 (987)
T PRK09782        727 FR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVGG  762 (987)
T ss_pred             HH-HHHHHHHHHhhcC--------ccch-hccccchHhhhcccccC
Confidence            77 7777777766532        2222 55566667776666543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.1e-20  Score=148.96  Aligned_cols=303  Identities=15%  Similarity=0.124  Sum_probs=225.8

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh
Q 016124           22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  101 (394)
Q Consensus        22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  101 (394)
                      ++.+|....+.++++.-++....+       .-|.....-...|.+.....++++|+..|+..+..        +|....
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~  297 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLD  297 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcch
Confidence            444555555555555555444333       11222333445677788888888888888876653        343333


Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      -+....++++-..+-.+---+.+.+..+        +.-...++..+|+-|...++.++|+.+|++|+++.++       
T Consensus       298 dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-------  362 (559)
T KOG1155|consen  298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-------  362 (559)
T ss_pred             hHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-------
Confidence            3334444444444433322222333332        1222345677899999999999999999999996432       


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                         ...++..+|.-|..+.+...|++.|+.|+++        .|..-.+|+.||+.|.-++-+.=|+-+|++|...    
T Consensus       363 ---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----  427 (559)
T KOG1155|consen  363 ---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----  427 (559)
T ss_pred             ---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----
Confidence               3567788999999999999999999999997        4666789999999999999999999999999984    


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                          .|...+.|..||.||.+.++.++|+++|.+++...      +.  ...++..||.+|.+.++.+ +|..+|++.++
T Consensus       428 ----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dt--e~~~l~~LakLye~l~d~~-eAa~~yek~v~  494 (559)
T KOG1155|consen  428 ----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DT--EGSALVRLAKLYEELKDLN-EAAQYYEKYVE  494 (559)
T ss_pred             ----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------cc--chHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence                46667888999999999999999999999998743      11  3467899999999999999 99999999998


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          342 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      .. ...|...|.+..+...|+..+.+.+++++|..+..+++.
T Consensus       495 ~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  495 VS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            76 345667788888888899999999999999887665554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=8.8e-21  Score=174.78  Aligned_cols=267  Identities=15%  Similarity=0.044  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      ...++..+|.++.. |++.+|+..+.+++...        |.. .....+|..+...|++++|+..++++...     .+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p  540 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH-----DM  540 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CC
Confidence            66789999999987 89999999999988762        222 23556677778999999999999987543     11


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                      .    ...+..+|.++...|++++|+.+++++++..       ++..   ..+..++......|++++|+..+++++.. 
T Consensus       541 ~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~---~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-  605 (987)
T PRK09782        541 S----NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDN---ALYWWLHAQRYIPGQPELALNDLTRSLNI-  605 (987)
T ss_pred             C----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence            1    1235788999999999999999999998742       2222   22344566666779999999999999975 


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                             .|. ...+.++|.++.+.|++++|+..+++++.+        .|....++.++|.++...|++++|+..++++
T Consensus       606 -------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A  669 (987)
T PRK09782        606 -------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSREMLERA  669 (987)
T ss_pred             -------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                   344 678899999999999999999999999984        5777789999999999999999999999999


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhh
Q 016124          297 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  376 (394)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  376 (394)
                      ++..        |....++.++|.++...|+++ +|+..+++++++        .|+...+....|.+.....++..|.+
T Consensus       670 L~l~--------P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        670 HKGL--------PDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            9854        445568999999999999999 999999999975        35667777888999999999999999


Q ss_pred             hHHHHHHHHH
Q 016124          377 LKKRLSNLRM  386 (394)
Q Consensus       377 ~~~~a~~~~~  386 (394)
                      .+.+...+..
T Consensus       733 ~~~r~~~~~~  742 (987)
T PRK09782        733 EVGRRWTFSF  742 (987)
T ss_pred             HHHHHhhcCc
Confidence            8888876543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.3e-20  Score=148.82  Aligned_cols=273  Identities=14%  Similarity=0.104  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ..-...|.+.+.+.++++|+..|+...+.        +|....-+...+++++-..+-.+---+.+.+..+        +
T Consensus       263 ~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------d  326 (559)
T KOG1155|consen  263 YIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------D  326 (559)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------c
Confidence            33456788899999999999999987653        3444444445556665555433333333333333        3


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .-.+.+...+|+.|...++.++|+.+|++|+.+        +|....++..+|.-|..+.+...|+..|++|+++.+.. 
T Consensus       327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-  397 (559)
T KOG1155|consen  327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-  397 (559)
T ss_pred             cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence            344567778999999999999999999999987        67778899999999999999999999999999975432 


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                               .++|+.+|..|..++-+.=|+-+|++|...        .|.....+..||.+|.+.++.++|+.+|.+++.
T Consensus       398 ---------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  398 ---------YRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             ---------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence                     567899999999999999999999999885        455667888999999999999999999999998


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      .        ......++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.++++ +|-.+.
T Consensus       461 ~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~-~As~Ya  530 (559)
T KOG1155|consen  461 L--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFD-EASYYA  530 (559)
T ss_pred             c--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchH-HHHHHH
Confidence            3        12245688999999999999999999999999876 4445666778888888999999999999 888877


Q ss_pred             HHHHH
Q 016124          337 KRVLR  341 (394)
Q Consensus       337 ~~al~  341 (394)
                      .+++.
T Consensus       531 ~~~~~  535 (559)
T KOG1155|consen  531 TLVLK  535 (559)
T ss_pred             HHHhc
Confidence            77664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.8e-19  Score=148.21  Aligned_cols=275  Identities=17%  Similarity=0.222  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ..++...+..++..++|.+..+.++..++..     +-++...  -..+| ++...|+..+=   |.-+.++.+     .
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~L---f~lsh~LV~-----~  307 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKL---FLLSHKLVD-----L  307 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchH---HHHHHHHHH-----h
Confidence            3456677888889999999888888877752     2222222  23445 67777765544   443434332     3


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .|..+.+|+.+|..|...|++.+|..+|.++-.+        ++..+.+|...|..+...|..++|+..|..|-++... 
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-  378 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-  378 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence            6788889999999999999999999999999876        5777789999999999999999999999999998753 


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                          ..-|.     ..+|.-|...++++-|..+|.+|+.++        |....++..+|.+....+.+.+|..+|+.++
T Consensus       379 ----~hlP~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  379 ----CHLPS-----LYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             ----CcchH-----HHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence                23333     458899999999999999999999873        5555678899999999999999999999999


Q ss_pred             HHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHH
Q 016124          256 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  335 (394)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~  335 (394)
                      ...+... +..+.....+.+||.++...+.+++|+.++++++.+.        |..+.++..+|-+|..+|+.+ .|+++
T Consensus       442 ~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld-~Aid~  511 (611)
T KOG1173|consen  442 EVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLD-KAIDH  511 (611)
T ss_pred             HHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChH-HHHHH
Confidence            6555543 3334566678999999999999999999999999865        555678999999999999999 99999


Q ss_pred             HHHHHHH
Q 016124          336 LKRVLRI  342 (394)
Q Consensus       336 ~~~al~~  342 (394)
                      |.+++.+
T Consensus       512 fhKaL~l  518 (611)
T KOG1173|consen  512 FHKALAL  518 (611)
T ss_pred             HHHHHhc
Confidence            9999975

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.87  E-value=1.5e-18  Score=150.24  Aligned_cols=315  Identities=15%  Similarity=0.104  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...+...|+..+..|++++|...+.+++..        .|....++..||.+|..+|+.+++...+-.|-.+        
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence            455678888999999999999999999886        3666788999999999999999999988777654        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .|.....|..++.....+|++.+|.-+|.+|++.        .|.........+.+|.++|+...|...|.+++....  
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--  272 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--  272 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--
Confidence            3444478889999999999999999999999987        444566778889999999999999999999998753  


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                         ..+...........+..+...++-+.|+..++.++.....      ......+..++.++.....++.|........
T Consensus       273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~  343 (895)
T KOG2076|consen  273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIVDDR  343 (895)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence               1122333333355677888888888999988888773221      1222334566777777777777766654433


Q ss_pred             H----------------------HHHh-------------h---------------------cCCCCCcchHHHHHHHHH
Q 016124          256 D----------------------IMTK-------------T---------------------VGPDDQSISFPMLHLGIT  279 (394)
Q Consensus       256 ~----------------------~~~~-------------~---------------------~~~~~~~~~~~~~~la~~  279 (394)
                      .                      +...             .                     ......+....+..++..
T Consensus       344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a  423 (895)
T KOG2076|consen  344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA  423 (895)
T ss_pred             ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence            3                      0000             0                     000012334557788999


Q ss_pred             HHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 016124          280 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  359 (394)
Q Consensus       280 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  359 (394)
                      +...|++.+|+.++..+...       .....+..|..+|.+|..+|.++ +|+++|++++..        .|+..++..
T Consensus       424 l~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p~~~D~Ri  487 (895)
T KOG2076|consen  424 LTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------APDNLDARI  487 (895)
T ss_pred             HHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CCCchhhhh
Confidence            99999999999999877652       22233668999999999999999 999999999974        466678889


Q ss_pred             HHHHHHHHhcCchhhhhhHHHH
Q 016124          360 KVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~a  381 (394)
                      .|+.++..+|++++|.+.+++.
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhcc
Confidence            9999999999999999988773

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=6.3e-18  Score=157.23  Aligned_cols=309  Identities=11%  Similarity=0.043  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+|..+-..+...|++++|...+.++.+.     +. .| ....+..+...|.+.|++++|..+|+++...       ..
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----Gl-~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------Gv  503 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEA-----GL-KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-------GV  503 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------CC
Confidence            34566667777888888888888776553     11 11 2335667777888888888888888776543       11


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .....++..+...|.+.|++++|...|.+....     + -.|+ ..+++.+...|...|++++|.+++.++......  
T Consensus       504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----G-v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g--  574 (1060)
T PLN03218        504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP--  574 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC--
Confidence            223456777777888888888888887776542     1 1122 345677777777777777777777776542110  


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                       ..|+    ..++..+...|.+.|++++|.++|++..+.       ..+....++..+...|.+.|++++|..+|.+...
T Consensus       575 -i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        575 -IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             -CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             1122    123455666677777777777777665432       1122334566666666666777776666666544


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      .      .-.|+ ..++..+...+...|++++|.++++++.+.       ..+....++..+...|.+.|+.+ +|...|
T Consensus       643 ~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-eA~~lf  707 (1060)
T PLN03218        643 K------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-KALELY  707 (1060)
T ss_pred             c------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence            1      11222 334555556666666666666666554431       11112234555555555555555 555555


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      ++..+.     + ..|+ ..++..+...|.+.|++++|.++|+++.
T Consensus       708 ~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        708 EDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            544321     0 1111 2345555555555555555555555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=7e-18  Score=156.96  Aligned_cols=311  Identities=14%  Similarity=0.074  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .++..+...|...|++++|..+|+++...     +. .| ...++..+...|.+.|++++|..+|.+....       ..
T Consensus       473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv-~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-------Gv  538 (1060)
T PLN03218        473 KLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV-EA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-------NV  538 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-------CC
Confidence            45778889999999999999999988653     11 12 2456888899999999999999999887653       11


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .....++..+...|.+.|++++|...+.+.......    -.|+ ..++..+...|.+.|++++|.++|+++.+.-    
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g----  609 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN----  609 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----
Confidence            223567889999999999999999999988653111    1222 3577888899999999999999999887631    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                       ..++    ..++..+...|.+.|++++|..+|++....     | -.|+ ..++..+...+.+.|++++|.+++..+.+
T Consensus       610 -i~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k  677 (1060)
T PLN03218        610 -IKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK  677 (1060)
T ss_pred             -CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence             1222    235678889999999999999999987652     1 2333 45788899999999999999999998876


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      .       .......++..+...|.+.|++++|..+|++....      .-.|+ ..+|..|...|.+.|+.+ +|.++|
T Consensus       678 ~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~e-eAlelf  742 (1060)
T PLN03218        678 Q-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLP-KALEVL  742 (1060)
T ss_pred             c-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHH-HHHHHH
Confidence            2       23344567889999999999999999999886542      12233 456899999999999999 999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                      ++....     | -.|+ ..++..+...+.+.|++++|..++.++.+.
T Consensus       743 ~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        743 SEMKRL-----G-LCPN-TITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            987642     1 1233 346677778999999999999999988653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.3e-18  Score=142.58  Aligned_cols=328  Identities=14%  Similarity=0.119  Sum_probs=254.4

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      -.-|+..+..|+|+.|+.+|..++.+.        |.....+.+...+|...|+|++|++--.+.+++        .|.+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~w   69 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPDW   69 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCch
Confidence            456888899999999999999999873        223445777888899999999999888888776        6788


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh----------------------------------------------
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----------------------------------------------  133 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------------------------  133 (394)
                      +..|..+|..+.-+|+|++|+..|.+.++.-...                                              
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~  149 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV  149 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence            8999999999999999999999988776431100                                              


Q ss_pred             ------------------------------------------------hCC------------CchH------HHHHHHH
Q 016124          134 ------------------------------------------------YGE------------NDGR------VGMAMCS  147 (394)
Q Consensus       134 ------------------------------------------------~~~------------~~~~------~~~~~~~  147 (394)
                                                                      ..+            +...      .+.....
T Consensus       150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~  229 (539)
T KOG0548|consen  150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE  229 (539)
T ss_pred             HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence                                                            000            0000      1223567


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccH
Q 016124          148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  227 (394)
Q Consensus       148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  227 (394)
                      +|.......+++.|+..|..++++...           ..-+.+.+.+|...|.+.+.+.....+++....... +....
T Consensus       230 lgnaaykkk~f~~a~q~y~~a~el~~~-----------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI  297 (539)
T KOG0548|consen  230 LGNAAYKKKDFETAIQHYAKALELATD-----------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI  297 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHhhh-----------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence            788888889999999999999987521           344578899999999999999988888776443321 11225


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh--hc----------------CCCCCcchHHHHHHHHHHHhhcChHHH
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTK--TV----------------GPDDQSISFPMLHLGITLYHLNRDKEA  289 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (394)
                      +.++..+|..|...++++.|+.+|++++.-.+.  ..                .--.|....-...-|..++..|+|..|
T Consensus       298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A  377 (539)
T KOG0548|consen  298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA  377 (539)
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence            556667888999999999999999998764332  00                001233444455669999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 016124          290 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG  369 (394)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  369 (394)
                      +..|.+++...        |+.+..+.+.|-+|.++|++. .|+...+.++++        +|.....+..-|.++..+.
T Consensus       378 v~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  378 VKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP-EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHH
Confidence            99999988732        777889999999999999999 999999998875        6888899999999999999


Q ss_pred             CchhhhhhHHHHHHHHHHHHHhh
Q 016124          370 RKEEKFPLKKRLSNLRMKYKQKV  392 (394)
Q Consensus       370 ~~~~A~~~~~~a~~~~~~~~~~~  392 (394)
                      +|++|.+.|.++++..++..+.+
T Consensus       441 ~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  441 EYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999887766543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=1.1e-17  Score=134.73  Aligned_cols=285  Identities=16%  Similarity=0.128  Sum_probs=226.2

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .+.+-.+...|+++.|++.+.-.    ++   .+......+-.++..+++.+|  ++.+|..+...++.+        +.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~----~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr  487 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVF----EK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR  487 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHH----Hh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence            45667788999999998876432    22   233334445566776666654  788899998888876        34


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ..+.++.+-|.+-+..|++++|.+.|++++.        ++.....+++++|..+..+|+.++|+.+|-+...+....  
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn--  557 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--  557 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence            4567788899999999999999999999985        356667899999999999999999999999988887643  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                              +.++..++.+|..+.+..+|++++.++..+        .|....++..||.+|-+.|+-.+|.+++-.+.. 
T Consensus       558 --------~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyr-  620 (840)
T KOG2003|consen  558 --------AEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-  620 (840)
T ss_pred             --------HHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-
Confidence                    567789999999999999999999988764        355566788999999999999999998876655 


Q ss_pred             HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124          258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  337 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~  337 (394)
                             ..|....+...||..|....-+++|+.+|+++.-+.        |........++.|+.+.|++. +|.+.|+
T Consensus       621 -------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk  684 (840)
T KOG2003|consen  621 -------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYK  684 (840)
T ss_pred             -------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHH
Confidence                   346667777889999999999999999999986543        555566677899999999999 9999888


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 016124          338 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  370 (394)
Q Consensus       338 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  370 (394)
                      ..-..        .|...+++.-|.++.-..|-
T Consensus       685 ~~hrk--------fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  685 DIHRK--------FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHh--------CccchHHHHHHHHHhccccc
Confidence            76542        45567777777777766664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1e-18  Score=143.76  Aligned_cols=278  Identities=16%  Similarity=0.137  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..+...+..++..++|.+..+..+..++.       +++.....-..+| ++...|+..+   +|.-+.++.+     ..
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia-~l~el~~~n~---Lf~lsh~LV~-----~y  308 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIA-CLYELGKSNK---LFLLSHKLVD-----LY  308 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHH-HHHHhcccch---HHHHHHHHHH-----hC
Confidence            34445566677778888888877777765       3333333344556 7777777544   4444444433     35


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      |..+..|+.+|..|...|++.+|..+|.++..+..          ....+|...|..+...|..++|+..|..|-++...
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~----------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP----------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc----------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            77777899999999999999999999999987532          23556788999999999999999999999877532


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .        ......+|.-|...+++.-|..+|.+|+.+.        |.....+..+|.+....+.|.+|..+|+.++.
T Consensus       379 ~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~  442 (611)
T KOG1173|consen  379 C--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALE  442 (611)
T ss_pred             C--------cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence            2        1234468899999999999999999999863        44556778999999999999999999999997


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhH
Q 016124          299 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  378 (394)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  378 (394)
                      ..+... +..+....++.+||.++.+++.++ +|+.++++++.+        .|..+.++..+|.+|..+|+++.|++.|
T Consensus       443 ~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  443 VIKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             Hhhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence            666543 333455667899999999999999 999999999975        3455778899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 016124          379 KRLSNLRMKY  388 (394)
Q Consensus       379 ~~a~~~~~~~  388 (394)
                      .+++.+.+..
T Consensus       513 hKaL~l~p~n  522 (611)
T KOG1173|consen  513 HKALALKPDN  522 (611)
T ss_pred             HHHHhcCCcc
Confidence            9999887653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.84  E-value=8.4e-18  Score=130.28  Aligned_cols=322  Identities=14%  Similarity=0.140  Sum_probs=245.2

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      .+|....-...+|..++..|++..|+..|..|++.        +|....+++..|.+|..+|+-.-|+.-+.+++++   
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence            45555666789999999999999999999999874        4777788999999999999999999999999987   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHCCCH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV------------GMAMCSLAHAKCANGNA  158 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------~~~~~~la~~~~~~g~~  158 (394)
                           .|+...+....|.++.++|++++|+.-|...++.-.     +....            ...+......+...|+.
T Consensus       102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~-----s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~  171 (504)
T KOG0624|consen  102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP-----SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC  171 (504)
T ss_pred             -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence                 678888889999999999999999999999886421     11111            12233445556778999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 016124          159 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  238 (394)
Q Consensus       159 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  238 (394)
                      ..|+.+....+++.          +.-+..+...+.+|...|+...|+.-++.+-++.        .+....++.++.++
T Consensus       172 ~~ai~~i~~llEi~----------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~  233 (504)
T KOG0624|consen  172 QNAIEMITHLLEIQ----------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLL  233 (504)
T ss_pred             hhHHHHHHHHHhcC----------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHH
Confidence            99999999998863          2224556778999999999999999998876652        34456788999999


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH---------HHHHHhhcChHHHHHHHHHHHHHHHHHcCCC-C
Q 016124          239 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-S  308 (394)
Q Consensus       239 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~  308 (394)
                      ...|+.+.++...++++.+     .++|......|..+         +.-....++|.++++..++.++..     |. .
T Consensus       234 Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~  303 (504)
T KOG0624|consen  234 YTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEET  303 (504)
T ss_pred             HhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Cccc
Confidence            9999999999999999883     34443333333222         222334455555555555554421     22 1


Q ss_pred             hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +-.......+..|+...|++- +|+....+++++        .|+.+.++...+.+|.-...|+.|+.-|++|.++.+..
T Consensus       304 ~ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  304 MIRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             ceeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            222344556778888889888 999888888864        57788999999999999999999999999999887665


Q ss_pred             HH
Q 016124          389 KQ  390 (394)
Q Consensus       389 ~~  390 (394)
                      .+
T Consensus       375 ~~  376 (504)
T KOG0624|consen  375 TR  376 (504)
T ss_pred             HH
Confidence            43

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=4.4e-17  Score=125.23  Aligned_cols=302  Identities=16%  Similarity=0.162  Sum_probs=224.2

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh
Q 016124           22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  101 (394)
Q Consensus        22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  101 (394)
                      .|.-+.-..+.++|++.|..+++.        +|...++...+|+.|...|..+.|+.+.+..+..    .+-.......
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~l  108 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLL  108 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHH
Confidence            455566678899999999888773        5778899999999999999999999988776542    1111223456


Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      ++..||.-|+..|-++.|+..|....+.        ......++..|..+|....+|++|++..++...+..     .+.
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-----q~~  175 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-----QTY  175 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-----ccc
Confidence            7889999999999999999999987753        223345788899999999999999999998887643     345


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      ...++..+..+|..+....+.+.|...+.+|++.        +|....+-..+|.++...|+++.|++.++.+++     
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-----  242 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-----  242 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence            6778889999999999999999999999999984        566667777899999999999999999999887     


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                        .++.....+...|..+|...|+.++....+.++.+...      .+.   ....++..-....-.+ .|..++.+-+.
T Consensus       243 --Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~~---~~l~l~~lie~~~G~~-~Aq~~l~~Ql~  310 (389)
T COG2956         243 --QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GAD---AELMLADLIELQEGID-AAQAYLTRQLR  310 (389)
T ss_pred             --hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Ccc---HHHHHHHHHHHhhChH-HHHHHHHHHHh
Confidence              45556777888999999999999999999999877541      122   2233444433333344 66666655543


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHH---hcCchhhhhhHHHHH
Q 016124          342 IQEREFGSESEEVMLTLKKVVSYLDK---LGRKEEKFPLKKRLS  382 (394)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~  382 (394)
                              .+|.....+ .+......   .|+..+.+..++..+
T Consensus       311 --------r~Pt~~gf~-rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         311 --------RKPTMRGFH-RLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             --------hCCcHHHHH-HHHHhhhccccccchhhhHHHHHHHH
Confidence                    245444333 33333222   234555555555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=7.9e-19  Score=134.98  Aligned_cols=285  Identities=14%  Similarity=0.095  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc--chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA--DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  131 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  131 (394)
                      .|....+++.  .+++...+...|.......+++-.........  ...+....+|.||..+|-+.+|.+.++.++... 
T Consensus       177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-  253 (478)
T KOG1129|consen  177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-  253 (478)
T ss_pred             ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence            3555666554  35666778888887777766654332222222  223445679999999999999999999998752 


Q ss_pred             HhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                           .+   ..++..++.+|.+..++..|+..+.+.++.+.       ..   ...+..+++++..++++++|.++|+.
T Consensus       254 -----~~---~dTfllLskvY~ridQP~~AL~~~~~gld~fP-------~~---VT~l~g~ARi~eam~~~~~a~~lYk~  315 (478)
T KOG1129|consen  254 -----PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-------FD---VTYLLGQARIHEAMEQQEDALQLYKL  315 (478)
T ss_pred             -----Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-------ch---hhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence                 23   34677899999999999999999999988542       11   34557899999999999999999999


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124          212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      +++.        +|....+...+|.-|.-.++++-|+.+|++.+++     |   ......+.++|.|++-.++++-++.
T Consensus       316 vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G---~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  316 VLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----G---AQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----c---CCChHHHhhHHHHHHhhcchhhhHH
Confidence            9874        5666667777888899999999999999999985     2   2334577899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 016124          292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK  371 (394)
Q Consensus       292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  371 (394)
                      .|++|+...     .+....+.+|++||.+....|++. -|..+|+-++.        .+++..+++.+||.+-.+.|+.
T Consensus       380 sf~RAlsta-----t~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  380 SFQRALSTA-----TQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHhhc-----cCcchhhhhhhccceeEEeccchH-HHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCch
Confidence            999999876     333456789999999999999999 99999998874        4677789999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHH
Q 016124          372 EEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       372 ~~A~~~~~~a~~~~~~~~  389 (394)
                      ++|..++..+-.+.+.+-
T Consensus       446 ~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHHHHHHHHhhhhCcccc
Confidence            999999999887766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=3.5e-20  Score=150.99  Aligned_cols=266  Identities=20%  Similarity=0.185  Sum_probs=107.6

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..+|.+++..|++++|+..+.+.+...      .+|.....+..+|.+....+++++|+..|++.+...        +..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~   77 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence            367999999999999999997665432      123445667788999999999999999999998752        223


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ...+..++.+ ...+++++|..++.++.+..      .++   ..+.....++...++++++...++++.....     .
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~  142 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELPA-----A  142 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred             cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----C
Confidence            4456666776 68999999999998876542      122   3345567788999999999999999775221     1


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  259 (394)
                      +++   ...+..+|.++...|++++|+..++++++.        .|....+...++.++...|+++++.+.+....... 
T Consensus       143 ~~~---~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-  210 (280)
T PF13429_consen  143 PDS---ARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-  210 (280)
T ss_dssp             -T----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence            122   345678999999999999999999999986        46666778889999999999999888887766532 


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  339 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~a  339 (394)
                          +.+|   ..+..+|.++...|++++|+.++++++...        |.....+..+|.++...|+.+ +|..+++++
T Consensus       211 ----~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~~~g~~~-~A~~~~~~~  274 (280)
T PF13429_consen  211 ----PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALEQAGRKD-EALRLRRQA  274 (280)
T ss_dssp             ----HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT----------------
T ss_pred             ----cCHH---HHHHHHHHHhcccccccccccccccccccc--------ccccccccccccccccccccc-ccccccccc
Confidence                2233   345678999999999999999999988743        444557889999999999999 999999988


Q ss_pred             HHH
Q 016124          340 LRI  342 (394)
Q Consensus       340 l~~  342 (394)
                      +..
T Consensus       275 ~~~  277 (280)
T PF13429_consen  275 LRL  277 (280)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=2.1e-20  Score=152.37  Aligned_cols=265  Identities=23%  Similarity=0.234  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      .+|.++...|++++|++.+.+.+...      .++.....+..+|.+....++++.|+..|++.+..-        +...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~   78 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------cccc
Confidence            66999999999999999997655432      124445677788999999999999999999998752        2233


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      ..+..++.+ ...+++++|..+++++.+..       +++    ..+.....++...++++++...++++...      .
T Consensus        79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~  140 (280)
T PF13429_consen   79 QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEEL------P  140 (280)
T ss_dssp             ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T
T ss_pred             ccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhc------c
Confidence            445666666 68999999999998877632       121    22344667788999999999999987642      1


Q ss_pred             CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                      ..+.....+..+|.++...|++++|+..++++++.        .|....+...++.++...|+.+++.+.+.......  
T Consensus       141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--  210 (280)
T PF13429_consen  141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--  210 (280)
T ss_dssp             ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence            23455678889999999999999999999999985        46666778889999999999999888887766543  


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                         +.+|.   .+..+|.++...|+++ +|+.++++++..        +|....++..+|.++...|+.++|..++++++
T Consensus       211 ---~~~~~---~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  211 ---PDDPD---LWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             ---HTSCC---HCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT----------------
T ss_pred             ---cCHHH---HHHHHHHHhccccccc-cccccccccccc--------cccccccccccccccccccccccccccccccc
Confidence               23333   4678899999999999 999999998864        35556778889999999999999999999987


Q ss_pred             HH
Q 016124          383 NL  384 (394)
Q Consensus       383 ~~  384 (394)
                      ..
T Consensus       276 ~~  277 (280)
T PF13429_consen  276 RL  277 (280)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>PRK12370 invasion protein regulator; Provisional

Probab=99.84  E-value=1.3e-17  Score=148.08  Aligned_cols=251  Identities=12%  Similarity=-0.008  Sum_probs=191.3

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---------chhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---------RAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      .+.+++|+..|++++++        +|....++..+|.++...+         ++++|...+++++++        +|..
T Consensus       274 ~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~  337 (553)
T PRK12370        274 PYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNN  337 (553)
T ss_pred             HHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCC
Confidence            45678999999999876        3455667778888776443         478999999999886        5667


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ..++..+|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..+++++++.       
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------  402 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------  402 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence            788999999999999999999999999987        45555678999999999999999999999999863       


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  259 (394)
                      |.++..   ...++.++...|++++|+..+++++..       ..|.....+..+|.++...|++++|...+.+...   
T Consensus       403 P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---  469 (553)
T PRK12370        403 PTRAAA---GITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---  469 (553)
T ss_pred             CCChhh---HHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence            333322   234555677799999999999998764       2355566788999999999999999999987654   


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  339 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~a  339 (394)
                           ..|........++..|...|  ++|...+++.++.....  +.++      ..+..++.-.|+.+ .+... +++
T Consensus       470 -----~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~-~~~~~-~~~  532 (553)
T PRK12370        470 -----QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAI-AEKMW-NKF  532 (553)
T ss_pred             -----ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhH-HHHHH-HHh
Confidence                 34555666778888888888  48888888876655432  2222      23677777778766 55444 444


Q ss_pred             H
Q 016124          340 L  340 (394)
Q Consensus       340 l  340 (394)
                      .
T Consensus       533 ~  533 (553)
T PRK12370        533 K  533 (553)
T ss_pred             h
Confidence            3

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.84  E-value=8e-17  Score=125.78  Aligned_cols=350  Identities=16%  Similarity=0.089  Sum_probs=267.9

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      ...-|.-++...++.+|+..+.+.+......     ......+-.+..+...+|.|++++.+--..++.+....  +...
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~   81 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF   81 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            4556777888999999999999988765432     34556677778888999999998887666666554432  3445


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...++.+++..+....++.+++.+-...+.+-....+   ..-......++..+..++.++++++.|++|+.+....   
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---  155 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---  155 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc---
Confidence            6678889999999998888888887766654111000   1122455668999999999999999999999998764   


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                       .|+..-..++..+|..+....++++|.-+..+|.++.....-.+.  .....+++.++..+..+|+..+|.++.+++.+
T Consensus       156 -~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k  234 (518)
T KOG1941|consen  156 -DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK  234 (518)
T ss_pred             -CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence             455555667789999999999999999999999998876542221  12345678899999999999999999999999


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc----hHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD----TKL  332 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~~A  332 (394)
                      +.-..  ++.+....++..+|.+|...|+.+.|..-|++|..+....  .+......++...+.++....-..    -.|
T Consensus       235 lal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cra  310 (518)
T KOG1941|consen  235 LALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRA  310 (518)
T ss_pred             HHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence            87665  5667788899999999999999999999999999988765  344455666777777766544333    149


Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +++-++++++..++ |. ...+...+..++.+|..+|.-++=...+.++-+..++.
T Consensus       311 le~n~r~levA~~I-G~-K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~  364 (518)
T KOG1941|consen  311 LEFNTRLLEVASSI-GA-KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET  364 (518)
T ss_pred             hHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            99999999998775 32 34567788899999999999888888777776655543

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=7.6e-18  Score=149.54  Aligned_cols=254  Identities=14%  Similarity=0.099  Sum_probs=194.1

Q ss_pred             hhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh---------CcHHHHHHHHHHHHHHHHHhhCCCchHH
Q 016124           71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRV  141 (394)
Q Consensus        71 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~  141 (394)
                      .+.+++|+.+|++++++        +|....++..+|.++...         +++++|...+++++++        +|..
T Consensus       274 ~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~  337 (553)
T PRK12370        274 PYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNN  337 (553)
T ss_pred             HHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCC
Confidence            35678999999999886        566777888888887644         3488999999999986        4555


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      ..++..+|.++...|++++|+..+++++++.       |+++   .++..+|.++...|++++|+..+++++.+      
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------  401 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISA---DIKYYYGWNLFMAGQLEEALQTINECLKL------  401 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence            6678899999999999999999999999963       3333   35688999999999999999999999986      


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  301 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  301 (394)
                        +|........++.++...|++++|+..+++++..       ..|.....+..+|.++...|++++|...+.+...   
T Consensus       402 --~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---  469 (553)
T PRK12370        402 --DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---  469 (553)
T ss_pred             --CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence              2333334445566677789999999999998762       2355666788999999999999999999887543   


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                           ..|........++..+...|  + +|...+++.++.....  +.++      ..+..++.-.|+.+.+..+ +++
T Consensus       470 -----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~  532 (553)
T PRK12370        470 -----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKF  532 (553)
T ss_pred             -----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHh
Confidence                 33455556778888888888  3 7888788866654331  1222      2267788888998888877 666


Q ss_pred             HHHH
Q 016124          382 SNLR  385 (394)
Q Consensus       382 ~~~~  385 (394)
                      .+-+
T Consensus       533 ~~~~  536 (553)
T PRK12370        533 KNED  536 (553)
T ss_pred             hccc
Confidence            5543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.83  E-value=1.8e-16  Score=150.89  Aligned_cols=352  Identities=15%  Similarity=0.045  Sum_probs=254.2

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      ....+..+...|++++|..++.++...........+ .........++.++...|++++|...+++++....   ..+..
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~  488 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY  488 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence            345677778899999999999988766432110111 22344555678899999999999999999987521   11122


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ....+...+|.++...|++++|...+.+++...+.. + .......++.++|.++...|++++|...+++++.+....  
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--  564 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ--  564 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--
Confidence            234567789999999999999999999999987754 2 223345577899999999999999999999999988764  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      ..+..+....++..+|.++...|++++|...+.+++.+.....   ......++..++.++...|++++|...+.++..+
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            1222233334456789999999999999999999998865332   2234567778999999999999999999999886


Q ss_pred             HHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          258 MTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       258 ~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      ....  ..+... ..........+...|+.+.|..++.......   . .........+..++.++...|+++ +|...+
T Consensus       642 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~-~~~~~~~~~~~~~a~~~~~~g~~~-~A~~~l  714 (903)
T PRK04841        642 LGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---F-ANNHFLQGQWRNIARAQILLGQFD-EAEIIL  714 (903)
T ss_pred             Hhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---C-ccchhHHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence            5442  111111 1111112244556889999888876643311   0 111112233567899999999999 999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ++++...+.. + .......++..+|.++...|+.++|...+.+++++....+
T Consensus       715 ~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        715 EELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence            9999986552 2 3346677888999999999999999999999999876543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.4e-18  Score=138.35  Aligned_cols=247  Identities=12%  Similarity=0.095  Sum_probs=202.9

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      ...+.++...|..++-.|++-.|...++.++.+.        |.....|..+|.+|....+..+....|.+|..+     
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----  389 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-----  389 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----
Confidence            3457888999999999999999999999999874        333334888999999999999999999999887     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         +|..+.+|+..|.+++-++++++|..-|++++.+        +|..+..+..++...++++++++++..|+.+...+
T Consensus       390 ---dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF  458 (606)
T KOG0547|consen  390 ---DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF  458 (606)
T ss_pred             ---CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               6777789999999999999999999999999987        67788889999999999999999999999999876


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-HHHcccHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLL  251 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~  251 (394)
                      ...          ..++...|.++..++++++|++.|+.++.+-....+. +. .+..+.+-|.+ ..-.+++..|+.++
T Consensus       459 P~~----------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll  526 (606)
T KOG0547|consen  459 PNC----------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLL  526 (606)
T ss_pred             CCC----------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHH
Confidence            432          4556778999999999999999999999875431110 00 11122222222 22348999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      .+++++        +|..-.++..||.+..++|+.++|+++|+++..+.+..
T Consensus       527 ~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  527 RKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            999984        57777889999999999999999999999998877543

>TIGR00540 hemY_coli hemY protein

Probab=99.83  E-value=9.2e-17  Score=137.56  Aligned_cols=317  Identities=15%  Similarity=0.115  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      ....-|......|+++.|.+.+.++.+..        |.....+...|.+....|+++.|..++.++.+..        |
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p  149 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------G  149 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence            34556777888899999999998776541        2223345567899999999999999999987542        2


Q ss_pred             ch-HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           98 DL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        98 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .. ..+....+.++...|++++|...+++..+.        .|....++..++.++...|++++|.+.+.+..+..    
T Consensus       150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~----  217 (409)
T TIGR00540       150 NDNILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG----  217 (409)
T ss_pred             cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----
Confidence            22 123444589999999999999999988876        34444567889999999999999999998887742    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                        ..++............-....+..+++.+.+.++.....    ...+........++..+...|++++|.+.++++++
T Consensus       218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence              122222222212222222333444444555555544311    11224567788899999999999999999999998


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      ..     ++++..... ..........++.+.+.+.++++++..     |++|. ...+..+|.++.+.|+++ +|.++|
T Consensus       292 ~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~~l  358 (409)
T TIGR00540       292 KL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAADAF  358 (409)
T ss_pred             hC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHHHH
Confidence            42     222211101 112223344577888888888887643     45553 367889999999999999 999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +++....      .+|+... +..+|.++...|+.++|.+++++++...-..
T Consensus       359 e~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~  403 (409)
T TIGR00540       359 KNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI  403 (409)
T ss_pred             HHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            9543321      1233333 4488999999999999999999998765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.83  E-value=1.4e-17  Score=122.11  Aligned_cols=206  Identities=17%  Similarity=0.152  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      .....+...+|.-|...|++..|...+++|++.        +|....++..++.+|...|+.+.|.+.|++|+.+     
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            456778889999999999999999999999997        6778889999999999999999999999999987     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                         +|....+++|.|..++.+|+|++|...|++|+.        .|.-+....++.|+|.|..+.|+++.|..+|+++++
T Consensus        99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~--------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063          99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA--------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh--------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence               566778899999999999999999999999987        345555567789999999999999999999999998


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      .        +|........++..+...|++..|..++++...        ..+..+.++.....+-...|+-+.|-++=.
T Consensus       168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            6        455666778899999999999999999887655        223556666666777788899888877766


Q ss_pred             HHHHHH
Q 016124          295 EALYIR  300 (394)
Q Consensus       295 ~a~~~~  300 (394)
                      +..+.+
T Consensus       232 qL~r~f  237 (250)
T COG3063         232 QLQRLF  237 (250)
T ss_pred             HHHHhC
Confidence            655443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.8e-19  Score=138.50  Aligned_cols=233  Identities=15%  Similarity=0.108  Sum_probs=201.0

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..+|.+|...|-+.+|.+.++.++...      .   ..+.+..++.+|....+...|+..+.+.++.        .|..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~------~---~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~  289 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF------P---HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD  289 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC------C---chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence            689999999999999999999998753      2   3456778899999999999999999998875        4666


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ...+..++.++..++++++|.++|+.+++.        ++....+...+|..|+..++++-|+.+|++.+++-       
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------  354 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------  354 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------
Confidence            777888999999999999999999999986        45556677788999999999999999999999863       


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  259 (394)
                      ..++.   .+.|+|.+....++++-++..|++++....     +....+.+|+|+|.+....|++.-|...|+-++.   
T Consensus       355 ~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---  423 (478)
T KOG1129|consen  355 AQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---  423 (478)
T ss_pred             CCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc---
Confidence            33333   458999999999999999999999998753     3445788999999999999999999999998886   


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                           .++....++.+||.+-.+.|+.++|..++..|....
T Consensus       424 -----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  424 -----SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             -----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence                 567888999999999999999999999999886644

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.82  E-value=1.6e-16  Score=134.84  Aligned_cols=339  Identities=13%  Similarity=0.003  Sum_probs=231.9

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|+.+..+..+|.++...|+++.+...+.++......     ...........+..+...|++++|...++++++.    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD----   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence            6788889999999999999999998888887776432     1223344556788899999999999999999876    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                          .|....++.. +..+...|++..+.....+++..    ..+.+|........+|.++...|++++|+..+++++++
T Consensus        73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804          73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2333344443 55666666666665555555543    23456777778889999999999999999999999996


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      .       |+.   ..++..+|.++...|++++|+.++++++.....    ........+..++.++...|++++|+..+
T Consensus       144 ~-------p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         144 N-------PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             C-------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4       232   345578999999999999999999999875321    11223446678999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHH--HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124          252 RICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  329 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  329 (394)
                      ++++...     +..+.......  .+...+...|....+..+ +.+........ +.+. ....-...+.++...|+.+
T Consensus       210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHG-LAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cccc-chHHHHHHHHHHhcCCCHH
Confidence            9985421     11111111101  222333444544433333 22222221111 1111 1122235777888889888


Q ss_pred             hHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHh
Q 016124          330 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  391 (394)
Q Consensus       330 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  391 (394)
                       +|...++.......... ..............+.++...|++++|.+.+.+++.+...++.|
T Consensus       282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence             89998888776654410 01123345666778889999999999999999999999887754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.81  E-value=6.5e-18  Score=155.07  Aligned_cols=306  Identities=11%  Similarity=0.041  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------------------------------LLVTSLLGMA   65 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~l~   65 (394)
                      .+|+.+...|...|++++|+..|+++.....   .++..                               ....+++.+.
T Consensus       190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li  266 (697)
T PLN03081        190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI  266 (697)
T ss_pred             eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence            4577888888888999999999988764210   00000                               0112345667


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124           66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  145 (394)
Q Consensus        66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  145 (394)
                      ..|.+.|++++|...|++..           +....+|+.+...|...|++++|...|.+....     + -.|+ ..++
T Consensus       267 ~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~  328 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTF  328 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHH
Confidence            78888888888888887531           123456778888888888888888888876542     1 1111 2355


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH---------------
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE---------------  210 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------  210 (394)
                      ..+...+...|++++|...+..+++.-     ..++    ..+++.+...|.+.|++++|...|+               
T Consensus       329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g-----~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~  399 (697)
T PLN03081        329 SIMIRIFSRLALLEHAKQAHAGLIRTG-----FPLD----IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA  399 (697)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhC-----CCCC----eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence            566666666666666666666655431     1111    1122444555555555555555554               


Q ss_pred             ----------------HHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124          211 ----------------ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  274 (394)
Q Consensus       211 ----------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (394)
                                      +....     | -.|+ ..++..+...+...|..++|.++|+...+..     +..| ....+.
T Consensus       400 ~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~  466 (697)
T PLN03081        400 GYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYA  466 (697)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchH
Confidence                            43321     0 1111 2233344444444444444444444433210     0111 122344


Q ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHH
Q 016124          275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV  354 (394)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~  354 (394)
                      .+...+.+.|++++|.+.+++.         +..|. ..+|..|...+...|+.+ .|...+++.+++        .|..
T Consensus       467 ~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~  527 (697)
T PLN03081        467 CMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEK  527 (697)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCC
Confidence            5555555555555555554331         11222 234666666666666666 666665555432        2333


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          355 MLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       355 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                      ...+..++.+|...|++++|.++++.+.+.
T Consensus       528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            456778888999999999999998877644

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=2.4e-17  Score=132.67  Aligned_cols=267  Identities=17%  Similarity=0.134  Sum_probs=210.8

Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC--cHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      .+.+..+.+.|+++.|++.+.-    +++   .++.....+-.+|..+++.+|  ++.+|..+...++.+        +.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr  487 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR  487 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence            3456667888999988876542    221   234444556677777777644  788899998888875        33


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ..+.++.+-|.+-+..|++++|.+.|++++.          +......+++++|..+..+|+.++|+++|-+...+..  
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~----------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~--  555 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN----------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--  555 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHc----------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--
Confidence            4456788899999999999999999999986          2334467789999999999999999999998877753  


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                            ..+.++..++.+|..+.+..+|++++.++..+        .|.....+..||.+|-+.|+-.+|..++-...+.
T Consensus       556 ------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyry  621 (840)
T KOG2003|consen  556 ------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY  621 (840)
T ss_pred             ------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence                  34678899999999999999999999988763        3455567889999999999999999998877765


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHH
Q 016124          300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK  379 (394)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  379 (394)
                      +        |....+..+|+..|....-++ +|+.+|+++--+        .|........++.|+.+.|+|.+|.++|+
T Consensus       622 f--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  622 F--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             c--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4        555667778998888887677 999999998643        35566667788999999999999999998


Q ss_pred             HHHHHHH
Q 016124          380 RLSNLRM  386 (394)
Q Consensus       380 ~a~~~~~  386 (394)
                      ..-...+
T Consensus       685 ~~hrkfp  691 (840)
T KOG2003|consen  685 DIHRKFP  691 (840)
T ss_pred             HHHHhCc
Confidence            8655443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=4.1e-17  Score=130.26  Aligned_cols=204  Identities=16%  Similarity=0.108  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      +.....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++...    
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----   95 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN----   95 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence            455778899999999999999999999999875        35566788899999999999999999999999862    


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                          |.....+.++|.++...|++++|+..+++++...        ..+.....+.++|.++...|++++|...+.+++.
T Consensus        96 ----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        96 ----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             ----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                2334578889999999999999999999998742        1122234567899999999999999999999987


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      .        .|.....+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+
T Consensus       164 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 I--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             h--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5        2334567889999999999999999999999884        13345566678899999999999998877


Q ss_pred             HHHH
Q 016124          295 EALY  298 (394)
Q Consensus       295 ~a~~  298 (394)
                      ....
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            6544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=3.7e-17  Score=130.51  Aligned_cols=206  Identities=16%  Similarity=0.130  Sum_probs=169.0

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +.+..+..+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..   
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---   94 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---   94 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence            34456788899999999999999999999999875        2344567888999999999999999999999886   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           .|.....+..+|.++...|++++|+..+.+++...      ..+.....+..+|.++...|++++|...+.+++.
T Consensus        95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 34445678899999999999999999999998641      2334455678899999999999999999999988


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  250 (394)
                      ..       ++.   ...+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+
T Consensus       164 ~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       164 ID-------PQR---PESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             hC-------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            53       222   234578999999999999999999998875        122345556788999999999999988


Q ss_pred             HHHHHH
Q 016124          251 LRICLD  256 (394)
Q Consensus       251 ~~~a~~  256 (394)
                      .+....
T Consensus       226 ~~~~~~  231 (234)
T TIGR02521       226 GAQLQK  231 (234)
T ss_pred             HHHHHh
Confidence            776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.80  E-value=2.2e-16  Score=137.10  Aligned_cols=333  Identities=19%  Similarity=0.165  Sum_probs=233.3

Q ss_pred             ccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124            7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus         7 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .+-..+|....+|..||.+|..+|+.+++...+-.|-.+     .+.++   ..|..++.....+|++.+|.-+|.+|++
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            334457778889999999999999999999988777654     23332   5688889999999999999999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELY  165 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~  165 (394)
                      .        .|.........+.+|.++|+...|...|.+.+....    +.+.. ........+..+...++-+.|++.+
T Consensus       236 ~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  236 A--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             c--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7        455677888899999999999999999999988742    11112 2233345577777788788888888


Q ss_pred             HHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------H--------
Q 016124          166 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------I--------  215 (394)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------~--------  215 (394)
                      +.++...... ...+       .+..++.++.....++.|......-..                      +        
T Consensus       304 e~~~s~~~~~-~~~e-------d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s  375 (895)
T KOG2076|consen  304 EGALSKEKDE-ASLE-------DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS  375 (895)
T ss_pred             HHHHhhcccc-cccc-------HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence            8887732211 0111       113344555555555555444332221                      0        


Q ss_pred             --------------------------HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124          216 --------------------------TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  269 (394)
Q Consensus       216 --------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  269 (394)
                                                ..........+....+..++..+...|++.+|+.++.....       ......
T Consensus       376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~  448 (895)
T KOG2076|consen  376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN  448 (895)
T ss_pred             ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc
Confidence                                      00000001223456678899999999999999999988766       233345


Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH-HhhcC
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFG  348 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~-~~~~~  348 (394)
                      ...|..+|.||..+|.+++|+.+|++++...        |....+...|+.++..+|+.+ +|.+.+.+...-- ...-+
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~  519 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEA  519 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhh
Confidence            7789999999999999999999999999855        455567889999999999999 8888777643100 00001


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          349 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      ...+...........++...|+.++=+..-...+.
T Consensus       520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVD  554 (895)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            11234456678888999999999885554444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.80  E-value=2.8e-17  Score=133.99  Aligned_cols=213  Identities=13%  Similarity=0.103  Sum_probs=156.9

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124            5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus         5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      +.....+++..+..++.+|.++...|++++|+..|++++++        .|....+++.+|.++...|++++|+..|+++
T Consensus        53 l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         53 LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33334455667888999999999999999999999999986        2445678999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  164 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  164 (394)
                      +++        .|....++.++|.++...|++++|+..+++++..     .++++.. ..+   ..+....+++++|+..
T Consensus       125 l~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~  187 (296)
T PRK11189        125 LEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKEN  187 (296)
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHH
Confidence            987        5667788999999999999999999999999986     3344421 111   2234567899999999


Q ss_pred             HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccH
Q 016124          165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  244 (394)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  244 (394)
                      +.++....      .++.  .     ..+.+....|+..++ ..+..+.+..+... ...|....+++++|.++...|++
T Consensus       188 l~~~~~~~------~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~~  252 (296)
T PRK11189        188 LKQRYEKL------DKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYYLSLGDL  252 (296)
T ss_pred             HHHHHhhC------Cccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCCH
Confidence            98866421      1111  1     134455567776554 23433332111000 01244567899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 016124          245 VEAERLLRICLDI  257 (394)
Q Consensus       245 ~~A~~~~~~a~~~  257 (394)
                      ++|+.+|++++.+
T Consensus       253 ~~A~~~~~~Al~~  265 (296)
T PRK11189        253 DEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999983

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.80  E-value=6e-17  Score=118.79  Aligned_cols=201  Identities=20%  Similarity=0.196  Sum_probs=168.4

Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ....+...||.-|+..|++..|...++++++.        +|....++..++.+|...|+.+.|.+.|++|+.+..+.  
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--  102 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--  102 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--
Confidence            45667888999999999999999999999987        67777889999999999999999999999999975432  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                              ..+++|.|..++.+|++++|...|++|+..      +..+....++.|+|.|..+.|+++.|..+|++++++
T Consensus       103 --------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         103 --------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             --------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence                    556799999999999999999999999863      456677889999999999999999999999999984


Q ss_pred             HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124          258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  337 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~  337 (394)
                              +|........++..+...|++..|..++++.....        +..+.++.....+-...|+.. .+..+-.
T Consensus       169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y~~  231 (250)
T COG3063         169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRYQA  231 (250)
T ss_pred             --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHHHH
Confidence                    46666777889999999999999999988765422        345666766677777888866 5554444


Q ss_pred             HH
Q 016124          338 RV  339 (394)
Q Consensus       338 ~a  339 (394)
                      +.
T Consensus       232 qL  233 (250)
T COG3063         232 QL  233 (250)
T ss_pred             HH
Confidence            33

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=6.1e-16  Score=119.06  Aligned_cols=275  Identities=14%  Similarity=0.146  Sum_probs=212.2

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                      .|.-+.-..+.++|+..|...++.        +|....+...||.++...|..+.|+..-+..++.-    +-.......
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l  108 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL  108 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence            355566678899999999988874        67788999999999999999999999877665421    111223556


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  223 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  223 (394)
                      ++..||.-|+..|-++.|+..|....+.          +.....++..|..+|....+|++|++..++...+..+   +.
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de----------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~  175 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE----------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY  175 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcc----------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence            8899999999999999999999987652          3333456678999999999999999998877665322   23


Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      ....+..+..++..+....+.+.|...+.++++        .+|...++-..+|.+....|++..|++.++.+++     
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-----  242 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ--------ADKKCVRASIILGRVELAKGDYQKAVEALERVLE-----  242 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------hCccceehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence            456778888999999999999999999999998        3566777888999999999999999999998877     


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                        .++..+..++..|..+|...|+.+ +...++.++.+....         ......++..-....-.+.|..+..+-+.
T Consensus       243 --Qn~~yl~evl~~L~~~Y~~lg~~~-~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         243 --QNPEYLSEVLEMLYECYAQLGKPA-EGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLR  310 (389)
T ss_pred             --hChHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence              455566788889999999999999 999999998875321         12233445555555556666666665555


Q ss_pred             HHHHH
Q 016124          384 LRMKY  388 (394)
Q Consensus       384 ~~~~~  388 (394)
                      -.|..
T Consensus       311 r~Pt~  315 (389)
T COG2956         311 RKPTM  315 (389)
T ss_pred             hCCcH
Confidence            44443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=2.3e-16  Score=128.68  Aligned_cols=227  Identities=14%  Similarity=0.026  Sum_probs=165.5

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124           29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  108 (394)
Q Consensus        29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
                      .+..+.++..+.+++...    ..+++..+..++.+|.++...|++++|+..|++++++        .|....+++.+|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~  106 (296)
T PRK11189         39 TLQQEVILARLNQILASR----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI  106 (296)
T ss_pred             chHHHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence            455677777777777532    1233456788999999999999999999999999986        5667889999999


Q ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      ++...|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++..       |+++.. ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~-~~  170 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYR-AL  170 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHH-HH
Confidence            999999999999999999987        45556688999999999999999999999999853       333321 11


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                         ...+....+++++|+..+.++....       ++..   + ..+.++...|+..++ ..++.+.+...... ...+.
T Consensus       171 ---~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~  234 (296)
T PRK11189        171 ---WLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER  234 (296)
T ss_pred             ---HHHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence               1223456788999999997765321       1111   1 124445556666544 24444433211100 01234


Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      ...++.++|.++...|++++|+.+|+++++.
T Consensus       235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        235 LCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999974

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.1e-16  Score=125.50  Aligned_cols=277  Identities=15%  Similarity=0.151  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      |.....+..+|.+++..|++.+|+..|+++..+        +|......-..|.++...|++++-..+-...+.+.+   
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---  297 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---  297 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence            445667888999999999999999999998775        677778888889999999999988777766665521   


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                           ....-++.-+...+..+++..|+.+-+++++.-.+.          ...+...|..+...|+.++|+-.|+.|..
T Consensus       298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN----------HEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc----------chHHHhccHHHHhccchHHHHHHHHHHHh
Confidence                 222334555677788899999999999999854321          34456789999999999999999999887


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH-HHHH-hhcChHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLY-HLNRDKEAEKL  292 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~  292 (394)
                      +        .|....+|..|..+|...|++.+|.-....++..+        +..+.++..+| .++. .-.--++|.++
T Consensus       363 L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  363 L--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             c--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence            5        35677889999999999999999999888887754        33455666664 3333 33345789999


Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCch
Q 016124          293 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  372 (394)
Q Consensus       293 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  372 (394)
                      +++++.+.        |....+-..++.++...|.++ .++.++++.+..+..         ...+..||.++...+.+.
T Consensus       427 ~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~-D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q  488 (564)
T KOG1174|consen  427 AEKSLKIN--------PIYTPAVNLIAELCQVEGPTK-DIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQ  488 (564)
T ss_pred             HHhhhccC--------CccHHHHHHHHHHHHhhCccc-hHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHH
Confidence            99988754        666777888999999999999 999999999876422         346788999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHh
Q 016124          373 EKFPLKKRLSNLRMKYKQK  391 (394)
Q Consensus       373 ~A~~~~~~a~~~~~~~~~~  391 (394)
                      +|++.|..|+.+.++.+..
T Consensus       489 ~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  489 KAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHHHHhcCccchHH
Confidence            9999999999988876544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.79  E-value=2.8e-15  Score=117.30  Aligned_cols=309  Identities=16%  Similarity=0.100  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC-
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-   96 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-   96 (394)
                      .+-.+..+...+|.|++++.+--..++.....  .+......++.+++..+....++.+++.+-+..+.+-    +... 
T Consensus        45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~  118 (518)
T KOG1941|consen   45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAG  118 (518)
T ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcc
Confidence            34455667788899999888776666665543  3445677889999999999999999998887776541    2111 


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      ..-......+|..+..++.++++++.|+.|+.+....  .|......++..+|..|....++++|..+..+|.++.....
T Consensus       119 ~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  119 QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence            2234566678999999999999999999999987654  22233456788999999999999999999999999988753


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ..+-+......+++.++..+..+|+.-.|.++.+++.++.-...  +.+..+.++..+|.+|...|+.+.|..-|+++..
T Consensus       197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            23333444556778899999999999999999999999887665  5667788889999999999999999999999998


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHH-----HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      +....  .+......++...+.++....-..+     |++.-++++++..++  .....+......++.+|..+|..+ +
T Consensus       275 ~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~K~~vlK~hcrla~iYrs~gl~d-~  349 (518)
T KOG1941|consen  275 TMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GAKLSVLKLHCRLASIYRSKGLQD-E  349 (518)
T ss_pred             HHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccchh-H
Confidence            77665  3344455667777777766544444     999999999998776  333456777889999999998776 5


Q ss_pred             HHHHHHHHHH
Q 016124          332 LLELLKRVLR  341 (394)
Q Consensus       332 A~~~~~~al~  341 (394)
                      -.+.+.++-+
T Consensus       350 ~~~h~~ra~~  359 (518)
T KOG1941|consen  350 LRAHVVRAHE  359 (518)
T ss_pred             HHHHHHHHHH
Confidence            5555555433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.78  E-value=2.1e-15  Score=128.56  Aligned_cols=302  Identities=12%  Similarity=0.079  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .....-|......|++++|.+...++-+.      .+.|..  .+...+......|+++.|..++.++.+.        .
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~  148 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAEL--------A  148 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence            33456677777789999988666654332      122322  2344466669999999999999999764        2


Q ss_pred             cch-HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           97 ADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        97 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      |+. .......+.++...|++++|...+++..+.        .|....++..++.+|...|++++|+..+.+..+...  
T Consensus       149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~--  218 (398)
T PRK10747        149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV--  218 (398)
T ss_pred             CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--
Confidence            222 222334489999999999999999998875        344456778889999999999999999998876431  


Q ss_pred             ccCCCchHHHH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          176 NYMSLDDSIME----NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       176 ~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                          .++....    .++..+........+    .+.+.+..+...    ...+........++..+...|+.++|...+
T Consensus       219 ----~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        219 ----GDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS----RKTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                1222222    122222222222222    222332222211    123445667788999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      +++++.      +.++.   .....+  ....++.+++++.+++.++        .+|+....+..+|.++...+++. +
T Consensus       287 ~~~l~~------~~~~~---l~~l~~--~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~-~  346 (398)
T PRK10747        287 LDGLKR------QYDER---LVLLIP--RLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ-E  346 (398)
T ss_pred             HHHHhc------CCCHH---HHHHHh--hccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH-H
Confidence            988872      22222   112222  2345899999988888775        33555667889999999999999 9


Q ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          332 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       332 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      |.++|+++++.        .|+. ..+..++.++...|+.++|..+|++++.+.
T Consensus       347 A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        347 ASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999974        2332 335679999999999999999999998765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.78  E-value=4.2e-15  Score=141.68  Aligned_cols=312  Identities=11%  Similarity=0.031  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .......+|.++...|++++|..++++++....   ..+......+...+|.++...|++++|...+++++.......  
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--  525 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--  525 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--
Confidence            344556678889999999999999999987521   112223455677899999999999999999999999877643  


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      +......++..+|.++...|++++|...+.+++...........+.....+..+|.++...|++++|...+.+++.+...
T Consensus       526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  605 (903)
T PRK04841        526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN  605 (903)
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence            22234557788999999999999999999999999877543333444455677899999999999999999999998764


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHcccHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~  253 (394)
                      .   +  +.....++..++.++...|++++|...+.++..+.....  .+....... ......+...|+.+.|...+..
T Consensus       606 ~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~  678 (903)
T PRK04841        606 Y---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQ  678 (903)
T ss_pred             c---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            2   1  222345667899999999999999999999988754321  111111111 1122445567899998888665


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124          254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  333 (394)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~  333 (394)
                      ....   .. ............++.++...|++++|...+++++......  ......+.++..+|.++...|+.+ +|.
T Consensus       679 ~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~-~A~  751 (903)
T PRK04841        679 APKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLNQLYWQQGRKS-EAQ  751 (903)
T ss_pred             cCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHH-HHH
Confidence            4321   00 0111122234678999999999999999999999986553  234566778889999999999999 999


Q ss_pred             HHHHHHHHHHHh
Q 016124          334 ELLKRVLRIQER  345 (394)
Q Consensus       334 ~~~~~al~~~~~  345 (394)
                      ..+.+++++...
T Consensus       752 ~~L~~Al~la~~  763 (903)
T PRK04841        752 RVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHhCc
Confidence            999999998754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.78  E-value=7.5e-17  Score=148.11  Aligned_cols=298  Identities=13%  Similarity=0.083  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC-
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-   95 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-   95 (394)
                      .+++.+...|...|++++|...|++..+          | ...+++.+...|...|++++|+.+|++.+...   ..++ 
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~  224 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEP  224 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCCh
Confidence            4466777788888888888888776532          1 13457888899999999999999999876431   0000 


Q ss_pred             ------------------------------CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124           96 ------------------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  145 (394)
Q Consensus        96 ------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  145 (394)
                                                    -.....+++.+...|.+.|++++|...|++..           +....+|
T Consensus       225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~  293 (697)
T PLN03081        225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVAW  293 (697)
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhHH
Confidence                                          01122345677888999999999998887642           1134578


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  225 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  225 (394)
                      +.+...|...|++++|+.+|++..+.-     ..++.    .++..+...+...|++++|...+...++.       ..+
T Consensus       294 n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~  357 (697)
T PLN03081        294 NSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFP  357 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCC
Confidence            899999999999999999999876531     22332    24677888999999999999999887653       122


Q ss_pred             cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124          226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  305 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  305 (394)
                      ....++..+...|.+.|++++|...|++..+          + ...+|..+...|...|+.++|++.|++....-     
T Consensus       358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-----  421 (697)
T PLN03081        358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG-----  421 (697)
T ss_pred             CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            2334567788888888888888888876532          1 23467777888888888888888887765421     


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          306 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       306 ~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                       -.|+ ..++..+...+.+.|..+ +|.++|+...+..    + ..| ....+..+..+|.+.|+.++|.+++++
T Consensus       422 -~~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m~~~~----g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        422 -VAPN-HVTFLAVLSACRYSGLSE-QGWEIFQSMSENH----R-IKP-RAMHYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             -CCCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHhc----C-CCC-CccchHhHHHHHHhcCCHHHHHHHHHH
Confidence             1122 334556666666666666 6666666554321    0 011 123344555555555555555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.77  E-value=1.2e-15  Score=138.55  Aligned_cols=330  Identities=12%  Similarity=0.005  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...+..+|..+...|++++|+..|+++++..     ++.   ..++..++..+...++.++|+..++++...        
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------  165 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTN---PDLISGMIMTQADAGRGGVVLKQATELAER--------  165 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------
Confidence            3344455778888888888888888887752     222   344456677777778888887777776554        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh------------------------------------------
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV------------------------------------------  133 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------  133 (394)
                      .|.... +..++.++...++..+|+..++++++.....                                          
T Consensus       166 dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~  244 (822)
T PRK14574        166 DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD  244 (822)
T ss_pred             CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence            222222 2334445544566656777777766542110                                          


Q ss_pred             ---------------------------------h------CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          134 ---------------------------------Y------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       134 ---------------------------------~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                                                       .      ++.++....+....-.++...|++.+++..|+....    
T Consensus       245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~----  320 (822)
T PRK14574        245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA----  320 (822)
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----
Confidence                                             0      000001111111222233334444444444444322    


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                         .+..-|..  +....|..|...+++++|+.+|.+++.-.....  ..+........|-..|...+++++|..++++.
T Consensus       321 ---~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~  393 (822)
T PRK14574        321 ---EGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY  393 (822)
T ss_pred             ---cCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               11111222  335678889999999999999988765321100  11223333457788899999999999999988


Q ss_pred             HHHHH-hh--c----CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124          255 LDIMT-KT--V----GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  327 (394)
Q Consensus       255 ~~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  327 (394)
                      .+... ..  .    ...+|+.......++.++...|++.+|.+.+++.+...        |........+|.++...|.
T Consensus       394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL  465 (822)
T ss_pred             HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence            76211 00  1    13456777888889999999999999999999987654        5555678899999999999


Q ss_pred             CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124          328 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       328 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                      +. +|...++.++.+        +|+...+...++.++..+|++.+|......+++..++...
T Consensus       466 p~-~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        466 PR-KAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             HH-HHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            99 999999777653        4666778889999999999999999999888877666554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5.5e-15  Score=121.60  Aligned_cols=242  Identities=14%  Similarity=0.068  Sum_probs=191.6

Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      ..-.+|.......++..|+..|..++++.         .....+.+.+.+|...|.+.+.+....++++.....   ..+
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad  293 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RAD  293 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHH
Confidence            34568888889999999999999999873         334457889999999999999999999988765432   123


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--hh----------------CCCCccHHHHHHHHHHHHHHccc
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~  243 (394)
                      ...++.+...+|..|...++++.|+.+|++++...+.  ..                ....|..+.-...-|..++..|+
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence            3445666677888999999999999999998765432  00                01234445555566899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 016124          244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT  323 (394)
Q Consensus       244 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  323 (394)
                      |..|+..|.+++.        ..|.....+.+.|.||...|.+..|+...+.+++.        +|.....+..-|.++.
T Consensus       374 y~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  374 YPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHH
Confidence            9999999999887        35888999999999999999999999999998875        4778889999999999


Q ss_pred             HhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          324 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       324 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                      .+.+++ +|++.|+++++.        +|....+...+.+++..+.......+..++
T Consensus       438 ~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  438 AMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            999999 999999999974        467777777888888765444445555554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-14  Score=124.53  Aligned_cols=331  Identities=18%  Similarity=0.132  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-----------chhHHHHHHH
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----------RAKKAVEIYH   82 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~   82 (394)
                      +....+..-..+....+.+++++.+..+++..+...   .......++..+|.+|..+-           ...+++..++
T Consensus       392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale  468 (799)
T KOG4162|consen  392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE  468 (799)
T ss_pred             cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence            333444444456678899999999999999976332   23345566777777775432           2345555555


Q ss_pred             HHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHH
Q 016124           83 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  162 (394)
Q Consensus        83 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  162 (394)
                      ++++.        ++....+.+.++.-|..+++.+.|..+.++++++.       ....+.++..++.++...+++.+|+
T Consensus       469 ~av~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al  533 (799)
T KOG4162|consen  469 EAVQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEAL  533 (799)
T ss_pred             HHHhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHH
Confidence            55554        23344778899999999999999999999999872       3344568899999999999999999


Q ss_pred             HHHHHHHHHHHhccc-----------CCCchHHHHHHHHHH----------------------HHHHHHcCChHHHHHHH
Q 016124          163 ELYKKALRVIKDSNY-----------MSLDDSIMENMRIDL----------------------AELLHIVGRGQEGRELL  209 (394)
Q Consensus       163 ~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~~~l----------------------a~~~~~~g~~~~A~~~~  209 (394)
                      ...+.+++-...+..           +++....+..+...+                      +......++..+|....
T Consensus       534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s  613 (799)
T KOG4162|consen  534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS  613 (799)
T ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence            999999886543100           000000000000000                      00111122334444444


Q ss_pred             HHHHHHHHHhh----------------CCCCcc--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124          210 EECLLITEKYK----------------GKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  271 (394)
Q Consensus       210 ~~a~~~~~~~~----------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  271 (394)
                      .++........                +++++.  ....+...+..+...++.++|..++.++-.+        .|....
T Consensus       614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~  685 (799)
T KOG4162|consen  614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSAS  685 (799)
T ss_pred             HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHH
Confidence            44443332110                011111  1234556688888899999999898888764        467788


Q ss_pred             HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHHHhhcCC
Q 016124          272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGS  349 (394)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~--~~~~al~~~~~~~~~  349 (394)
                      .++..|.++..+|++.+|.+.|..|+.+.     |+|+   .+...+|.++...|+.. -|..  ++..++++       
T Consensus       686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv---~s~~Ala~~lle~G~~~-la~~~~~L~dalr~-------  749 (799)
T KOG4162|consen  686 VYYLRGLLLEVKGQLEEAKEAFLVALALD-----PDHV---PSMTALAELLLELGSPR-LAEKRSLLSDALRL-------  749 (799)
T ss_pred             HHHHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCc---HHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh-------
Confidence            89999999999999999999999998854     5655   46789999999999877 7776  88888874       


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          350 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       350 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                       +|...++|+.+|.++..+|+.++|.++|..++++.+.
T Consensus       750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence             4666789999999999999999999999999988654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=2.3e-16  Score=130.67  Aligned_cols=266  Identities=15%  Similarity=0.173  Sum_probs=196.8

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      +..|..+++.|+..+|.-.|+.++..        +|..+++|..||.+....++-..|+..+++++++        +|..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            45789999999999999999999873        5888999999999999999999999999999997        6788


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh--CCC-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      ..++..||..|...|.-.+|..++.+-+.......  ... ......    ...-......+..-.++|..+.....   
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~---  425 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP---  425 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC---
Confidence            89999999999999999999999998876521100  000 000000    00000000111222233333333211   


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                        ...+   ..+...||.+|...|+|++|+++|+.|+..        .|.....|+.||-.+....+..+|+..|++|++
T Consensus       426 --~~~D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  426 --TKID---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             --CCCC---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence              1122   234577999999999999999999999984        678888999999999999999999999999999


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHhCCCc
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD  329 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  329 (394)
                      +        .|..++++++||..+..+|.|++|.++|-.|+.+.+...+.....  .-.++..|-.++...++.+
T Consensus       493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            5        588889999999999999999999999999999987643322211  1234444445555556554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=8.4e-15  Score=133.07  Aligned_cols=148  Identities=12%  Similarity=-0.062  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH---HHcC-
Q 016124          230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE---IAFG-  305 (394)
Q Consensus       230 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~-  305 (394)
                      +....|..|...+++++|+.+|+.++.-....  ...+........|-..+...+++++|..++++..+...   ..++ 
T Consensus       329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~  406 (822)
T PRK14574        329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL  406 (822)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence            44556788888888888888888876521100  01122233345677889999999999999998876211   0011 


Q ss_pred             ---CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          306 ---KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       306 ---~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                         ..+|+.......++.++...|+.. +|.+.+++.+..        .|.....+..+|.++...|.+.+|+..++.+.
T Consensus       407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~-~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        407 PGKEPNDDWIEGQTLLVQSLVALNDLP-TAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence               345666778888999999999999 999999998764        35556778899999999999999999999988


Q ss_pred             HHHHHH
Q 016124          383 NLRMKY  388 (394)
Q Consensus       383 ~~~~~~  388 (394)
                      .+.+..
T Consensus       478 ~l~P~~  483 (822)
T PRK14574        478 SLAPRS  483 (822)
T ss_pred             hhCCcc
Confidence            876653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.74  E-value=2e-14  Score=111.84  Aligned_cols=283  Identities=16%  Similarity=0.133  Sum_probs=214.8

Q ss_pred             CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      +.+|..-.+++..|.+|...|+..-|+.-+.+++++        .|+...+....|.++..+|.+++|+.-|..++..- 
T Consensus        66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-  136 (504)
T KOG0624|consen   66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-  136 (504)
T ss_pred             cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-
Confidence            356777888999999999999999999999999986        36777788889999999999999999999988742 


Q ss_pred             HhcCCCCcchHh------------hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124           90 LNRGTESADLVL------------PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  157 (394)
Q Consensus        90 ~~~~~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  157 (394)
                          ++......            .+......+...|++..|+.+....+++        .|..+..+...+.+|...|+
T Consensus       137 ----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e  204 (504)
T KOG0624|consen  137 ----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGE  204 (504)
T ss_pred             ----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCc
Confidence                11111111            2233344556678999999999998886        56777788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH---
Q 016124          158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL---  234 (394)
Q Consensus       158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---  234 (394)
                      +..|+.-++.+-++..       ++   ...++.++.+++..|+.+.++...++++++     .++|......|-.+   
T Consensus       205 ~k~AI~Dlk~askLs~-------Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  205 PKKAIHDLKQASKLSQ-------DN---TEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             HHHHHHHHHHHHhccc-------cc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHH
Confidence            9999999998877643       22   345578999999999999999999999875     23333222222222   


Q ss_pred             ------HHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124          235 ------AASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  307 (394)
Q Consensus       235 ------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  307 (394)
                            +.-....++|.++++..++.++.     .+. .+........+..|+...|++.+|+....+++.+.       
T Consensus       270 ~K~les~e~~ie~~~~t~cle~ge~vlk~-----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-------  337 (504)
T KOG0624|consen  270 VKSLESAEQAIEEKHWTECLEAGEKVLKN-----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-------  337 (504)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-------
Confidence                  23334556677777766666652     111 23344455667889999999999999999988743       


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                       |+.+.++..-+.+|.....++ .|+.-|++|.+.
T Consensus       338 -~~dv~~l~dRAeA~l~dE~YD-~AI~dye~A~e~  370 (504)
T KOG0624|consen  338 -PDDVQVLCDRAEAYLGDEMYD-DAIHDYEKALEL  370 (504)
T ss_pred             -chHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHhc
Confidence             667788999999999999999 999999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6.4e-15  Score=117.29  Aligned_cols=270  Identities=14%  Similarity=0.082  Sum_probs=217.0

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |.....+..+|.+++..|++++|+..|+++..+        +|..+..+-..|..+...|+++.-..+-...+.+.+   
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---  297 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---  297 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence            445567788999999999999999999998765        477788888889999999999988877777666532   


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                           ....-++.-+...+...++..|+.+-+++++.        ++....++..-|..+...|+.++|.-.|+.|..+.
T Consensus       298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence                 22334555677788899999999999999986        44555678888999999999999999999998864


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH-HHHH-HcccHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYS-RSKNFVEAERL  250 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~  250 (394)
                                |....+|..+-.+|...|++.+|....+.++...        +..+.++..+| .++. .-.--++|..+
T Consensus       365 ----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  365 ----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             ----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence                      2336788899999999999999999999888764        33455555564 3332 22334789999


Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124          251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  330 (394)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  330 (394)
                      +++++.+        .|....+...+|.++...|.+.+++.++++.+..+     ++    ......||.++...+.+. 
T Consensus       427 ~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D----~~LH~~Lgd~~~A~Ne~Q-  488 (564)
T KOG1174|consen  427 AEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-----PD----VNLHNHLGDIMRAQNEPQ-  488 (564)
T ss_pred             HHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-----cc----cHHHHHHHHHHHHhhhHH-
Confidence            9998873        57778888999999999999999999999999865     22    234678999999999999 


Q ss_pred             HHHHHHHHHHHH
Q 016124          331 KLLELLKRVLRI  342 (394)
Q Consensus       331 ~A~~~~~~al~~  342 (394)
                      +|.++|..|+.+
T Consensus       489 ~am~~y~~ALr~  500 (564)
T KOG1174|consen  489 KAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999974

>PLN03077 Protein ECB2; Provisional

Probab=99.73  E-value=5.4e-15  Score=139.27  Aligned_cols=163  Identities=11%  Similarity=0.024  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                      |+.+...|...|+.++|+.+|++..+.     | -.|+ ..++..+...+...|++++|..+|+...+..     +..| 
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P-  623 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITP-  623 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCC-
Confidence            445555555666666666665554331     0 1121 1223344445555666666666665554211     1112 


Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124          269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  348 (394)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~  348 (394)
                      ....+..+..++.+.|++++|.+.+++.         +-.|+ ..+|..|-..+...|+.+ .+....++.+++      
T Consensus       624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~pd-~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l------  686 (857)
T PLN03077        624 NLKHYACVVDLLGRAGKLTEAYNFINKM---------PITPD-PAVWGALLNACRIHRHVE-LGELAAQHIFEL------  686 (857)
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCChH-HHHHHHHHHHhh------
Confidence            2244555666666666666666555542         11122 233444444555555555 555544444442      


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          349 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                        .|+....+..++.+|...|++++|.+..+...+
T Consensus       687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence              233455677888999999999999888777654

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=1.1e-14  Score=124.89  Aligned_cols=284  Identities=11%  Similarity=0.033  Sum_probs=194.5

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |.....+...|..+..+|+++.|..++.++.+..     ++..  ..+....+.++...|++++|...+++.++.     
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----  182 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-----  182 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence            3334445677899999999999999999987642     1111  122334588999999999999999988875     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                         .|....++..++.++...|++++|...+.+..+..     ..++... ........-....+..+++...+.++.+.
T Consensus       183 ---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~  254 (409)
T TIGR00540       183 ---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN  254 (409)
T ss_pred             ---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence               45666788899999999999999999998887651     1223222 22222222223334444555566665553


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      ..+      ..+.....+..++..+...|++++|...++++++..     ++++..... ..........++.+.+.+.+
T Consensus       255 ~p~------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       255 QPR------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             CCH------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence            221      111123455778999999999999999999998752     122211101 11223334457888888888


Q ss_pred             HHHHHHHHhhcCCCCCcch--HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124          252 RICLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  329 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  329 (394)
                      +++++        .+|...  ..+..+|.++...|++++|.++|+++....      .+|+... +..+|.++.+.|+.+
T Consensus       323 e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~  387 (409)
T TIGR00540       323 EKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKA  387 (409)
T ss_pred             HHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHH
Confidence            88876        345555  777899999999999999999999543322      1233323 558999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 016124          330 TKLLELLKRVLRIQE  344 (394)
Q Consensus       330 ~~A~~~~~~al~~~~  344 (394)
                       +|.+++++++...-
T Consensus       388 -~A~~~~~~~l~~~~  401 (409)
T TIGR00540       388 -EAAAMRQDSLGLML  401 (409)
T ss_pred             -HHHHHHHHHHHHHh
Confidence             99999999987543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03077 Protein ECB2; Provisional

Probab=99.72  E-value=7.2e-15  Score=138.43  Aligned_cols=302  Identities=14%  Similarity=0.067  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch-------------------------------HHHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-------------------------------ILLVTSLLGMA   65 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~l~   65 (394)
                      .+|+.+...|...|++++|+..|.++....   ..++.                               .....+++.+.
T Consensus       254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li  330 (857)
T PLN03077        254 ISWNAMISGYFENGECLEGLELFFTMRELS---VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI  330 (857)
T ss_pred             chhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence            457778888889999999999888876531   00110                               01233556666


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch------
Q 016124           66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------  139 (394)
Q Consensus        66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------  139 (394)
                      ..|.+.|++++|...|++..          .+ ...+|+.+...|.+.|++++|+..|++.....   ..++..      
T Consensus       331 ~~y~k~g~~~~A~~vf~~m~----------~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd~~t~~~ll  396 (857)
T PLN03077        331 QMYLSLGSWGEAEKVFSRME----------TK-DAVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPDEITIASVL  396 (857)
T ss_pred             HHHHhcCCHHHHHHHHhhCC----------CC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCCceeHHHHH
Confidence            77777777777777776532          11 23467777777888888888888877654321   011110      


Q ss_pred             -------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124          140 -------------------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  194 (394)
Q Consensus       140 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~  194 (394)
                                               ....+++.+...|.+.|++++|.+.|++..+         ++    ..+|+.+..
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d----~vs~~~mi~  463 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---------KD----VISWTSIIA  463 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------CC----eeeHHHHHH
Confidence                                     0112334444455555555555555544211         11    113344555


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH----------------------------------HHHHHHHHHHHH
Q 016124          195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV----------------------------------THLLNLAASYSR  240 (394)
Q Consensus       195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~----------------------------------~~~~~la~~~~~  240 (394)
                      .|...|+.++|+.+|++....       ..|+..                                  ...+.+...|.+
T Consensus       464 ~~~~~g~~~eA~~lf~~m~~~-------~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k  536 (857)
T PLN03077        464 GLRLNNRCFEALIFFRQMLLT-------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR  536 (857)
T ss_pred             HHHHCCCHHHHHHHHHHHHhC-------CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence            556666666666666655321       111111                                  111233455666


Q ss_pred             cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124          241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  320 (394)
Q Consensus       241 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  320 (394)
                      .|+.++|...|+..            .....+|..+...|...|+.++|+.+|++..+..   ..|+    ..++..+-.
T Consensus       537 ~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g---~~Pd----~~T~~~ll~  597 (857)
T PLN03077        537 CGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG---VNPD----EVTFISLLC  597 (857)
T ss_pred             cCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC----cccHHHHHH
Confidence            66666666655432            1234567888888999999999999998865421   1122    234666667


Q ss_pred             HHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          321 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       321 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                      .+.+.|..+ +|..+|+...+..    + -.|+ ...+..+..++.+.|++++|.+++++.
T Consensus       598 a~~~~g~v~-ea~~~f~~M~~~~----g-i~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        598 ACSRSGMVT-QGLEYFHSMEEKY----S-ITPN-LKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHhhcChHH-HHHHHHHHHHHHh----C-CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            788888888 8888888776332    1 1232 366788888999999999999888775

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.71  E-value=9e-14  Score=118.12  Aligned_cols=298  Identities=15%  Similarity=0.053  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      ........+..+...|++++|...++++++..     ++++   .++.. +..+...|++..+.....+++..    ..+
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~  108 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAP  108 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCc
Confidence            34455667888999999999999999998752     2222   33333 55666666666665555555543    234


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      .+|........+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++.....
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            56777788889999999999999999999999987        2333567888999999999999999999999886421


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH--HHHHHHHHcccHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL--NLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~  252 (394)
                            ++......+..+|.++...|++++|+..+++++...     +..+.......  .+...+...|....+..+ +
T Consensus       181 ------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~  248 (355)
T cd05804         181 ------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E  248 (355)
T ss_pred             ------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence                  223334456789999999999999999999985421     11111111111  222333344433333332 2


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      .......... +. +.........+.++...|+.++|...++.......... ..............+.++...|++. +
T Consensus       249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~  325 (355)
T cd05804         249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-T  325 (355)
T ss_pred             HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-H
Confidence            2222111110 11 22223334678888999999999999998877665410 0112234555667888999999999 9


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 016124          332 LLELLKRVLRIQEREFG  348 (394)
Q Consensus       332 A~~~~~~al~~~~~~~~  348 (394)
                      |++.+..++.....+-|
T Consensus       326 A~~~L~~al~~a~~~gg  342 (355)
T cd05804         326 ALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999998876544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.4e-15  Score=118.73  Aligned_cols=293  Identities=13%  Similarity=0.051  Sum_probs=224.7

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ....+.-....|..++...+|..|+..+..|++++        |..+..|.+.+.+++..|+|++|....++.+.+    
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~----  112 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL----  112 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec----
Confidence            34456667888999999999999999999999985        344778889999999999999999999888776    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH--------HHHHHhhCC--CchHHHHHHHHHHHHHHHCCCHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL--------KIYTKVYGE--NDGRVGMAMCSLAHAKCANGNAEEA  161 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A  161 (394)
                          .+.........+.++...++..+|...++..-        ...+.+...  ..|....+...-+.++...|++++|
T Consensus       113 ----kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a  188 (486)
T KOG0550|consen  113 ----KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA  188 (486)
T ss_pred             ----CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence                34455677788888888888888887665221        111111111  1244455566678899999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHHH
Q 016124          162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAAS  237 (394)
Q Consensus       162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~  237 (394)
                      ...--..+++..          .-..++...|.++...++.+.|+..+++++.+......    ...+.....+..-|.-
T Consensus       189 ~~ea~~ilkld~----------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  189 QSEAIDILKLDA----------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             HHHHHHHHhccc----------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            987776666422          12445567788999999999999999999986332110    0123445556667888


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124          238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  317 (394)
Q Consensus       238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  317 (394)
                      ..+.|++.+|.+.|..++.+-..    +....+..|.+.+.+....|+..+|+.-...++.+-        +....++..
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall~  326 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALLR  326 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHH
Confidence            89999999999999999985322    233456788999999999999999999999999864        667888999


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124          318 LVSIQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       318 l~~~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                      -|.++..+++++ +|++.|+++++.-
T Consensus       327 ra~c~l~le~~e-~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  327 RANCHLALEKWE-EAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence            999999999999 9999999998753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=2.4e-15  Score=124.71  Aligned_cols=270  Identities=16%  Similarity=0.057  Sum_probs=198.7

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      ..|..+++.|+..+|.-.|+.++.-        +|..+.+|..||.+....++-..|+..+++++++        +|...
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl  353 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL  353 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence            4688899999999999999998874        7889999999999999999999999999999987        67777


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      .++..||..|...|.-.+|..++.+=+.....-...... ......    ...-......+..-.++|-.+..   ... 
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~~-  425 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QLP-  425 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hCC-
Confidence            899999999999999999999998876643111000000 000000    00000000001111222222221   111 


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  301 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  301 (394)
                        ......+...||.+|...|+|++|+.+|+.|+.        ..|.....|..||-.+....+.++|+..|++|+++. 
T Consensus       426 --~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-  494 (579)
T KOG1125|consen  426 --TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-  494 (579)
T ss_pred             --CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence              113456778899999999999999999999998        468888899999999999999999999999999976 


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhcCchhhh
Q 016124          302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE--EVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                             |...++.++||..+..+|.++ +|.++|-.|+.+.++..+....  ..-.+|..|-.++...++.+-+.
T Consensus       495 -------P~yVR~RyNlgIS~mNlG~yk-EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  495 -------PGYVRVRYNLGISCMNLGAYK-EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             -------CCeeeeehhhhhhhhhhhhHH-HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                   778889999999999999999 9999999999998774332211  12244555556677777776443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.2e-15  Score=119.85  Aligned_cols=294  Identities=13%  Similarity=0.036  Sum_probs=224.0

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+.-....|..++...+|.+|+..+..|+++        .|+.+..|.+.+.+++..|+|++|....++.+.+      
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------  112 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------  112 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheec------
Confidence            44555667888999999999999999999998        3445788899999999999999999999988876      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA--------LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  207 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  207 (394)
                        .+.........+.++...++..+|...++..        +.............|........-+.++...|++++|..
T Consensus       113 --kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~  190 (486)
T KOG0550|consen  113 --KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS  190 (486)
T ss_pred             --CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence              2333345666777777777777777655421        111111111122235555556677889999999999988


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC----CCCCcchHHHHHHHHHHHhh
Q 016124          208 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG----PDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~~~~~  283 (394)
                      .--..+++        ++....++..-|.++.-.++.+.|+..|++++.+-.....    ...+.....+..-|+-.++.
T Consensus       191 ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~  262 (486)
T KOG0550|consen  191 EAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN  262 (486)
T ss_pred             HHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence            76655553        4566777888899999999999999999999985321110    01133344556678888999


Q ss_pred             cChHHHHHHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124          284 NRDKEAEKLVLEALYIREIAFGKDS-LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  362 (394)
Q Consensus       284 g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  362 (394)
                      |++..|.+.|..++.+.     |++ ...+..|.+.+.+..++|+.. +|+.-...++.+        ++....++...|
T Consensus       263 G~y~~A~E~Yteal~id-----P~n~~~naklY~nra~v~~rLgrl~-eaisdc~~Al~i--------D~syikall~ra  328 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNID-----PSNKKTNAKLYGNRALVNIRLGRLR-EAISDCNEALKI--------DSSYIKALLRRA  328 (486)
T ss_pred             cchhHHHHHHHHhhcCC-----ccccchhHHHHHHhHhhhcccCCch-hhhhhhhhhhhc--------CHHHHHHHHHHH
Confidence            99999999999999875     333 345778899999999999999 999999999976        577889999999


Q ss_pred             HHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          363 SYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       363 ~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .++...++|++|.+.|+++.+....
T Consensus       329 ~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  329 NCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999887554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=1.3e-13  Score=117.65  Aligned_cols=266  Identities=13%  Similarity=0.093  Sum_probs=186.3

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +...+......|+++.|..++.++.+..     ++. ... .....+.++...|++++|...+++..+.        .|.
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~  185 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELA-----DND-QLP-VEITRVRIQLARNENHAARHGVDKLLEV--------APR  185 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence            3444666699999999999999997642     111 112 2233488999999999999999998775        566


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      ...++..++.+|...|++++|...+.+..+..     ..++....     ++..+........+    ...+.+..+...
T Consensus       186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp  256 (398)
T PRK10747        186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS  256 (398)
T ss_pred             CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC
Confidence            67888889999999999999999998877642     11222111     22222221222222    233333332221


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  253 (394)
                      +.   .++.   ..+...++..+...|+.++|...++++++.      +.++.....   .+  ....++++++++..++
T Consensus       257 ~~---~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~--~l~~~~~~~al~~~e~  319 (398)
T PRK10747        257 RK---TRHQ---VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IP--RLKTNNPEQLEKVLRQ  319 (398)
T ss_pred             HH---HhCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hh--hccCCChHHHHHHHHH
Confidence            10   1122   334577899999999999999999988762      123322221   22  2345899999999888


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124          254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  333 (394)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~  333 (394)
                      .++        .+|+....+..+|.++...|++++|.++|+++++..        |.. ..+..++.++.+.|+.+ +|.
T Consensus       320 ~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~  381 (398)
T PRK10747        320 QIK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAA  381 (398)
T ss_pred             HHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHH
Confidence            776        467888888999999999999999999999998853        332 23568999999999999 999


Q ss_pred             HHHHHHHHHH
Q 016124          334 ELLKRVLRIQ  343 (394)
Q Consensus       334 ~~~~~al~~~  343 (394)
                      .+|++++.+.
T Consensus       382 ~~~~~~l~~~  391 (398)
T PRK10747        382 AMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhh
Confidence            9999998764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=1.6e-14  Score=114.80  Aligned_cols=182  Identities=14%  Similarity=0.076  Sum_probs=147.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      .++..+..++.+|..+...|++++|+..+++++..     .++++....++..+|.++...|++++|+..++++++..  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--  100 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--  100 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence            44556778899999999999999999999999876     34556667788999999999999999999999999873  


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHh--------CcHHHHHHHHHHHHHHHHHhhCCCchHHHH--------------HHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKE--------GKAVDAESVFSRILKIYTKVYGENDGRVGM--------------AMCSL  148 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~l  148 (394)
                         ++++....+++.+|.++...        |++++|+..+++++...     ++++....              ....+
T Consensus       101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence               44566666788999999876        88999999999998763     22322211              12467


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      |..+...|++.+|+..++++++..       |+.+....++..+|.++...|++++|..+++....
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-------PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            889999999999999999999864       33455567789999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.67  E-value=4.1e-14  Score=112.53  Aligned_cols=182  Identities=14%  Similarity=0.021  Sum_probs=146.1

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      ..+..+..++.+|..+...|++++|+..+++++..     .++++....++..+|.++...|++++|+..++++++..  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--  100 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--  100 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence            34566788999999999999999999999999876     34556666788999999999999999999999999864  


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCCccHHHH--------------HH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTH--------------LL  232 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~  232 (394)
                           |+++....++..+|.++...        |++++|+..+++++...     ++++....+              ..
T Consensus       101 -----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~  170 (235)
T TIGR03302       101 -----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKEL  170 (235)
T ss_pred             -----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHH
Confidence                 33344345667888888876        78999999999988652     122222111              23


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .+|.++...|++.+|+..+++++...     +++|....++..+|.++...|++++|..+++....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67889999999999999999998853     44577788999999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.66  E-value=1e-12  Score=110.79  Aligned_cols=325  Identities=14%  Similarity=0.049  Sum_probs=209.9

Q ss_pred             CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      ...|...+++...|..+...|+-++|..+.+.++..        ++....+|..+|.++....+|++|+++|+.|+.+  
T Consensus        35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--  104 (700)
T KOG1156|consen   35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--  104 (700)
T ss_pred             HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--
Confidence            355666666777777777788888887777776652        2334456777888888888888888888888776  


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                            .++...++..++.+...+++++.....-.+.++.        .|.....|...+..+...|++..|....+...
T Consensus       105 ------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  105 ------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             ------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  4556677778888888888887776666666554        45555678888899999999999999888877


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  249 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  249 (394)
                      +.....  ..+.......+......+....|.+++|.+.+..--.-        ..+........+.++...+++++|..
T Consensus       171 ~t~~~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  171 KTQNTS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HhhccC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            765421  22222333344455566777777777777665442211        11122234455677777777777777


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH------------------------------------------------
Q 016124          250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLY------------------------------------------------  281 (394)
Q Consensus       250 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------------------------------  281 (394)
                      .+...+..        .|+....+..+-.++.                                                
T Consensus       241 ~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~  312 (700)
T KOG1156|consen  241 VYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR  312 (700)
T ss_pred             HHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence            77665542        1222222111111111                                                


Q ss_pred             ---hhc-------------ChHHHHHHHHHHHHHHHHHcCCC------------Ch-hHHHHHHHHHHHHHHhCCCchHH
Q 016124          282 ---HLN-------------RDKEAEKLVLEALYIREIAFGKD------------SL-PVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       282 ---~~g-------------~~~~A~~~~~~a~~~~~~~~~~~------------~~-~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                         ..|             +.. -...+++.+.......++.            .| ....+++.++.-+...|+++ .|
T Consensus       313 ~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A  390 (700)
T KOG1156|consen  313 PLLSKGVPSVFKDLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VA  390 (700)
T ss_pred             HHhhcCCCchhhhhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HH
Confidence               000             011 1113333333333222222            12 23456677899999999999 99


Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      ..+...|+.        ..|...+.+..-|+++...|..++|..++.++.++..
T Consensus       391 ~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  391 LEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             HHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence            999999884        5688889999999999999999999999999987653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.65  E-value=8.9e-13  Score=111.33  Aligned_cols=323  Identities=14%  Similarity=0.053  Sum_probs=242.6

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124            9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      +-+..+.-..+..-+..+...+.++-|+..|..+++.+        |..-..+...+..-...|..++-..++++++...
T Consensus       509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~  580 (913)
T KOG0495|consen  509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC  580 (913)
T ss_pred             ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            44455566677788888888888999999999988875        2233445566666667788888888999988763


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                              |.....+...+..+...|+...|...+.++++.        +|..-.++..-..+.....+++.|..++.++
T Consensus       581 --------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  581 --------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             --------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence                    334455666778888889999999999999876        3334445555666778889999999999998


Q ss_pred             HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124          169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                      ....       +.    ..+++.-+.+...+++.++|+.+++++++.        .|.....+..+|.++..+++.+.|.
T Consensus       645 r~~s-------gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  645 RSIS-------GT----ERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             hccC-------Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHH
Confidence            7642       12    344566677888899999999999999885        4677788899999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  328 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  328 (394)
                      ..|...+.        ..|...-.|..|+.+-...|+.-.|...++++.-        .+|.....|.....+-.+.|+.
T Consensus       706 ~aY~~G~k--------~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~  769 (913)
T KOG0495|consen  706 EAYLQGTK--------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNK  769 (913)
T ss_pred             HHHHhccc--------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCH
Confidence            98887765        3466677788899999999999999998888754        3355555666667777888888


Q ss_pred             chHHHHHHHHHHHHHHhh--------c--CCC------------CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          329 DTKLLELLKRVLRIQERE--------F--GSE------------SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       329 ~~~A~~~~~~al~~~~~~--------~--~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      + .|.....+|++-+...        .  +..            ......++..+|.++....+++.|.++|.+++.+++
T Consensus       770 ~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  770 E-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             H-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            8 8888888887643221        0  000            011234677789999999999999999999999988


Q ss_pred             HHHHh
Q 016124          387 KYKQK  391 (394)
Q Consensus       387 ~~~~~  391 (394)
                      .++..
T Consensus       849 d~GD~  853 (913)
T KOG0495|consen  849 DNGDA  853 (913)
T ss_pred             ccchH
Confidence            87653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.61  E-value=7.3e-13  Score=107.43  Aligned_cols=229  Identities=15%  Similarity=0.069  Sum_probs=162.6

Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      .+..+...|.+|...|++++|...|.++.+...+.  .+....+..+...+.++... ++++|+.+++++++++...   
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~---  107 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA---  107 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc---
Confidence            34455666888889999999999999999988773  34456677788888887666 9999999999999999864   


Q ss_pred             CCchHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                       ..+...+.++..+|.+|... |++++|+++|++|+++++...  .......++..+|.++...|+|++|++.|++....
T Consensus       108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             56677788999999999999 999999999999999988754  33445678889999999999999999999998774


Q ss_pred             HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124          258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  337 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~  337 (394)
                      ...... ........+...+.++...|++..|...+++.......   -.+..-...+..|...+.. |+.+     .|.
T Consensus       185 ~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~-~D~e-----~f~  254 (282)
T PF14938_consen  185 CLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEE-GDVE-----AFT  254 (282)
T ss_dssp             CCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHT-T-CC-----CHH
T ss_pred             hhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHh-CCHH-----HHH
Confidence            322210 11123345567788999999999998888876543211   1122334455556555543 4444     366


Q ss_pred             HHHHHHHhh
Q 016124          338 RVLRIQERE  346 (394)
Q Consensus       338 ~al~~~~~~  346 (394)
                      .++.-+.++
T Consensus       255 ~av~~~d~~  263 (282)
T PF14938_consen  255 EAVAEYDSI  263 (282)
T ss_dssp             HHCHHHTTS
T ss_pred             HHHHHHccc
Confidence            666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.61  E-value=4.2e-13  Score=108.83  Aligned_cols=192  Identities=17%  Similarity=0.137  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      ...+..+...|..|...|++++|...|.++.....+..  +....+..+...+.++... ++++|+.+++++++++... 
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-  107 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-
Confidence            35566777788999999999999999999999987743  4455667777777777666 9999999999999998774 


Q ss_pred             CCCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  213 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  213 (394)
                       ......+.++..+|.+|... |++++|+++|++|+++++..    ..+.....++..+|.++...|+|++|++.|++..
T Consensus       108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             23456788899999999999 99999999999999999874    3556667888999999999999999999999987


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          214 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ....... .........+...+.+++..|++..|...+++...
T Consensus       183 ~~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  183 KKCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HTCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6421111 01123334566778899999999999988887665

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=9.3e-11  Score=98.23  Aligned_cols=349  Identities=15%  Similarity=0.143  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-----------------------HHHhCCchHHHHHHHHHHHHHHHHhh
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------------------ESRYGKTSILLVTSLLGMAKVLGSIG   72 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g   72 (394)
                      ..++..-|.+++++|+|++|+..|+..+.-.                       .+..........+.+++.+.++...|
T Consensus       110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g  189 (652)
T KOG2376|consen  110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG  189 (652)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence            4456678999999999999999999874310                       00111111235667889999999999


Q ss_pred             chhHHHHHHHHHHHHHHHhcCCCCc-------chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124           73 RAKKAVEIYHRVITILELNRGTESA-------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  145 (394)
Q Consensus        73 ~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  145 (394)
                      +|.+|++.+++++.++++.+..++.       +...+...++.++..+|+.++|...|...+...    ..|.+..+.+-
T Consensus       190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~  265 (652)
T KOG2376|consen  190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAV  265 (652)
T ss_pred             cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHh
Confidence            9999999999999888776543222       344567789999999999999999999887652    34666777777


Q ss_pred             HHHHHHHHHCCCHHH-HHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          146 CSLAHAKCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       146 ~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      +||-.+-....-++. ++..++.......+.....-.+.....++.|.+......+.-+.+.+....       . ....
T Consensus       266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-------l-p~~~  337 (652)
T KOG2376|consen  266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-------L-PGMS  337 (652)
T ss_pred             cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-------C-CccC
Confidence            777654433332331 111111111100000000001122233445666666666655555443322       1 2233


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      |..................+.+|..++...-+        .+|.. ..+...++.+...+|+++.|++.+...+......
T Consensus       338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss  409 (652)
T KOG2376|consen  338 PESLFPILLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS  409 (652)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence            33332222233333333367777777766544        34443 5567778899999999999999998555333222


Q ss_pred             cCC--CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          304 FGK--DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       304 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                      +..  ..|.   +-..+-..+.+.++.. .|...+.+|+..+..... ..+.....+..++.+-.+.|+-++|...+++.
T Consensus       410 ~~~~~~~P~---~V~aiv~l~~~~~~~~-~a~~vl~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel  484 (652)
T KOG2376|consen  410 ILEAKHLPG---TVGAIVALYYKIKDND-SASAVLDSAIKWWRKQQT-GSIALLSLMREAAEFKLRHGNEEEASSLLEEL  484 (652)
T ss_pred             hhhhccChh---HHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHhcc-cchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence            211  2233   2334455667777777 899999999998877543 33566667777888888889999999999999


Q ss_pred             HHHHHHHH
Q 016124          382 SNLRMKYK  389 (394)
Q Consensus       382 ~~~~~~~~  389 (394)
                      +...+...
T Consensus       485 ~k~n~~d~  492 (652)
T KOG2376|consen  485 VKFNPNDT  492 (652)
T ss_pred             HHhCCchH
Confidence            98665443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.58  E-value=7.3e-12  Score=107.85  Aligned_cols=288  Identities=17%  Similarity=0.164  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+.+.++..|..+++.+.|..+.++++++..       ...+.++..++.++...+++.+|+.....+++-....     
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N-----  546 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN-----  546 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----
Confidence            6678899999999999999999999988731       2345678889999999999999999999888765332     


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                         ......-..+-...++.++|+..+...+.+.+...+-... ........-+......++..+|.....++..+....
T Consensus       547 ---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~  623 (799)
T KOG4162|consen  547 ---HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ  623 (799)
T ss_pred             ---hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence               1222223334445788899999988888887743211000 011222233334445556677777776665554311


Q ss_pred             --------------ccCCCch--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          176 --------------NYMSLDD--SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       176 --------------~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                                    ...++++  ......+...+..+...+..++|..++.++-.+        .|.....++..|.++.
T Consensus       624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~  695 (799)
T KOG4162|consen  624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLE  695 (799)
T ss_pred             hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHH
Confidence                          0012221  223445567788889999999999999988775        4667888999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH--HHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDC  317 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~  317 (394)
                      ..|++.+|.+.|..++.+        +|+...+...+|.++...|+..-|..  .+..++++.        |....+|+.
T Consensus       696 ~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~  759 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYY  759 (799)
T ss_pred             HHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHH
Confidence            999999999999999884        45556677899999999999888877  888888753        455568999


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124          318 LVSIQTRLGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       318 l~~~~~~~g~~~~~A~~~~~~al~~~~  344 (394)
                      +|.++.+.|+.+ +|.++|+-++++-.
T Consensus       760 LG~v~k~~Gd~~-~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  760 LGEVFKKLGDSK-QAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHccchH-HHHHHHHHHHhhcc
Confidence            999999999999 99999999998744

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=6e-11  Score=102.50  Aligned_cols=297  Identities=15%  Similarity=0.085  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      .+++.....++...|++++|+.++......        -.+....+-..|.++...|++++|...|...+..        
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            455667788889999999999999775443        2355667788899999999999999999998876        


Q ss_pred             CcchHhhhHhHHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhCC--------Cch----------------HHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGE--------NDG----------------RVGMAMC  146 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~~~~  146 (394)
                      +|+....+..+..+.....     +.+.-...|++....+++...+        ...                .++....
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~  147 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS  147 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            5566666666666653322     3444455555443332211000        000                0111223


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-------CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          147 SLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       147 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ++-.+|....+..-...++.............       ...+.....+++.+|..|...|++++|+++.++++..    
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----  223 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----  223 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence            33333432222222222222222222111111       1234445677889999999999999999999999984    


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                          .|..+..+...|.++...|++.+|...++.+..+        +...-..-...+..+.+.|+.++|...+....+-
T Consensus       224 ----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  224 ----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence                6788899999999999999999999999988773        2222234456678889999999998877654331


Q ss_pred             HHHHcCCCCh---hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Q 016124          300 REIAFGKDSL---PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  347 (394)
Q Consensus       300 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~  347 (394)
                      ..  .+..+.   .........|.+|.+.|++. .|+..|..+.+++....
T Consensus       292 ~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~-~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  292 DV--DPLSNLNDMQCMWFETECAEAYLRQGDYG-LALKRFHAVLKHFDDFE  339 (517)
T ss_pred             CC--CcccCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHh
Confidence            10  000111   11222345689999999999 99999999998887654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN02789 farnesyltranstransferase

Probab=99.55  E-value=1.9e-11  Score=99.71  Aligned_cols=221  Identities=13%  Similarity=0.034  Sum_probs=170.4

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHh
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN   91 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~   91 (394)
                      ++...++..+-.++...+++++|+..+.+++.+        .|....++...+.++...| ++++++..+.+++..    
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----  101 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED----  101 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----
Confidence            455666666666778889999999999999987        3566778888999999998 689999999999876    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                          +|....++...+.++...|+.  ++++.++.++++.        +|....++...+.++...|++++++.++.+++
T Consensus       102 ----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I  169 (320)
T PLN02789        102 ----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL  169 (320)
T ss_pred             ----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                566677889999999888874  6778888888876        56677899999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH--
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--  240 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--  240 (394)
                      +....       +   ..+++..+.+....   |.+    ++++.+..+++..        .|....++..++.++..  
T Consensus       170 ~~d~~-------N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~  231 (320)
T PLN02789        170 EEDVR-------N---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDK  231 (320)
T ss_pred             HHCCC-------c---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCC
Confidence            86422       1   34566777776655   333    4677777777764        46666788888888877  


Q ss_pred             --cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124          241 --SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       241 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  283 (394)
                        .++..+|.+.+.+++.        ..+....++..|+.+|...
T Consensus       232 ~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        232 EALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence              3455678877777655        2456667788888888763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.55  E-value=2.2e-12  Score=109.07  Aligned_cols=313  Identities=14%  Similarity=0.057  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .++...+..-..-|..++-..++++++..+++        .-..+...+..+...|+...|...+.++.+.        +
T Consensus       551 slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~--------~  614 (913)
T KOG0495|consen  551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEA--------N  614 (913)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------C
Confidence            34445555555556666666677777665422        1223344455666667777777777776664        3


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      |..-.++..-..+.....+++.|..+|.++...         ..+..+++.-+.....+++.++|+.+++++++.+.   
T Consensus       615 pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp---  682 (913)
T KOG0495|consen  615 PNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP---  682 (913)
T ss_pred             CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC---
Confidence            334444544455566666777777777766543         12233455555666666777777777777776542   


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                             .....+..+|.++..+++.+.|.+.|...+..        -|.....+..|+.+-...|+...|...++++.-
T Consensus       683 -------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  683 -------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             -------chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence                   12344566777777777777777777665543        244445566667777777777777777766654


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH--------HcCCCC--------------hhHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI--------AFGKDS--------------LPVGEA  314 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~--------------~~~~~~  314 (394)
                              .+|.....|......-.+.|+.+.|.....+|+.-+..        +.-..+              ......
T Consensus       748 --------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV  819 (913)
T KOG0495|consen  748 --------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV  819 (913)
T ss_pred             --------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence                    34555555555556666667777776666666553210        000000              011234


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          315 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       315 ~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      +..+|.++....+++ +|.+.|.+++.+        .|+..+++..+-..+...|.-++-.+.+.+...-.+.++
T Consensus       820 llaia~lfw~e~k~~-kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG  885 (913)
T KOG0495|consen  820 LLAIAKLFWSEKKIE-KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG  885 (913)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence            667788888888888 888888888864        456667777777788888887777777777665544443

>PLN02789 farnesyltranstransferase

Probab=99.54  E-value=4.4e-11  Score=97.52  Aligned_cols=211  Identities=13%  Similarity=-0.005  Sum_probs=162.2

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC-cHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                      -.++...+.+++|+..+.+++.+        +|....++...+.++..+| ++++++..+.+++..        +|....
T Consensus        44 ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyq  107 (320)
T PLN02789         44 RAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQ  107 (320)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchH
Confidence            33445567889999999999987        6777789999999999998 689999999999876        455566


Q ss_pred             HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          144 AMCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       144 ~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      ++...+.++...|+.  ++++.++.++++...+.          ..++...+.++...|+++++++++.++++.      
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN----------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------  171 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN----------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE------  171 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence            788888888888874  77889999998854322          456788999999999999999999999885      


Q ss_pred             CCCccHHHHHHHHHHHHHHc---ccH----HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAE  290 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  290 (394)
                        ++....+++..+.+....   |.+    ++++.+..+++.+        .|....++..++.++..    .++..+|.
T Consensus       172 --d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        172 --DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             --CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence              455667888888887665   323    4677777777763        56677788889988887    34556787


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          291 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       291 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      +.+.+++.        ..+....++..|+.++...
T Consensus       242 ~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        242 SVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            77777654        2244556788888888763

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=8e-11  Score=92.66  Aligned_cols=322  Identities=14%  Similarity=0.102  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH---------
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT---------   86 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------   86 (394)
                      ...-..+|.+++..|+|++|+..|.-+.+.      .+.  ......+++.+++..|.|.+|.....++-+         
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlf  128 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLF  128 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            455678999999999999999999876541      122  234567899999999999999887765421         


Q ss_pred             -HHHHhcC--------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124           87 -ILELNRG--------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  157 (394)
Q Consensus        87 -~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  157 (394)
                       +..+...        .+-.+...-...|+.+.+..-.|++|++.|.+.+.        ++|.....-..+|.+|.++.-
T Consensus       129 hlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  129 HLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcch
Confidence             1111110        00111223334566677777778888888877764        456666666677888888877


Q ss_pred             HHHHHHHHHHHHHHHHhc-------------------------------c----------------c---------CCCc
Q 016124          158 AEEAVELYKKALRVIKDS-------------------------------N----------------Y---------MSLD  181 (394)
Q Consensus       158 ~~~A~~~~~~a~~~~~~~-------------------------------~----------------~---------~~~~  181 (394)
                      |+-+.+.+.--++....+                               .                .         .++-
T Consensus       201 ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L  280 (557)
T KOG3785|consen  201 YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL  280 (557)
T ss_pred             hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH
Confidence            776665544322211000                               0                0         0000


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      -..+..+..++...|..+++..+|..+.+.           -.|.++.-+...|.++...|+-....+.++-+-+.+.-.
T Consensus       281 ~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV  349 (557)
T KOG3785|consen  281 MKHIPEARLNLIIYYLNQNDVQEAISLCKD-----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV  349 (557)
T ss_pred             HhhChHhhhhheeeecccccHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence            011233456677777778888877766543           245555666677888888887777777666665544333


Q ss_pred             cCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          262 VGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       262 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                      .+.. ..+++.....+|.+++-..++++.+.++...-..+    ..++    ....+++.++...|++. +|.+.|-+.-
T Consensus       350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD----~Fn~N~AQAk~atgny~-eaEelf~~is  420 (557)
T KOG3785|consen  350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDD----DFNLNLAQAKLATGNYV-EAEELFIRIS  420 (557)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcc----hhhhHHHHHHHHhcChH-HHHHHHhhhc
Confidence            2211 12334445667777777778888777776544433    1222    23567788888888877 7776665432


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                             +++-.+.......||++|...++++-|-+++-+
T Consensus       421 -------~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  421 -------GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             -------ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence                   223223334455677788777777777665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.52  E-value=2.9e-12  Score=113.17  Aligned_cols=214  Identities=12%  Similarity=0.103  Sum_probs=154.5

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ++..+.++..||.+|...-+...|..+|++|.++        ++..+.+.-..+..|....+++.|....-.+-+...  
T Consensus       488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--  557 (1238)
T KOG1127|consen  488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--  557 (1238)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--
Confidence            4556677778888888877888888888888776        244455666677788888888888777433332211  


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                          .......+..+|..|...+++.+|+..|+.++..        +|....++..+|.+|...|++..|++.|.++..+
T Consensus       558 ----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L  625 (1238)
T KOG1127|consen  558 ----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL  625 (1238)
T ss_pred             ----HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence                1112234445888899999999999999999875        6777789999999999999999999999999875


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      .       |++   ....+..+.+....|+|.+|+..+...+....... +.....+.++..++..+...|=..+|..++
T Consensus       626 r-------P~s---~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~  694 (1238)
T KOG1127|consen  626 R-------PLS---KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFF  694 (1238)
T ss_pred             C-------cHh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            2       332   22346788899999999999999998877654322 122345666777777777777777777777


Q ss_pred             HHHHHHH
Q 016124          252 RICLDIM  258 (394)
Q Consensus       252 ~~a~~~~  258 (394)
                      +++++.+
T Consensus       695 eksie~f  701 (1238)
T KOG1127|consen  695 EKSIESF  701 (1238)
T ss_pred             HHHHHHH
Confidence            7766544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.49  E-value=9.4e-10  Score=93.38  Aligned_cols=319  Identities=11%  Similarity=0.087  Sum_probs=210.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +++...-+|+.+|.++....+|++|+.+|+.|+.+        .++....+..++....++++++-....-.+.++.   
T Consensus        70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---  138 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---  138 (700)
T ss_pred             cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence            44555567889999999999999999999999986        2455678899999999999999988888877775   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           .|.....|...+..+...|++..|....+...........+.......+......+....|.+++|.+.+..--.
T Consensus       139 -----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  139 -----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence                 455567788899999999999999999888777654322222223344555556677778887777776655322


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc---------
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------  241 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------  241 (394)
                      -.          ..-.......+.++..++++++|...+...+...        |+....+..+-.++..-         
T Consensus       214 ~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~  275 (700)
T KOG1156|consen  214 QI----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKA  275 (700)
T ss_pred             HH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            11          1112333567888888899999988887766532        22222111111111000         


Q ss_pred             -------------------------ccHHHH-----------------------------HHHHHHHHHHHHhhcCCC--
Q 016124          242 -------------------------KNFVEA-----------------------------ERLLRICLDIMTKTVGPD--  265 (394)
Q Consensus       242 -------------------------g~~~~A-----------------------------~~~~~~a~~~~~~~~~~~--  265 (394)
                                               .++.+.                             ..++++.+..+....++.  
T Consensus       276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~  355 (700)
T KOG1156|consen  276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM  355 (700)
T ss_pred             HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence                                     000000                             012222222222222211  


Q ss_pred             ----------C-CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124          266 ----------D-QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  334 (394)
Q Consensus       266 ----------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~  334 (394)
                                . ....++++.++.-+...|+++.|..++..|+.        ..|.....+..-|.++...|+.+ +|..
T Consensus       356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~-eAa~  426 (700)
T KOG1156|consen  356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLD-EAAA  426 (700)
T ss_pred             CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChH-HHHH
Confidence                      1 13456677889999999999999999999876        44778888888999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          335 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       335 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                      .+..+.++       +.++.. +-..-|....+.++.++|.+....
T Consensus       427 ~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk  464 (700)
T KOG1156|consen  427 WLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK  464 (700)
T ss_pred             HHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence            99888764       223221 122445666666777776655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.49  E-value=1.2e-10  Score=100.57  Aligned_cols=291  Identities=16%  Similarity=0.103  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      +++.....++...|++++|+.++++....        -.+....+-..|.++..+|++++|...|...++.        +
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------N   68 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------N   68 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence            34556678889999999999999775432        4566778888999999999999999999999886        3


Q ss_pred             hHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhccc-------CCCchHH--H-------------HHHHHH
Q 016124          139 GRVGMAMCSLAHAKCAN-----GNAEEAVELYKKALRVIKDSNY-------MSLDDSI--M-------------ENMRID  191 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~--~-------------~~~~~~  191 (394)
                      |+....+..+..+....     .+.+.-..+|++....+++...       ..++...  .             .....+
T Consensus        69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~  148 (517)
T PF12569_consen   69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN  148 (517)
T ss_pred             CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            44444555555554222     2345556666655443322100       0000000  0             011122


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhh------C------CCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          192 LAELLHIVGRGQEGRELLEECLLITEKYK------G------KEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                      +-.+|.   +..++.- +.+.+.-.....      .      ...|. ...+++.++..|-..|++++|+++++++++  
T Consensus       149 lk~Ly~---d~~K~~~-i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--  222 (517)
T PF12569_consen  149 LKPLYK---DPEKAAI-IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--  222 (517)
T ss_pred             HHHHHc---ChhHHHH-HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--
Confidence            222222   2222222 222222111111      0      11222 356788999999999999999999999998  


Q ss_pred             HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                            ..|.....+...|.++.+.|++.+|...++.|..+-        ...--.-...+..+.+.|+.+ +|...+..
T Consensus       223 ------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~LRa~~~e-~A~~~~~~  287 (517)
T PF12569_consen  223 ------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLLRAGRIE-EAEKTASL  287 (517)
T ss_pred             ------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHHHCCCHH-HHHHHHHh
Confidence                  468889999999999999999999999999987643        111123345677788889888 88765543


Q ss_pred             HHHHHHhhcC-C-CCH---HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124          339 VLRIQEREFG-S-ESE---EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       339 al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                          +.+.-. + .+.   .........|.+|.+.|++..|+..|..+......+.+
T Consensus       288 ----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  288 ----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             ----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence                322111 0 111   12334456799999999999999999999998887653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=1.1e-09  Score=87.77  Aligned_cols=302  Identities=15%  Similarity=0.073  Sum_probs=187.8

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..-|..-...|+|.+|.....+.-+.        .+.-..++..-+..-..+|+++.+-.+..++-+..       ..+.
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~~  152 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDDT  152 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCch
Confidence            34455555667788877777664432        22223345556777788888888888888876641       2233


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      .......+.+....|+++.|..-..++++.        .|....++.....+|...|++.+...++.+.-+.-      -
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~  218 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L  218 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence            455667788888888888888888888776        33334456667788888888888887777654421      1


Q ss_pred             CchHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       180 ~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      -+++.... +-+.+.  ++...++-..+..+.+---....+.  ..+|.   ....++.-+...|+.++|.+..+++++.
T Consensus       219 l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~  292 (400)
T COG3071         219 LSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKR  292 (400)
T ss_pred             CChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            11122111 122221  1222222222222111110111111  12333   3445677788999999999999998873


Q ss_pred             HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124          258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  337 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~  337 (394)
                      .      .++.   ....++  ...-+++..=++..++.++.        ||+....+..||.++.+.+.+. +|..+++
T Consensus       293 ~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~-kA~~~le  352 (400)
T COG3071         293 Q------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWG-KASEALE  352 (400)
T ss_pred             c------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHH-HHHHHHH
Confidence            1      1222   111111  23456666666666665552        3444467889999999999999 9999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          338 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       338 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      .+++...         ....+..+|.++.+.|+..+|.+.+++++.+.
T Consensus       353 aAl~~~~---------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         353 AALKLRP---------SASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHhcCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            8887422         14567889999999999999999999998554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.48  E-value=1.1e-12  Score=84.16  Aligned_cols=77  Identities=18%  Similarity=0.412  Sum_probs=70.8

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      ||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|+.++++++++.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            6899999999999999999999999999999999 6666888888999999999999999999999999999999865

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.46  E-value=3.3e-10  Score=100.56  Aligned_cols=235  Identities=12%  Similarity=0.100  Sum_probs=185.3

Q ss_pred             hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124           72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  151 (394)
Q Consensus        72 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  151 (394)
                      .+...|...+-+++.+        ++..+.++..||.+|....+...|..+|.+|.++        ++..+.+....+..
T Consensus       472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt  535 (1238)
T KOG1127|consen  472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT  535 (1238)
T ss_pred             hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence            3466777777777765        5678889999999999999999999999999987        55666777889999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      |....+++.|......+-+...        .......+..+|..|...++...|+..++.++..        +|....++
T Consensus       536 yae~~~we~a~~I~l~~~qka~--------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W  599 (1238)
T KOG1127|consen  536 YAEESTWEEAFEICLRAAQKAP--------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW  599 (1238)
T ss_pred             hhccccHHHHHHHHHHHhhhch--------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence            9999999999988544433221        1122233445888999999999999999999874        67778899


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  311 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  311 (394)
                      ..+|.+|...|++..|++.|.++..+        .|......+..+.+....|++.+|+..+...+.....-. +.....
T Consensus       600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gL  670 (1238)
T KOG1127|consen  600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGL  670 (1238)
T ss_pred             HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhH
Confidence            99999999999999999999998773        466667778889999999999999999998877654321 222345


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124          312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  348 (394)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~  348 (394)
                      +.++..++..+...|=.. +|..+++++++.+.-...
T Consensus       671 aE~~ir~akd~~~~gf~~-kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  671 AESVIRDAKDSAITGFQK-KAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence            667777777777777666 899999999887765443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.5e-09  Score=89.94  Aligned_cols=329  Identities=14%  Similarity=0.086  Sum_probs=198.4

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-----------
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL-----------   88 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------   88 (394)
                      +.-+.|.++.+..++|+..++-+        .+.+   ..++...|.++++.|+|++|...|+....-.           
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~--------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n  151 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGL--------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN  151 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcc--------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            45566666677777766666511        1111   2245556889999999999999998764310           


Q ss_pred             ------------HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-------HHHHHHHHHH
Q 016124           89 ------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RVGMAMCSLA  149 (394)
Q Consensus        89 ------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la  149 (394)
                                  .+............+++.+.++...|+|.+|++.+++++.++++.+..++.       .+..+...++
T Consensus       152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla  231 (652)
T KOG2376|consen  152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA  231 (652)
T ss_pred             HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence                        000111122355678899999999999999999999999998877554332       2455678899


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHH----HHHHHhhCCCC
Q 016124          150 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELLEECL----LITEKYKGKEH  224 (394)
Q Consensus       150 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~----~~~~~~~~~~~  224 (394)
                      .++..+|+..+|...|...+...      ..|.+..+.+-+|+-.+-....-++. ++..++.-.    +.....+  .+
T Consensus       232 yVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~  303 (652)
T KOG2376|consen  232 YVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SK  303 (652)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HH
Confidence            99999999999999999988753      45666666666776554433332331 111111100    0000001  11


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      ...-.++.+.+.+.+..+.-+.+.+....        ..+..|..................+.+|.+++....+      
T Consensus       304 ~qk~~i~~N~~lL~l~tnk~~q~r~~~a~--------lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------  369 (652)
T KOG2376|consen  304 KQKQAIYRNNALLALFTNKMDQVRELSAS--------LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------  369 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--------CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc------
Confidence            22333455566665555555554443321        1233443333222333333333356777777666543      


Q ss_pred             CCCChhH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          305 GKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG--SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       305 ~~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                        .+|.. ..+...++.+....|+++ .|++.+...+......+.  ...|..+   ..+-.++...+..+-|...+.++
T Consensus       370 --~~p~~s~~v~L~~aQl~is~gn~~-~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~A  443 (652)
T KOG2376|consen  370 --GHPEKSKVVLLLRAQLKISQGNPE-VALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSA  443 (652)
T ss_pred             --cCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHH
Confidence              33433 556778899999999999 999999855533322221  1234433   33455677788888888888888


Q ss_pred             HHHHHH
Q 016124          382 SNLRMK  387 (394)
Q Consensus       382 ~~~~~~  387 (394)
                      +....+
T Consensus       444 i~~~~~  449 (652)
T KOG2376|consen  444 IKWWRK  449 (652)
T ss_pred             HHHHHH
Confidence            876654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=3.7e-11  Score=107.70  Aligned_cols=157  Identities=11%  Similarity=0.040  Sum_probs=130.2

Q ss_pred             hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 016124          113 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  192 (394)
Q Consensus       113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  192 (394)
                      .+....+...+-++++..+.     -+....++.+||.+....|++++|...++.++++.       |++   ..+..++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~---~~a~~~~  126 (694)
T PRK15179         62 HAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------PDS---SEAFILM  126 (694)
T ss_pred             hhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCc---HHHHHHH
Confidence            34444444555555555443     35557789999999999999999999999999864       333   4566889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 016124          193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  272 (394)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  272 (394)
                      +.++.+.+++++|+..+++++..        .|+....+..+|.++...|++++|+..|++++.        .+|+...+
T Consensus       127 a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~  190 (694)
T PRK15179        127 LRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENG  190 (694)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHH
Confidence            99999999999999999999874        678888999999999999999999999999987        46777889


Q ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          273 MLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      +.++|.++...|+.++|...|+++++..
T Consensus       191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        191 YVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998865

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.44  E-value=8.4e-13  Score=84.63  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=71.9

Q ss_pred             ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ||.++.++.++|.++...|+++ +|+++|++++++ .+..|+++|.++.++.++|.++...|++++|++++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            6888999999999999999999 999999999999 66678888899999999999999999999999999999999875

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=9.6e-11  Score=105.11  Aligned_cols=158  Identities=11%  Similarity=0.079  Sum_probs=132.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 016124          154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  233 (394)
Q Consensus       154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (394)
                      ..+....+...+-+++...++       .+....++.+||.+....|++++|..+++.++++        .|+...+..+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~  125 (694)
T PRK15179         61 RHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFIL  125 (694)
T ss_pred             HhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence            334444444445555555443       1222567799999999999999999999999986        5788889999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 016124          234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE  313 (394)
Q Consensus       234 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  313 (394)
                      ++.++.+.+++++|...+++++.        ..|+....+..+|.++...|++++|+.+|++++.        .+|+...
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~  189 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFS--------GGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFEN  189 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHH
Confidence            99999999999999999999998        4688889999999999999999999999999987        2355667


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124          314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                      ++..+|.++...|+.+ +|...|+++++..
T Consensus       190 ~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~  218 (694)
T PRK15179        190 GYVGWAQSLTRRGALW-RARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHHhh
Confidence            8999999999999999 9999999999864

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.41  E-value=3.9e-11  Score=109.77  Aligned_cols=361  Identities=15%  Similarity=0.123  Sum_probs=271.7

Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      +......+++.+|...=++++++.+...+.++|+....+..++..++......+|+.+-.+++.+.....+..+|..+..
T Consensus       672 ~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~  751 (1236)
T KOG1839|consen  672 AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAAT  751 (1236)
T ss_pred             ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccch
Confidence            45555678888899999999999999999999999999999997788888889999999999998877777666666654


Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---CCCHHH-------------------
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNAEE-------------------  160 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~-------------------  160 (394)
                      +.+....-...|  +-+......+++...+..+.++...+.+ ..+...+..   ......                   
T Consensus       752 ~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g  828 (1236)
T KOG1839|consen  752 YINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAG  828 (1236)
T ss_pred             hhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccC
Confidence            444333322233  6667777777776666655555444333 222111111   000000                   


Q ss_pred             ---------------------------------HH--HHHHHHHH--------------------HHHhcccCCC-----
Q 016124          161 ---------------------------------AV--ELYKKALR--------------------VIKDSNYMSL-----  180 (394)
Q Consensus       161 ---------------------------------A~--~~~~~a~~--------------------~~~~~~~~~~-----  180 (394)
                                                       +.  ....++..                    ...+......     
T Consensus       829 ~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks  908 (1236)
T KOG1839|consen  829 TPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKS  908 (1236)
T ss_pred             CCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCC
Confidence                                             00  00000000                    0000000000     


Q ss_pred             ----------------chH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124          181 ----------------DDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  242 (394)
Q Consensus       181 ----------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  242 (394)
                                      ..|  ..+.-....+......|.+.+|.+ ..+++.......+.-||..+..+..++.++...|
T Consensus       909 ~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~  987 (1236)
T KOG1839|consen  909 EFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG  987 (1236)
T ss_pred             CCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc
Confidence                            000  011111234555556677888888 8888888888888889999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 016124          243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ  322 (394)
Q Consensus       243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (394)
                      +.++|+..-.++.-+.++..|.+++.....+.+++...+..++...|...+.++.....-.++++||..+.+..+++.++
T Consensus       988 d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~ 1067 (1236)
T KOG1839|consen  988 DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLL 1067 (1236)
T ss_pred             chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             HHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          323 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       323 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      ...++++ .|+.+.+.|+....+++++....+..++..+++++...+++..|....+....+..+.
T Consensus      1068 ~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1068 LGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred             hhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence            9999999 9999999999999999999988999999999999999999999999888888776654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.39  E-value=3.2e-11  Score=86.92  Aligned_cols=125  Identities=14%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc
Q 016124          162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  241 (394)
Q Consensus       162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  241 (394)
                      ..++++++++.       |+.      +..+|.++...|++++|+..|++++..        .|....++.++|.++...
T Consensus        13 ~~~~~~al~~~-------p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLSVD-------PET------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHHcC-------HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH
Confidence            35677777642       221      356899999999999999999999874        577788999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124          242 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  321 (394)
Q Consensus       242 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  321 (394)
                      |++++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+.     ++++   ..+...+.+
T Consensus        72 g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~---~~~~~~~~~  135 (144)
T PRK15359         72 KEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADA---SWSEIRQNA  135 (144)
T ss_pred             hhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCh---HHHHHHHHH
Confidence            9999999999999983        57778899999999999999999999999999865     4443   345555554


Q ss_pred             HH
Q 016124          322 QT  323 (394)
Q Consensus       322 ~~  323 (394)
                      ..
T Consensus       136 ~~  137 (144)
T PRK15359        136 QI  137 (144)
T ss_pred             HH
Confidence            43

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.39  E-value=6.4e-12  Score=90.56  Aligned_cols=95  Identities=13%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +..+|..+...|++++|+.+|++++.+        +|....++..+|.++...|++++|+..|++++.+        .|.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence            557899999999999999999999875        3556788999999999999999999999999986        567


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ...+++++|.++...|++++|+..|++++.+
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7889999999999999999999999999987

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=5.8e-10  Score=87.92  Aligned_cols=312  Identities=16%  Similarity=0.053  Sum_probs=186.7

Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHh
Q 016124           26 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  105 (394)
Q Consensus        26 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  105 (394)
                      +....+|.-|+..++-.+..-       ..........+|.|++..|+|++|...|.-+..-        +...+....+
T Consensus        32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vn   96 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVN   96 (557)
T ss_pred             HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchh
Confidence            456778999999888776542       2222345667899999999999999999876541        2233567788


Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHH----------HHHhhCCC---------chHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124          106 LGSLFIKEGKAVDAESVFSRILKI----------YTKVYGEN---------DGRVGMAMCSLAHAKCANGNAEEAVELYK  166 (394)
Q Consensus       106 l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  166 (394)
                      |+.+++..|.|.+|.....++-+.          .-+. +..         -.+...-...+|.+.+..-.|.+|++.|.
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk  175 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK  175 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877654211          1110 100         01122334566777777778888888888


Q ss_pred             HHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH
Q 016124          167 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE  246 (394)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  246 (394)
                      +.+.          +++.....-.++|.+|.++.-++-+.+.+.--+.        .+|+...+.+..+....+.=+-..
T Consensus       176 rvL~----------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--------q~pdStiA~NLkacn~fRl~ngr~  237 (557)
T KOG3785|consen  176 RVLQ----------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--------QFPDSTIAKNLKACNLFRLINGRT  237 (557)
T ss_pred             HHHh----------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--------hCCCcHHHHHHHHHHHhhhhccch
Confidence            8775          3334444557789999999988888776654443        244444444444444433321111


Q ss_pred             HHHHHHHH-----------HHHHH-------------hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          247 AERLLRIC-----------LDIMT-------------KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       247 A~~~~~~a-----------~~~~~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                      |..-....           -.+.+             +.+++--..+..+..+|...|..+++..+|..+.+..      
T Consensus       238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl------  311 (557)
T KOG3785|consen  238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL------  311 (557)
T ss_pred             hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc------
Confidence            21111111           11111             0111111234567788999999999999998876542      


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC--------------------------------
Q 016124          303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE--------------------------------  350 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~--------------------------------  350 (394)
                        .|..|   .-+..-|.+....|+.. ...+.++-|.+.++-+-+..                                
T Consensus       312 --~PttP---~EyilKgvv~aalGQe~-gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi  385 (557)
T KOG3785|consen  312 --DPTTP---YEYILKGVVFAALGQET-GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI  385 (557)
T ss_pred             --CCCCh---HHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23333   33555666666666654 44444444443332211100                                


Q ss_pred             ---CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          351 ---SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       351 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                         ....-....++|.++...|++.+|.++|-+...
T Consensus       386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~  421 (557)
T KOG3785|consen  386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG  421 (557)
T ss_pred             HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence               000012345678889999999999999887653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.35  E-value=2.3e-10  Score=103.69  Aligned_cols=249  Identities=13%  Similarity=0.054  Sum_probs=170.4

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      -+|....++..|...+...+++++|...++.+++.        +|.....+..+|.++...+++.++.-.  .++.+...
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            46777889999999999999999999999988775        566777888999999999999888777  66665443


Q ss_pred             cccCC---------CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHH
Q 016124          175 SNYMS---------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  245 (394)
Q Consensus       175 ~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  245 (394)
                      .....         .+.+.--.++..+|.+|..+|+.++|...++++++.        +|..+.+++++|..|... +.+
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHH
Confidence            20000         001111246788999999999999999999999985        477888999999999999 999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          246 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       246 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      +|++++.+++..+-..  .........|..+  +.....+.+.=....++.+..    .  ........+..+-..|...
T Consensus       167 KA~~m~~KAV~~~i~~--kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~----~--~~~~~~~~~~~l~~~y~~~  236 (906)
T PRK14720        167 KAITYLKKAIYRFIKK--KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGH----R--EFTRLVGLLEDLYEPYKAL  236 (906)
T ss_pred             HHHHHHHHHHHHHHhh--hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhh----h--ccchhHHHHHHHHHHHhhh
Confidence            9999999998854322  1111111112111  111222222222222222221    1  1233455677788889999


Q ss_pred             CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          326 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       326 g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                      .+++ +++.+++.+++..        |....+...++.+|.  +.|.. ...++..+.+
T Consensus       237 ~~~~-~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        237 EDWD-EVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             hhhh-HHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            9999 9999999999752        334566888888888  55555 5566665554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.33  E-value=9.7e-11  Score=88.56  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=131.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|....+ ..++..+...|+-+.+..+..++...        ++.....+..+|...+..|++.+|+..++++...    
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence            4444455 67778888888888887777765432        2333445555899999999999999999999876    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                          .|.....++.+|.+|.+.|++++|..-|.+++++.        +....+.+|+|..+.-.|+++.|..++..+...
T Consensus       130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                56778899999999999999999999999999984        233357899999999999999999999998763


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                             ++.+   ..+..|++.+...+|++++|.....+
T Consensus       198 -------~~ad---~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 -------PAAD---SRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -------CCCc---hHHHHHHHHHHhhcCChHHHHhhccc
Confidence                   2222   23458999999999999999886543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.33  E-value=9.3e-10  Score=99.88  Aligned_cols=251  Identities=14%  Similarity=0.051  Sum_probs=172.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      ++.-+|....++..|...+...+++++|+..++.+++.        +|.....++.+|.++...+++.++...  .++..
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            34557888889999999999999999999999988775        466677888899999999998888766  55544


Q ss_pred             HHHhcC-----------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124           88 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus        88 ~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  156 (394)
                      ......           .+.+..-.+++.+|.||-.+|+.++|...+++++++        +|..+.+++++|..|... 
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence            322110           012233368889999999999999999999999987        467778899999999999 


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      ++++|+.++.+|+...-..    .........|.  -.+.....+.+.=..+.++...    ..  ........+.-+=.
T Consensus       164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~  231 (906)
T PRK14720        164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYE  231 (906)
T ss_pred             hHHHHHHHHHHHHHHHHhh----hcchHHHHHHH--HHHhcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHH
Confidence            9999999999998865432    11111111111  1122222233322222222221    11  12234455666678


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .|...++|++++.+++.+++.        .+....+...++.+|.  +.|.. ...+++.+++.
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s  284 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS  284 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence            889999999999999999984        3455667788888887  44444 55566655543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=5.5e-09  Score=80.60  Aligned_cols=206  Identities=17%  Similarity=0.113  Sum_probs=115.5

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..|.....+..+|.+|+...+|..|..+|++.-..        .|.........+..++..+.+.+|+.......+    
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D----  106 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD----  106 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----
Confidence            34444444555666666666666666666554332        233333344445555555555555544433211    


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                          ++.....++..-+.+.+..+++..+..+.++.          .....+....+.|.+.++.|+++.|.+-|+.+++
T Consensus       107 ----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~Ad~~in~gCllykegqyEaAvqkFqaAlq  172 (459)
T KOG4340|consen  107 ----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ  172 (459)
T ss_pred             ----CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence                01111122222233334444444443333221          0123445677888888999999999999999988


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----------CC-----Cc------cHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----------KE-----HP------SFVT  229 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~-----~~------~~~~  229 (394)
                      .       +.-.|.++   ++++.+++..|+++.|+++..+.++.-.+..+          .+     ++      ....
T Consensus       173 v-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e  242 (459)
T KOG4340|consen  173 V-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE  242 (459)
T ss_pred             h-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence            5       23344443   78889999999999999988887765433211          00     00      1233


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHH
Q 016124          230 HLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       230 ~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                      +++..+.++.+.|+++.|.+.+.
T Consensus       243 AfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  243 AFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             HhhhhhhhhhhcccHHHHHHHhh
Confidence            45555777888888888876654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.32  E-value=2e-10  Score=81.03  Aligned_cols=107  Identities=11%  Similarity=0.131  Sum_probs=96.2

Q ss_pred             cCCCc-hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124            8 LKDDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus         8 l~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      +.+.+ ++..+.++.+|..++..|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~   97 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ   97 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34455 777788899999999999999999999988775        467788999999999999999999999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      +        .|+.+..+.++|.|+...|+.+.|.+.|+.++..+
T Consensus        98 L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         98 I--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             c--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            7        46677889999999999999999999999999986

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.31  E-value=2.3e-10  Score=86.61  Aligned_cols=164  Identities=20%  Similarity=0.143  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      |....+ ..++..+...|+-+.+..+..++...        ++.....+..+|......|+|.+|+..++++...     
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            334444 77888899999999888887775543        4444556666899999999999999999999875     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                         .|....+++.+|.+|.+.|++++|...|.+++++...       .+   .+.+|+|..+...|+++.|..++..+..
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-------~p---~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-------EP---SIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-------Cc---hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence               5666778999999999999999999999999998633       22   2448999999999999999999998865


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  253 (394)
                      .        .+....+..+++.+....|++++|.....+
T Consensus       197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            2        344556788999999999999999876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.30  E-value=2e-10  Score=87.46  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHH-HHhCc--HHHHHHHHHHHHHHHH
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYT  131 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~  131 (394)
                      |.....+..+|.++...|++++|+..|++++.+        .|.....+..+|.++ ...|+  +++|...+++++..  
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--  139 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--  139 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--
Confidence            455678999999999999999999999999987        566778889999975 67787  59999999999986  


Q ss_pred             HhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                            +|....++..+|..+...|++++|+.+++++++...
T Consensus       140 ------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        140 ------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             ------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                  455567899999999999999999999999999753

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.30  E-value=1e-09  Score=100.88  Aligned_cols=209  Identities=19%  Similarity=0.209  Sum_probs=185.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  225 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  225 (394)
                      ...+......|.+.+|.+ .-+++......  .+.-++....++..++.++...|+.++|+.+-.++.-+.++..|.+++
T Consensus       936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            334555566777888888 77777766544  455677888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124          226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  305 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  305 (394)
                      .....+.+++......++...|...+.++..+..-..+++||..+.+..+++.++...++++.|+.+++.|+.......+
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 016124          306 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL  358 (394)
Q Consensus       306 ~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  358 (394)
                      +.+..++.++..++.++...+++. .|+...+....++...+|.+++.+..+.
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence            999999999999999999999999 9999999999999999999987665543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.30  E-value=2.4e-08  Score=85.09  Aligned_cols=338  Identities=12%  Similarity=0.075  Sum_probs=207.6

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH--HHHHHHHhh-------------chhH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG--MAKVLGSIG-------------RAKK   76 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g-------------~~~~   76 (394)
                      +......+..||..|.+.|.+++|.+.|++++......-  +-.....++..  -..+...++             +.+-
T Consensus       244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~  321 (835)
T KOG2047|consen  244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL  321 (835)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence            445677889999999999999999999999987543221  11111111111  111111111             1111


Q ss_pred             HHHHHHHHHHHHHH----hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 016124           77 AVEIYHRVITILEL----NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  152 (394)
Q Consensus        77 A~~~~~~al~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  152 (394)
                      ....|+..+....-    ..-..+|.....+.  -.+-...|+..+-+..|.+|+....-......  ....+..+|..|
T Consensus       322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs--~~~Lw~~faklY  397 (835)
T KOG2047|consen  322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGS--PGTLWVEFAKLY  397 (835)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCCCC--hhhHHHHHHHHH
Confidence            12222222221100    00011233333332  33445568888889999998875432212222  345678899999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----hhCCCCccH-
Q 016124          153 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----YKGKEHPSF-  227 (394)
Q Consensus       153 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~-  227 (394)
                      ...|+.+.|...++++...      .-+.-..++.++.+.|..-....+++.|..+.+.|..+-..    .+...+|.. 
T Consensus       398 e~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~  471 (835)
T KOG2047|consen  398 ENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA  471 (835)
T ss_pred             HhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence            9999999999999999875      22344556788889999989999999999999988754221    111222322 


Q ss_pred             -----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          228 -----VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       228 -----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                           ..++...+.+....|-++.....|++.+++.        ..+.....|.|..+....-++++.+.|++.+.++  
T Consensus       472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF--  541 (835)
T KOG2047|consen  472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLF--  541 (835)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC--
Confidence                 2345556666677777777778888887753        2334556788888888889999999999988876  


Q ss_pred             HcCCCChhHHHHHHHH---HHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHHHHHhcCchhhhhhH
Q 016124          303 AFGKDSLPVGEALDCL---VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML-TLKKVVSYLDKLGRKEEKFPLK  378 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~l---~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~  378 (394)
                          ..|.+...|...   ..........+ .|..+|++|++.+       .|.... .+...+.+-...|--..|+..|
T Consensus       542 ----k~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiy  609 (835)
T KOG2047|consen  542 ----KWPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIY  609 (835)
T ss_pred             ----CCccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                234444444432   22222222355 8889999998742       344443 3444566666778778888888


Q ss_pred             HHHHH
Q 016124          379 KRLSN  383 (394)
Q Consensus       379 ~~a~~  383 (394)
                      ++|..
T Consensus       610 erat~  614 (835)
T KOG2047|consen  610 ERATS  614 (835)
T ss_pred             HHHHh
Confidence            87643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=2.7e-08  Score=87.25  Aligned_cols=260  Identities=12%  Similarity=0.085  Sum_probs=155.8

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH----HHHHhhCCCchH---------HHHHHHHHHHHHHHCCCHHHH
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----IYTKVYGENDGR---------VGMAMCSLAHAKCANGNAEEA  161 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A  161 (394)
                      +.......|++.+.-+...++.+.|+++|+++-.    +.+-. ..+.+.         ....+...|......|+.+.|
T Consensus       853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA  931 (1416)
T KOG3617|consen  853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA  931 (1416)
T ss_pred             cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence            3445667889999999999999999999998632    21111 111111         112456667778888999999


Q ss_pred             HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc
Q 016124          162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  241 (394)
Q Consensus       162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  241 (394)
                      +.+|..|-+.                  +.+.++..-+|+.++|..+.++.-             ...+.+.||+.|...
T Consensus       932 l~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~  980 (1416)
T KOG3617|consen  932 LSFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYEND  980 (1416)
T ss_pred             HHHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhh
Confidence            9998887653                  445566677778777766554421             123556788888888


Q ss_pred             ccHHHHHHHHHHHHHH------HHhhcCCCC------CcchHHHHHHHHHHHhhc-ChHHHHHHHHHH------------
Q 016124          242 KNFVEAERLLRICLDI------MTKTVGPDD------QSISFPMLHLGITLYHLN-RDKEAEKLVLEA------------  296 (394)
Q Consensus       242 g~~~~A~~~~~~a~~~------~~~~~~~~~------~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a------------  296 (394)
                      |++.+|+.+|.++...      +++..-.+.      .....-....|..|...| +.+.|..+|.+|            
T Consensus       981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen  981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence            8888888887766432      222100000      000001122344455555 556666655443            


Q ss_pred             ------HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH------HHHHHHhh-----------cC-----
Q 016124          297 ------LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR------VLRIQERE-----------FG-----  348 (394)
Q Consensus       297 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~------al~~~~~~-----------~~-----  348 (394)
                            +++..+-+.++  ..+..+..-+..+....+++ +|..++-.      |+.+....           ..     
T Consensus      1061 tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred             hcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence                  22222222222  12345666777888888888 88776544      44433211           11     


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          349 -SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       349 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                       ++......++..+|.++.++|.|..|-+-|.+|-..-+.++
T Consensus      1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMR 1179 (1416)
T ss_pred             CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHH
Confidence             11134457888999999999999999999888765544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.28  E-value=3.5e-08  Score=79.35  Aligned_cols=274  Identities=14%  Similarity=0.087  Sum_probs=184.3

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +...-.+..-+.....+|+++.+-.++.++-+..      ++ .........+.+....|+++.|..-..++++.     
T Consensus       115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----  182 (400)
T COG3071         115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GD-DTLAVELTRARLLLNRRDYPAARENVDQLLEM-----  182 (400)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----
Confidence            3334455666788889999999999999887642      11 23445667889999999999999999988876     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH--HHHHCCCHHHHHH---HHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH--AKCANGNAEEAVE---LYKK  167 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~---~~~~  167 (394)
                         .|....++.....+|...|++.+...+..+.-+..  .  -+++... -+-+.+.  ++...++-..+..   +.+.
T Consensus       183 ---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~--l~~~e~~-~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         183 ---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L--LSDEEAA-RLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             ---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--CChHHHH-HHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence               45566777778899999999999888877654421  1  1122222 2222221  1222222222222   2221


Q ss_pred             HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124          168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  247 (394)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  247 (394)
                      .-...       ..+|.+.   ..++.-+...|+.++|.++.+++++..      .++.   ....++  ...-+++..=
T Consensus       255 ~pr~l-------r~~p~l~---~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l  313 (400)
T COG3071         255 QPRKL-------RNDPELV---VAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIP--RLRPGDPEPL  313 (400)
T ss_pred             ccHHh-------hcChhHH---HHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHh--hcCCCCchHH
Confidence            11111       1223222   557888899999999999999988742      1222   111111  2345677776


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124          248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  327 (394)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  327 (394)
                      ++..++.+.        .+|+....+..||.++...+.|.+|..+|+.+++..         ..+..+..+|.++.+.|+
T Consensus       314 ~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~  376 (400)
T COG3071         314 IKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCC
Confidence            666666665        456666888999999999999999999999888743         123457889999999999


Q ss_pred             CchHHHHHHHHHHHHHHh
Q 016124          328 DDTKLLELLKRVLRIQER  345 (394)
Q Consensus       328 ~~~~A~~~~~~al~~~~~  345 (394)
                      .. +|.+.+++++....+
T Consensus       377 ~~-~A~~~r~e~L~~~~~  393 (400)
T COG3071         377 PE-EAEQVRREALLLTRQ  393 (400)
T ss_pred             hH-HHHHHHHHHHHHhcC
Confidence            99 999999999965443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.28  E-value=3.2e-09  Score=81.62  Aligned_cols=169  Identities=16%  Similarity=0.138  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      ...+...|......|++.+|+..|++.+...     +.++....+...+|.++...|++++|+..+++.+...     |.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3456789999999999999999999988753     4567788899999999999999999999999998854     67


Q ss_pred             CCcchHHHHHHHHHHHhhc-----------ChHHHHHHHHHHHHHHHHHcCCCChhHHH--------------HHHHHHH
Q 016124          266 DQSISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVS  320 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~  320 (394)
                      ++....+++.+|.++....           ...+|+..|+..+...     |+++....              --..+|.
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888889999998876643           2346777777777655     55544322              2345788


Q ss_pred             HHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          321 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       321 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                      .|.+.|.+. .|+..++.+++-+     ++.+....++..++..|...|..+.|.
T Consensus       150 ~Y~~~~~y~-aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  150 FYYKRGKYK-AAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHCTT-HH-HHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHcccHH-HHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999 9999999998865     567888889999999999999988543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.28  E-value=3.9e-09  Score=81.14  Aligned_cols=166  Identities=19%  Similarity=0.143  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      ...++..|......|++.+|+..|++.+...       |.++....+...+|.++...|++++|+..+++.+...     
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----
Confidence            4567889999999999999999999998865       3445556777899999999999999999999988764     


Q ss_pred             CCCccHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhhcCCCCCcchHH--------------HHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHL  276 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~l  276 (394)
                      |.++....+++.+|.++....           ...+|+..|+..+..+     |+++....+              -..+
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888888988876543           3347777777777644     344433322              2456


Q ss_pred             HHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124          277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  329 (394)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  329 (394)
                      |..|.+.|.+..|+..++.+++..     |+.+....++..++..+.++|...
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence            888999999999999999998876     777888889999999999999765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=7.3e-10  Score=84.41  Aligned_cols=120  Identities=11%  Similarity=0.065  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 016124          155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  234 (394)
Q Consensus       155 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (394)
                      .++.++++..+++++...       |++   ...+..+|.+|...|++++|+..|++++.+        .|....++..+
T Consensus        52 ~~~~~~~i~~l~~~L~~~-------P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~l  113 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-------PQN---SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAAL  113 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            677788999999988853       333   446789999999999999999999999986        46677888999


Q ss_pred             HHHH-HHccc--HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          235 AASY-SRSKN--FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       235 a~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      |.++ ...|+  +++|...+++++.        .+|....++..+|..+...|++++|+.+++++++..
T Consensus       114 A~aL~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        114 ATVLYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9974 67777  5999999999998        357778899999999999999999999999998865

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.26  E-value=4.7e-10  Score=79.16  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      +......+.+|..+...|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            667788899999999999999999999988876        6778899999999999999999999999999987     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                         +|+.+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               344456789999999999999999999999999874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.26  E-value=6.1e-10  Score=83.23  Aligned_cols=116  Identities=15%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ....+..++.+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+..+++++.+    
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----  101 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----  101 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            34457778999999999999999999999999873     233455678999999999999999999999999986    


Q ss_pred             cCCCCcchHhhhHhHHHHHH-------HhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           92 RGTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                          .|.....+..+|.++.       ..|+++.|...+.+++..+++..+.+++.
T Consensus       102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                2333445556666665       89999999999999999988887666543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.25  E-value=6.5e-10  Score=83.08  Aligned_cols=125  Identities=11%  Similarity=0.070  Sum_probs=97.8

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      ......+..+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+..+++++.+.+.. 
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-  105 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-  105 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence            3456788999999999999999999999999873     2344556789999999999999999999999999874321 


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  229 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  229 (394)
                        ......+..++.++|..+...|+++.|...+.+++...++..+.+++....
T Consensus       106 --~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~  156 (168)
T CHL00033        106 --PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE  156 (168)
T ss_pred             --HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence              122333445555566666699999999999999999988887766654433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.25  E-value=1.5e-08  Score=79.79  Aligned_cols=187  Identities=12%  Similarity=0.068  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      +..++..|......|++++|+..|++++...     +.++....+...+|.+++..+++++|+..+++.+..     .|+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence            4456788999999999999999999998863     455777788899999999999999999999999987     457


Q ss_pred             CcchHhhhHhHHHHHHHhC---------------c---HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124           96 SADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  157 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  157 (394)
                      +|....+++.+|.++...+               +   ..+|+..|++.++.++     +++..                
T Consensus       102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-----~S~ya----------------  160 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-----NSQYT----------------  160 (243)
T ss_pred             CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-----CChhH----------------
Confidence            8888899999998865544               1   1344455555554431     22222                


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 016124          158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  237 (394)
Q Consensus       158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  237 (394)
                       .+|...+..+....             +.--..+|..|.+.|+|..|+.-++.+++..     ++.+....++..++..
T Consensus       161 -~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~a  221 (243)
T PRK10866        161 -TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENA  221 (243)
T ss_pred             -HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence             22222222221111             1122467888888888888888888877643     3456677788888888


Q ss_pred             HHHcccHHHHHHHHH
Q 016124          238 YSRSKNFVEAERLLR  252 (394)
Q Consensus       238 ~~~~g~~~~A~~~~~  252 (394)
                      |...|..++|.....
T Consensus       222 y~~lg~~~~a~~~~~  236 (243)
T PRK10866        222 YRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHcCChHHHHHHHH
Confidence            888888888877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.24  E-value=1.2e-08  Score=80.32  Aligned_cols=172  Identities=13%  Similarity=0.037  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      ...+..|..+...|++++|+..|++++...       |.++....+...+|.++...+++++|+..+++.++..     |
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P  100 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P  100 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence            446678888899999999999999998854       4556667778899999999999999999999998863     5


Q ss_pred             CCccHHHHHHHHHHHHHHcc---------------c---HHHHHHHHHHHHHHHHhhcCCCCCcchHH------------
Q 016124          223 EHPSFVTHLLNLAASYSRSK---------------N---FVEAERLLRICLDIMTKTVGPDDQSISFP------------  272 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------  272 (394)
                      ++|....+++.+|.++...+               +   ..+|+..|++.++.+     |+++....+            
T Consensus       101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence            78888999999998764443               1   245666777666643     233222222            


Q ss_pred             --HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124          273 --MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  337 (394)
Q Consensus       273 --~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~  337 (394)
                        -..+|..|.+.|.|..|+.-++.+++-.     |+.+....++..+...|...|..+ +|.....
T Consensus       176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~-~a~~~~~  236 (243)
T PRK10866        176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNA-QADKVAK  236 (243)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChH-HHHHHHH
Confidence              2356888999999999999999998876     777888999999999999999988 7766543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.22  E-value=4.9e-09  Score=76.05  Aligned_cols=123  Identities=22%  Similarity=0.215  Sum_probs=99.1

Q ss_pred             HhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHH
Q 016124          112 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  191 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  191 (394)
                      ..++...+...++..+.-     .++++....+...+|.++...|++++|...|++++..       .+++.....+...
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR   90 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence            567777777767766654     3455666778889999999999999999999999884       2455666667789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                      +|.++...|++++|+..++..         +..+........+|.++...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998652         1344556677889999999999999999999874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.21  E-value=2.1e-07  Score=79.61  Aligned_cols=324  Identities=13%  Similarity=0.062  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH----
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL----   90 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----   90 (394)
                      ....+...|..|...|+.+.|...|+++...-    -+.-.+.+.++...|..-....+++.|.++.++|...-..    
T Consensus       386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~  461 (835)
T KOG2047|consen  386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE  461 (835)
T ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence            34667889999999999999999999998752    1223466888888999888999999999999988754211    


Q ss_pred             hcCCCCcch------HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124           91 NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  164 (394)
Q Consensus        91 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  164 (394)
                      ......|..      ..++...+......|-++.....|.+.+++.-     -.|   ....|.|..+....-++++.+.
T Consensus       462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~  533 (835)
T KOG2047|consen  462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKA  533 (835)
T ss_pred             hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHH
Confidence            011112222      33455566677777888888888888887632     133   3456778888888889999999


Q ss_pred             HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHccc
Q 016124          165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKN  243 (394)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~  243 (394)
                      |++.+.+++     -|....+...|......-+.--+.+.|..+|++|++.+       +|..+. .+...+.+-..-|-
T Consensus       534 YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GL  601 (835)
T KOG2047|consen  534 YERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGL  601 (835)
T ss_pred             HHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhH
Confidence            999998863     34455555565555555444557899999999999854       233333 34445666666677


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       244 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      -..|+..|+++-..       -++...   ..+-++|...    =-...-...|++|++..     |+ ..........+
T Consensus       602 ar~amsiyerat~~-------v~~a~~---l~myni~I~kaae~yGv~~TR~iYekaIe~L-----p~-~~~r~mclrFA  665 (835)
T KOG2047|consen  602 ARHAMSIYERATSA-------VKEAQR---LDMYNIYIKKAAEIYGVPRTREIYEKAIESL-----PD-SKAREMCLRFA  665 (835)
T ss_pred             HHHHHHHHHHHHhc-------CCHHHH---HHHHHHHHHHHHHHhCCcccHHHHHHHHHhC-----Ch-HHHHHHHHHHH
Confidence            77788887776441       222111   1222222221    11234466788888765     22 23344556788


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      .+-.+.|..+ .|...|.-+-++..-   ..+++...++   -..-.+.|+    .+.++.++.+++...
T Consensus       666 dlEtklGEid-RARaIya~~sq~~dP---r~~~~fW~tw---k~FEvrHGn----edT~keMLRikRsvq  724 (835)
T KOG2047|consen  666 DLETKLGEID-RARAIYAHGSQICDP---RVTTEFWDTW---KEFEVRHGN----EDTYKEMLRIKRSVQ  724 (835)
T ss_pred             HHhhhhhhHH-HHHHHHHhhhhcCCC---cCChHHHHHH---HHHHHhcCC----HHHHHHHHHHHHHHH
Confidence            8899999998 888888776655321   1233444443   445566777    455666666665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.21  E-value=1.8e-09  Score=93.00  Aligned_cols=225  Identities=16%  Similarity=0.118  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      ....-..++..+...|-..+|+..|++.-                .+.....||...|+..+|.....+-++        
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le--------  452 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE--------  452 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc--------
Confidence            34445678888999998888888886642                344567888888988888877666543        


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                       .+..+..|..+       |++-.=..+|+++.++.+.       ..+.+...+|......++|+++.+.++.++++.  
T Consensus       453 -k~~d~~lyc~L-------GDv~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--  515 (777)
T KOG1128|consen  453 -KDPDPRLYCLL-------GDVLHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEIN--  515 (777)
T ss_pred             -CCCcchhHHHh-------hhhccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC--
Confidence             22333444444       4444445666777766433       223455667777777899999999999998863  


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                              +....+++.+|.+....+++..|...|..++..        .|+...+++|++..|...|+-.+|...++++
T Consensus       516 --------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  516 --------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             --------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence                    233567789999999999999999999988874        5778889999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      ++.        +......+-|.-.+....|.+++|++.+.+.+.+.+...
T Consensus       580 lKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  580 LKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            883        133445566777788899999999999999988876543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.4e-08  Score=78.48  Aligned_cols=188  Identities=13%  Similarity=0.066  Sum_probs=142.2

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  148 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  148 (394)
                      ....+|.+|++++..-.+        ..|.....+..||.||+...+|..|..+|++.-..        .|........-
T Consensus        21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~   84 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ   84 (459)
T ss_pred             HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence            456678888877665433        35556677889999999999999999999987654        56666666777


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                      +..++..+.+..|+.......+          .+.....+...-+.+.+..+++..+..+.++.          .....+
T Consensus        85 AQSLY~A~i~ADALrV~~~~~D----------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~A  144 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLLD----------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEA  144 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCcc
Confidence            8888999999999887765432          34444555566677788888888887766542          112456


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ....+.|.+..+.|+++.|.+-|+.+++.     ++..|.   .-++++.++.+.|+++.|+++..+.++.-
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            67788999999999999999999999883     233343   34689999999999999999998887754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.20  E-value=1.2e-09  Score=78.62  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      |........+|..+...|++++|...+++++..        .|....++..+|.++...|++++|..++++++..     
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----   80 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----   80 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            455677889999999999999999999998876        4556788999999999999999999999999876     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         .|.....+..+|.++...|++++|+..++++++..
T Consensus        81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence               34456678899999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.20  E-value=1e-09  Score=78.98  Aligned_cols=108  Identities=13%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             cccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124            6 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   85 (394)
Q Consensus         6 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   85 (394)
                      +..-..+|........+|..+...|++++|...+++++...        |....++..+|.++...|++++|...+++++
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444567777888999999999999999999999988752        3445778899999999999999999999988


Q ss_pred             HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..        .|.....+..+|.++...|++++|+..++++++.
T Consensus        79 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        79 AL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            76        4566788899999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=3e-09  Score=91.71  Aligned_cols=225  Identities=18%  Similarity=0.183  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .......++..+...|-..+|+..+++.                ..+.....||...|+..+|.....+-++        
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le--------  452 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE--------  452 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc--------
Confidence            4445667889999999999998888763                2345567889999999998888776554        


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                       .+.....|..+|++...       -.+|+++.++.+..         .+.+...+|......++|+++..+++.++++ 
T Consensus       453 -k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~---------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-  514 (777)
T KOG1128|consen  453 -KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI---------SARAQRSLALLILSNKDFSEADKHLERSLEI-  514 (777)
T ss_pred             -CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh---------hHHHHHhhccccccchhHHHHHHHHHHHhhc-
Confidence             12233445555555444       45555555554321         1234456677777789999999999999986 


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                             +|....+++.+|.+..+.++++.|.+.|..++.+        .|+...++.+++..|...|+-.+|...+++|
T Consensus       515 -------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  515 -------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             -------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence                   5677789999999999999999999999999873        5788899999999999999999999999999


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Q 016124          297 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  347 (394)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~  347 (394)
                      ++..     ..++.   .+-+.-.+....|.++ +|+..+.+.+.+.....
T Consensus       580 lKcn-----~~~w~---iWENymlvsvdvge~e-da~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  580 LKCN-----YQHWQ---IWENYMLVSVDVGEFE-DAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hhcC-----CCCCe---eeechhhhhhhcccHH-HHHHHHHHHHHhhhhcc
Confidence            9854     23333   4556666778899999 99999999998876644

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.2e-07  Score=71.67  Aligned_cols=193  Identities=19%  Similarity=0.106  Sum_probs=145.8

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124           29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  108 (394)
Q Consensus        29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
                      ..+.++-+..+...+......  .-.++....+-.+..+....|+.+-|..++++....+        |....+...-|.
T Consensus        25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam   94 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAM   94 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHH
Confidence            456777888888777765543  1223455566677777888899999999988765542        333455556688


Q ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      .+...|++++|+++|+..++        ++|....++-.--.+...+|+.-+|++.+..-++.+..      |    ..+
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~EA  156 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QEA  156 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HHH
Confidence            89999999999999998775        34555555555556677889999999999998887632      2    346


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHH
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI  257 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~  257 (394)
                      |..++.+|...|+|++|.-++++.+-+        .|.....+..+|.++.-+|   +..-|.++|.+++++
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            688999999999999999999998764        5666677778888887766   567899999999985

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.6e-07  Score=69.38  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=164.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           51 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        51 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      .++....+..+..-+..|....+|++|...+.+|.+..+...  .....+.++-..+.+......+.++..+++++..++
T Consensus        24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344455666777778889999999999999999998776532  334556778888888999999999999999999998


Q ss_pred             HHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124          131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  210 (394)
Q Consensus       131 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (394)
                      ....   +|+.+..-...+--.....++++|+.+|++++.+.+..    .........+...++++.+..++++|-..+.
T Consensus       102 ~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l  174 (308)
T KOG1585|consen  102 VECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFL  174 (308)
T ss_pred             HHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence            8753   44444443444445567789999999999999998753    3334445566788999999999999998888


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          211 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                      +-..+.....  ..+.....+.....+|.-..++..|...++...++    .+-..++...++.+|-..| ..|+.++..
T Consensus       175 Ke~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~  247 (308)
T KOG1585|consen  175 KEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIK  247 (308)
T ss_pred             HhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence            7766655543  33444455556667777788999999999876553    1122345556666665544 567777665


Q ss_pred             HHH
Q 016124          291 KLV  293 (394)
Q Consensus       291 ~~~  293 (394)
                      ..+
T Consensus       248 kvl  250 (308)
T KOG1585|consen  248 KVL  250 (308)
T ss_pred             HHH
Confidence            544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.17  E-value=7.5e-09  Score=75.12  Aligned_cols=131  Identities=17%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      +.-.......++...+...++..+.-     .++++....+...+|.++...|++++|...|+.++..     .+++...
T Consensus        15 y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~   84 (145)
T PF09976_consen   15 YEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELK   84 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHH
Confidence            33344444688888887777776654     3455666778889999999999999999999999875     2234445


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      ..+...++.++...|++++|+..++..         ++.+....+...+|.++...|++++|...|++++
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            667888999999999999999998652         1344556678889999999999999999999874

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.6e-07  Score=70.51  Aligned_cols=226  Identities=15%  Similarity=-0.003  Sum_probs=161.4

Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ++....+..+..-+..|....+|++|...+.++.+-.+..    ......+..+...+........+.++..+++++..+
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn----rslfhAAKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN----RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4444455667777888899999999999999999877653    455666778888888999999999999999999999


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      +.+.+   .|+.+..-...+--....-++++|+++|++++.+.+..  .........+...+.++.+..++.+|-..+.+
T Consensus       101 Y~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  101 YVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            88875   34444433334444566789999999999999987653  22223345567788999999999999988888


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                      -..+....  ...+.....+.....++....++. .|..+++..-++    .+-..++...++.+|-..|. .|+.++..
T Consensus       176 e~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv-~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~  247 (308)
T KOG1585|consen  176 EGVAADKC--DAYNSQCKAYVAAILVYLYAHDYV-QAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIK  247 (308)
T ss_pred             hhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHH-HHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence            76666554  233444445555556666677887 888887776554    22334566677777766654 57777665


Q ss_pred             hhH
Q 016124          376 PLK  378 (394)
Q Consensus       376 ~~~  378 (394)
                      ...
T Consensus       248 kvl  250 (308)
T KOG1585|consen  248 KVL  250 (308)
T ss_pred             HHH
Confidence            543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.17  E-value=5.2e-09  Score=84.48  Aligned_cols=263  Identities=15%  Similarity=0.101  Sum_probs=158.0

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhh
Q 016124           24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  103 (394)
Q Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  103 (394)
                      +-++-.|+|..++.-++  +.      ..+.+........+.+++..+|+++..+.-..          ...+|. ..+.
T Consensus         9 rn~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av   69 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAV   69 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHH
T ss_pred             HHHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHH
Confidence            34556899988886555  11      22334556667778899999998776553321          112232 3344


Q ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124          104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      ..++..+...++-+.++..++..+       ..... .........|.++...|++++|++.+.+.            .+
T Consensus        70 ~~la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~  130 (290)
T PF04733_consen   70 RLLAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS  130 (290)
T ss_dssp             HHHHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC
T ss_pred             HHHHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc
Confidence            555655544344444444333221       11111 22234556678888899999998887653            11


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHh
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTK  260 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~  260 (394)
                         ..+......++...++++.|.+.++...++        ..+...+....+++....|  ++.+|.-.|++..+    
T Consensus       131 ---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----  195 (290)
T PF04733_consen  131 ---LELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----  195 (290)
T ss_dssp             ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----
T ss_pred             ---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----
Confidence               122344667899999999999888775432        2233333333344444455  58899998888543    


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                          ..+.....+..++.++..+|++++|.+.+++++..        .|....++.+++.+....|+..+.+.+++.+..
T Consensus       196 ----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  196 ----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             ----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             ----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence                23456678889999999999999999999998652        244566889999999999998524555555543


Q ss_pred             HHHHhhcCCCCHHHHH
Q 016124          341 RIQEREFGSESEEVML  356 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~  356 (394)
                      ..     .+.||.+..
T Consensus       264 ~~-----~p~h~~~~~  274 (290)
T PF04733_consen  264 QS-----NPNHPLVKD  274 (290)
T ss_dssp             HH-----TTTSHHHHH
T ss_pred             Hh-----CCCChHHHH
Confidence            32     456765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=6.3e-10  Score=85.96  Aligned_cols=102  Identities=17%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ....++.+-.-|.-....++|.+|+..|.+||.+        +|..+..|.+.+.+|.++|.++.|++-++.++.+    
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----  144 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence            4456777888899999999999999999999997        3555677899999999999999999999999998    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                          +|....+|..||.+|..+|++.+|+..|++++++
T Consensus       145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence                7888999999999999999999999999999997

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.16  E-value=3.8e-09  Score=79.18  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=87.6

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..+..+..++.+|..+...|++++|+.+|++++....     +.+....++..+|.++...|++++|+..+++++..   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            4556677889999999999999999999999998642     23344678999999999999999999999999986   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCc-------HHHHHHHHHHHHHHHHHhhC
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  135 (394)
                           .|.....+..+|.++...|+       ++.|+..+.++++..++...
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence                 34456677778888877665       56666666666666555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=1.4e-07  Score=71.31  Aligned_cols=192  Identities=15%  Similarity=0.028  Sum_probs=137.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124          115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  194 (394)
Q Consensus       115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~  194 (394)
                      +.++-.++....+......  .-.++....+-.+..+....|+.+-|..++++..+.+       |.++.+.   ..-|.
T Consensus        27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~---~lkam   94 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVG---KLKAM   94 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHH---HHHHH
Confidence            4455555555555444332  1223444456666777788899999999998876654       2333322   44678


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124          195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  274 (394)
Q Consensus       195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (394)
                      .+...|++++|+++|+..++        ++|....++-.--.+...+|+.-+|++.+..-++.+        +....+|.
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~  158 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH  158 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence            88899999999999998775        456665666666667788899999999888887753        44567899


Q ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHH
Q 016124          275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLKRVLRIQ  343 (394)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~~A~~~~~~al~~~  343 (394)
                      .++.+|...|++++|.-++++.+-+.        |.....+..+|.++...|.   .+ -|.++|.+++++.
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~~--------P~n~l~f~rlae~~Yt~gg~eN~~-~arkyy~~alkl~  221 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLIQ--------PFNPLYFQRLAEVLYTQGGAENLE-LARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhC
Confidence            99999999999999999999987643        4444456677777777664   44 6888999998864

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=3.8e-09  Score=81.78  Aligned_cols=102  Identities=28%  Similarity=0.243  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      ...++.+-.-|.-....++|.+|+..|.+|+.+        .|..+..|.+.+.+|.++|.++.|++-++.++.+     
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----  144 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence            345666777889999999999999999999997        6777888999999999999999999999999987     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         +|....+|..||.+|..+|++++|++.|++++++.
T Consensus       145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence               78889999999999999999999999999999963

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=4.4e-09  Score=73.93  Aligned_cols=103  Identities=13%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ..++.+|..+...|++++|+..|.+++..     .++++....+++.+|.++...|++++|+.++++++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46789999999999999999999999875     23444556778899999999999999999999998762     344


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      +....++..+|.++...|++++|..++.++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            555678999999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=7.2e-09  Score=72.83  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  266 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  266 (394)
                      .+++.+|..+...|++++|+..+.+++...     ++++....++..+|.++...|++++|+.+++.++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            346789999999999999999999998642     3344556788899999999999999999999998742     455


Q ss_pred             CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          267 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      +....++..+|.++...|++++|..++.+++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            5567788999999999999999999999998864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=6.9e-07  Score=78.80  Aligned_cols=259  Identities=14%  Similarity=0.091  Sum_probs=159.5

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      +.+....|..++|..+|++.-..                -.|-.+|...|.+++|.+..+.          .+......+
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~T  860 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNT  860 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhhh
Confidence            45556677777777777765432                2344567777777777665432          244556678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHhcccCCCchHHH---------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALR----VIKDSNYMSLDDSIM---------ENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                      +++.|.-+...++.+.|+++|+++-.    +.+-.   ..+++.+         ...|...|..+...|+.+.|+.+|..
T Consensus       861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL---~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML---KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH---HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            89999999999999999999998522    11100   0111110         13445678888888999999988887


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124          212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      |-+                ++.+..+.+-+|+.++|..+.++.-             ...+.+.||..|...|++.+|+.
T Consensus       938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  938 AKD----------------YFSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             hhh----------------hhhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHHHHH
Confidence            643                3455667777888888877655432             22456789999999999999999


Q ss_pred             HHHHHHHHHHHH--cCCCC-hhHH---------HHHHHHHHHHHHhC-CCchHHHHHHHHH------HH-----------
Q 016124          292 LVLEALYIREIA--FGKDS-LPVG---------EALDCLVSIQTRLG-EDDTKLLELLKRV------LR-----------  341 (394)
Q Consensus       292 ~~~~a~~~~~~~--~~~~~-~~~~---------~~~~~l~~~~~~~g-~~~~~A~~~~~~a------l~-----------  341 (394)
                      .|.+|-.....+  ...+. .+..         .-+...+..|...| +.. .|..+|.+|      ++           
T Consensus       989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen  989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH-KAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-HHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence            998864432211  11111 1100         01223345555665 444 666666543      22           


Q ss_pred             -HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          342 -IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       342 -~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                       +..+-+.+.  ..+..+..-+..+....+|++|..++-.+.+.
T Consensus      1068 ~lIa~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1068 DLIAKDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred             HHHHHhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             222212211  12345677788999999999998875554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.09  E-value=1.9e-08  Score=75.38  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=90.3

Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      ..+.....+.++|..+...|++++|+.++++++....     +.+....++.++|.++...|++++|+..+++++..   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            3455566789999999999999999999999988632     23345678999999999999999999999999984   


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcC-------hHHHHHHHHHHHHHHHHHcCCCCh
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSL  309 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~  309 (394)
                           .|.....+..+|.++...|+       ++.|+..++++++........++.
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence                 35556777788888877655       666777777777776665544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.07  E-value=6.2e-09  Score=84.03  Aligned_cols=240  Identities=15%  Similarity=0.105  Sum_probs=145.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +++........+.+.+..+|+++..+.-...          ..+|. ..+...++..+...++-+.++.-++..+     
T Consensus        30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~la~y~~~~~~~e~~l~~l~~~~-----   93 (290)
T PF04733_consen   30 SPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRLLAEYLSSPSDKESALEELKELL-----   93 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHHHHHHHCTSTTHHCHHHHHHHCC-----
T ss_pred             CchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHHHHHHHhCccchHHHHHHHHHHH-----
Confidence            3444556667788889999988765543311          11221 2334455555544334344433322211     


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                       ...............|.++...|++++|+..+.+.          ++   .........++...++++.|.+.++.+.+
T Consensus        94 -~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   94 -ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             -CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             -HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             11112123344556678888899999999887653          12   23444567789999999999998877654


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                      +       .+|... ..  ...+.+....|  ++.+|...|++..+        ..+.....++.++.+++.+|++++|.
T Consensus       160 ~-------~eD~~l-~q--La~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe  221 (290)
T PF04733_consen  160 I-------DEDSIL-TQ--LAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAE  221 (290)
T ss_dssp             C-------SCCHHH-HH--HHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred             c-------CCcHHH-HH--HHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            2       333322 22  22333444444  68999999988533        23445677889999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHcCCCChhH
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK-EAEKLVLEALYIREIAFGKDSLPV  311 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~  311 (394)
                      ..+++++.        ..|....++.+++.+....|+.. .+.+++.+....     .|+||.+
T Consensus       222 ~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~  272 (290)
T PF04733_consen  222 ELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLV  272 (290)
T ss_dssp             HHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHH
T ss_pred             HHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHH
Confidence            99998865        34667788999999999999984 455566654433     3677654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=1.7e-06  Score=71.76  Aligned_cols=255  Identities=15%  Similarity=0.056  Sum_probs=180.0

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCc--hH----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC--Ccch
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--SADL   99 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~   99 (394)
                      ..|-+++|.++-++++...++....+  .|    .....+-.+..+-.-.|++.+|++-...+.+.+.+..++.  ....
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            56888999999999998876654333  11    1233445567777788999999999999988877654311  1233


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-cC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YM  178 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~  178 (394)
                      +.....+|......+.++.|+..|..|.+.....     .-.+.+-.++|.+|...|+-+.--+    +++.....+ ..
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~i~p~nt~s  437 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYK----ALDLIGPLNTNS  437 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHH----HHHhcCCCCCCc
Confidence            5567778888889999999999999999875432     2355567789999999887655433    333321110 00


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                      .........+++..|...+.++++.+|...+.+.+++.....  ...-.+..+..|+.+....|+..++.+...-++++.
T Consensus       438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            111233456667778888899999999999999998863221  233455667788999999999999999999999988


Q ss_pred             HhhcCCCCCcchHHHHHHHHHHHhhcC--hHHHHHHHHH
Q 016124          259 TKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLE  295 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~  295 (394)
                      ++.  ++.+...+....+-.++...|+  .....+.+..
T Consensus       516 kKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  516 KKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             hcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            877  5666666666677778888887  4444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=5.9e-06  Score=68.55  Aligned_cols=320  Identities=12%  Similarity=0.053  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +..-|..-..++++..|.+.|++|+..       + ......+...+.+-+.......|..++.+|+.+.        |.
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--------PR  139 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--------PR  139 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------ch
Confidence            344445555666677777777777654       2 2344567777888888888999999999998874        44


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      +-..++....+-..+|+...|.+.|++-++.-        |+. .++......-.+.+..+.|...|++-+-..      
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~--------P~e-qaW~sfI~fElRykeieraR~IYerfV~~H------  204 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWE--------PDE-QAWLSFIKFELRYKEIERARSIYERFVLVH------  204 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC--------CcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheec------
Confidence            45566666666677888888888888776541        111 122222233333344444444444433211      


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                          |. ...+...+..-...|+..-|...|+.|++....     +......+...|..-..+..++.|.-+|+-+++..
T Consensus       205 ----P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~  274 (677)
T KOG1915|consen  205 ----PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI  274 (677)
T ss_pred             ----cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                11 122333444444444444444444444443211     11111222223333333333333333333222210


Q ss_pred             ---------------HhhcC---------------------CCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          259 ---------------TKTVG---------------------PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       259 ---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                                     ++.+|                     ..+|..-.++...-.+-...|+.+.-.+.|++|+.-.  
T Consensus       275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--  352 (677)
T KOG1915|consen  275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--  352 (677)
T ss_pred             CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--
Confidence                           00000                     2346666777777778888899999999999998632  


Q ss_pred             HcCCCChhH----HHHHHHHHHHH---HHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          303 AFGKDSLPV----GEALDCLVSIQ---TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       303 ~~~~~~~~~----~~~~~~l~~~~---~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                         |.....    --++..+-.++   ....+.+ .+.+.|+.++++    ....+-..+.++...|....++.+...|.
T Consensus       353 ---pp~~ekr~W~RYIYLWinYalyeEle~ed~e-rtr~vyq~~l~l----IPHkkFtFaKiWlmyA~feIRq~~l~~AR  424 (677)
T KOG1915|consen  353 ---PPASEKRYWRRYIYLWINYALYEELEAEDVE-RTRQVYQACLDL----IPHKKFTFAKIWLMYAQFEIRQLNLTGAR  424 (677)
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhh----cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence               111000    11122222221   2345666 788888888875    34455667777888888888888888888


Q ss_pred             hhHHHHHHHHHHHH
Q 016124          376 PLKKRLSNLRMKYK  389 (394)
Q Consensus       376 ~~~~~a~~~~~~~~  389 (394)
                      ..+-.|+-.+++.+
T Consensus       425 kiLG~AIG~cPK~K  438 (677)
T KOG1915|consen  425 KILGNAIGKCPKDK  438 (677)
T ss_pred             HHHHHHhccCCchh
Confidence            88887777666543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=7.6e-06  Score=67.91  Aligned_cols=221  Identities=16%  Similarity=0.108  Sum_probs=151.1

Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch--HHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD--SIMENMRIDLAE-LLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~  214 (394)
                      +|..-.++...-.+-...|+.+.-.+.|++|+.-....   ....  ....-.+.+.+. .-....+.+.+.+.|+.+++
T Consensus       318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~---~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA---SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44445567777777778899999999999998743210   0001  111112222221 12346788999999999988


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      +.    +..+...+..+...|....++.+...|.+.+-.++..+        |. .........+-...++++....+|+
T Consensus       395 lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  395 LI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             hc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            64    23445667778888888889999999999888887643        11 1233445566677888888888888


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhh
Q 016124          295 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  374 (394)
Q Consensus       295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  374 (394)
                      +-++.        .|....++...|.+-..+|+.+ .|...|+-|+.--    ..+-|..  .+......-...|.++.|
T Consensus       462 kfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp----~ldmpel--lwkaYIdFEi~~~E~eka  526 (677)
T KOG1915|consen  462 KFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP----ALDMPEL--LWKAYIDFEIEEGEFEKA  526 (677)
T ss_pred             HHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc----ccccHHH--HHHHhhhhhhhcchHHHH
Confidence            88763        3777788899999999999999 8999888887521    1122322  344555666778999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 016124          375 FPLKKRLSNLRMKYK  389 (394)
Q Consensus       375 ~~~~~~a~~~~~~~~  389 (394)
                      ..+|++.++..+-.+
T Consensus       527 R~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  527 RALYERLLDRTQHVK  541 (677)
T ss_pred             HHHHHHHHHhcccch
Confidence            999999887655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.00  E-value=2.4e-08  Score=68.38  Aligned_cols=102  Identities=28%  Similarity=0.317  Sum_probs=83.7

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .+.+.+|.++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...       |
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-------p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-------P   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence            46788999999999999999999999985     44566677899999999999999999999999998743       3


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      +++....+...++.++...|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3222333445688899999999999999877664

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.99  E-value=1.1e-05  Score=72.29  Aligned_cols=340  Identities=13%  Similarity=0.036  Sum_probs=199.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ++.....+..-+..+...|..++|+.+.-.|-         +....+..+-..+.-....++..--..+.+..       
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~---------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-------  406 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAG---------DPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-------  406 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCChHHHHHHHHhCC---------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-------
Confidence            34455666677777788888888887654431         22233344444455555555443322222110       


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      ..+--...+......++......++.+|..+..++........ +......+......|.+....|++++|+++.+.++.
T Consensus       407 P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         407 PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0000011223334457888889999999999988776543310 001112334445567788889999999999999998


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  250 (394)
                      .....     ....-..++..+|.+..-.|++++|..+..++.++.....  .......+....+.+...+|+...|.  
T Consensus       487 ~L~~~-----~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--  557 (894)
T COG2909         487 QLPEA-----AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--  557 (894)
T ss_pred             hcccc-----cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence            76432     2333355678899999999999999999999999877653  22233445566788889999433332  


Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124          251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  330 (394)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  330 (394)
                      -..+............+.........+.++...-+++.+..-....++...... +......-.+..|+.+....|+.+ 
T Consensus       558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~-  635 (894)
T COG2909         558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLD-  635 (894)
T ss_pred             HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHH-
Confidence            222322222222222232222223333333333346777666666666554321 121222223358999999999999 


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          331 KLLELLKRVLRIQEREFGSESEEVM-LTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       331 ~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                      +|.............-.  .+++.. .+..........+|+.++|.....+
T Consensus       636 ~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         636 KALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            99999988887765421  233332 2233333345567888888777666

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.97  E-value=7.3e-09  Score=67.21  Aligned_cols=84  Identities=17%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  107 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  107 (394)
                      .+|++++|+.+++++++..+.     .+ ....+..+|.+++..|++++|+..+++ ...        .+........+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            368999999999999987421     22 445677799999999999999999998 333        233456667789


Q ss_pred             HHHHHhCcHHHHHHHHHHH
Q 016124          108 SLFIKEGKAVDAESVFSRI  126 (394)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~a  126 (394)
                      .++..+|++++|+..++++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.97  E-value=3.1e-08  Score=67.83  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+.+.+|.++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...     +++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            45788999999999999999999999884     44556777899999999999999999999999987642     233


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  128 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  128 (394)
                      +........++.++...|+.++|+..+..++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33555666788999999999999999887764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.97  E-value=1.2e-08  Score=85.57  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +...|..++..|+|++|+..|++++.+.        |....++..+|.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            5567899999999999999999999862        344567899999999999999999999999987        456


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ...+++.+|.++..+|++++|+..|++++.+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7788999999999999999999999999987

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=1e-07  Score=78.96  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      ....+..+..++..|++++|+..++..+.        ..|+....+...+.++...++..+|.+.+++++..        
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------  369 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------  369 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence            34557778888899999999999888655        45677777788899999999999999999999883        


Q ss_pred             CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                      .|.......++|..+...|++.+|+..+...+.        +.|+....|..|+..|..+|+.. +|...+.+
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A~AE  433 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLARAE  433 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHHHHH
Confidence            455566778999999999999999988888765        33555667889999999999876 55544433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.94  E-value=3.4e-05  Score=70.25  Aligned_cols=320  Identities=13%  Similarity=0.036  Sum_probs=208.0

Q ss_pred             CchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           52 KTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        52 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      ..+...+.+...+|.++. ...+++.|+.++++++.+.++ . .-......+...++.++...+... |...+++.++..
T Consensus        53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~  129 (608)
T PF10345_consen   53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS  129 (608)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            334466778889999887 788999999999999988755 1 111123445566788888888777 999999999987


Q ss_pred             HHhhCCCchHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016124          131 TKVYGENDGRVGMAMCSL-AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  209 (394)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  209 (394)
                      +..   .+.........+ .......+++..|.+.++.........    .++.....+....+.+....+..+++++..
T Consensus       130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l  202 (608)
T PF10345_consen  130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVFVLASLSEALLHLRRGSPDDVLELL  202 (608)
T ss_pred             hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            652   122222233333 333334489999999999999887542    455555555566677888889899999999


Q ss_pred             HHHHHHHHHh--hCCCCccHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHhhcCCC-------C------------
Q 016124          210 EECLLITEKY--KGKEHPSFVTHLLNLAA--SYSRSKNFVEAERLLRICLDIMTKTVGPD-------D------------  266 (394)
Q Consensus       210 ~~a~~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~------------  266 (394)
                      +++.......  .+..++....++..+-.  ++...|++..+.+.+++.-..........       +            
T Consensus       203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~  282 (608)
T PF10345_consen  203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS  282 (608)
T ss_pred             HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence            9997776654  11123333444444433  45566777777776665544443332110       0            


Q ss_pred             -----Ccc----------hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC---CCChh---------------HHH
Q 016124          267 -----QSI----------SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLP---------------VGE  313 (394)
Q Consensus       267 -----~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~---------------~~~  313 (394)
                           +..          +-++..-|......|..++|.+++.++++..++...   ...+.               ...
T Consensus       283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~  362 (608)
T PF10345_consen  283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY  362 (608)
T ss_pred             cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence                 000          112223355566677778999999999999888761   11110               012


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      .+..++.+..-.+++. .|......+.....+...+ ........++..|..+...|+.+.|...|.+..
T Consensus       363 ~~~y~~~~~~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~  431 (608)
T PF10345_consen  363 LLFYQIWCNFIRGDWS-KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR  431 (608)
T ss_pred             HHHHHHHHHHHCcCHH-HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence            2344566677788888 8888888887766543221 122345667788989999999999999998443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=1e-08  Score=66.48  Aligned_cols=83  Identities=23%  Similarity=0.323  Sum_probs=64.7

Q ss_pred             hhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124           71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  150 (394)
Q Consensus        71 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  150 (394)
                      .|++++|+.+++++++....     ++ ....+..+|.+++..|++++|+..+++ ...        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            68999999999999987321     22 455677799999999999999999998 433        2333455667799


Q ss_pred             HHHHCCCHHHHHHHHHHH
Q 016124          151 AKCANGNAEEAVELYKKA  168 (394)
Q Consensus       151 ~~~~~g~~~~A~~~~~~a  168 (394)
                      ++..+|++++|+..++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.93  E-value=4.4e-08  Score=82.21  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=93.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  269 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  269 (394)
                      ...|...+..|++++|+..|++++..        .|....++.++|.++...|++++|+..+++++.+        .|..
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~   69 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL   69 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence            45688889999999999999999985        4566778999999999999999999999999984        4667


Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      ..++..+|.++...|++++|+..|++++.+.     ++++.   ....++.+....
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~~---~~~~l~~~~~kl  117 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASLA-----PGDSR---FTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHH
Confidence            7889999999999999999999999999865     44443   344455554433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=2.2e-05  Score=65.63  Aligned_cols=151  Identities=20%  Similarity=0.117  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ....+.+..+..++..|++++|+..+...+..       .|+++...   ...+.++...++..+|.+.+++++..    
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~---~~~~~i~~~~nk~~~A~e~~~kal~l----  369 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYL---ELAGDILLEANKAKEAIERLKKALAL----  369 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            44557788899999999999999999996663       35555544   55899999999999999999999885    


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                          .|.......++|..+.+.|++.+|+..++..+.        ..|+....|..||..|..+|+..+|....      
T Consensus       370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~------  431 (484)
T COG4783         370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLAR------  431 (484)
T ss_pred             ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHH------
Confidence                455566788999999999999999999988776        56778889999999999999987765433      


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                                         +..+...|+++ +|+..+..+.+.
T Consensus       432 -------------------AE~~~~~G~~~-~A~~~l~~A~~~  454 (484)
T COG4783         432 -------------------AEGYALAGRLE-QAIIFLMRASQQ  454 (484)
T ss_pred             -------------------HHHHHhCCCHH-HHHHHHHHHHHh
Confidence                               34455667787 888887777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.1e-07  Score=77.15  Aligned_cols=142  Identities=19%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH-------HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      .+.....-|+.++..|+|..|...|++++..+......+..       ....++.+++.++.++++|.+|+....++|.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            34556778999999999999999999999987643222211       34567899999999999999999999999987


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHH-HHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYK  166 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~  166 (394)
                              .+....+++..|.++...|+|+.|+..|++++++        .|..-.+...+..+.....++.+ ..+.|.
T Consensus       287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    5677899999999999999999999999999987        23333445555555554444433 356666


Q ss_pred             HHHHHH
Q 016124          167 KALRVI  172 (394)
Q Consensus       167 ~a~~~~  172 (394)
                      .++...
T Consensus       351 ~mF~k~  356 (397)
T KOG0543|consen  351 NMFAKL  356 (397)
T ss_pred             HHhhcc
Confidence            666543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.89  E-value=5.4e-05  Score=68.94  Aligned_cols=356  Identities=12%  Similarity=0.021  Sum_probs=222.9

Q ss_pred             cCCCchHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      ....+...+.+...+|.+++ ...+++.|..++++++.+.++  ..-......+...++.++...+... |....++.++
T Consensus        51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~  127 (608)
T PF10345_consen   51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE  127 (608)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence            33344456778899999887 788999999999999998765  2222334566677789998888777 9999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhH-HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSL-GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  165 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  165 (394)
                      ..+...   +.........+ .......+++..|...++.........  .+......+....+.+....+..+++++..
T Consensus       128 ~~~~~~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l  202 (608)
T PF10345_consen  128 DSETYG---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELL  202 (608)
T ss_pred             HHhccC---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            876521   22222233223 333333479999999999998876542  122233344455567777888899999999


Q ss_pred             HHHHHHHHhccc-CCCchHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------C-----------
Q 016124          166 KKALRVIKDSNY-MSLDDSIMENMRIDLA--ELLHIVGRGQEGRELLEECLLITEKYKGKE-------H-----------  224 (394)
Q Consensus       166 ~~a~~~~~~~~~-~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~-----------  224 (394)
                      +++......... .....+. ..++..+-  .++...|+++.+...+++.-..........       +           
T Consensus       203 ~~~~~~~~~~q~~~~~~~~q-L~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~  281 (608)
T PF10345_consen  203 QRAIAQARSLQLDPSVHIPQ-LKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS  281 (608)
T ss_pred             HHHHHHHhhcccCCCCCcHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence            998776654200 1112222 22333332  355667887787777666555444332110       0           


Q ss_pred             ------cc----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC---CCCCcc---------------h
Q 016124          225 ------PS----------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQSI---------------S  270 (394)
Q Consensus       225 ------~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~---------------~  270 (394)
                            +.          .+-++..-|......+..++|.+++++++...++...   ...+..               .
T Consensus       282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~  361 (608)
T PF10345_consen  282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC  361 (608)
T ss_pred             ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence                  10          1223333355666777778999999999998887761   111111               1


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC-
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-  348 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~-  348 (394)
                      .+...++.+..-.|++..|......+.....+...+ ........++..|..+...|+.+ .|...|.+..-....... 
T Consensus       362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~-~A~~~y~~~~~~~~~~~~~  440 (608)
T PF10345_consen  362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE-AALYQYQKPRFLLCEAANR  440 (608)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH-HHHHHHhhhHHhhhhhhcc
Confidence            123445666777899999999999888776543221 11223556777888888999999 999999854422222222 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHhcCchh
Q 016124          349 --SESEEVMLTLKKVVSYLDKLGRKEE  373 (394)
Q Consensus       349 --~~~~~~~~~~~~la~~~~~~g~~~~  373 (394)
                        ...+-..-+..++..++...+....
T Consensus       441 ~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  441 KSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             CCcchHHHHHHHHHHHHHhHhhcccch
Confidence              2233344555667777776665444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.88  E-value=2.2e-08  Score=62.29  Aligned_cols=64  Identities=27%  Similarity=0.451  Sum_probs=58.9

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV  171 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~  171 (394)
                      +..+..+|.++...|++++|+.+|.+++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567889999999999999999999999997        4666779999999999999 799999999999986

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.87  E-value=3.2e-08  Score=61.53  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC-cHHHHHHHHHHHHHH
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI  129 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~  129 (394)
                      +..+..+|.++...|++++|+..|++++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456889999999999999999999999998        5677889999999999999 799999999999986

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.86  E-value=1.2e-07  Score=75.17  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=88.7

Q ss_pred             HHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124          229 THLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  307 (394)
Q Consensus       229 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  307 (394)
                      ...+..+..+ ...|++++|+..|+..+..+     |+++....+++.+|.+|...|++++|+..|++++..+     |+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3444555544 56799999999999998854     4556667899999999999999999999999998876     78


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124          308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                      ++....++..+|.++...|+.+ +|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~-~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTA-KAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence            8889999999999999999999 9999999998754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.83  E-value=2.7e-07  Score=73.24  Aligned_cols=103  Identities=9%  Similarity=0.026  Sum_probs=87.3

Q ss_pred             HHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124          188 MRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  266 (394)
Q Consensus       188 ~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  266 (394)
                      ..+..|..+ ...|++++|+..|+..+...     |+.+....+++.+|.+|...|++++|+..|++++..+     +++
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s  213 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS  213 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence            335556654 56799999999999988763     3455567889999999999999999999999998854     677


Q ss_pred             CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          267 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      +....++..+|.++...|++++|...|+++++.+
T Consensus       214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8889999999999999999999999999998765

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=4.2e-05  Score=63.82  Aligned_cols=249  Identities=15%  Similarity=0.122  Sum_probs=175.6

Q ss_pred             HhCcHHHHHHHHHHHHHHHHHhhCCC-chH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC--chH
Q 016124          112 KEGKAVDAESVFSRILKIYTKVYGEN-DGR-----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL--DDS  183 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~  183 (394)
                      ..|-+++|.++-++++...++....+ ...     ....+-.+..+-.-.|++.+|++....+.+.+.+.  +++  -..
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~--p~~~Llr~  364 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF--PTPLLLRA  364 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC--CchHHHHH
Confidence            45778889999888888766653322 111     12335566777788999999999999999998764  221  122


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Q 016124          184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  263 (394)
Q Consensus       184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  263 (394)
                      ..+.++..+|......+.++.|...|..|.+...+.     .-.+.+-.++|..|...|+-+.-.+.++.        .+
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~--------i~  431 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL--------IG  431 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh--------cC
Confidence            334556677877788899999999999998875432     22456677899999998876554433322        12


Q ss_pred             CCCC-------cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          264 PDDQ-------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       264 ~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      +.+.       ....+++..|...+.++++.||...+.+.+++....  ....-++..+..|+.+....|+.. ++.+..
T Consensus       432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~-es~nmv  508 (629)
T KOG2300|consen  432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTV-ESRNMV  508 (629)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchH-HHHhcc
Confidence            2221       123345666777888999999999999999987332  233445667888999999999999 999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC--chhhhhhHHH
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR--KEEKFPLKKR  380 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~  380 (394)
                      .-++++..++  ++.|-.......+-.++...|+  .++..+.|..
T Consensus       509 rpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  509 RPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             chHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            9999998886  5566666666667778888887  4555555444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=3e-06  Score=63.41  Aligned_cols=201  Identities=13%  Similarity=0.051  Sum_probs=121.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      +...+++++|.++|.++-.+++                        ...++..|=..|.++-+...+..  +..+.+.++
T Consensus        24 fgg~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~Y   77 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATTY   77 (288)
T ss_pred             cCCCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHH
Confidence            3444578888888877766543                        22333334344444443333322  222344455


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSLP  310 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~  310 (394)
                      ...+.+|.+ +++++|...++++++++...  +.....+.-+..+|.+|..- .++++|+.+|+++-+.+..-  .....
T Consensus        78 veA~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ss  152 (288)
T KOG1586|consen   78 VEAANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSS  152 (288)
T ss_pred             HHHHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhh
Confidence            555555544 47888888888888877654  12222334456788888765 89999999999999887542  11122


Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      .-.++...+..-...+++. +|+..|++.....     .+++    ..-.-+..-|.|+....+.-.+...+++-.++.|
T Consensus       153 ANKC~lKvA~yaa~leqY~-~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP  226 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYS-KAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP  226 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence            2345666777777888888 8998888876432     1122    2223445567777776777777666666666655


Q ss_pred             HHH
Q 016124          387 KYK  389 (394)
Q Consensus       387 ~~~  389 (394)
                      .+.
T Consensus       227 ~F~  229 (288)
T KOG1586|consen  227 AFT  229 (288)
T ss_pred             ccc
Confidence            543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=3.1e-06  Score=62.62  Aligned_cols=208  Identities=13%  Similarity=0.124  Sum_probs=131.7

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124            9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      +-.+...+..++..|..|-..|-+.-|.--|.+++.+.        |..+.+++.+|..+...|+|+.|.+.|...+++ 
T Consensus        58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-  128 (297)
T COG4785          58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-  128 (297)
T ss_pred             cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence            33455667778888988988999999998899988873        566778888999999999999999999988886 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                             +|..-.+..+.|..++.-|++.-|.+-+.+-.+.     .+++|-..- |..+   -...-++.+|...+.+-
T Consensus       129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR  192 (297)
T COG4785         129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQR  192 (297)
T ss_pred             -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHH
Confidence                   4556667778888888889999988877665543     333443221 1111   12344677776654432


Q ss_pred             HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124          169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                      .+-        .+...+.   .++..  ...|+..+ ...++++....+... .-......+++.+|..+...|+.++|.
T Consensus       193 ~~~--------~d~e~WG---~~iV~--~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~  257 (297)
T COG4785         193 AEK--------SDKEQWG---WNIVE--FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEAT  257 (297)
T ss_pred             HHh--------ccHhhhh---HHHHH--HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            221        1211111   11111  12233221 122333332211000 001123467888999999999999999


Q ss_pred             HHHHHHHH
Q 016124          249 RLLRICLD  256 (394)
Q Consensus       249 ~~~~~a~~  256 (394)
                      .+|+-++.
T Consensus       258 ~LfKLaia  265 (297)
T COG4785         258 ALFKLAVA  265 (297)
T ss_pred             HHHHHHHH
Confidence            99998876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=6.9e-08  Score=64.88  Aligned_cols=96  Identities=26%  Similarity=0.390  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++...        +
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            4678899999999999999999999876        23334778899999999999999999999998762        2


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ....++..+|.++...|++++|...+.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            22267889999999999999999999988764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=2e-07  Score=62.51  Aligned_cols=96  Identities=26%  Similarity=0.345  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124          188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  267 (394)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  267 (394)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++..        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            3578899999999999999999998875        2333467889999999999999999999998873        23


Q ss_pred             cchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          268 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      ....++..+|.++...|++++|...+.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33467889999999999999999999888753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.77  E-value=2.4e-06  Score=79.64  Aligned_cols=214  Identities=16%  Similarity=0.126  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      +|..+..|...-......++.++|.+..++|+....-.  ...+...++.++.|+-.   .-|.-+.-.+.|++|.+.+ 
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R--EeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR--EEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC- 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc--hhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc-
Confidence            45555556555566778999999999999999875211  11122233334444443   4455566677777777653 


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                              +...++..|..+|...+++++|.++++..++-+.        .....|..++..++.+++-+.|...+.+|+
T Consensus      1528 --------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 --------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             --------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                    2345678899999999999999999999988543        345678889999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124          298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  377 (394)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  377 (394)
                      ...     |. .+........|.+-++.|+.+ .+...|+-.+.        .+|...+.|.-..+.-.+.|+.+-+..+
T Consensus      1592 ~~l-----Pk-~eHv~~IskfAqLEFk~GDae-RGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1592 KSL-----PK-QEHVEFISKFAQLEFKYGDAE-RGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred             hhc-----ch-hhhHHHHHHHHHHHhhcCCch-hhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHH
Confidence            876     22 223445667889999999999 88888888775        3566677788888888999999999999


Q ss_pred             HHHHHHHHHHH
Q 016124          378 KKRLSNLRMKY  388 (394)
Q Consensus       378 ~~~a~~~~~~~  388 (394)
                      |++++.+.=..
T Consensus      1657 feRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1657 FERVIELKLSI 1667 (1710)
T ss_pred             HHHHHhcCCCh
Confidence            99998865433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.6e-07  Score=73.66  Aligned_cols=138  Identities=18%  Similarity=0.197  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc-------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      ...-|..+++.|+|..|...|++++.......+.+..       ....++.|++.++.++++|.+|+....+++.+    
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----  286 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----  286 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence            3557889999999999999999999887644322211       13457889999999999999999999999983    


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                          .|....+++.-|.++...|+++.|+..|++++++.     |++   ..+...|..+..+...+..+..++|.+++.
T Consensus       287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N---ka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN---KAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                56778899999999999999999999999999865     444   334445555555444444355667776665


Q ss_pred             H
Q 016124          342 I  342 (394)
Q Consensus       342 ~  342 (394)
                      -
T Consensus       355 k  355 (397)
T KOG0543|consen  355 K  355 (397)
T ss_pred             c
Confidence            3

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.76  E-value=2.1e-05  Score=73.74  Aligned_cols=229  Identities=14%  Similarity=0.026  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      |.....|..........++.++|.+.+++|+....-   ....+...+|..+-++...-|.-+.-.+.|++|.+.+.   
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence            444445666666778889999999999999876411   11222233333333334444566667778888877642   


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                          +  ..++..|..+|...+++++|.++++..++-+.+.          ..+|...+..+.++++-+.|...+.+|+.
T Consensus      1529 ----~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 ----A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred             ----h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence                2  2467788899999999999999999998876532          45667788999999999999999999998


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      ...+      ..........|.+-++.|+.+.+..+|+..+.        .+|.....|..+...-...|+.+.+..+|+
T Consensus      1593 ~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             hcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            6543      12344556678888999999999999998876        456677778888888888899999999999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          295 EALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      +++...      -.+..+..++..-.-|.+.
T Consensus      1659 Rvi~l~------l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred             HHHhcC------CChhHhHHHHHHHHHHHHh
Confidence            988753      2233344444444444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.76  E-value=5.9e-08  Score=59.44  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .+|..+...|++++|+..|++++.        .+|....++..+|.++..+|++++|+..|+++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578999999999999999999987        568899999999999999999999999999998754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.74  E-value=4.5e-06  Score=61.83  Aligned_cols=205  Identities=15%  Similarity=0.064  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      +...+..++..|..|-..|-+.-|.--|.+++.+        .|..+.+++.+|..+...|+|+.|.+.|...+++    
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4467778889999999999999999999999987        6778899999999999999999999999999886    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH-HH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE-EC  212 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~a  212 (394)
                          +|..-.+..|.|..+.--|++.-|.+-+.+-.+.       ++.+|... .|..   +-...-++.+|...+. ++
T Consensus       129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~  193 (297)
T COG4785         129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQRA  193 (297)
T ss_pred             ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHHH
Confidence                4555567788899999999999999887765542       23333322 1111   1223345666665443 22


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHH
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  292 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (394)
                      ....+.     ...+..+-..+|.+-.     +   ..++++..-.... ..-......+++.||..+...|+.++|..+
T Consensus       194 ~~~d~e-----~WG~~iV~~yLgkiS~-----e---~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~L  259 (297)
T COG4785         194 EKSDKE-----QWGWNIVEFYLGKISE-----E---TLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATAL  259 (297)
T ss_pred             HhccHh-----hhhHHHHHHHHhhccH-----H---HHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            222111     1111112222222211     1   1222222211100 000112346788999999999999999999


Q ss_pred             HHHHHHH
Q 016124          293 VLEALYI  299 (394)
Q Consensus       293 ~~~a~~~  299 (394)
                      |+-++.-
T Consensus       260 fKLaian  266 (297)
T COG4785         260 FKLAVAN  266 (297)
T ss_pred             HHHHHHH
Confidence            9988763

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.73  E-value=5.4e-05  Score=68.07  Aligned_cols=264  Identities=14%  Similarity=0.047  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC-CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      ....++......++.+|..+..++......... ......+......|.+....|++++|+++.+.++......   ...
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~  494 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYR  494 (894)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cch
Confidence            344567778889999999998887765433110 0111233344445778889999999999999999875432   223


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ....++..+|.+..-.|++++|..+..++.++.+..    ........+....+.++..+|+...  ..-.++.......
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~----~~~~l~~~~~~~~s~il~~qGq~~~--a~~~~~~~~~~~q  568 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH----DVYHLALWSLLQQSEILEAQGQVAR--AEQEKAFNLIREQ  568 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Confidence            345677889999999999999999999999998763    3334444555777889999993322  2222332222222


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .....+.........+.++...-+++.+..-....+......  ..++.. .-.+..|+.+....|++++|...+.+...
T Consensus       569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            222222211122222233333333666666655555543222  112222 22335899999999999999999998887


Q ss_pred             HHHHHcCCCChhH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          299 IREIAFGKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       299 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                      ......  .++.. +.+.......+..+|+.+ +|.....+
T Consensus       647 l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~-~a~~~l~~  684 (894)
T COG2909         647 LLLNGQ--YHVDYLAAAYKVKLILWLAQGDKE-LAAEWLLK  684 (894)
T ss_pred             HhcCCC--CCchHHHHHHHhhHHHhcccCCHH-HHHHHHHh
Confidence            764421  22222 222333334455667766 55555544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.72  E-value=3.9e-05  Score=67.52  Aligned_cols=210  Identities=15%  Similarity=0.172  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHH------HHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..|-.-|.+|....++++|+++|++.      +++.+-.++   ...+..--..|.-+...|+++.|+.+|-++-...+.
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            34556677888888899999888763      443322211   233334445577778888888888887655333221


Q ss_pred             hc---C--------------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 016124           91 NR---G--------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  153 (394)
Q Consensus        91 ~~---~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  153 (394)
                      +.   +              .+.......|..++.-|...|+|+.|+++|.++-..                ..-..+|.
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~  802 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG  802 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence            10   0              011122234555677788888888888887765321                12234677


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhhC------
Q 016124          154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKG------  221 (394)
Q Consensus       154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~------  221 (394)
                      ..|++++|.++.++..         ++  ......|...+.-+...|++.+|..+|      .+++.++.+..-      
T Consensus       803 k~~kw~da~kla~e~~---------~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir  871 (1636)
T KOG3616|consen  803 KAGKWEDAFKLAEECH---------GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR  871 (1636)
T ss_pred             ccccHHHHHHHHHHhc---------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence            7788888777665542         12  223445566666677777777776665      345555443321      


Q ss_pred             ---CCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          222 ---KEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       222 ---~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                         ..|++ ...+...+|.-+...|+...|...|-++-+
T Consensus       872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence               12222 345667788888999999999988877644

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.72  E-value=2.2e-05  Score=60.37  Aligned_cols=170  Identities=16%  Similarity=0.089  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      +..+++-|......|++++|...|+.....       .|..+..-.+...++..+.+.+++++|+...++-+...     
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----
Confidence            345777888889999999999999998753       34455556777899999999999999999999888763     


Q ss_pred             CCCccHHHHHHHHHHHHHHc-----ccH---HHHHHHHHHHHHHHHhhcCCCCCcchHH--------------HHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRS-----KNF---VEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGIT  279 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~la~~  279 (394)
                      +.||+...+++..|..+...     .+.   .+|+.-|+..+.-+     |+++....+              -..+|..
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary  176 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARY  176 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888776543     223   34444444444432     333332222              2356889


Q ss_pred             HHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124          280 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  334 (394)
Q Consensus       280 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~  334 (394)
                      |.+.|.+-.|+.-++..++..     ++.+.+..++..+..+|..+|-.+ +|..
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~  225 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK  225 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence            999999999999999998866     566777889999999999999887 6654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.9e-05  Score=59.31  Aligned_cols=191  Identities=11%  Similarity=0.091  Sum_probs=130.9

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ...+.++.+..-|+.|....+++.|=..|.++-+...+..  +..+.+.++...+.+|.+ ++..+|...++++++++..
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHh
Confidence            3455677888889999999999999999999988876642  334566777777777765 5999999999999999877


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      ..  .-...+.-+..+|.+|... .++++|+.+|+++-+.+..-  ......-.++...+..-...++|.+|+..|++..
T Consensus       106 ~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  106 MG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             hh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54  2233455677899999776 89999999999999987542  1112223455666777778899999999999987


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                      ...-...   --....-.-+..-|.++....+.-.+...+++
T Consensus       182 ~~s~~n~---LLKys~KdyflkAgLChl~~~D~v~a~~ALek  220 (288)
T KOG1586|consen  182 RSSLDNN---LLKYSAKDYFLKAGLCHLCKADEVNAQRALEK  220 (288)
T ss_pred             HHhccch---HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence            6532210   00011111223445556555665444444443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.71  E-value=3.6e-07  Score=65.08  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      +..-+++..+..+..|.-++..|++++|..+|+-..-.        ++...+.+..||.++..+++|++|+..|..+..+
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677788899999999999999999999765443        2333456889999999999999999999998876


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  128 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  128 (394)
                      .        +..+...+..|.|+..+|+.+.|...|..++.
T Consensus       101 ~--------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        101 L--------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             c--------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            2        23334577899999999999999999999887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.70  E-value=1.2e-07  Score=58.10  Aligned_cols=59  Identities=19%  Similarity=0.381  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .+|..+...|++++|+..|++++..        .|....++..+|.++..+|++++|+..|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999874        6788999999999999999999999999999986

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.69  E-value=3.2e-06  Score=56.95  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=86.3

Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      +-.-|......|+.+.|++.|.+++.++        |..+.+|++.+..+.-+|+.++|+.-+++++++.      ++..
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~t  111 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQT  111 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Cccc
Confidence            3445778889999999999999999884        5567789999999999999999999999999985      4455


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .....++...|.+|..+|+.+.|..-|+.+-++
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            666788899999999999999999999988765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.66  E-value=1.3e-06  Score=58.88  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH
Q 016124          273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  352 (394)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~  352 (394)
                      +-.-|......|+.+.|++.|.+++.+.        |..+.+|++-+..+.-+|+.+ +|++-+.+++++.    |+...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e-~ALdDLn~AleLa----g~~tr  112 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDE-EALDDLNKALELA----GDQTR  112 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChH-HHHHHHHHHHHhc----Cccch
Confidence            3445777888999999999999999877        666778999999999999999 9999999999874    44555


Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          353 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ....++...|.+|..+|+.+.|..-|+.+..++.++.
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            6677888999999999999999999999999987764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.65  E-value=1.3e-06  Score=67.68  Aligned_cols=102  Identities=23%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124          231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  310 (394)
Q Consensus       231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  310 (394)
                      .++.|.-+...|+|..|...|...++-+     ++++....+++.||++++.+|++++|...|..+.+-.     |++|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            6778888899999999999999988844     6778889999999999999999999999999998855     78888


Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124          311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                      ..+++..||.+...+|+.+ +|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence            8899999999999999999 9999999998754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.63  E-value=3.5e-06  Score=74.02  Aligned_cols=130  Identities=12%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchh--------HHHHHHHHHHHH
Q 016124           19 LLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--------KAVEIYHRVITI   87 (394)
Q Consensus        19 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~   87 (394)
                      ++..|..+...   ++..+|+.+|++++++        +|..+.++..++.++.....+.        .+.....+++.+
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            45566666544   4478999999999987        3566667777777665543333        222222222221


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  167 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  167 (394)
                            +..+....++..+|......|++++|...+++|+.+        .+. ..++..+|.++...|++++|++.|++
T Consensus       414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  123334577888899999999999999999999987        233 56899999999999999999999999


Q ss_pred             HHHH
Q 016124          168 ALRV  171 (394)
Q Consensus       168 a~~~  171 (394)
                      |+.+
T Consensus       479 A~~L  482 (517)
T PRK10153        479 AFNL  482 (517)
T ss_pred             HHhc
Confidence            9985

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.62  E-value=4.5e-05  Score=58.70  Aligned_cols=170  Identities=13%  Similarity=0.071  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  266 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  266 (394)
                      ..+.+-|......|++++|...|+.....     -+..|..-.+...++..+.+.+++++|+...++-+..+     |.|
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~  104 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTH  104 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCC
Confidence            44578888899999999999999987642     23445567788899999999999999999999988854     678


Q ss_pred             CcchHHHHHHHHHHHhh-----cChH---HHHHHHHHHHHHHHHHcCCCChhHHH--------------HHHHHHHHHHH
Q 016124          267 QSISFPMLHLGITLYHL-----NRDK---EAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVSIQTR  324 (394)
Q Consensus       267 ~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~  324 (394)
                      |+...+++..|.++...     .+..   +|...++..+..+     |+++-...              --..+|..|.+
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k  179 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYLK  179 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887643     2333   3444444444433     44432211              12357889999


Q ss_pred             hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124          325 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  377 (394)
Q Consensus       325 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  377 (394)
                      .|.+. .|+..++.+++-+.     +.+....++..+..+|...|-.++|...
T Consensus       180 r~~~~-AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         180 RGAYV-AAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             hcChH-HHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            99999 99999999887643     3466678889999999999999988764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=0.00011  Score=56.66  Aligned_cols=250  Identities=16%  Similarity=0.149  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      ++.+- -++-.|+|..++..-.+.-.       .  +........+.+.|..+|.+...+.-...+          ..+ 
T Consensus        12 LF~iR-n~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~~~-   70 (299)
T KOG3081|consen   12 LFNIR-NYFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKEG----------KAT-   70 (299)
T ss_pred             HHHHH-HHHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHcccccccccccccc----------cCC-
Confidence            34443 34457888777665443321       1  123344556677788888776544322211          111 


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...+...++.....-++.++-+.-..+-+..      ............-|.+|...|++++|++.......+       
T Consensus        71 ~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------  137 (299)
T KOG3081|consen   71 PLQAVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------  137 (299)
T ss_pred             hHHHHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------
Confidence            1223334444444444444333333322211      112222234445578899999999999988773322       


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH----cccHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRIC  254 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  254 (394)
                              .+...-..++.+..+.+-|...+++..++.+.          .++..||..+..    .+...+|.-+|++.
T Consensus       138 --------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~  199 (299)
T KOG3081|consen  138 --------EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEEL  199 (299)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence                    11122345677788888888888877665322          234455555543    24566666666654


Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124          255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  334 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~  334 (394)
                      -+        ..+.+...+...+.++..+|++++|...++.++...        +....++.++..+-...|... ++.+
T Consensus       200 s~--------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~  262 (299)
T KOG3081|consen  200 SE--------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTE  262 (299)
T ss_pred             hc--------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHH
Confidence            32        245566788899999999999999999999998733        344567888888888899876 5554


Q ss_pred             HHH
Q 016124          335 LLK  337 (394)
Q Consensus       335 ~~~  337 (394)
                      -+-
T Consensus       263 r~l  265 (299)
T KOG3081|consen  263 RNL  265 (299)
T ss_pred             HHH
Confidence            443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.60  E-value=1.5e-05  Score=61.35  Aligned_cols=241  Identities=14%  Similarity=0.122  Sum_probs=161.1

Q ss_pred             hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124           72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  151 (394)
Q Consensus        72 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  151 (394)
                      .+.++|+..|++++++-    +.....-..++-.+..+++.+|+|++-+..|.+.+...+.....+....  +.+++-..
T Consensus        41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy  114 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY  114 (440)
T ss_pred             cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence            47889999999999873    2223344567788889999999999999999999988776654443322  22333332


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC----ccH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH----PSF  227 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~  227 (394)
                      -....+.+--.++|+..++..+..    .+...+...-..+|.+|+..|+|.+-...+++....++...|.++    ...
T Consensus       115 iStS~~m~LLQ~FYeTTL~ALkdA----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL  190 (440)
T KOG1464|consen  115 ISTSKNMDLLQEFYETTLDALKDA----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL  190 (440)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhh----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence            234455556666777777666543    233344445567999999999999988888887777665555443    234


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                      ..++..-..+|..+.+..+-..+|++++.+...+   .||.+..+.. .=|..+.+.|+|++|-.-|-+|.+-+.+...|
T Consensus       191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp  267 (440)
T KOG1464|consen  191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP  267 (440)
T ss_pred             hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence            5556566778888888888888999999875444   4555443333 33567788899999988888887766553221


Q ss_pred             CChhHHHHHHHHHHHHHHhC
Q 016124          307 DSLPVGEALDCLVSIQTRLG  326 (394)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g  326 (394)
                       .....--+..|+..+.+.|
T Consensus       268 -RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  268 -RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             -chhHHHHHHHHHHHHHHcC
Confidence             1222233455677776665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=4.9e-07  Score=69.89  Aligned_cols=104  Identities=17%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH
Q 016124          273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  352 (394)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~  352 (394)
                      .++.|.-+...|+|.+|...|..-++.+     |+.+....++++||.++..+|+++ .|...|..+..-+     +.+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~-~Aa~~f~~~~k~~-----P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYE-DAAYIFARVVKDY-----PKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccch-HHHHHHHHHHHhC-----CCCC
Confidence            6788888999999999999999988866     788888999999999999999999 9999999988743     5677


Q ss_pred             HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          353 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ...+++..||.+....|+.++|...|+++++-.+.
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            88899999999999999999999999999875543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.57  E-value=0.00023  Score=57.92  Aligned_cols=256  Identities=18%  Similarity=0.100  Sum_probs=145.4

Q ss_pred             HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh---cccCCCc-hHH
Q 016124          110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKD---SNYMSLD-DSI  184 (394)
Q Consensus       110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~~~~-~~~  184 (394)
                      ....|+++.|..++.++-.......+......+..++++|......+ ++++|..+++++.+++..   .....++ ...
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999887642222223346778899999999999 999999999999999744   2112222 245


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                      ...++..++.+|...+.++.... ..+++...+...+ ++|..   +..--.+..+.++.+++.+.+.+++...      
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~------  151 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSV------  151 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhc------
Confidence            67788899999999888764443 3344444444332 33332   2122233333788888888888887632      


Q ss_pred             CCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCC--Cc-hHHHHHHHHH
Q 016124          265 DDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGE--DD-TKLLELLKRV  339 (394)
Q Consensus       265 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~-~~A~~~~~~a  339 (394)
                      +.+ ...........-+. ......|...+...+...   +.+. ++ ..... .+..++...+.  .. .+-++..+..
T Consensus       152 ~~~e~~~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r---~~~~-~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~  225 (278)
T PF08631_consen  152 DHSESNFDSILHHIKQLA-EKSPELAAFCLDYLLLNR---FKSS-EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL  225 (278)
T ss_pred             ccccchHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH---hCCC-hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence            111 11111111111112 233456666666655432   1111 22 22211 22223333221  12 0114444444


Q ss_pred             HHHHHhhcC-CCCHHHH----HHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          340 LRIQEREFG-SESEEVM----LTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       340 l~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      +....+..+ +-.+...    ..+-+.|.-..+.++|++|..+|+-++
T Consensus       226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            443333222 2333332    334455788889999999999999776

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.57  E-value=1.1e-06  Score=62.77  Aligned_cols=101  Identities=12%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      ++......+..|.-++..|++++|...|+-..-.        ++.....+..||.++..+++|++|+..|..+..+.   
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---  101 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---  101 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            3567778889999999999999999999876543        34456678999999999999999999999988763   


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                        .++|.   ..+..|.++...|+.+.|...|+.++.
T Consensus       102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence              23332   367889999999999999999999987

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.51  E-value=9.6e-06  Score=71.31  Aligned_cols=131  Identities=12%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHH--------HHHHHHHHHHH
Q 016124           60 SLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRILK  128 (394)
Q Consensus        60 ~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~  128 (394)
                      -++..|..+...   +++..|+.+|++|+++        +|+.+.++..++.++.....+.        .+.....+++.
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            344455555544   4478999999999987        6777888888777775543322        23333333222


Q ss_pred             HHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124          129 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  208 (394)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  208 (394)
                      +      +..+....++..+|......|++++|...+++|+++.       ++    ...+..+|.++...|++++|++.
T Consensus       413 l------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------ps----~~a~~~lG~~~~~~G~~~eA~~~  475 (517)
T PRK10153        413 L------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------MS----WLNYVLLGKVYELKGDNRLAADA  475 (517)
T ss_pred             c------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CC----HHHHHHHHHHHHHcCCHHHHHHH
Confidence            1      1122234667778888888999999999999999852       22    35778999999999999999999


Q ss_pred             HHHHHHH
Q 016124          209 LEECLLI  215 (394)
Q Consensus       209 ~~~a~~~  215 (394)
                      |++|+.+
T Consensus       476 ~~~A~~L  482 (517)
T PRK10153        476 YSTAFNL  482 (517)
T ss_pred             HHHHHhc
Confidence            9999886

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.50  E-value=6.5e-06  Score=69.07  Aligned_cols=120  Identities=24%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124          191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  270 (394)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  270 (394)
                      .+..++...++++.|+.++++..+        .+|..   ...++.++...++..+|++.+.+++.        ..|...
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~--------~~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~  234 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRE--------RDPEV---AVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDS  234 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHh--------cCCcH---HHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCH
Confidence            345566677899999999988654        24543   44589999999999999999999986        345567


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                      ..+...+..+...++++.|++..++++...        |....+|..|+.+|...|+++ .|+..+..
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e-~ALlaLNs  293 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE-NALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH-HHHHHHhc
Confidence            888889999999999999999999999865        777789999999999999999 89876653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.50  E-value=7.4e-06  Score=68.77  Aligned_cols=120  Identities=19%  Similarity=0.135  Sum_probs=98.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccH
Q 016124          148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  227 (394)
Q Consensus       148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  227 (394)
                      +-..+...++++.|+..+++..+.       .|+      +...++.++...++..+|+..+.+++.        ..|..
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~-------~pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d  233 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER-------DPE------VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQD  233 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc-------CCc------HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCC
Confidence            445566778999999999987652       121      224589999999999999999999985        34555


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                      ...+...+..+...++++.|+...+++..+        .|....+|..|+.+|...|++++|+..+..+
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            778888999999999999999999999984        5778889999999999999999999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.50  E-value=1.3e-05  Score=67.12  Aligned_cols=162  Identities=17%  Similarity=0.062  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhhh---chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh---------hchhHHHHHHHHHHH
Q 016124           19 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT   86 (394)
Q Consensus        19 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~   86 (394)
                      ++..|......+   ....|+.+|.+++..     .+-+|..+.++..++.+++..         ....+|....++|++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            355565554443   346778888888843     123577788888888888654         234456666667766


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  166 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  166 (394)
                      +        ++..+.++..+|.+....++++.|...|++|+.+        +|..+.++...|.+....|+.++|.+.++
T Consensus       333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5        5667789999999999999999999999999987        67788899999999999999999999999


Q ss_pred             HHHHHHHhcccCCCchHHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 016124          167 KALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE  211 (394)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~  211 (394)
                      +++++.       |..  .......+-. .|+ ....+.|+.+|-+
T Consensus       397 ~alrLs-------P~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        397 KSLQLE-------PRR--RKAVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             HHhccC-------chh--hHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            999853       221  1212222222 333 4456777777654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.48  E-value=0.00042  Score=56.43  Aligned_cols=255  Identities=17%  Similarity=0.141  Sum_probs=145.4

Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHh-c-CCCCc----c
Q 016124           26 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTESA----D   98 (394)
Q Consensus        26 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~~----~   98 (394)
                      ...+|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.++.+.. . ...++    .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999877642222233467888999999999999 9999999999999997551 1 11222    3


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...++..++.+|...+.++...+ ..++++..+.-++ ++|....  .. -.+....++.+++.+.+.+++....-    
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~-l~il~~~~~~~~~~~~L~~mi~~~~~----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LK-LEILLKSFDEEEYEEILMRMIRSVDH----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HH-HHHHhccCChhHHHHHHHHHHHhccc----
Confidence            45678889999999988765444 4445555544332 3333321  11 12233378899999999888875321    


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcc--cHHHH--HHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRI  253 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~  253 (394)
                       ++.+. ..+ .....-+.. .....|...+...+...-  .  ..++ ..... -+..++...+  +....  ++....
T Consensus       154 -~e~~~-~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~--~--~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~  224 (278)
T PF08631_consen  154 -SESNF-DSI-LHHIKQLAE-KSPELAAFCLDYLLLNRF--K--SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEE  224 (278)
T ss_pred             -ccchH-HHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHh--C--CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHH
Confidence             11111 111 111111122 234566666666554321  1  1111 22221 1222222222  22222  334444


Q ss_pred             HHHHHHhhcCC-CCCcch----HHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          254 CLDIMTKTVGP-DDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       254 a~~~~~~~~~~-~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .+....+..+. -++...    ..+.+.|...+..++|++|..+|+-++.
T Consensus       225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            44433333222 222221    2345668888999999999999997763

It is also involved in sporulation [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.47  E-value=5.4e-05  Score=58.38  Aligned_cols=225  Identities=15%  Similarity=0.129  Sum_probs=145.9

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124            9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      +.....-..++-.+..+++..|+|++-...|.+.+...+.....+....  +.+.+-..-....+.+--..+|+..+...
T Consensus        58 gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~AL  135 (440)
T KOG1464|consen   58 GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYISTSKNMDLLQEFYETTLDAL  135 (440)
T ss_pred             cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            3344444566778888999999999999999999887765433332211  11122121222333444455666666655


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVEL  164 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~  164 (394)
                      +...  +.......-..||.+|+..|+|.+-.+.+.+.-..++.--|.++.    ....+|..-..+|..+.+-.+-..+
T Consensus       136 kdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~l  213 (440)
T KOG1464|consen  136 KDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKAL  213 (440)
T ss_pred             Hhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHH
Confidence            5432  333444556679999999999999888888877777654444332    3455666667788888888888889


Q ss_pred             HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124          165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  242 (394)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  242 (394)
                      |++++.+-...    |.+..+..+...=|..+.+.|++++|-.-|-+|.+-+.+.+.+ ......-+..||..+++.|
T Consensus       214 YeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  214 YEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhHHHHHHHHHHHHHHcC
Confidence            99999876543    4554555555555777888999999998888887766554422 1223333555677776655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.47  E-value=8.6e-05  Score=53.84  Aligned_cols=131  Identities=11%  Similarity=0.005  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                      .-...||......|++.+|...|++++.       +-.......+..+++..+..+++..|...+++..+...   ....
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qals-------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---a~r~  159 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALS-------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---AFRS  159 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhc-------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---ccCC
Confidence            4456788888888999999999888876       22334455677888888888998888888887665321   1111


Q ss_pred             hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      |   .....++.++...|.+. +|...|+.++..+.     +    .......+..+.++|+..+|..-+....
T Consensus       160 p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         160 P---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             C---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            2   24567788888888888 88888888887532     1    2334445778888888877766554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.5e-06  Score=64.68  Aligned_cols=106  Identities=18%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRI  342 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~A~~~~~~al~~  342 (394)
                      .+|.....|..||.+|..+|+++.|...|.+|+++.     +++|+   .+..+|.++..+.  ....++...+++++..
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPE---ILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            468888999999999999999999999999999976     55554   4666666655443  3334888999999863


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          343 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                              +|....++..||..+..+|++.+|...++..++..+
T Consensus       223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence                    566788899999999999999999999999987643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=8.6e-06  Score=63.99  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=93.3

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITI   87 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~   87 (394)
                      .+|..+.-|..||.+|..+|+++.|...|.+++++.     ++.   ...+..+|.++....   ...++...+++++..
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            467777889999999999999999999999999984     233   345556676665543   456888999999886


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  150 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  150 (394)
                              +|....+.+.||..++..|+|.+|...++..++..    +++.|....+-..++.
T Consensus       223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~  273 (287)
T COG4235         223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIAR  273 (287)
T ss_pred             --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHH
Confidence                    66778899999999999999999999999998863    4455555444444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.46  E-value=7.7e-05  Score=54.09  Aligned_cols=136  Identities=19%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..-...+|......|++.+|..+|++++.-       --......+..++...+..+++..|...+++..+.-..     
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-----  156 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-----  156 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----
Confidence            345667899999999999999999998763       12334567788999999999999999999888765211     


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                       .........+|..+...|++.+|...|+.++..+.       ++.    .....+..+..+|+.++|..-+....+...
T Consensus       157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-------g~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-------GPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-------CHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence             11223455678999999999999999999998652       221    224467788899999998887766655443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.44  E-value=1.1e-05  Score=56.33  Aligned_cols=90  Identities=17%  Similarity=0.015  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  307 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  307 (394)
                      ...++.-|.-.+..|+|++|++.|+.....+     +..+....+...|+.+|...|++++|+..+++-+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            4567788899999999999999998876632     4456667888999999999999999999999999876     89


Q ss_pred             ChhHHHHHHHHHHHHHHhCC
Q 016124          308 SLPVGEALDCLVSIQTRLGE  327 (394)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~g~  327 (394)
                      ||.+.-+++..|.++..+..
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhh
Confidence            99998999999988887754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.43  E-value=2.2e-05  Score=54.83  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124          188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  267 (394)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  267 (394)
                      .+..-|......|+|++|++.++......     +..+....+...|+.+|...+++++|+..+++.+++     .|.||
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~hp   81 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTHP   81 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCC
Confidence            34778899999999999999998765532     244556678889999999999999999999999985     47899


Q ss_pred             cchHHHHHHHHHHHhhcC---------------hHHHHHHHHHHHHHH
Q 016124          268 SISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR  300 (394)
Q Consensus       268 ~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~  300 (394)
                      .+..+++..|.++..+..               ..+|...|++.++.+
T Consensus        82 ~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   82 NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            999999999999888765               566777777666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.43  E-value=0.0011  Score=58.87  Aligned_cols=212  Identities=14%  Similarity=0.029  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKK------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      |-.-|.+|....++++|+++|++      ++++.+-.     -+..+...-...|..+...|+++.|+..|-++-...+.
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            44556777777888888888765      44443321     22333344456778888899999998887655332211


Q ss_pred             h---hC-CCCcc-------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 016124          219 Y---KG-KEHPS-------------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  281 (394)
Q Consensus       219 ~---~~-~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  281 (394)
                      +   .+ ...+.             ....|-.++.-|...|+|+-|.++|.++-..                ..-...|-
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~  802 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG  802 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence            1   11 01111             1122334567777778888887777654220                11223566


Q ss_pred             hhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc------------hHHHHHHHHHH--HHHHhhc
Q 016124          282 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD------------TKLLELLKRVL--RIQEREF  347 (394)
Q Consensus       282 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------------~~A~~~~~~al--~~~~~~~  347 (394)
                      +.|+|.+|.++-+++.       ++  ..+...+..-+.-....|++.            .+|+.+|.+.-  .-.-++.
T Consensus       803 k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv  873 (1636)
T KOG3616|consen  803 KAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV  873 (1636)
T ss_pred             ccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence            6777777766555432       12  223333444444444444444            05555554421  0001112


Q ss_pred             CCCCHH-HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          348 GSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       348 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      +..|++ ..++...+|.-|...|+..+|...|-++-+.+.
T Consensus       874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka  913 (1636)
T KOG3616|consen  874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA  913 (1636)
T ss_pred             HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH
Confidence            223333 346778889999999999999998887766544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=1.4e-05  Score=58.39  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  223 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  223 (394)
                      .+-.-|.-++..|+|++|..-|..|++++...     .......++.+.|.+...++.++.|+.-+.+++++        
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------  163 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------  163 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence            34556788899999999999999999998643     33555667889999999999999999999999986        


Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      .|....++...+.+|.+...+++|++-|++.++.
T Consensus       164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5667778888999999999999999999998873

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=1.9e-05  Score=57.76  Aligned_cols=103  Identities=17%  Similarity=0.115  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      +..+-.-|+-++..|+|.+|..-|..|+.+++...   ......++.+.|.+...++.++.|+.-+.+++++        
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------  163 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------  163 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence            44456678899999999999999999999986532   2355667888999999999999999999999998        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .|....++...+.+|..+..|++|+.-|.+.++.
T Consensus       164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5667788888899999999999999999998876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.38  E-value=3.6e-06  Score=70.31  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ..|.....++++|..|...|+|++|+..|++++++     .+++.....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45778899999999999999999999999999998     3444444467999999999999999999999999986

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=0.0001  Score=61.69  Aligned_cols=320  Identities=11%  Similarity=0.047  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-------h
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL-------N   91 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~   91 (394)
                      +...+..-+..+.|+....+.+..-.+-     .++..+.  ++.--..|+..|.+... ...++...+-..       .
T Consensus        20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~-----~~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   20 LLCQAHEQFNNSEFDRCLELLQELETRG-----ESSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS   91 (696)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHhcc-----cccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence            4455666778889998888776654432     2211111  22223334444544322 222222221111       1


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      .+-+.......+++.|.+++....+..|+..........+...   ...........-..+....+-++|+.++.-.-++
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~  168 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI  168 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222333455778889999999999999988777666544331   1222223334445566667778887766544333


Q ss_pred             HHhc--ccCCCc----------hHHHH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          172 IKDS--NYMSLD----------DSIME-----------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       172 ~~~~--~~~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                      ....  ...+..          ++..+           .+.......+....+..-+..-.+-++.+        ..+..
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--------a~~s~  240 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--------AQDSS  240 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--------cCCCc
Confidence            2211  000000          00000           01111112222222222222222222211        11334


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHcC
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALY-IREIAFG  305 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~  305 (394)
                      .++...+..+...|++.+|.+.+... .+.+...+...|...  ..+.++|.+++..|.|.-+..+|.+|++ ...+.-.
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            45666788899999999999887643 222222222233322  3457899999999999999999999996 4333321


Q ss_pred             CCC---------hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 016124          306 KDS---------LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  367 (394)
Q Consensus       306 ~~~---------~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  367 (394)
                      .-.         .....++++.|..+...|++. .|.++|.+++..+.+     .   +..|..+|.++..
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl-~AfqCf~~av~vfh~-----n---PrlWLRlAEcCim  381 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL-LAFQCFQKAVHVFHR-----N---PRLWLRLAECCIM  381 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcH-HHHHHHHHHHHHHhc-----C---cHHHHHHHHHHHH
Confidence            111         122567889999999999999 999999999998754     2   3567778877654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=0.00099  Score=56.11  Aligned_cols=296  Identities=18%  Similarity=0.147  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc--hHhhhHhHHHHHHHhCcHHHHHHHHHHHHH-HHHHhhC
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKVYG  135 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~  135 (394)
                      .++...+..++..|++.+|.+.+...- +.+...+.-.|.  ....++++|.+++..|.|.-+..+|.+|++ .+.....
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            345567888899999999988776432 211111112233  234568999999999999999999999996 4433311


Q ss_pred             C--C-------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC------
Q 016124          136 E--N-------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG------  200 (394)
Q Consensus       136 ~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------  200 (394)
                      .  .       ......++++.|..|...|++-.|.++|.++...+...      +    ..|..+|.+.....      
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n------P----rlWLRlAEcCima~~~~l~e  389 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN------P----RLWLRLAECCIMALQKGLLE  389 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC------c----HHHHHHHHHHHHHhhhhhhh
Confidence            1  0       11234578999999999999999999999999987653      1    22344444433210      


Q ss_pred             -------------------------------------------ChHHHHHHHHHHHHHHHHh------------------
Q 016124          201 -------------------------------------------RGQEGRELLEECLLITEKY------------------  219 (394)
Q Consensus       201 -------------------------------------------~~~~A~~~~~~a~~~~~~~------------------  219 (394)
                                                                 -.+=|.-+++.++-+..+.                  
T Consensus       390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~  469 (696)
T KOG2471|consen  390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS  469 (696)
T ss_pred             hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence                                                       0122333444444332100                  


Q ss_pred             ----------------hC-------CCCcc--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          220 ----------------KG-------KEHPS--------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       220 ----------------~~-------~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                                      .|       +..|.        ...++.+.+.+-...|+.-.|+..-.+.++.         +.
T Consensus       470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~  540 (696)
T KOG2471|consen  470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------AD  540 (696)
T ss_pred             CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hh
Confidence                            00       01111        1234556677778899999999988888774         33


Q ss_pred             chHHHHHHHHHH-----HhhcChHHHHHHHHHHH------H--HHHHHcCC-------------C-------ChhH--HH
Q 016124          269 ISFPMLHLGITL-----YHLNRDKEAEKLVLEAL------Y--IREIAFGK-------------D-------SLPV--GE  313 (394)
Q Consensus       269 ~~~~~~~la~~~-----~~~g~~~~A~~~~~~a~------~--~~~~~~~~-------------~-------~~~~--~~  313 (394)
                      ...++..||.+|     ....+..+|...+.--+      .  ....-++.             .       .++.  ..
T Consensus       541 lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v  620 (696)
T KOG2471|consen  541 LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGV  620 (696)
T ss_pred             hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHH
Confidence            444555555554     45677777777664411      0  00000110             1       1111  33


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                      .+++||.++.-+|+++ +|..++..|..+..+..   .+   .+...--.+-...|+...|...+++.
T Consensus       621 ~~~nLa~a~alq~~~d-qAk~ll~~aatl~hs~v---~~---~A~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  621 LFANLAAALALQGHHD-QAKSLLTHAATLLHSLV---NV---QATVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHHHHHHHHhcccH-HHHHHHHHHHHhhhccc---cH---HHHHHHHHHHHhcCCCcchHHHHHhc
Confidence            5778999999999999 99999999988765321   11   11111122345678888888777664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.35  E-value=1e-06  Score=48.41  Aligned_cols=41  Identities=32%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  310 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  310 (394)
                      +.++.++|.+|...|++++|..++++++.+.+..+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999985

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00015  Score=55.66  Aligned_cols=176  Identities=17%  Similarity=0.187  Sum_probs=128.6

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHhh-------CCCc------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          106 LGSLFIKEGKAVDAESVFSRILKIYTKVY-------GEND------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       106 l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      -+.+....|+..+.+.-+.......+++.       .+.+      .....+.+.+..++...|.|.-....+.+.++..
T Consensus       128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~  207 (366)
T KOG2796|consen  128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY  207 (366)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence            35666778888887766655444333221       1111      1234467788889999999999999999998832


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                            ++..|.+.   ..+|++-...|+.+.|..+++..-+...+..  .-.....+..+.+.+|.-.+++..|...+.
T Consensus       208 ------~e~~p~L~---s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~  276 (366)
T KOG2796|consen  208 ------PEQEPQLL---SGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRFFT  276 (366)
T ss_pred             ------CcccHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHHHHHHh
Confidence                  23334433   6689999999999999999998766554443  223345567788999999999999999998


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      +.+.        .++..+.+..+-|.|..-.|+..+|++.++.++.+.
T Consensus       277 ~i~~--------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  277 EILR--------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hccc--------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8776        345666777889999999999999999999887754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00059  Score=52.62  Aligned_cols=138  Identities=12%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .+.+.+..++...|.|.-....+.+.++.       +++........+|.+-+..|+.+.|..++++.-+.....    .
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL----~  246 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL----D  246 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh----h
Confidence            45667788888899999999999988873       334444556778899999999999999999776554432    1


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      .-.....+..+.+.++...+++.+|...+.+++..        ++..+.+.++.|.+.+-.|+..+|++.++.++++
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11222345578888999999999999988887753        5566777888999999999999999999888774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.34  E-value=2.9e-06  Score=70.79  Aligned_cols=72  Identities=7%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      .+|..+..++++|..|+..|+|++|+..|++++.+     .++++....+++++|.+|..+|++++|+..+++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46788899999999999999999999999999997     3444444467999999999999999999999999986

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00059  Score=52.74  Aligned_cols=154  Identities=18%  Similarity=0.066  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      ...-|.++...|++++|+........+             .+...--.++.++.+++-|...++++.++-+.        
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------  169 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED--------  169 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence            334467888889999998877763222             22222345677888888888888888776322        


Q ss_pred             HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       141 ~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                        .++..||..+.    ..+++.+|.-+|++.-+..      ++.    ...++.++.+...+|++++|...++.++.. 
T Consensus       170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~------~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-  236 (299)
T KOG3081|consen  170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT------PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDK-  236 (299)
T ss_pred             --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc------CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence              12333444333    3456777887777754421      111    334578899999999999999999999873 


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                             .+....++.|+..+-...|...++..-+-.-+
T Consensus       237 -------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  237 -------DAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             -------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence                   45557788888888888888877766554433

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.00074  Score=52.72  Aligned_cols=228  Identities=14%  Similarity=0.126  Sum_probs=147.9

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      .+++-....+++++|+..|.+.+.-.-........+.-.+...++.+|...|++..--+......+.....   ..|...
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~   84 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT   84 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence            45666667788999999988877541000000112234567789999999999887666665555544433   234444


Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          143 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       143 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      .+...+-..+ .....++.-+..+...++...+.    .........-..+...+...|+|.+|+....-.+.-.++.. 
T Consensus        85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-  159 (421)
T COG5159          85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-  159 (421)
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence            4444333332 34567888888888888876542    11122223335678889999999999999998887776654 


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP--MLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                       +.+.....+..-..+|....+..++...+..+.......+-   |....+  -..-|..+....+|.-|..+|-++++-
T Consensus       160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence             55666666666788888889998888888777665444322   222221  122255666778999999999999886


Q ss_pred             HHH
Q 016124          300 REI  302 (394)
Q Consensus       300 ~~~  302 (394)
                      +..
T Consensus       236 ft~  238 (421)
T COG5159         236 FTL  238 (421)
T ss_pred             ccc
Confidence            643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.30  E-value=0.0013  Score=53.89  Aligned_cols=298  Identities=13%  Similarity=0.051  Sum_probs=187.8

Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch-Hh
Q 016124           23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VL  101 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~  101 (394)
                      |.+....|+-..|..+-.++-.+..    .+.+-.+..  .-+..-.-.|+++.|.+-|+..+.         +|+. .-
T Consensus        91 GliAagAGda~lARkmt~~~~~lls----sDqepLIhl--LeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRll  155 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLS----SDQEPLIHL--LEAQAALLEGDYEDARKKFEAMLD---------DPETRLL  155 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhh----ccchHHHHH--HHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHH
Confidence            4444556777777777776655432    233333332  234555678999999999987764         2322 22


Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      -+..|-.--...|..+-|..+-+++....        |....+....-...+..|+++.|+++.+.......    ..++
T Consensus       156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----ie~~  223 (531)
T COG3898         156 GLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----IEKD  223 (531)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----hchh
Confidence            23333344457899999999999887753        33344444555667889999999999987765432    1122


Q ss_pred             hHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          182 DSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      ......+-..-+.... ...+...|.....++.++        .|+....-..-+..+...|+..++-.+++.+.+.   
T Consensus       224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---  292 (531)
T COG3898         224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---  292 (531)
T ss_pred             hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---
Confidence            2111111111122211 223567777777777664        4555566666788999999999999999988873   


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                         ..||++..       +|....--+.++.-++++-.+.     .-.|+...+....+..-...|++. .|..--+.+.
T Consensus       293 ---ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~-~ARa~Aeaa~  356 (531)
T COG3898         293 ---EPHPDIAL-------LYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFS-AARAKAEAAA  356 (531)
T ss_pred             ---CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchH-HHHHHHHHHh
Confidence               35666543       4444444456666677765544     223555667788888888889888 7777666665


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHh-cCchhhhhhHHHHHH
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKRLSN  383 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~  383 (394)
                      .+.        | ...++..|+.+-... |+-.++..++.+++.
T Consensus       357 r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         357 REA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            432        1 234566777777665 888888888887764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.26  E-value=2.6e-06  Score=46.73  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                      +.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999884

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.26  E-value=0.0026  Score=55.91  Aligned_cols=183  Identities=16%  Similarity=0.088  Sum_probs=121.6

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCchHHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCcc
Q 016124          154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS  226 (394)
Q Consensus       154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~  226 (394)
                      -.|+-+.++..+.++.+.      .+-..+..   .-.|+.....+..    ....+.|.+.+.....        ..|.
T Consensus       200 F~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--------~yP~  265 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--------RYPN  265 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--------hCCC
Confidence            468888899888887651      11222221   1222222222222    2344556666655544        2466


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                      ....+...|.++...|+.++|++.+++++....+.    ......+++.++.++..+++|++|..++.+..+.       
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------  334 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------  334 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence            67778889999999999999999999988532222    1223456789999999999999999999988762       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124          307 DSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  362 (394)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  362 (394)
                      +....+...+..|.++...|+.       + +|.+++.++-....+..+...|-..-+.....
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~  396 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQ  396 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Confidence            2233445566778889999988       7 88899999888887766666564444443333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.25  E-value=5.7e-06  Score=51.11  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=46.8

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ...|++++|+..|++++..        .|....+...+|.++...|++++|...+.+++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999999999987        5667888999999999999999999999998865

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.24  E-value=0.0015  Score=52.35  Aligned_cols=203  Identities=22%  Similarity=0.290  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .....+..+...+++..+...+...+..      ...+.....+...+..+...+++..++..+..++....      .+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  128 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------DP  128 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc
Confidence            3445555566666666666666555542      01233344555566666666666666666666554310      11


Q ss_pred             chHhhhHhHHH-HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           98 DLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        98 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                        .......+. ++...|+++.|...+.+++...     +............+..+...++++.|+..+.+++...... 
T Consensus       129 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-  200 (291)
T COG0457         129 --DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-  200 (291)
T ss_pred             --chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-
Confidence              111222233 6666777777777777664320     0001233334444444666667777777776666653220 


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                              ....+..++..+...+++++|...+..++...        +........++..+...+.++++...+.+++.
T Consensus       201 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         201 --------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             --------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    12334556666666666677776666666542        11233344455555555556666666666655

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.22  E-value=0.00046  Score=45.89  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=87.1

Q ss_pred             HhhhHhHH--HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          100 VLPLFSLG--SLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       100 ~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      +.+|..|+  .-....|-|++|...+++++++.+.+.....-    -.+.++..|+..+..+|+|++++....+++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            34444444  33456789999999999999998776332211    2455778899999999999999999999999887


Q ss_pred             hcccCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          174 DSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       174 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      +......+ ...+..+.++.+..+...|+.++|+..|+.+-++..+..|.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            65444443 34455666889999999999999999999999887665543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.21  E-value=1.5e-05  Score=50.03  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=52.2

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..+|...+++++|+..+++++.+        +|.....+...|.++...|++++|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788999999999999999987        5667788999999999999999999999999976

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.21  E-value=0.00066  Score=59.51  Aligned_cols=176  Identities=19%  Similarity=0.127  Sum_probs=115.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHH---HHHHHHHHHHHHHH----hhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSIL---LVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLV  100 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  100 (394)
                      -.||-+.++..+.++.+. .   +-..|.   ..-.|+.....+..    ....+.|.+.+......        .|...
T Consensus       200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~  267 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA  267 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence            357888888888877541 1   111221   11112222221211    23445565555555543        46667


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      ..+...|.++...|+.++|+..+++++......    ..-...++..++.++..+++|++|..++.+..+..        
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--------  335 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--------  335 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence            778889999999999999999999988543221    11234567899999999999999999999987731        


Q ss_pred             chHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                       ....+...+..|.++...|+.       ++|.+++.++-....+..|...|...
T Consensus       336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~  389 (468)
T PF10300_consen  336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEK  389 (468)
T ss_pred             -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHH
Confidence             122233446788999999999       88888888888777766655555433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=98.19  E-value=7.5e-05  Score=62.79  Aligned_cols=133  Identities=15%  Similarity=0.156  Sum_probs=100.2

Q ss_pred             CCchHHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI   80 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   80 (394)
                      +.+|..+.++..++.+++..         .+..+|....++++++        ++..+.++..+|.+....|+++.|...
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~  360 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHIL  360 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence            56788888888888888754         2334566666666665        234466788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHH-HHHHCCCH
Q 016124           81 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAH-AKCANGNA  158 (394)
Q Consensus        81 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~  158 (394)
                      |++|+.+        +|..+.+++..|.+....|+.++|...+++++++        +|. .......+-. .|+ ....
T Consensus       361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~  423 (458)
T PRK11906        361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL  423 (458)
T ss_pred             HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence            9999987        7888999999999999999999999999999987        332 2222223332 443 4557


Q ss_pred             HHHHHHHHH
Q 016124          159 EEAVELYKK  167 (394)
Q Consensus       159 ~~A~~~~~~  167 (394)
                      ++|+.+|-+
T Consensus       424 ~~~~~~~~~  432 (458)
T PRK11906        424 KNNIKLYYK  432 (458)
T ss_pred             hhhHHHHhh
Confidence            788877755

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.19  E-value=9.6e-06  Score=50.10  Aligned_cols=53  Identities=25%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       111 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ...|++++|+..|++++..        +|....+...+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999987        4555667889999999999999999999998874

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.19  E-value=1.6e-05  Score=49.96  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       234 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      |..+|...+++++|+.++++++.+        +|.....+...|.++...|++.+|...++++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356789999999999999999984        56677888999999999999999999999999754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.001  Score=53.23  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=114.4

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                      -+.+....|++.+|-..+++.++-        .|....+...--.+++..|+...-...+++.+...    .++-|-...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY  176 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY  176 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence            345566778888888888887764        44444555555677888888888888777766432    334555566


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  223 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  223 (394)
                      .....+..+...|-|++|++..++++++.+.       +   ..+...++.++...|++.++.++..+.-...+.    .
T Consensus       177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~-------D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s  242 (491)
T KOG2610|consen  177 VHGMYAFGLEECGIYDDAEKQADRALQINRF-------D---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----S  242 (491)
T ss_pred             HHHHHHhhHHHhccchhHHHHHHhhccCCCc-------c---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----h
Confidence            6667788888999999999999999886321       1   334466888888999999999888775544321    1


Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                      ......-+...+.++...+.++.|++.|..-+
T Consensus       243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  243 WMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            11222334456777888889999998887643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.11  E-value=0.0029  Score=50.55  Aligned_cols=228  Identities=27%  Similarity=0.344  Sum_probs=160.8

Q ss_pred             hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHH
Q 016124           30 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  109 (394)
Q Consensus        30 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  109 (394)
                      +.+..+...+...+.....      ..........+..+...+.+..+...+......      ...+.....+...+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  104 (291)
T COG0457          37 GELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLL  104 (291)
T ss_pred             hhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHH
Confidence            4455555555554443210      012455667788888999999999998888764      1245566778888999


Q ss_pred             HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      +...+++..+...+..++.....      +  .......+. ++...|++++|...+.+++...       +........
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~  169 (291)
T COG0457         105 LEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-------PELNELAEA  169 (291)
T ss_pred             HHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCccchHHH
Confidence            99999999999999888765211      1  112223333 8999999999999999996521       100122333


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  267 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  267 (394)
                      ....+..+...++++.++..+.+++...        +. ....+..++..+...++++.|...+..++...        +
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~  233 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLN--------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P  233 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence            4556666888999999999999988763        22 45677889999999999999999999998842        2


Q ss_pred             cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          268 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .....+..++..+...+.++++...+.+++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         234 DNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            244556677777777777999999998887754

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.09  E-value=4e-05  Score=61.11  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      +-..|+-|+.+|.|++|+.+|.+++..        .|..+..+.+.+..|++..+|..|+.-+..|+.+        +..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence            345689999999999999999999886        4666678889999999999999999999999987        345


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ...+|...+..-..+|...+|.+-++.++++-
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            66788999999999999999999999999863

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.07  E-value=0.0053  Score=52.35  Aligned_cols=285  Identities=15%  Similarity=0.071  Sum_probs=153.3

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM  143 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~  143 (394)
                      +.+....|+++.-..+..    ..       ..........-+......++++++..+.+++.............. ...
T Consensus         5 ~eaaWrl~~Wd~l~~~~~----~~-------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~   73 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLS----QS-------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR   73 (352)
T ss_pred             HHHHHhcCChhhHHHHHh----hc-------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            456667788887322222    11       111113334445555588999999999999887765433221111 111


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC--
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--  221 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--  221 (394)
                      .+..+.. +....+.+++..+......          .......+...   --.+...........+..+......+.  
T Consensus        74 ~y~~l~~-lq~L~Elee~~~~~~~~~~----------~~~~~~~l~~~---W~~Rl~~~~~~~~~~~~il~~R~~~l~~~  139 (352)
T PF02259_consen   74 AYPSLVK-LQQLVELEEIIELKSNLSQ----------NPQDLKSLLKR---WRSRLPNMQDDFSVWEPILSLRRLVLSLI  139 (352)
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhhcc----------cHHHHHHHHHH---HHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence            2222211 1222233333333211100          01111111000   001111112223334444444443332  


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH-HH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-IR  300 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~  300 (394)
                      .........+..++.+..+.|+++.|...+.++.....    ........+....+.++...|+..+|+..++..+. ..
T Consensus       140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            11445677889999999999999999999988766321    11122445566778999999999999999998887 22


Q ss_pred             HHHc-------------------------CCCChhHHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhhcCC
Q 016124          301 EIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFGS  349 (394)
Q Consensus       301 ~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~------g~~~~~A~~~~~~al~~~~~~~~~  349 (394)
                      ....                         .......+.++..+|......      +..+ ++...|+++.++       
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~-------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKL-------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHh-------
Confidence            2210                         011123355666677776666      5566 788888888765       


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCc-----------------hhhhhhHHHHHHHHHH
Q 016124          350 ESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK  387 (394)
Q Consensus       350 ~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~~~  387 (394)
                       .|....++..+|..+...-+.                 ..|+..|-+++..+++
T Consensus       288 -~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  288 -DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             -ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence             344555677777766543221                 2366667777666555

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=0.0059  Score=54.08  Aligned_cols=179  Identities=13%  Similarity=-0.004  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHH-----HHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      ..|..++......-.++-|...|-++-..     .+++ +    ....--...+.+-..-|+|++|++.|-.+-..    
T Consensus       693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr----  763 (1189)
T KOG2041|consen  693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----  763 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence            44566777666666677776666554221     1111 0    00000112344445557888888777544211    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                            +.+      ..++...|++-...++++..-      .+.++...-.++.++|..+..+..+++|.++|...-..
T Consensus       764 ------DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~  825 (1189)
T KOG2041|consen  764 ------DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT  825 (1189)
T ss_pred             ------hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence                  111      233455566555444443211      12234445667888888888888888888888775332


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                                        .+...+++....+++-..+..        ..    |+....+-.+|..+...|--++|.+.|
T Consensus       826 ------------------e~~~ecly~le~f~~LE~la~--------~L----pe~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  826 ------------------ENQIECLYRLELFGELEVLAR--------TL----PEDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             ------------------HhHHHHHHHHHhhhhHHHHHH--------hc----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence                              234455555555544322211        11    222233445667777777777776655


Q ss_pred             H
Q 016124          252 R  252 (394)
Q Consensus       252 ~  252 (394)
                      -
T Consensus       876 L  876 (1189)
T KOG2041|consen  876 L  876 (1189)
T ss_pred             H
Confidence            4

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0045  Score=49.74  Aligned_cols=160  Identities=12%  Similarity=-0.022  Sum_probs=112.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  107 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  107 (394)
                      ..|++.+|-..+++.++-        .|....+...--..++..|+...-...+++.+...    .++.|-...+...++
T Consensus       115 ~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYA  182 (491)
T ss_pred             ccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHH
Confidence            344455544444444442        34334444445567788888888888887776542    235566677777888


Q ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHH
Q 016124          108 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  187 (394)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  187 (394)
                      ..+...|-|++|++..++++++        ++....+....+.++...|++.++.++..+.-...+.      ..-....
T Consensus       183 FgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~------s~mlasH  248 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ------SWMLASH  248 (491)
T ss_pred             hhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh------hhHHHhh
Confidence            9999999999999999999987        4445566778899999999999999998876554432      1222233


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 016124          188 MRIDLAELLHIVGRGQEGRELLEECL  213 (394)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~a~  213 (394)
                      -|...|.++...+.|+.|++.|..-+
T Consensus       249 NyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  249 NYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhHHHHHhhhcccchhHHHHHHHHHH
Confidence            34556888888999999999998654

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0048  Score=49.58  Aligned_cols=314  Identities=14%  Similarity=0.128  Sum_probs=190.1

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ..+.......++++++..+.+.+...+..  ..++    ..-.....+|..+...|+..+-..........+....   .
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K   83 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K   83 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence            34445556667788888888877642211  1111    2334567899999999999888777777666554432   2


Q ss_pred             cchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           97 ADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      +..+.....+-..+.. .+..+.-+..+..++++..+.   .... .-..-..+...|...++|.+|+......+.-.++
T Consensus        84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK  160 (411)
T KOG1463|consen   84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK  160 (411)
T ss_pred             HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444333 345567778888888876552   1111 1223356888999999999999999998888776


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHcccHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~  253 (394)
                      .    +|...+..++..-..+|....+..+|...+..|.......+-  +|...... ..-|.++....+|..|..+|-+
T Consensus       161 l----DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyE  234 (411)
T KOG1463|consen  161 L----DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYE  234 (411)
T ss_pred             c----ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHH
Confidence            4    455666667777788999999999999988887766655542  33332222 2336667777899999999999


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124          254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  333 (394)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~  333 (394)
                      +.+-+...  .++.....++..+-.+-...+..++--..+.-=..+.  .   ..+ ...++..++..+..      ..+
T Consensus       235 AfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~n------RSL  300 (411)
T KOG1463|consen  235 AFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGN------RSL  300 (411)
T ss_pred             HHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcC------CcH
Confidence            98865443  2233444455555555556667666544443221111  1   111 23455566665533      334


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 016124          334 ELLKRVLRIQEREFGSESEEVMLTLKKVVS  363 (394)
Q Consensus       334 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~  363 (394)
                      ..|++|+.-++.-+. .+|-+..-+..|-.
T Consensus       301 kdF~~AL~~yk~eL~-~D~ivr~Hl~~Lyd  329 (411)
T KOG1463|consen  301 KDFEKALADYKKELA-EDPIVRSHLQSLYD  329 (411)
T ss_pred             HHHHHHHHHhHHHHh-cChHHHHHHHHHHH
Confidence            456666655544332 23444333333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.00  E-value=3.8e-05  Score=61.20  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      -..|+.|+.+|.|++|+.+|.+++...        |.....+.+.+..|+....|..|+.-+..|+.+        +...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            457899999999999999999998863        333445778899999999999999999999987        3456


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..+|...|..-..+|...+|.+-++.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            788999999999999999999999999987

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.98  E-value=0.0025  Score=47.02  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      .+...++..+...|++++|+..++.++..       ..|......+-..+|++...+|++++|+..+....         
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------  153 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---------  153 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------
Confidence            34567788999999999999999999863       23445555566889999999999999998876432         


Q ss_pred             CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      ++..........|.++...|+-++|...|++++..
T Consensus       154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            22234445566799999999999999999999984

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.98  E-value=0.0017  Score=43.30  Aligned_cols=119  Identities=14%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             HHHHHHHHHH--HHHHhhchhHHHHHHHHHHHHHHHhcCCCCc----chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           57 LVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        57 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      ++.+|..|+.  -...-|.|++|...++++.++.+.++.....    -.+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3444555543  3456688999999999999998776543222    234577889999999999999999999999988


Q ss_pred             HHhhCCC---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124          131 TKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus       131 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .+...-.   ....+.+.++.+..+...|+.++|+..|+.+-++..+.
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            7652211   12345566788999999999999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.94  E-value=0.0013  Score=47.89  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch--------------HHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      +...|......|+...++..+++++.++...+-++.              .....+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344566667778999999999999988764332221              124556667788889999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      +..        +|..-.++..+..++...|+..+|+..|++......+-+|..
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            987        566778889999999999999999999999998887665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.92  E-value=0.0016  Score=47.34  Aligned_cols=113  Identities=25%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------------SIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                      +...|......|+.+.++..+++++.+++.....+...            .....+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            33445556677889999999999998876431111111            123445567788889999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      +..        +|..-..+..+..++...|+..+|+..|++......+-+|..
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            986        566777888999999999999999999999998887766644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00012  Score=55.31  Aligned_cols=102  Identities=16%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      +.-+..-|..++....|+.|+..|.+++.+        .|..+..+.+-+.++.+..+++.+..-..+++++        
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------   73 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------   73 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence            344566788889999999999999999986        3566677889999999999999999999999997        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      .|..+..++.+|........|++|+..++++..+.+..
T Consensus        74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            57788999999999999999999999999999887764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.91  E-value=0.0012  Score=50.90  Aligned_cols=102  Identities=24%  Similarity=0.202  Sum_probs=82.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----Ccc
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPS  226 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~  226 (394)
                      +.....+++|+..|.-|+-...-   .+.++...+.++..+|.+|...|+.+....++++|+..+.+.....     ..+
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            34456788999999988877654   2456667888899999999999999888888899888887765332     224


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          227 FVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ....++.+|.+..+.|++++|..+|.+++.
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            466788899999999999999999999887

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.90  E-value=0.0002  Score=55.12  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=79.9

Q ss_pred             hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC-----CHHHHHH
Q 016124          283 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE-----SEEVMLT  357 (394)
Q Consensus       283 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~  357 (394)
                      ...+++|++.|.-|+-...- .+.++...+..+..+|++|...|+.+ ....++++|++.+.+.+...     ..+...+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            45678899999888876543 34455577888999999999999977 78888888888877665433     2355678


Q ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          358 LKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      ++.+|.+..+.|++++|..+|.+++...
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            8899999999999999999999987643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.0007  Score=51.59  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc---hH-------HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   85 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   85 (394)
                      ..++..-|+-++..|+|.+|...|+.|+...+.+.-..   .|       .....+.+.+.|+...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999998776653222   22       234467788999999999999999999888


Q ss_pred             HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..        +|....+++..|.+....=+.++|..-|.+++++
T Consensus       258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            75        6788899999999999999999999999999986

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.88  E-value=0.0098  Score=48.96  Aligned_cols=267  Identities=14%  Similarity=0.074  Sum_probs=169.8

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH-H
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-M  143 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~  143 (394)
                      |.+-.-.|+-..|.++-.++-.+..    .+.+..+  +..-+..-.-.|+++.|.+-|+-.+.         +|++. .
T Consensus        91 GliAagAGda~lARkmt~~~~~lls----sDqepLI--hlLeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRll  155 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLS----SDQEPLI--HLLEAQAALLEGDYEDARKKFEAMLD---------DPETRLL  155 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhh----ccchHHH--HHHHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHH
Confidence            4444556788888888777765542    2333333  33346667788999999999988764         34432 1


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  223 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  223 (394)
                      -+..|-.--...|..+.|..+-+.+......       -+.   +....-...+..|+++.|+.+.+......  ..+++
T Consensus       156 GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-------l~W---A~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~  223 (531)
T COG3898         156 GLRGLYLEAQRLGAREAARHYAERAAEKAPQ-------LPW---AARATLEARCAAGDWDGALKLVDAQRAAK--VIEKD  223 (531)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------Cch---HHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchh
Confidence            2333333345789999999999999876432       222   22334445678999999999998766542  12111


Q ss_pred             Ccc--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124          224 HPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  301 (394)
Q Consensus       224 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  301 (394)
                      ..+  .+..+...+.... ..+...|...-.++.++        .|+..-.-..-+..++..|+..++-.+++.+-+.  
T Consensus       224 ~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--  292 (531)
T COG3898         224 VAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--  292 (531)
T ss_pred             hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence            111  1112222222222 23567777777777663        3555556667789999999999999999988764  


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                          ..||+....|     ++.+.|+   .++.-++++-.+..     -.|+..++...++..-...|++..|..--+.+
T Consensus       293 ----ePHP~ia~lY-----~~ar~gd---ta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         293 ----EPHPDIALLY-----VRARSGD---TALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             ----CCChHHHHHH-----HHhcCCC---cHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence                4677654433     3445554   67777777765432     24566777888888889999998888777666


Q ss_pred             HHHHH
Q 016124          382 SNLRM  386 (394)
Q Consensus       382 ~~~~~  386 (394)
                      ..+.+
T Consensus       356 ~r~~p  360 (531)
T COG3898         356 AREAP  360 (531)
T ss_pred             hhhCc
Confidence            65543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.87  E-value=0.013  Score=49.98  Aligned_cols=128  Identities=17%  Similarity=0.163  Sum_probs=94.7

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch------
Q 016124           66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------  139 (394)
Q Consensus        66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------  139 (394)
                      .-..+..+...-++..++|+++        +|+.+.+|..|+.-  ......+|+.+++++++..+..++.+..      
T Consensus       176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~  245 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH  245 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence            3344556777888888888887        46667777766642  2344788999999999888776543211      


Q ss_pred             -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124          140 -----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  208 (394)
Q Consensus       140 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  208 (394)
                                 ....+...+|.+..+.|+.++|++.++..++...        ......++.++..++...+.|.++..+
T Consensus       246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p--------~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP--------NLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC--------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence                       1234567899999999999999999999887431        122355779999999999999999888


Q ss_pred             HHH
Q 016124          209 LEE  211 (394)
Q Consensus       209 ~~~  211 (394)
                      +.+
T Consensus       318 L~k  320 (539)
T PF04184_consen  318 LAK  320 (539)
T ss_pred             HHH
Confidence            776

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00013  Score=55.19  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      +..-|..++...+|..|+..|.+++.+        +|..+..+.+-+.++++..+++.+..-..+++++        .|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            445577788888999999999999886        6777888999999999999999999999999987        677


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .+...+.+|........|++|+..+.++..+.+..
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            88899999999999999999999999999988775

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.86  E-value=0.0042  Score=46.50  Aligned_cols=112  Identities=18%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      ......++..+|..|...|+.++|++.|.++.+..     .........+..+..+....+++.....+..++-......
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            34677889999999999999999999999987753     2334567788888999999999999999999998887652


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                        .+..........-|..+...++|.+|...|-.+...+
T Consensus       107 --~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  107 --GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             --chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence              2222222333445666777899999999998876543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.83  E-value=0.0054  Score=45.91  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=88.0

Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      ......++..+|..|...|++++|.+.|.++.+.+     .........+.++..+....+++.....+..++-.+... 
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence            44567789999999999999999999999987753     234456777888999999999999999999999988765 


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                         +.+..........-|..+...++|.+|...|-.+..
T Consensus       106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence               334444445555667778889999999998877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.82  E-value=0.0043  Score=45.82  Aligned_cols=139  Identities=20%  Similarity=0.194  Sum_probs=97.3

Q ss_pred             HHHHHHHHhhhchH---HHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 016124           20 LHMGSMYSTLENYE---KSMLVYQRVINVLESRYGK-------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   83 (394)
Q Consensus        20 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   83 (394)
                      ...|+-|+...+.+   +|-..|++++.........             ....-.-+...++..+...|++++|+..++.
T Consensus        35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~  114 (207)
T COG2976          35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ  114 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            34566676665554   6777788877655321110             0111223345677888999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           84 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      ++...     .|......+-.+|+.+...+|.+++|+..+....         ++..........|.++...|+-++|..
T Consensus       115 ~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         115 ALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             HHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHHHHhhhHHHHcCchHHHHH
Confidence            88652     2333445566789999999999999998876532         233444556678999999999999999


Q ss_pred             HHHHHHHHH
Q 016124          164 LYKKALRVI  172 (394)
Q Consensus       164 ~~~~a~~~~  172 (394)
                      .|++++...
T Consensus       181 ay~kAl~~~  189 (207)
T COG2976         181 AYEKALESD  189 (207)
T ss_pred             HHHHHHHcc
Confidence            999999863

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.82  E-value=0.0073  Score=51.46  Aligned_cols=147  Identities=18%  Similarity=0.102  Sum_probs=79.4

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  186 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  186 (394)
                      ..-..+..+.+.-++..++|+++        +|+.+.++..|+.-  ...-..+|+.+++++++..+..  .+.+     
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~--lg~s-----  237 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS--LGKS-----  237 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh--hchh-----
Confidence            33344556677777777777776        34445555555431  2334677778888877765432  0000     


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  266 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  266 (394)
                             ......|..-+..  ..           .+......+...+|.+..+.|+.++|++.++..++..      ..
T Consensus       238 -------~~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~  291 (539)
T PF04184_consen  238 -------QFLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PN  291 (539)
T ss_pred             -------hhhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Cc
Confidence                   0000111110000  00           0111123445567777778888888887777776521      11


Q ss_pred             CcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          267 QSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                      .+...+..+|..++...+.+.++...+.+-
T Consensus       292 ~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  292 LDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            134456677777777888777777766653

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.75  E-value=0.019  Score=48.08  Aligned_cols=205  Identities=12%  Similarity=0.093  Sum_probs=120.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124          115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  194 (394)
Q Consensus       115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~  194 (394)
                      .+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+-      ..+......+....|.
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p------~~~~~~~~~i~~~yaf  187 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP------TCDVANQHNIKFQYAF  187 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC------ccchhcchHHHHHHHH
Confidence            3444444555555555544432222233455666677889999998888877655431      1112222334466778


Q ss_pred             HHHH---cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHhhc
Q 016124          195 LLHI---VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       195 ~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~  262 (394)
                      ++.+   .|+.++|+..+..++..       ..+....++..+|.+|...         ...++|+..|.++.++     
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-----  255 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-----  255 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----
Confidence            8888   89999999998886543       2334455677788877543         2355666666666553     


Q ss_pred             CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC----CChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK----DSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                        + + ....-.|++.++...|...+...-+++.........|.    +..........++.+..-.|+++ +|...+++
T Consensus       256 --~-~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~-ka~~a~e~  330 (374)
T PF13281_consen  256 --E-P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE-KAIQAAEK  330 (374)
T ss_pred             --C-c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH-HHHHHHHH
Confidence              2 2 12233577878888887655554444443222222211    11222233455777778889999 99999999


Q ss_pred             HHHH
Q 016124          339 VLRI  342 (394)
Q Consensus       339 al~~  342 (394)
                      ++..
T Consensus       331 ~~~l  334 (374)
T PF13281_consen  331 AFKL  334 (374)
T ss_pred             Hhhc
Confidence            8865

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.74  E-value=0.019  Score=48.02  Aligned_cols=205  Identities=13%  Similarity=0.149  Sum_probs=120.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHH
Q 016124           31 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  110 (394)
Q Consensus        31 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  110 (394)
                      .+..+.....+.+...+..++...........++-.+|....+|+.-+++.+..-.+    ...+.+....+....|.++
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL  189 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL  189 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence            333333444445544444333322233445556667788888888888777664433    1112233445566778888


Q ss_pred             HH---hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhcccC
Q 016124          111 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus       111 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      .+   .|+.++|+..+..++.-       .......++..+|.+|-.         ....++|+..|.++.++..     
T Consensus       190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-----  257 (374)
T PF13281_consen  190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-----  257 (374)
T ss_pred             hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----
Confidence            88   89999999999887543       223333456666776643         2246778888888777531     


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                        +  ..  .-.|++.++...|...+...-+++.........+    .+..........++.+..-.|++++|.+.++++
T Consensus       258 --~--~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  258 --D--YY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             --c--cc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              1  11  1156777777777654444333333311111111    122233445567788888899999999999998


Q ss_pred             HHH
Q 016124          255 LDI  257 (394)
Q Consensus       255 ~~~  257 (394)
                      ...
T Consensus       332 ~~l  334 (374)
T PF13281_consen  332 FKL  334 (374)
T ss_pred             hhc
Confidence            873

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.014  Score=45.90  Aligned_cols=228  Identities=14%  Similarity=0.080  Sum_probs=150.4

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..+++-....+++++|+..|.+.+.-.-..........-.+...++.+|...|++..--+......+......   .|..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence            3466777788999999999988876411100001113344577899999999998877766666655554432   3444


Q ss_pred             HhhhHhHHHHH-HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124          100 VLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus       100 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ..+...|-.-+ .....++.-+..+...++...+-.  ..-.....-..+...++..|+|.+|+....-.+.-.++.   
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---  158 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---  158 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---
Confidence            44444443332 234567777888888887765421  011112233567888999999999999999988877764   


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                       ++.+.+..++..-..+|....+..++..-+..|.......+.  +|.... .-..-|..++...+|..|..+|-++++-
T Consensus       159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence             455566667777788999999999988888877766655542  232221 1122356677788999999999999885


Q ss_pred             H
Q 016124          258 M  258 (394)
Q Consensus       258 ~  258 (394)
                      +
T Consensus       236 f  236 (421)
T COG5159         236 F  236 (421)
T ss_pred             c
Confidence            4

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.71  E-value=0.0017  Score=42.88  Aligned_cols=82  Identities=20%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             HHHhCcHHHHHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          110 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      ....|+|.+|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.++.    .|...+..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a   83 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA   83 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence            4578999999999999999876643222 12455678889999999999999999999999999874    455555555


Q ss_pred             HHHHHHH
Q 016124          189 RIDLAEL  195 (394)
Q Consensus       189 ~~~la~~  195 (394)
                      +..+..+
T Consensus        84 l~~~~~l   90 (94)
T PF12862_consen   84 LSWLANL   90 (94)
T ss_pred             HHHHHHH
Confidence            5555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.71  E-value=8.3e-05  Score=38.79  Aligned_cols=32  Identities=13%  Similarity=0.092  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          357 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      ++.+||.+|...|++++|+++|++++.+.++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            46789999999999999999999999887654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0011  Score=52.95  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=91.6

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +...+.-+-.-|+-|+...+|..|+..|.+.+..-    .++....+..|.+.+.+....|+|..|+.-..+++.+    
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            44567778888999999999999999999998752    2334456778899999999999999999999999886    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                          .|....+++.-+.|+..+.++.+|..+++..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                67788899999999999999999999999887663

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0016  Score=49.67  Aligned_cols=107  Identities=23%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC---cc-------hHhhhHhHHHHHHHhCcHHHHHHHHHHH
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES---AD-------LVLPLFSLGSLFIKEGKAVDAESVFSRI  126 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  126 (394)
                      ...++..-|+-++..|+|.+|...|+.|+...+...-...   |.       ....+.+.+.|+...|+|-++++.....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            4567888899999999999999999999988776543222   22       2346778899999999999999999888


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          127 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      +..        +|....+++..|......-+..+|..-+.+++++
T Consensus       257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            865        6777889999999999999999999999999985

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.58  E-value=0.00029  Score=36.75  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      ++.+||.+|...|++++|+.+|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4688999999999999999999999877654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.57  E-value=0.0016  Score=42.99  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 016124          238 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  316 (394)
Q Consensus       238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  316 (394)
                      ....|++.+|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.++.  .+......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence            3567999999999999998766553222 11345667889999999999999999999999999886  44444445555


Q ss_pred             HHHHH
Q 016124          317 CLVSI  321 (394)
Q Consensus       317 ~l~~~  321 (394)
                      .+..+
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            55443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.56  E-value=9.2e-05  Score=38.14  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .++..+|.++..+|++++|+..|++++++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.08  Score=49.57  Aligned_cols=144  Identities=16%  Similarity=0.131  Sum_probs=83.8

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ..+|..+|......|...+|++.|-++          ++|.   .+.....+....|.|++-++++..+.+..++.    
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---- 1166 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVREP---- 1166 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc----
Confidence            356677777777777777777777654          2332   34555666677788888777777766654331    


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  259 (394)
                       .      +-..+...|.+.++..+-.++.          .|+++..    ....|.-....|.|+.|.-+|...     
T Consensus      1167 -~------id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1167 -Y------IDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred             -c------chHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence             1      0022334555556555433332          1232222    234566666667777666555432     


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                                 .-+..|+..+...|+|..|....++|-
T Consensus      1221 -----------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1221 -----------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                       224567777777788877777766653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.52  E-value=0.046  Score=46.63  Aligned_cols=132  Identities=16%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT  216 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~  216 (394)
                      .......+...+.+....|+++.|...+.++.......   ...   ...+....+.+....|+..+|+..++..+. ..
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            34566788999999999999999999999987643211   111   223346678999999999999999988887 22


Q ss_pred             HHhhC-------------------------CCCccHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          217 EKYKG-------------------------KEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       217 ~~~~~-------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      ....+                         ......+.++..+|......      +..+++...|..+..+        
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence            22100                         01122345566666666666      7777788888887774        


Q ss_pred             CCcchHHHHHHHHHHHhh
Q 016124          266 DQSISFPMLHLGITLYHL  283 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~  283 (394)
                      .|....++..+|..+...
T Consensus       288 ~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  288 DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ChhHHHHHHHHHHHHHHH
Confidence            344455667777665543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.47  E-value=0.03  Score=49.94  Aligned_cols=64  Identities=20%  Similarity=0.076  Sum_probs=34.3

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH-----HHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI-----YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                      +..+..++..-...-.++-|+..|-+.-+.     .++.     .....--...+.+-.--|+|++|.+.|..+
T Consensus       692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~  760 (1189)
T KOG2041|consen  692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDA  760 (1189)
T ss_pred             hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence            355666777766666777777776654321     1111     000001123344555568888888877553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.45  E-value=0.00042  Score=35.61  Aligned_cols=30  Identities=27%  Similarity=0.595  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINV   45 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   45 (394)
                      +.+++.+|.+|..+|++++|+..|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            467899999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.0033  Score=50.36  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ..+..+..-|.-|+...+|..|...|.+.+..      ..+++...+..|.|.|.+....|+|..|+.-..+++.+    
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            46667778899999999999999999999885      34677777889999999999999999999999998874    


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                          .|....++..-+.++....++.+|..+++..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                57778889999999999999999999998887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.41  E-value=0.00058  Score=37.56  Aligned_cols=42  Identities=36%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  278 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  278 (394)
                      .++..+|..|...|++++|++.|+++++.        +|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999983        5667777777764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.40  E-value=0.00052  Score=37.76  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  108 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
                      .++..+|..|...|++++|+..|+++++.        .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999987        4556666666654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.36  E-value=0.0006  Score=34.97  Aligned_cols=31  Identities=19%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVL   46 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   46 (394)
                      +.+++.+|.+++..|++++|+.+|++++.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            4578999999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.34  E-value=0.0082  Score=48.99  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh-hcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       230 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                      +|..+.....+.+..+.|..+|.++..        ........|...|.+-.. .++.+.|...|+.+++.+     +..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence            455666777777889999999999864        233455677788888666 566666999999999876     333


Q ss_pred             hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      +   ..+......+...|+.+ .|..+|++++...     +.......+|......-...|+.+....+.+++.+..++
T Consensus        70 ~---~~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   70 P---DFWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             H---HHHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             H---HHHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            3   34555567778889888 9999999988531     111214567778888888999999999999888877644

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.33  E-value=0.00024  Score=36.54  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .++..+|.++...|++++|+..|++++.+.++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            56889999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.30  E-value=0.14  Score=47.23  Aligned_cols=191  Identities=18%  Similarity=0.162  Sum_probs=107.6

Q ss_pred             HhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHH
Q 016124          112 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  191 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  191 (394)
                      ..+++.+|.....+.+.-        +|....+...-|.++.++|+.++|..+++.. ..      ..+++..   ++..
T Consensus        21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~------~~~~D~~---tLq~   82 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG------LKGTDDL---TLQF   82 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc------CCCCchH---HHHH
Confidence            557788888887777654        5555556666788899999999999655543 32      2223222   3356


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124          192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  271 (394)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  271 (394)
                      +-.+|..+|++++|..+|+++...        .|. -..+..+=.+|.+.+.|.+-.+   .++++++..  +..+..  
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~~--pk~~yy--  146 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKNF--PKRAYY--  146 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--Ccccch--
Confidence            788999999999999999999874        344 3444555566666666654322   233333322  223332  


Q ss_pred             HHHHHHHHHHhhcChHHHHH-H-HHHHHHHHHHHcCCC-Chh-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          272 PMLHLGITLYHLNRDKEAEK-L-VLEALYIREIAFGKD-SLP-VGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~-~-~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                      .|..+..+.......++... . +--|-++....+... ... .++. ...-.+...+|.++ +|.+.+..
T Consensus       147 fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~-eal~~l~~  215 (932)
T KOG2053|consen  147 FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQ-EALEFLAI  215 (932)
T ss_pred             HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHH-HHHHHHHH
Confidence            23334444444545444443 1 111112222222222 111 1221 22234566778787 88887743

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.29  E-value=0.00029  Score=36.06  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHH
Q 016124           81 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  120 (394)
Q Consensus        81 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  120 (394)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6777776        6888999999999999999999986

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.28  E-value=0.00025  Score=36.30  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHH
Q 016124          123 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  162 (394)
Q Consensus       123 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  162 (394)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6777776        5777789999999999999999986

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.23  E-value=0.15  Score=46.22  Aligned_cols=283  Identities=12%  Similarity=0.020  Sum_probs=165.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHh
Q 016124           31 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADLVLPLFS  105 (394)
Q Consensus        31 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  105 (394)
                      +...|..+++.+.+.          ....+...+|.++..-     .+.+.|+.+++.+...+.+..   ......+.+.
T Consensus       227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~  293 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG  293 (552)
T ss_pred             hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence            346677777776553          2344566677776543     589999999999987322211   1113447788


Q ss_pred             HHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccc
Q 016124          106 LGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus       106 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      +|.+|....     ++..|..++.++-+.       ++|   .+...+|.++....   ++..|.++|..|...      
T Consensus       294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------  357 (552)
T KOG1550|consen  294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------  357 (552)
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence            999998854     677899999888764       233   35677888877655   578999999998763      


Q ss_pred             CCCchHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc-ccHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR  252 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~  252 (394)
                       + .    ..+...++.+|..-    -+...|..++.++.+.       .++.   +...++.++.-. ++++.+...+.
T Consensus       358 -G-~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~  421 (552)
T KOG1550|consen  358 -G-H----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYL  421 (552)
T ss_pred             -C-C----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHH
Confidence             1 1    23346677776542    4678999999988764       2222   233333333222 66666666555


Q ss_pred             HHHHHHHhhcCCCCCcchHHHH-HHHHHHHhh----cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--
Q 016124          253 ICLDIMTKTVGPDDQSISFPML-HLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--  325 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  325 (394)
                      ...+...+     .+.....+. .........    .+...+...+.++..       ..   ...+...|+.+|..-  
T Consensus       422 ~~a~~g~~-----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g---~~~a~~~lgd~y~~g~g  486 (552)
T KOG1550|consen  422 YLAELGYE-----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-------QG---NADAILKLGDYYYYGLG  486 (552)
T ss_pred             HHHHhhhh-----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-------cc---CHHHHhhhcceeeecCC
Confidence            44432211     111111111 111011111    133344444444332       22   234567788877655  


Q ss_pred             -CC-CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-c--CchhhhhhHHHHHHHH
Q 016124          326 -GE-DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-G--RKEEKFPLKKRLSNLR  385 (394)
Q Consensus       326 -g~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~~  385 (394)
                       +. ++ .|...|.++..-         .  .....++|.++..- |  ....|.++|.++....
T Consensus       487 ~~~d~~-~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  487 TGRDPE-KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             CCCChH-HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence             33 55 777777777642         1  66788888887752 1  1567888887776543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.22  E-value=0.012  Score=43.12  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             CccHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC----hHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR----DKEAEKLVLEA  296 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~a  296 (394)
                      +|..+..+++.|.++..+.++   .++..+++.++.-+++.+. -+|....++.++|.+|...+.    ..+|..+|++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            566678888888888777555   4466666666665554432 247778899999999987653    45666777777


Q ss_pred             HHHHHHH
Q 016124          297 LYIREIA  303 (394)
Q Consensus       297 ~~~~~~~  303 (394)
                      ...+++.
T Consensus       100 ~~~FqkA  106 (186)
T PF06552_consen  100 TEYFQKA  106 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.2  Score=47.17  Aligned_cols=58  Identities=19%  Similarity=0.125  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..|..+|......|...+|++.|-+|          ++|   ..+..........|.|++-..++..+.+-
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            35777888888888888888877654          222   34556666777788888888877766554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.17  E-value=0.0075  Score=44.07  Aligned_cols=92  Identities=12%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124           74 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  150 (394)
Q Consensus        74 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  150 (394)
                      |+.|.+.++.....        +|..+..+++-|.++..+.++   .++..+++.++.-++..+. -+|....++.++|.
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            34455555544433        566677788888888777555   3455566555555444321 15666778889999


Q ss_pred             HHHHCC----CHHHHHHHHHHHHHHHHh
Q 016124          151 AKCANG----NAEEAVELYKKALRVIKD  174 (394)
Q Consensus       151 ~~~~~g----~~~~A~~~~~~a~~~~~~  174 (394)
                      +|...+    +..+|..+|++|.+.+++
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            887754    445666666666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.11  E-value=0.05  Score=44.48  Aligned_cols=134  Identities=10%  Similarity=0.094  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      +|..+.....+.+..+.|...|.+|+.        .......+|...|.+-+. .++.+.|...|+.+++.+..     +
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----D   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----C
Confidence            355666777777889999999999863        233445677788888666 56666699999999987522     2


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                      +   ..+......+...|+.+.|..+|++++...       +.......++......-...|+.+....+.+++.+..
T Consensus        70 ~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   70 P---DFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             H---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3   334445567788999999999999998753       1222133455666777778899998888888777653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.10  E-value=0.0011  Score=34.01  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      .++..+|.+|...|++++|...|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4688999999999999999999999999876

...

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.18  Score=43.89  Aligned_cols=258  Identities=18%  Similarity=0.121  Sum_probs=141.3

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      +..-..+...++++.  ....+++........++    +.....-+..+...|+.+.|+.+++.+++..-+      .-.
T Consensus       235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~  302 (546)
T KOG3783|consen  235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVK  302 (546)
T ss_pred             HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHH
Confidence            344445555555555  44444444444433332    223344566666777778888888887762211      123


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR  170 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~a~~  170 (394)
                      ...++.+|+++..+.+|.+|-..+....+..       +...+ .|..++ -++        ...|+-++|..+++....
T Consensus       303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~  374 (546)
T KOG3783|consen  303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE  374 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence            4567788888888888888888887766542       11111 222222 222        224466666666655555


Q ss_pred             HHHhcccCCCchHH-------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          171 VIKDSNYMSLDDSI-------------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       171 ~~~~~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      .........|-...                   .+..+..++.++.......  ..-..+.........-.+..+..--+
T Consensus       375 l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s--~~~l~k~~~~~~~~~~~d~Dd~~lk~  452 (546)
T KOG3783|consen  375 LLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMS--KNELEKMRAELENPKIDDSDDEGLKY  452 (546)
T ss_pred             HHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCC--hhhHHHHHHHHhccCCCCchHHHHHH
Confidence            44431000000000                   0001122222222211111  11111221111111111233344556


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHH
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR  300 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  300 (394)
                      ..+|.++...|+...|..+|...++- ......++...+.+++.+|..+...|. ..++..++.+|-+..
T Consensus       453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            67899999999999999999988864 333334566778899999999999998 999999999987643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.05  E-value=0.0025  Score=32.59  Aligned_cols=31  Identities=32%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      .++..+|.+|...|++++|..+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4688999999999999999999999999753

...

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.15  Score=41.55  Aligned_cols=284  Identities=11%  Similarity=-0.009  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      .....+|..+...|+..+-.......-..+...   ..+..+.....+-..+. .-+....-+.++..+++...+..  .
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R  123 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R  123 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence            456788999999999887776666655544332   12333333333333332 23445566667777776654421  1


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .......-..+..+|...++|.+|+......+.-.++.  .+.+....+...-+..|....+..+|...+..|-......
T Consensus       124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai  201 (411)
T KOG1463|consen  124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI  201 (411)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence            11122334568899999999999999999988887775  2444555566666788889999999998888776554332


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                         -.+|...+..=..-|..+....+|.-|..+|-+|.+-+....  +++....++-.+-.+-...+..++--.++..-.
T Consensus       202 ---YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~  276 (411)
T KOG1463|consen  202 ---YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL  276 (411)
T ss_pred             ---ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence               122222233323346666677899999999999988665432  333444444444444455566665544443222


Q ss_pred             HHHHhhcCCCCCcchHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 016124          256 DIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  326 (394)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  326 (394)
                      .+.  .    ......+...++..+..  ..+|+.|+.-|..-+.        ++|-+..-+..|-......+
T Consensus       277 ~l~--y----~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~--------~D~ivr~Hl~~Lyd~lLEkn  335 (411)
T KOG1463|consen  277 ALK--Y----AGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA--------EDPIVRSHLQSLYDNLLEKN  335 (411)
T ss_pred             HHh--c----cCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh--------cChHHHHHHHHHHHHHHHHh
Confidence            211  1    12234566677777654  3455555555544332        33444444555555544443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.12  Score=41.32  Aligned_cols=152  Identities=20%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  225 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  225 (394)
                      ..-+.-....|++.+|...+..++....+.          ..+...++.+|...|+.+.|...+...-.-.       ..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~  200 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN----------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QD  200 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCccc----------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hh
Confidence            344556778999999999999999875432          3445779999999999999998876521110       00


Q ss_pred             cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124          226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  305 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  305 (394)
                      .....+.....++.......+....-.++ .        .+|+.......+|..+...|+.++|.+.+-..++..   .+
T Consensus       201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~  268 (304)
T COG3118         201 KAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD---RG  268 (304)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cc
Confidence            11111111112222222222222222221 1        357777888899999999999999998876655543   22


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCc
Q 016124          306 KDSLPVGEALDCLVSIQTRLGEDD  329 (394)
Q Consensus       306 ~~~~~~~~~~~~l~~~~~~~g~~~  329 (394)
                      -.+..   ....+-.++...|..+
T Consensus       269 ~~d~~---~Rk~lle~f~~~g~~D  289 (304)
T COG3118         269 FEDGE---ARKTLLELFEAFGPAD  289 (304)
T ss_pred             ccCcH---HHHHHHHHHHhcCCCC
Confidence            22222   3445566666667655

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.87  E-value=0.38  Score=44.57  Aligned_cols=231  Identities=16%  Similarity=0.080  Sum_probs=128.3

Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhH
Q 016124           27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  106 (394)
Q Consensus        27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  106 (394)
                      ...+++.+|+.-..+.++.        +|....+...-|.++.++|+.++|..+++.. ..       ..+..-.++..+
T Consensus        20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-------~~~~D~~tLq~l   83 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG-------LKGTDDLTLQFL   83 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc-------CCCCchHHHHHH
Confidence            4567888888877777664        3444445556678889999999999665532 22       122234567778


Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  186 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  186 (394)
                      -.+|..+|++++|..+|++++..+        |. -..+..+=.+|.+.+.|.+-.+.   ++++++.   . |..+...
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yyf  147 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYYF  147 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-CcccchH
Confidence            899999999999999999998752        32 33445555666776666654433   3333332   1 2222222


Q ss_pred             HHHHHHHHHHHHcCChHHHHH-HH-HHHHHHHHHhhCCC-C-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124          187 NMRIDLAELLHIVGRGQEGRE-LL-EECLLITEKYKGKE-H-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~-~~-~~a~~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  262 (394)
                        |..+..+.......++... .+ --|-...+...... . ...+... ..-.++..+|++++|.+.+..-+.  ..  
T Consensus       148 --WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~--  220 (932)
T KOG2053|consen  148 --WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EK--  220 (932)
T ss_pred             --HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hh--
Confidence              2233444444444444433 10 01111112222111 1 1112221 123456678999999998854433  11  


Q ss_pred             CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                        ..+........-...+...++|.+-.+...+.+.
T Consensus       221 --l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  221 --LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             --ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence              1222222223445566777888777666666655

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.72  E-value=0.06  Score=33.28  Aligned_cols=69  Identities=7%  Similarity=0.056  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      ...-|.-++...+.++|+..++++++..     .+.+....++-.+..+|...|+|.+.+.+..+=+++.+...
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4455666778999999999999999864     34567888899999999999999999999888787776643

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.69  E-value=0.43  Score=42.66  Aligned_cols=150  Identities=22%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHH------HHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124          105 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus       105 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      .++..+...|+|.+|.+.|.+.      ++++..          .-++..+.-+...|..++-..+.++-.+.....   
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---  703 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---  703 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence            4688888999999999988753      333211          124556777777787777777776665555442   


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                        ..|.      .-|..+...|+.++|+...      +-++++..+..    ......+..++..+.....+.-|.+.|+
T Consensus       704 --kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~  771 (1081)
T KOG1538|consen  704 --KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL  771 (1081)
T ss_pred             --CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence              1121      1355667788888887653      33444443321    1222334445555555555555655555


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      +.-+                ...+..++...++|.+|..+.++
T Consensus       772 k~gD----------------~ksiVqlHve~~~W~eAFalAe~  798 (1081)
T KOG1538|consen  772 KMGD----------------LKSLVQLHVETQRWDEAFALAEK  798 (1081)
T ss_pred             Hhcc----------------HHHHhhheeecccchHhHhhhhh
Confidence            4322                12344556667777777655543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.67  E-value=0.48  Score=43.09  Aligned_cols=187  Identities=13%  Similarity=0.054  Sum_probs=117.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      +...|..+++.+.+.-.            ......+|.+|..-     .+.+.|+.+++.+.....+..   +.....+.
T Consensus       227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~  291 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQ  291 (552)
T ss_pred             hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccc
Confidence            35677777777665321            22335566666543     588999999999987322111   01122356


Q ss_pred             HHHHHHHHHcc-----cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHHH
Q 016124          232 LNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       232 ~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~  303 (394)
                      ..+|.+|....     +...|..++.++...          ....+.+.+|.++..-.   +...|..+|..|..     
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-----  356 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-----  356 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence            78899988753     678899999888762          23457788999888765   56789999988866     


Q ss_pred             cCCCChhHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-cCchhhhhhH
Q 016124          304 FGKDSLPVGEALDCLVSIQTRL----GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLK  378 (394)
Q Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~  378 (394)
                        ..+.   .+...++.+|..-    -+.. .|..+++++.+.       ++|.   +...++..+..- +++..+...+
T Consensus       357 --~G~~---~A~~~la~~y~~G~gv~r~~~-~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~  420 (552)
T KOG1550|consen  357 --AGHI---LAIYRLALCYELGLGVERNLE-LAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALY  420 (552)
T ss_pred             --cCCh---HHHHHHHHHHHhCCCcCCCHH-HHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHH
Confidence              2333   4677888887653    2344 788888888763       2322   223333333322 7777777766


Q ss_pred             HHHHHHHHHHH
Q 016124          379 KRLSNLRMKYK  389 (394)
Q Consensus       379 ~~a~~~~~~~~  389 (394)
                      ....++.-+..
T Consensus       421 ~~~a~~g~~~~  431 (552)
T KOG1550|consen  421 LYLAELGYEVA  431 (552)
T ss_pred             HHHHHhhhhHH
Confidence            66665554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.55  E-value=0.07  Score=33.01  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      .-|.-++...+.++|+..++++++..     .+.++...++..+..+|...|+|.+++.+..+-+++.+..
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34555667888999999999998863     3456777888899999999999999999988888877654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK14707 hypothetical protein; Provisional

Probab=96.47  E-value=1.3  Score=45.61  Aligned_cols=298  Identities=9%  Similarity=-0.000  Sum_probs=159.3

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      ..++++.-..++|..+..+-.-+..+.......  +.....  -..+++++...++|.+...+-.-+..+...+.  +++
T Consensus       835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~  910 (2710)
T PRK14707        835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEP  910 (2710)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCH
Confidence            356677777777777766666666555444222  222222  23467778888888888887777777776654  233


Q ss_pred             chHh--hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           98 DLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        98 ~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      ....  .-..++.++-...++.++..+-.-+..+...+.  .++....+  -..++.++...++|.+...+-.-+..+..
T Consensus       911 ~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~  988 (2710)
T PRK14707        911 ELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAE  988 (2710)
T ss_pred             HHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            3322  233466777777777776665555555555543  22333222  34577777888888776666555555544


Q ss_pred             hcccCCCchHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHHHcccHHHHHHH
Q 016124          174 DSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       174 ~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~  250 (394)
                      ..   ..+... ....-..+++++....++.++-.+-.-+..+.....  ..+.....  -..++.++....++.+...+
T Consensus       989 rL---~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707        989 RL---VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred             HH---hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence            32   111110 011114567777777788766555555555555543  22222221  22455666666666554444


Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124          251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  328 (394)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  328 (394)
                      -.-+..+.........-.....-..+++++...-+|.+.-.+-.-++.+...+....++........++.+.-...++
T Consensus      1064 r~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707       1064 LAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred             HHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence            443333333321111101111224567777777788777767666676666654433333333333444444444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.45  E-value=0.011  Score=30.89  Aligned_cols=35  Identities=17%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG   51 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   51 (394)
                      .++..||.+-...++|++|+.-|++++++.++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999877654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.43  E-value=0.016  Score=30.25  Aligned_cols=36  Identities=19%  Similarity=-0.065  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999999887643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.36  Score=38.71  Aligned_cols=126  Identities=19%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       105 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      .-+.-....|++.+|...+..++..        .+....+...++.+|...|+.+.|...+...-.-..      .+...
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------~~~~~  204 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------DKAAH  204 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------hhHHH
Confidence            3455677889999999999999987        333456778899999999999999988876322111      01111


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ......   ..+.......+....-.++ .        .+|+.......++..+...|+.++|.+.+-..+.
T Consensus       205 ~l~a~i---~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         205 GLQAQI---ELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHH---HHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            111112   2222222322222221111 1        3677778888999999999999999988765554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.32  E-value=0.014  Score=49.49  Aligned_cols=94  Identities=15%  Similarity=0.052  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      .-+...+..+.|+.|+..|.+|+++        +|..+..+.+.+..+.+.+++..|+.-+.++++.        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            3466677888999999999999987        5667777888889999999999999999999986        58888


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      .+|...|..+...+++.+|...|+....+.
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~  102 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA  102 (476)
T ss_pred             heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence            899999999999999999999999887753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.31  E-value=0.76  Score=41.21  Aligned_cols=114  Identities=20%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             HHHHHHhCcHHHHHHHH------HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          107 GSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      +.++...|+.++|+...      +-++++..++    +......+..++..+.....+.-|.+.|.+.-+.         
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------  776 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------  776 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence            45566667777766543      3344444332    1222233444555555555555565555553221         


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                               ..+...+...+++++|..+.++            +|. ...++...|..+....++++|.+.|.++
T Consensus       777 ---------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  777 ---------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             ---------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence                     2234556677888888766543            222 2234555666667777777777766554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.28  E-value=0.0035  Score=31.75  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                      ++++.+|.++...|++++|...|+++++..|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3678999999999999999999999987654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.24  E-value=0.3  Score=35.73  Aligned_cols=148  Identities=14%  Similarity=0.160  Sum_probs=95.6

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  186 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  186 (394)
                      |.-|+..+.-+++-+.|..++++.                       ..+..++|+..|...-+.      .....|.+ 
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvL-   95 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVL-   95 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHH-
Confidence            445566666666666666666543                       345667777766654432      12233443 


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                       +....+.+....|+...|+..|.++-...      ..|...  .+...-+.++...|.|++-....+       ...++
T Consensus        96 -A~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d  161 (221)
T COG4649          96 -ARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGD  161 (221)
T ss_pred             -HHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCC
Confidence             34668888889999999999988764321      233332  233344667778888776554433       33345


Q ss_pred             CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .+|....+...||..-.+.|++.+|..+|.+...
T Consensus       162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            6777777888899999999999999999987655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.23  E-value=0.62  Score=39.63  Aligned_cols=154  Identities=15%  Similarity=0.116  Sum_probs=105.3

Q ss_pred             CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCC---------------------chHHHHHHHHHHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------------------TSILLVTSLLGMAKVL   68 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~l~~~~   68 (394)
                      ..+|....++..++.++..+|++..|.++.++|+-.+++.+.+                     .......+++......
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            4677788899999999999999999999999999877643211                     1123455667777888


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  148 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  148 (394)
                      .+.|-+..|.++.+-.+.+     .+.. +-..++..+-....+.++++--++.++.......+.   .........+.+
T Consensus       114 ~~RG~~rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~  184 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI  184 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence            8999999999999888776     2221 223344555566667788877777666554421110   000112344566


Q ss_pred             HHHHHHCCCH---------------HHHHHHHHHHHHHH
Q 016124          149 AHAKCANGNA---------------EEAVELYKKALRVI  172 (394)
Q Consensus       149 a~~~~~~g~~---------------~~A~~~~~~a~~~~  172 (394)
                      +.++...++-               ++|...+.+|+..+
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            7777777777               88999999998865

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.23  E-value=0.012  Score=29.72  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVL   46 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   46 (394)
                      ++++.+|.++...|++++|+..|++.++..
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            367899999999999999999999998753

>PRK14707 hypothetical protein; Provisional

Probab=96.17  E-value=1.9  Score=44.54  Aligned_cols=336  Identities=11%  Similarity=0.016  Sum_probs=176.2

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ++.++-...++.+...+-.-+..+..++.  ..+.....  -..+++++...++|.++..+-..+..+......  .+..
T Consensus       795 vAn~LNALSKWPe~~~Cr~AA~~LA~rLa--~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~L  870 (2710)
T PRK14707        795 MTNALNALSKWPDTPACAAAASALAARVA--DDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPEL  870 (2710)
T ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHh--cChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--Chhh
Confidence            33444444445444444444444444332  12322222  234677788888888887777777776665432  2222


Q ss_pred             Hhh--hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124          100 VLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus       100 ~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      ...  -..++.++-..+++.+...+-.-+..+...+.  +++.....  -..++.++....+|.++-.+-.-+..+....
T Consensus       871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rL  948 (2710)
T PRK14707        871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERL  948 (2710)
T ss_pred             hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHh
Confidence            222  23467777777888877777777777766653  23333333  3567777777788777655555444444442


Q ss_pred             ccCCCchHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHHHcccHHHHHHHHH
Q 016124          176 NYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       176 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~  252 (394)
                         ..++.. -...-..++.++...+++.+.-.+-.-+..+.....  +++.....  -..++.++....++.++-.+-.
T Consensus       949 ---a~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~ 1023 (2710)
T PRK14707        949 ---SDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAA 1023 (2710)
T ss_pred             ---ccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHH
Confidence               111111 011114567778888888776666555555554432  11211111  2245666666667765555555


Q ss_pred             HHHHHHHhhcCCCCCcchH--HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH--HHHHHHHHHHHHHhCCC
Q 016124          253 ICLDIMTKTVGPDDQSISF--PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV--GEALDCLVSIQTRLGED  328 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~  328 (394)
                      -+..+...+.+  .+....  .-..++.++....+|.+.-.+-.-+..+...+.  +++..  +..-..++.++-...++
T Consensus      1024 AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707       1024 TVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLS--DDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred             HHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcC
Confidence            55555544422  222211  224577778788888765555544444444332  22221  11223456666666666


Q ss_pred             chHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124          329 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  373 (394)
Q Consensus       329 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  373 (394)
                      . +.-.+-+.++.+...+-...++........++.++....++..
T Consensus      1100 P-~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707       1100 P-DSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred             C-CcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence            6 5555556666666665444444333334445555555555544

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.84  Score=39.94  Aligned_cols=251  Identities=14%  Similarity=0.048  Sum_probs=139.5

Q ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      .+...+..+.  ....+++...+...    |..+.....-+.++...|+.+.|+..++.+++..        -......+
T Consensus       240 ~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--------~kQ~~~l~  305 (546)
T KOG3783|consen  240 FVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--------MKQVKSLM  305 (546)
T ss_pred             HHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--------HHHHHHHH
Confidence            3344444444  33344444433332    2333345566788888888888888888877621        12333456


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHHHh
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--------RSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      +..+|.++..+.+|..|...+....+..       +...+..-+..|-++.        ..|+-++|-.+++........
T Consensus       306 ~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~  378 (546)
T KOG3783|consen  306 VFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLAN  378 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            6788999999999999998888766542       1122211122223332        234556666555555443332


Q ss_pred             hcCCCCCcchH----------------------HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 016124          261 TVGPDDQSISF----------------------PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL  318 (394)
Q Consensus       261 ~~~~~~~~~~~----------------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  318 (394)
                      . |.+.|....                      -+..++.++.  |=..-+..-..++........-.+..+..--+..+
T Consensus       379 a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn--gf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~  455 (546)
T KOG3783|consen  379 A-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN--GFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLK  455 (546)
T ss_pred             c-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh--hcccCChhhHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            1 111111111                      1122222222  11111111111211111111111223334445668


Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC-chhhhhhHHHHHHHH
Q 016124          319 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR-KEEKFPLKKRLSNLR  385 (394)
Q Consensus       319 ~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  385 (394)
                      |.++..+|+.. .|..+|..+++-. .....++--.+.+++.+|.++..+|. ..++..++.+|.+-.
T Consensus       456 g~~lR~Lg~~~-~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  456 GVILRNLGDSE-VAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHcCCHH-HHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            99999999888 9999999888652 22234445567889999999999999 999999999998765

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.05  E-value=0.3  Score=35.43  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Q 016124          184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  263 (394)
Q Consensus       184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  263 (394)
                      .+...+..+..+-...++.+++..++....-+        .|.....-..-|.++...|++.+|+.+++....       
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-------   72 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-------   72 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------
Confidence            34556677777888888999988887644332        466667777789999999999999999998654       


Q ss_pred             CCCCcchHHHHHHHHHHHhhcChH
Q 016124          264 PDDQSISFPMLHLGITLYHLNRDK  287 (394)
Q Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~  287 (394)
                       ..+....+--.++.|+..+|+.+
T Consensus        73 -~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 -RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             -cCCCChHHHHHHHHHHHHcCChH
Confidence             45666666677888888888864

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.04  E-value=0.81  Score=38.96  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=102.5

Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------------ccCCCchHHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI  198 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~  198 (394)
                      +|....++..++.++..+|++..|.+++++|+-.++..                   .+..+++.....++......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            56677889999999999999999999999998766532                   01112234445566777888899


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124          199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  278 (394)
Q Consensus       199 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  278 (394)
                      .|-+..|.++.+-.+.+.    ...+|  ..++..+=....+.++++--++.++.......+.   .........+..+.
T Consensus       116 RG~~rTAlE~~KlLlsLd----p~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aL  186 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLD----PDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIAL  186 (360)
T ss_pred             cCcHHHHHHHHHHHHhcC----CCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHH
Confidence            999999999998877652    11133  2334444455566777776666666544311000   00012234466777


Q ss_pred             HHHhhcCh---------------HHHHHHHHHHHHHH
Q 016124          279 TLYHLNRD---------------KEAEKLVLEALYIR  300 (394)
Q Consensus       279 ~~~~~g~~---------------~~A~~~~~~a~~~~  300 (394)
                      ++...++-               ++|...+.+|+..+
T Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            88888887               89999999998765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.90  E-value=0.49  Score=35.79  Aligned_cols=99  Identities=22%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      +.....+..+|....       .++.+-.-++|...|-++       -|....+.+.....||..|.+. +.+ +++.++
T Consensus       100 L~~~tk~S~dP~llY-------y~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~kr-D~~-Kt~~ll  163 (203)
T PF11207_consen  100 LQEETKNSQDPYLLY-------YHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYTKR-DPE-KTIQLL  163 (203)
T ss_pred             HHHHHccCCCccHHH-------HHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHHcc-CHH-HHHHHH
Confidence            333444455665432       233332335565555433       2344456677788899888754 466 999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                      -+++++...    ++.-..+++..|+.++..+|+++.|-
T Consensus       164 ~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  164 LRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            999987543    32334677888999999999999874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.75  E-value=0.019  Score=48.79  Aligned_cols=94  Identities=10%  Similarity=0.062  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      -.-+..++..+.|+.|+..|.+++++        +|..+..+.+.+..+...+++..|+.-+.++++.        +|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34577788889999999999999997        3455556667778889999999999999999886        5888


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..+|..-|..+...+++.+|...|+....+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999988765

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.73  E-value=0.0052  Score=49.57  Aligned_cols=91  Identities=21%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      +.-....|.+++|++.|..++.+        +|..+..+...+.++..+++...|+.-+..++.+        +++.+.-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~  184 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG  184 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence            44456778999999999999886        6778888999999999999999999999999987        5666667


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      +-..+.....+|++++|...+..+.++
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            777888889999999999999999875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.68  E-value=0.86  Score=36.53  Aligned_cols=188  Identities=14%  Similarity=0.047  Sum_probs=109.6

Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC---c-------hHHHHHHHHHHHHHHHCC--------------CH
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---D-------GRVGMAMCSLAHAKCANG--------------NA  158 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~  158 (394)
                      .+.+..+++..|+..+|+.-+++=+..+....++.   .       ...+.-+..+|.+.....              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            34567889999999999999999888887765541   1       112333445555544332              12


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCc-------------------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124          159 EEAVELYKKALRVIKDSNYMSLD-------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       159 ~~A~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ..|-.+...--+...... ..|+                   ++.....+................++++.+|+..+...
T Consensus        93 ~~AA~~~~~Rr~~a~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~  171 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIP-PDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY  171 (247)
T ss_pred             HHHHHHHHHHHHHHHhcc-CCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence            233333322222222210 0011                   00000000000100111223456678888888887765


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      .  ...........+|..|...|++++|..+|+.+...+++-  +-..-...++..+..|+...|+.+..+.+.-+
T Consensus       172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4  234455566789999999999999999999997766543  23344556677888899999998877665544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.60  E-value=0.32  Score=32.67  Aligned_cols=102  Identities=20%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh----CcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      .+.-++..|++-+|+++.+..+....     ++......+..-|.++..+    .+.+-=..++.-+++-+.+... -.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence            35677889999999999999887632     2222234555567666554    3333333444444444433211 145


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ..+..++.+|.-+.....|+++..-.++++.+
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            55667777776665555566666666665543

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=1.2  Score=37.73  Aligned_cols=195  Identities=17%  Similarity=0.139  Sum_probs=133.0

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      +-.......+..+.++....++..|...+.+..-.+.+  +........++..++.++.+.+..-.+..+.-.++....+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            33444566777889999999999999999888765443  2234456677888888888888888888888887776655


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-----HHHHHHHHHHHHHHcccHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-----FVTHLLNLAASYSRSKNFVEAER  249 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~  249 (394)
                      -   . .+...+..-.+++......|-.+.|...+..++....-.+|-+...     .+.++..-+.. ....+.+.+..
T Consensus       346 y---~-ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~  420 (482)
T KOG4322|consen  346 Y---S-LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPR  420 (482)
T ss_pred             h---c-cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHH
Confidence            2   2 2222344447788899999999999999999988765444322211     01111111111 15567788888


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHH---HHHHHHHHHH
Q 016124          250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY  298 (394)
Q Consensus       250 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~  298 (394)
                      +++++-+++.+.  ..+..+..+.+-++..|-..|+.++   +...|+++..
T Consensus       421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            888888887776  4556677888889999999998654   4445555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.39  E-value=0.41  Score=32.12  Aligned_cols=100  Identities=13%  Similarity=-0.024  Sum_probs=54.5

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG----RAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .+.-++..|++-+|++..+..+....+     +......+..-|.++..++    +.+-=..++.-+++-+.+... -.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence            467788999999999999998876422     2222244555666665543    333333444444444433221 134


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRIL  127 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  127 (394)
                      ..+..++.+|.-+...-.|+++..-.++++
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGL  105 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            445555555554444444444444444444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.38  E-value=1.4  Score=36.98  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=90.0

Q ss_pred             CCccHHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          223 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                      .+|....++..+....-..-.            .+.-+.++++|++       . +|.....+..+-.+.....+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-------~-np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-------H-NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            456666666666554433322            2344455555555       2 4555555555555666666777777


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC----------CHHHHHHHHH
Q 016124          291 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK  360 (394)
Q Consensus       291 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~  360 (394)
                      +-+++++...     ++.+..-..+...-......-.+. .....|.+++..........          ......+...
T Consensus        86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            7777776642     333433333322222222233455 78888888887766554332          2345667778


Q ss_pred             HHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          361 VVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       361 la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      +.......|..+.|...++-.+++.
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888999999999999999988764

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.30  E-value=0.79  Score=33.64  Aligned_cols=124  Identities=12%  Similarity=-0.071  Sum_probs=83.6

Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHH--HH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL--DC  317 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~  317 (394)
                      ..+..++|+.-|...-+    ..-...|  .-+....+.+....|+...|+..|.++-..      ...|....-+  ..
T Consensus        70 ~~~k~d~Alaaf~~lek----tg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlr  137 (221)
T COG4649          70 QENKTDDALAAFTDLEK----TGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLR  137 (221)
T ss_pred             HcCCchHHHHHHHHHHh----cCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHH
Confidence            34666777777765433    1111122  345577899999999999999999886542      1234433222  23


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          318 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       318 l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      -+.++...|.++        ......+.+.++.+|-...+...||..-.+.|++..|..+|.+...
T Consensus       138 aa~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            344555566554        4444455556778888888999999999999999999999998764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.29  E-value=0.48  Score=34.39  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      ...+..+..+..+-...++.+++..++....-+        .|.....-..-|.++...|++.+|+..++....      
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------   72 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------   72 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence            345666777777778888999998887755444        566677777889999999999999999998643      


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAE  159 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~  159 (394)
                        ..+....+--.++.|+...|+++
T Consensus        73 --~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 --RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --cCCCChHHHHHHHHHHHHcCChH
Confidence              23444445566788888888754

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.18  E-value=0.081  Score=46.31  Aligned_cols=95  Identities=20%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      +.-|..|...|+...|+.++..|+.....       .....+.+++.+....|-.-+|-.++.+++.+.        ...
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~se  675 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSE  675 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccC
Confidence            44566777899999999999999875321       223346788999999999999999999999884        122


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .-..+.+|.++..+.+.+.|++.+++|++.
T Consensus       676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  676 PLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             chHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            345678899999999999999999999986

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.14  E-value=1  Score=34.11  Aligned_cols=78  Identities=21%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 016124          243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ  322 (394)
Q Consensus       243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (394)
                      .-++|...|-++-       +......+.....||..|. ..+.++|+.++.++++...    +++......+..|+.++
T Consensus       121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~  188 (203)
T PF11207_consen  121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY  188 (203)
T ss_pred             CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence            3355665554432       2344566778888887776 6688999999999998763    23233456788999999


Q ss_pred             HHhCCCchHHH
Q 016124          323 TRLGEDDTKLL  333 (394)
Q Consensus       323 ~~~g~~~~~A~  333 (394)
                      .+.|+++ .|-
T Consensus       189 ~~~~~~e-~AY  198 (203)
T PF11207_consen  189 QKLKNYE-QAY  198 (203)
T ss_pred             HHhcchh-hhh
Confidence            9999988 653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.99  E-value=0.33  Score=27.73  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .+++.+|..+.+.|+|++|..+.+.++++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            357889999999999999999999999865

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.92  E-value=0.036  Score=31.60  Aligned_cols=37  Identities=19%  Similarity=0.024  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhh
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  392 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  392 (394)
                      +.++.+|..+.+.|+|++|..+.+.++++.|...|..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4678899999999999999999999999998877653

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=1.7  Score=35.47  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  262 (394)
                      .....++.+.|..|.+.|+-+.|.+.+.+..+-....+  ...++..+...+|..|....-..+.++   ++-.+.++- 
T Consensus       101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~lV~~~ie---kak~liE~G-  174 (393)
T KOG0687|consen  101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDLVTESIE---KAKSLIEEG-  174 (393)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHHHHHHHH---HHHHHHHhC-
Confidence            44567778999999999999999999998776543332  334566667778888866544444333   333333322 


Q ss_pred             CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                       .+....-+.-..-|.......++.+|..+|-.++..+
T Consensus       175 -gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  175 -GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             -CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence             2222122222334666677788999988888877654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=3  Score=37.59  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      ++.+-|.-.++..+|..++++|...+......  ..+...+.....+..||....+.+.|.+++++|-+.        +|
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d~  425 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------DR  425 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------cc
Confidence            34555667788899999999999988765432  123356788899999999999999999999998765        33


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  131 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  131 (394)
                      ...-....+..+....|.-++|+...........
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            4444455556667778888899888877665543

>smart00028 TPR Tetratricopeptide repeats

Probab=94.75  E-value=0.052  Score=26.72  Aligned_cols=29  Identities=21%  Similarity=0.629  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINV   45 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~   45 (394)
                      .++..+|.++...|++++|+..+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45788999999999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.72  E-value=1  Score=32.20  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      ...+..+...-...++.+++..++...--+        .|.....-..-|.++...|++.+|+..++...+        +
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~   73 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------S   73 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence            344455566666688999988877644322        455556666789999999999999999988755        2


Q ss_pred             CCcchHHHHHHHHHHHhhcChH
Q 016124          266 DQSISFPMLHLGITLYHLNRDK  287 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~  287 (394)
                      .+....+.-.++.|+..+|+.+
T Consensus        74 ~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        74 AGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CCCchHHHHHHHHHHHhcCChH
Confidence            3333445556778888888753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.71  E-value=0.36  Score=40.43  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh--
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN--   91 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   91 (394)
                      .+..++..+|..|...|+++.|+..|.++-+.+..     ....+..+.++..+-...|+|..-..+..+|.......  
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~  222 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN  222 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence            34567889999999999999999999998777643     34677788888899999999999888888876652110  


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  127 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  127 (394)
                      ....-+....+.  -|.+....++|..|..+|-.+.
T Consensus       223 ~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  223 LAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence            001122223333  3445555668999888886653

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.69  E-value=0.011  Score=47.78  Aligned_cols=93  Identities=14%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  100 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  100 (394)
                      .-+.-.+..|.+++|+..|..++.+        .|..+..+...+.++...++...|+.-+..++.+        +++.+
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa  182 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSA  182 (377)
T ss_pred             HHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccc
Confidence            3455567789999999999999876        3556777888899999999999999999999887        56777


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .-+-..|.....+|++.+|...+..+.++
T Consensus       183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  183 KGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            77888889999999999999999998875

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.61  E-value=0.06  Score=25.40  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHH
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356789999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.59  E-value=2.4  Score=35.62  Aligned_cols=147  Identities=13%  Similarity=0.084  Sum_probs=91.9

Q ss_pred             CcchHhhhHhHHHHHHHhCc------------HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      +|....++..+....-..-.            .+.-+..+++|++.     .+++......   +-.......+.++...
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~~L~l~---~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSERLLLG---YLEEGEKVWDSEKLAK   86 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhCCHHHHHH
Confidence            45555555555544333222            33445566666654     2334443333   3334456667777777


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------CccHHHHHHH
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN  233 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~  233 (394)
                      -+++++..       .+..+.+...|...-......-.++.....|.+++..........          ......++..
T Consensus        87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            78887774       345556565555554444555678899999999988776554322          1234556677


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHH
Q 016124          234 LAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       234 la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      +.......|..+.|+..++-.+++
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHH
Confidence            888889999999999999998885

>smart00028 TPR Tetratricopeptide repeats

Probab=94.58  E-value=0.061  Score=26.46  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=25.8

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .++..+|.++...|++++|...+++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35778999999999999999999998865

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.57  E-value=1.9  Score=34.28  Aligned_cols=185  Identities=16%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      +..++.+....|+|++...+.++++...       ......=.+.++.+|-. .|....+...+.......+   +..++
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~   73 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE   73 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence            4567889999999999999999988761       11222223334444422 2333333333332222111   11111


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC-CchHHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL  208 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  208 (394)
                      .....    ..-|. ..=-++=...+..++.+......+. .+.......+-..|..|.-.     |     -.++|...
T Consensus        74 ~~~~~----i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   74 KQVKL----IKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            11111    11110 0001233344555555554431111 12223333333445554432     1     13679999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHh
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      |++|+.+.....++.+|.......+.+..| .-.|+.++|+...+++++-...
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999988888998887777777766 4589999999999988875443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.55  E-value=2.3  Score=35.21  Aligned_cols=166  Identities=17%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      ...+++..+...+..+-..       ..+   .....++.+|...    .+..+|..+|+.+.+          ......
T Consensus        52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a  111 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA  111 (292)
T ss_pred             cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence            3556777777777766541       111   4555666666543    357778888885433          234567


Q ss_pred             hHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 016124          103 LFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-------NAEEAVELYKKALRV  171 (394)
Q Consensus       103 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~  171 (394)
                      .+.||.+|..    ..+..+|..+|.++...       .++.-..+...++.+|..-+       +...|...|.++...
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            7789998887    45899999999999875       22222344677777776642       223677777777664


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  242 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  242 (394)
                      .            ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       185 ~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         185 G------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             c------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            2            13344678877754    34789999999998763       12   55667777 555555

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.47  E-value=0.15  Score=35.34  Aligned_cols=76  Identities=13%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES-EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ...+.+++++++....+.+     ..++-+.+.+.++...+ ....+.++.|+..+.+.++|++++.+....++..++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3456788999988877655     24455555555554233 35567888999999999999999999998888876666


Q ss_pred             Hh
Q 016124          390 QK  391 (394)
Q Consensus       390 ~~  391 (394)
                      |.
T Consensus       106 Qa  107 (149)
T KOG3364|consen  106 QA  107 (149)
T ss_pred             HH
Confidence            54

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.46  E-value=0.044  Score=25.86  Aligned_cols=24  Identities=21%  Similarity=0.134  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhcCchhhhhhHHH
Q 016124          357 TLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                      +...+|.++...|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.27  E-value=1.1  Score=30.56  Aligned_cols=74  Identities=12%  Similarity=-0.006  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH-------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      +..+|......+++-.++-.|++|+.+.++.......+.       ..+..+||..+...|+.+ -.+.+++-|-+....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~-yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD-YELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            457888889999999999999999999888742222211       345678999999999998 889998888765554


Q ss_pred             hc
Q 016124          346 EF  347 (394)
Q Consensus       346 ~~  347 (394)
                      +.
T Consensus        83 Li   84 (140)
T PF10952_consen   83 LI   84 (140)
T ss_pred             hc
Confidence            43

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.16  E-value=2.4  Score=33.98  Aligned_cols=91  Identities=12%  Similarity=0.049  Sum_probs=69.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124          115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  194 (394)
Q Consensus       115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~  194 (394)
                      .....++++.+|+..+....  ...........+|..|...|++++|..+++.+...+++.    .-......++..+..
T Consensus       153 hs~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~  226 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLE  226 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHH
Confidence            34456788888888877642  233445566789999999999999999999998877652    334556677788999


Q ss_pred             HHHHcCChHHHHHHHHH
Q 016124          195 LLHIVGRGQEGRELLEE  211 (394)
Q Consensus       195 ~~~~~g~~~~A~~~~~~  211 (394)
                      ++...|+.+..+.+.-+
T Consensus       227 Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  227 CAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHhCCHHHHHHHHHH
Confidence            99999998887766544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.15  E-value=2.8  Score=34.67  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=107.5

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh----CcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        68 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                      ....+++..+...+..+-..       ..   ......++.+|...    .+..+|..+|..+.+          .....
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~  110 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE  110 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence            34556777777777776542       11   14566677776653    457778888874433          22344


Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 016124          144 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC  212 (394)
Q Consensus       144 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a  212 (394)
                      +.+.+|.+|..    ..++.+|..+|.++.+.-       ..+.  ..+...++..|..-.       +...|..+|.++
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            67778988877    458999999999998742       1111  223466777666542       223677777766


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  284 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  284 (394)
                      -...          ...+...+|.+|..    ..++.+|..+|.++.+.       .+   ....+.++ ++...|
T Consensus       182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            5431          34567788888755    34889999999999872       22   56677788 666655

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.14  E-value=0.22  Score=42.47  Aligned_cols=137  Identities=13%  Similarity=0.004  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhC----CC--CccHHHHHH----HHHHHHHHcccHHHHHHHHHHH
Q 016124          186 ENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKG----KE--HPSFVTHLL----NLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       186 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~----~~--~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a  254 (394)
                      ..++..+|..+... .+.-.|..++.++++.......    ..  .|..+.-+.    +...+-.-.++.++   .--++
T Consensus       245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa  321 (615)
T KOG0508|consen  245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA  321 (615)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence            33444555555433 3466788888888877654110    01  111111111    11111112222221   22356


Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124          255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  325 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (394)
                      +-+.++++|+.||++.......|-+|...|+++.-++++.-|+.+.++.+.|-.|.+..++...+.++...
T Consensus       322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m  392 (615)
T KOG0508|consen  322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM  392 (615)
T ss_pred             HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence            67778899999999888777889999999999999999999999999999999999998888888876543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.13  E-value=0.99  Score=29.38  Aligned_cols=72  Identities=21%  Similarity=0.131  Sum_probs=45.2

Q ss_pred             CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      +|....+.+.+|..+...|++++|++.+-.++...        +..               +.+ .|.+.+-..+++   
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--------r~~---------------~~~-~ar~~ll~~f~~---   70 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD--------RDY---------------EDD-AARKRLLDIFEL---   70 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTC---------------CCC-HHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccc---------------ccc-HHHHHHHHHHHH---
Confidence            56777889999999999999999998887776532        111               222 555544444433   


Q ss_pred             hcCCCCHHHHHHHHHHHHHH
Q 016124          346 EFGSESEEVMLTLKKVVSYL  365 (394)
Q Consensus       346 ~~~~~~~~~~~~~~~la~~~  365 (394)
                       +|+.+|.+......|+.++
T Consensus        71 -lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   71 -LGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             -H-TT-HHHHHHHHHHHHHH
T ss_pred             -cCCCChHHHHHHHHHHHHh
Confidence             4666777777777776654

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=2.5  Score=33.96  Aligned_cols=134  Identities=18%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      .-++-++-+.+.++-.+..    ........++.++|..|...++.+.+.+++.+.+.-.....  -..++..+...+|.
T Consensus        90 kneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~  163 (412)
T COG5187          90 KNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGL  163 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHH
Confidence            3445556666666554432    12344567889999999999999999999998877544332  23455566677888


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124          237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  301 (394)
Q Consensus       237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  301 (394)
                      +|..+.-.++.++.....++   +  |.+....-+.-...|.......++.+|..++-..+..+.
T Consensus       164 ~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         164 IYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             hhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            88766656665555554444   2  222222222223446666777888888888877766543

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.03  E-value=3.9  Score=35.85  Aligned_cols=178  Identities=16%  Similarity=0.037  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLIT  216 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~  216 (394)
                      ....+|+.++..|+|+-|...|+.+.+-+..    +......+.+....|.+....+..       +....+++.|+..+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y  285 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY  285 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence            4678999999999999999999998886643    123444556666666666666643       47778888888877


Q ss_pred             HHhhCC---CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHH--HhhcChHH
Q 016124          217 EKYKGK---EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITL--YHLNRDKE  288 (394)
Q Consensus       217 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~  288 (394)
                      .....+   .......+....+.++...|.+.+|...+-+.....-    .....   .+..+-.+|.++  ........
T Consensus       286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~~  361 (414)
T PF12739_consen  286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPSP  361 (414)
T ss_pred             HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCCc
Confidence            663211   1224555667778888888998888777666554311    00111   223333444444  11000000


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          289 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       289 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      -..               .....+.-+..-|.-|.+.|+.. .|..+|.+++.++..
T Consensus       362 ~~~---------------r~RK~af~~vLAg~~~~~~~~~~-~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  362 GLT---------------RFRKYAFHMVLAGHRYSKAGQKK-HALRCYKQALQVYEG  402 (414)
T ss_pred             cch---------------hhHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhCC
Confidence            000               01122223334567889999999 999999999988763

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.97  E-value=0.2  Score=44.09  Aligned_cols=94  Identities=23%  Similarity=0.371  Sum_probs=74.4

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                      -|..+...|+...|+.++..|+...       .......+.+|+.+..+.|-..+|-.++.+++.+.-     ..|   .
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l  677 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---L  677 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---h
Confidence            3555667899999999999988652       222334577899999999999999999999998741     123   3


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ....+|.++..+.+.+.|++.+++|++..
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence            46678999999999999999999999853

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=3.7  Score=35.08  Aligned_cols=195  Identities=14%  Similarity=0.063  Sum_probs=132.0

Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                      +-..........+.++....++..|...+.+..-.+..    +........++..++.++.+.+..-.+..+.-.++...
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~  343 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR  343 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            34445566677899999999999999999988765543    34455667777888888888888778888777777665


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHHHhhcChHHHHH
Q 016124          217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      .+..  .+...+..-..++..+...|.++.|...+..++....-..|-+...     .+.++..-+..+ ...+.+.+..
T Consensus       344 sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~  420 (482)
T KOG4322|consen  344 SEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR  420 (482)
T ss_pred             HHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence            5442  1222344455788888999999999999999988654433322111     111111112112 4567788888


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Q 016124          292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD--TKLLELLKRVL  340 (394)
Q Consensus       292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~A~~~~~~al  340 (394)
                      +++++-.++.+.  .-|..+..+.+.++..|-..|+.+  +++...|+++.
T Consensus       421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~  469 (482)
T KOG4322|consen  421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW  469 (482)
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            888888887765  456667888889999999999865  13444455544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.63  E-value=1.9  Score=36.43  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=74.4

Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ....++..+|.-|...|+++.|++.|.++.+.+..     ...+...+.++-.+-...|+|..-..+..+|.........
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~  222 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN  222 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence            34567889999999999999999999998887654     4566777888888888999999988888888765210000


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                      ....-+....+.  -|.+....++|..|..++-.+
T Consensus       223 ~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  223 LAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence            001111112333  344555566888888877554

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=3.5  Score=33.84  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC
Q 016124           35 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  114 (394)
Q Consensus        35 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  114 (394)
                      -++-+.+.++-.++..|  .....+++.+.+..|++.|+-+.|.+.+.+..+-.-...  ...+..-....+|..|....
T Consensus        83 ki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~  158 (393)
T KOG0687|consen   83 KIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHD  158 (393)
T ss_pred             HHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHH
Confidence            34445555555444433  246778899999999999999999999988765433322  23344555666777765543


Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      -..   +..+++-.+.++  |.+....-+.-..-|.......+|.+|-.+|-.++..+..
T Consensus       159 lV~---~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  159 LVT---ESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHH---HHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            333   333344444443  2232222222333455666778899999999888876543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.56  E-value=2.5  Score=35.99  Aligned_cols=104  Identities=10%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch------HH----HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      -..=|...+++++|..|..-|..+++++.+......      .+    ...+...+..||...++.+-|+....+.+.+ 
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-  257 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-  257 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-
Confidence            344566778899999999999999999876422111      11    2223456889999999999999998888765 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                             +|....-+..-+.++..+.+|.+|-.-+--+.-++
T Consensus       258 -------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 -------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             -------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   56666677778999999999999987776665544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.33  E-value=2.1  Score=30.63  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      ....+..+...-...++.+++..++....-+        .|.....-..-|.++...|++.+|+..++...+-       
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------   73 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------   73 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence            3444555555555688888888877654433        4566667777899999999999999999887642       


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAE  159 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~  159 (394)
                       .+......-.++.|+..+|+.+
T Consensus        74 -~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        74 -AGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             -CCCchHHHHHHHHHHHhcCChH
Confidence             2222334455677777777753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.29  E-value=3.4  Score=32.83  Aligned_cols=185  Identities=13%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-ANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      +..++.+....|+|++...+.++++...       ......-.+.++.+|- ..|....+...+.......+..    +.
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~   72 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GN   72 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----ch
Confidence            4567888999999999999999998761       1111122233333332 1233334444443333322211    11


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--Ccc-HHHHHHHHHHHHHHc-----c-----cHHHHH
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPS-FVTHLLNLAASYSRS-----K-----NFVEAE  248 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~la~~~~~~-----g-----~~~~A~  248 (394)
                      ......+....-.+      -++=...+..++.+.....-+.  .+. .+..+-..|..|.-.     |     -.+.|.
T Consensus        73 ~~~~~~i~~yk~ki------e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~  146 (236)
T PF00244_consen   73 EKQVKLIKDYKKKI------EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL  146 (236)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence            11111100001111      1222334444555444432111  111 111222234443321     2     247899


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH-hhcChHHHHHHHHHHHHHHHHHc
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      ..|++|+.+....+++.+|.......+.+..|. ..|+.++|....+++++.....+
T Consensus       147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l  203 (236)
T PF00244_consen  147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL  203 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred             HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence            999999999999888999988888888887764 48999999999999988765443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.20  E-value=2.2  Score=34.54  Aligned_cols=77  Identities=17%  Similarity=0.064  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                      ...++..++..+...|+++.+.+.+++.+.        .+|..-..+..+-..|...|+...|+..|++.-.....-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            456778899999999999999999998887        467777888999999999999999999999998876666665


Q ss_pred             CChhH
Q 016124          307 DSLPV  311 (394)
Q Consensus       307 ~~~~~  311 (394)
                      +....
T Consensus       224 ~P~~~  228 (280)
T COG3629         224 DPAPE  228 (280)
T ss_pred             CccHH
Confidence            55443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.06  E-value=3.7  Score=35.02  Aligned_cols=107  Identities=15%  Similarity=0.008  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---cc-------HHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PS-------FVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                      ..+-..=|..++++++|..|..-|..+++++.+..-...   +.       ...+...|..||...++++-|+....+++
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            333345577788899999999999999998876432111   11       12234578899999999999999988887


Q ss_pred             HHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          256 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .        .+|....-+...|.++....+|.+|...+--+.-++
T Consensus       256 ~--------lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  256 N--------LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             h--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6        356666667778889999999999988776655444

>PRK10941 hypothetical protein; Provisional

Probab=92.70  E-value=3.3  Score=33.60  Aligned_cols=74  Identities=15%  Similarity=0.025  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  307 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  307 (394)
                      ...+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.+.|.+..|..-++..++..     |+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~  247 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE  247 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence            456678888999999999999999999884        34445566788999999999999999999888765     56


Q ss_pred             ChhHHHH
Q 016124          308 SLPVGEA  314 (394)
Q Consensus       308 ~~~~~~~  314 (394)
                      .|.....
T Consensus       248 dp~a~~i  254 (269)
T PRK10941        248 DPISEMI  254 (269)
T ss_pred             chhHHHH
Confidence            6654433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.69  E-value=1.8  Score=28.14  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=27.4

Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      +|....+.+.+|..+...|++++|++.+-.++.
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            577778999999999999999999998877765

>PRK10941 hypothetical protein; Provisional

Probab=92.49  E-value=3.8  Score=33.26  Aligned_cols=67  Identities=10%  Similarity=0.034  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      ...+.+.++-.++...++++.|+.+.+..+.+        .|+.+.-+...|.+|..+|.+..|..-++..++.+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            45667788889999999999999999999987        34445566778999999999999999999988874

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.49  E-value=4.9  Score=32.55  Aligned_cols=207  Identities=15%  Similarity=0.066  Sum_probs=102.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhhCCCCccH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF  227 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~  227 (394)
                      +..+.+.|++..|.++..-.++.+.+.  ..+.+.   ....+++.+....+.-+ +-..+.+++++.. + .+......
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gd   89 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGD   89 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCC
Confidence            334455566666666555555555542  111111   11245555555554333 3456667777766 2 23333445


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH--------HHHhhcCCCCCcchHH-HHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          228 VTHLLNLAASYSRSKNFVEAERLLRICLD--------IMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      ...+..+|..+.+.|++.+|..+|-.+-.        +.........+..... ......-|...|+...|...+..-.+
T Consensus        90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~  169 (260)
T PF04190_consen   90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS  169 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            66788899999999999999988732210        1111111111222222 23334456778999999988887776


Q ss_pred             HHHHH----------cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 016124          299 IREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  368 (394)
Q Consensus       299 ~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  368 (394)
                      .....          ..+..|. ......|-.+ ...     ++...|....+.+...+. .+|.....+..+|..|...
T Consensus       170 ~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t-~e~-----~~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi  241 (260)
T PF04190_consen  170 KLIESHPKLENSDIEYPPSYPL-LNFLQLLLLT-CER-----DNLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHH---EEEEEEEEESS-HH-HHHHHHHHHH-HHH-----T-HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH--
T ss_pred             HHhccCcchhccccCCCCCCch-HHHHHHHHHH-Hhc-----CcHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCC
Confidence            53332          0112221 1111112222 222     234567776666655443 3467778889999999875


Q ss_pred             cC
Q 016124          369 GR  370 (394)
Q Consensus       369 g~  370 (394)
                      ..
T Consensus       242 ~~  243 (260)
T PF04190_consen  242 QP  243 (260)
T ss_dssp             -S
T ss_pred             CC
Confidence            54

; PDB: 3LKU_E 2WPV_G.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=9.4  Score=35.89  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           38 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        38 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      .|.-|+.+.+.. +.+......++...|..++..|++++|...|-+++..
T Consensus       349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            344455554443 3344567778888999999999999999999988765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.22  E-value=0.38  Score=41.07  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      +..+.+++.-.|+|..|++.++..---.+.....-.+-...+++.+|-+|+.+++|.+|+..|...+-...+
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678889999999999887643211111222234455678889999999999999999999998876544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.21  E-value=8  Score=34.36  Aligned_cols=68  Identities=10%  Similarity=0.046  Sum_probs=51.5

Q ss_pred             CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .++|....+|+.|-.-+..+ -+++....|++.+...        |....++...........+|+.-+.+|.+++.
T Consensus        14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--------PSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            35677778888888887777 8999999999988753        33444555556667777888888888888865

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.19  E-value=2.7  Score=28.84  Aligned_cols=74  Identities=12%  Similarity=0.053  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      +..+|......+++-.++-.|++|+.+.++.......+       ......|||..+..+|+.+-.+++++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            35688888999999999999999999988774222111       23456799999999999999999999887755544


Q ss_pred             c
Q 016124          262 V  262 (394)
Q Consensus       262 ~  262 (394)
                      .
T Consensus        84 i   84 (140)
T PF10952_consen   84 I   84 (140)
T ss_pred             c
Confidence            3

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.08  E-value=0.44  Score=40.67  Aligned_cols=72  Identities=11%  Similarity=0.169  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +..|.+++.-.|+|..|++.++..---....+..-.+..+..++.+|.+|..+++|.+|++.|...+-...+
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888999999999987653211112233334566778999999999999999999999999877654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.88  E-value=20  Score=38.28  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=75.8

Q ss_pred             CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      ......+|...|++....|+++.|...+-.|.+..          ...+....|..+...|+.. .|+..+++.++....
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence            45678899999999999999999999888876632          2346778899999999999 999999999966533


Q ss_pred             h-cCC--CCHH------HHHHHHHHHHHHHHhcCc--hhhhhhHHHHHHHHHH
Q 016124          346 E-FGS--ESEE------VMLTLKKVVSYLDKLGRK--EEKFPLKKRLSNLRMK  387 (394)
Q Consensus       346 ~-~~~--~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~  387 (394)
                      - .++  +.|.      ...+...++......|++  ++-+.+|..+.++.++
T Consensus      1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            2 111  0111      122344455555566663  2334566666666553

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.82  E-value=7.4  Score=33.15  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=95.8

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcC-CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  147 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  147 (394)
                      +...++.+|...-+..+.-...... .-+--.+.+++.+..+|...|+...-...+..-+...  .++.+....+...+.
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL  214 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence            4457888888877665543211000 0012345677888888888898777666666555443  234455566667788


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                      +-..|...+.|+.|.....++.-      +....+...++..+.+|.+..-+++|..|.+++-.|+...
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~~------pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSVY------PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhcccC------ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            88899999999999887766532      1122344667788899999999999999999999988753

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.80  E-value=1.2  Score=24.20  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      ..+|..|...|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.72  E-value=7.5  Score=34.31  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=14.9

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHH
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRI  126 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~a  126 (394)
                      ..|..||......|+++-|+.+|+++
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            34555566666666666666555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=6.3  Score=31.84  Aligned_cols=132  Identities=16%  Similarity=0.058  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh
Q 016124           34 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  113 (394)
Q Consensus        34 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (394)
                      +-+.-+.+.++-.+...  ......+++.++|..|.+.++.+.+.+...+.++-.-...  -..+..-+...+|.+|..+
T Consensus        93 eki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          93 EKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             HHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhccH
Confidence            33444545554443322  2346788999999999999999999999988876543322  2234444556677776555


Q ss_pred             CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      .-.++.++...   .+.++  |.+....-+.-...|.......+|.+|-.++...+..+..
T Consensus       169 ~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         169 KVVEESLEVAD---DIIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHH---HHHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            44444444333   33333  2232222223334455666777889998888888776543

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=91.44  E-value=9.3  Score=33.56  Aligned_cols=176  Identities=13%  Similarity=0.031  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHHHHH
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-------KKAVEIYHRVITILEL   90 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~   90 (394)
                      ....+|..++..|+|+-|...|+.+.+-+...  ......+.++-..|.+....+..       ++...+++.|...+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            35789999999999999999999887765321  11123444555555666555533       3777888888887766


Q ss_pred             hcC---CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHCCCHHHHHHH
Q 016124           91 NRG---TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKCANGNAEEAVEL  164 (394)
Q Consensus        91 ~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~  164 (394)
                      ...   ........+....+.++...|.+.+|...+-+.....-    .....   .+..+-.+|.+|            
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~------------  351 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY------------  351 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh------------
Confidence            321   11224455667778888889998888877666654421    01111   333444555555            


Q ss_pred             HHHHHHHHHhcccCCCc---hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          165 YKKALRVIKDSNYMSLD---DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       165 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                           ...... ...+.   ....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus       352 -----~~~~~~-~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  352 -----ASLRSN-RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             -----cccccC-CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                 000000 00011   111122223346778899999999999999998875

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=91.42  E-value=0.19  Score=42.80  Aligned_cols=138  Identities=18%  Similarity=0.225  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcc--cC--CCchHHHHHHHH----HHHHHHHHcCChHHHHHHHHHH
Q 016124          142 GMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSN--YM--SLDDSIMENMRI----DLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       142 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~--~~--~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a  212 (394)
                      ..++-.+|..|... .+.-.|+.++.++.+......  ..  .+..|..+.-+.    +....-.-.++.++   +--++
T Consensus       245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa  321 (615)
T KOG0508|consen  245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA  321 (615)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence            44555566555433 346678888888877654310  00  111122111110    11111111222221   22356


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  282 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  282 (394)
                      +-+.+++.|+.||++.......|-+|...|+++..++++.-|+.+.++.+.|-+|.+...+...++++..
T Consensus       322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            7778889999999988777778999999999999999999999999999999999999988888877653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.31  E-value=6.9  Score=31.82  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ....++..++..+...|+++.++..+++.+..        +|..-..+..+-..|...|+...|+..|++.-.....-.|
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            45677888999999999999999999988776        5666678888999999999999999999998876544444


Q ss_pred             CC
Q 016124          136 EN  137 (394)
Q Consensus       136 ~~  137 (394)
                      .+
T Consensus       223 i~  224 (280)
T COG3629         223 ID  224 (280)
T ss_pred             CC
Confidence            43

>PF12854 PPR_1: PPR repeat

Probab=91.03  E-value=0.33  Score=24.65  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          355 MLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       355 ~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                      ..++..|...|.+.|+.++|.++|++.
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            457888999999999999999999864

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.01  E-value=4.1  Score=28.66  Aligned_cols=68  Identities=19%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          227 FVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       227 ~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ...+.+++++++....+.   .+.+.+++..+.      .........+.+.|+..+.+.++|+.++.+....++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            456778889988876554   445555555443      02223455677889999999999999999999888754

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.57  E-value=0.68  Score=25.22  Aligned_cols=25  Identities=40%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      .++|..|...|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.45  E-value=3.1  Score=40.21  Aligned_cols=110  Identities=15%  Similarity=0.057  Sum_probs=68.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                      -+++...+.|+.|+..|++....+       |....-..+.+..|.....+-.-..--+.+.+|+..++...  +.+...
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  552 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAP  552 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCc
Confidence            345555666777777776655543       22222233445666666554332222256667776666654  234444


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  272 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  272 (394)
                      .-|...|.+|...|++++-++.+.-++..+     +.||.+...
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  591 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRL  591 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence            556677889999999999999999998865     456766554

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.34  E-value=2.1  Score=35.54  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI   80 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   80 (394)
                      ...-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..+++....-.
T Consensus        40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~  105 (400)
T KOG4563|consen   40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG  105 (400)
T ss_pred             HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344567889999999999999999999999999999999999999999999999999888766543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.32  E-value=3  Score=25.92  Aligned_cols=42  Identities=29%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      ..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            345556677788999999999999999988765444455544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.03  E-value=6.7  Score=31.79  Aligned_cols=73  Identities=16%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  266 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  266 (394)
                      ..+...+..|...|.+.+|+.+.++++..        +|..-..+..+-.++...|+--.+...|++.-+..+.-+|-+.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            34455678899999999999999999875        5666667778888999999999999999988777766666543


Q ss_pred             C
Q 016124          267 Q  267 (394)
Q Consensus       267 ~  267 (394)
                      .
T Consensus       352 d  352 (361)
T COG3947         352 D  352 (361)
T ss_pred             c
Confidence            3

>PF12854 PPR_1: PPR repeat

Probab=89.97  E-value=1.1  Score=22.77  Aligned_cols=26  Identities=27%  Similarity=0.532  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124          142 GMAMCSLAHAKCANGNAEEAVELYKK  167 (394)
Q Consensus       142 ~~~~~~la~~~~~~g~~~~A~~~~~~  167 (394)
                      ..+++.+...|.+.|+.++|.+++++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35788999999999999999999876

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.68  E-value=10  Score=31.18  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124          226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  305 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  305 (394)
                      ..+.+...||.+|.+.++|..|-..+.-.-. -......+.......+..+|.+|...++..+|..+..++--.....  
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~-~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--  177 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPL-DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--  177 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccCc-ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence            4566788999999999999999877643211 0000001112334566789999999999999999988874433222  


Q ss_pred             CCChhH-HHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          306 KDSLPV-GEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       306 ~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                       .++.. ...-..-|.+.-..+++-+.|..+|
T Consensus       178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy  208 (399)
T KOG1497|consen  178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY  208 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222 2222334566666666662344443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=89.66  E-value=1.3  Score=35.82  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..+.-....|+.++|..+|+.|+.+        .|....++..+|.......+.-+|-.+|-+|+.+
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            3455566789999999999999987        5667788999999999999999999999999876

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.54  E-value=13  Score=32.11  Aligned_cols=133  Identities=16%  Similarity=0.109  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC---CCCcchHhhhHhHHHHHHHhCcH---HHHHHHHHHHHHHH
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---TESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIY  130 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~  130 (394)
                      ..-.++..|........|++|+.++-.|-+.+.....   ..-...+..-..+.+||+.+.+.   ++|..-+..+-.-+
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            3344566778888888899988887777655433211   00112233334566777776553   34554444444433


Q ss_pred             HHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124          131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  210 (394)
Q Consensus       131 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (394)
                      ...+|.+..          .++.-.|                    ..+|....+...+..-|.+.+.+|+-++|.++++
T Consensus       242 ~~syGenl~----------Rl~~lKg--------------------~~spEraL~lRL~LLQGV~~yHqg~~deAye~le  291 (568)
T KOG2561|consen  242 ERSYGENLS----------RLRSLKG--------------------GQSPERALILRLELLQGVVAYHQGQRDEAYEALE  291 (568)
T ss_pred             hhhhhhhhH----------hhhhccC--------------------CCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            333222111          1111111                    1123333344445556777777777777777777


Q ss_pred             HHHHHHHHh
Q 016124          211 ECLLITEKY  219 (394)
Q Consensus       211 ~a~~~~~~~  219 (394)
                      .+.....+.
T Consensus       292 ~a~~~l~el  300 (568)
T KOG2561|consen  292 SAHAKLLEL  300 (568)
T ss_pred             HHHHHHHHe
Confidence            776655443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.39  E-value=7.7  Score=31.46  Aligned_cols=72  Identities=22%  Similarity=0.092  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124          231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  310 (394)
Q Consensus       231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  310 (394)
                      +...+..|...|.+.+|+++.++++.+        +|.....+..+-.++...|+--.|.+.|++.-+.....+|-+..+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd  353 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD  353 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence            444577889999999999999999873        566666778888999999999999999999888887777655443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=89.36  E-value=15  Score=32.73  Aligned_cols=211  Identities=13%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHhcCCCC
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ...+..+-..|+...|-..-.++..+.++............++.++..-...-   .++..-.++++.+.+.       +
T Consensus       290 ~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-------~  362 (656)
T KOG1914|consen  290 IEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-------D  362 (656)
T ss_pred             HHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-------c
Confidence            34455555556655444444444444333211111122222333332222111   2444455555555542       3


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .+..-++..+-..-.+..-...|...|.++-+.-..   ..+.-+..+   + .-|...++..-|...|+-.+..+    
T Consensus       363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---~hhVfVa~A---~-mEy~cskD~~~AfrIFeLGLkkf----  431 (656)
T KOG1914|consen  363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT---RHHVFVAAA---L-MEYYCSKDKETAFRIFELGLKKF----  431 (656)
T ss_pred             cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---cchhhHHHH---H-HHHHhcCChhHHHHHHHHHHHhc----
Confidence            333344555555556666677888888887654211   111111111   1 23567899999999999998864    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                         ++.+....   .....+...++-..+..+|++++..   ..  .......+|..+-..-..-|+....+++-++-..
T Consensus       432 ---~d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  432 ---GDSPEYVL---KYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             ---CCChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence               34444443   3455677889999999999998864   11  2223456777777777788888888877766665


Q ss_pred             HHH
Q 016124          257 IMT  259 (394)
Q Consensus       257 ~~~  259 (394)
                      .+.
T Consensus       501 af~  503 (656)
T KOG1914|consen  501 AFP  503 (656)
T ss_pred             hcc
Confidence            544

>PF13041 PPR_2: PPR repeat family

Probab=89.23  E-value=2.6  Score=23.60  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      .+++.+-..+.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4678888999999999999999999876

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=88.85  E-value=12  Score=31.02  Aligned_cols=96  Identities=14%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124          195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  274 (394)
Q Consensus       195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (394)
                      +....++.++|++++++..+.......  ...+......+|.++...|+..++.+.+...-.......+- .+.+-..++
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~~e--~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY  160 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEYKE--PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY  160 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence            444566899999999998877665432  23456677788999999999999999998887766555332 232444455


Q ss_pred             HHHH-HHHhhcChHHHHHHH
Q 016124          275 HLGI-TLYHLNRDKEAEKLV  293 (394)
Q Consensus       275 ~la~-~~~~~g~~~~A~~~~  293 (394)
                      .++. .|...|++.......
T Consensus       161 ~lssqYyk~~~d~a~yYr~~  180 (380)
T KOG2908|consen  161 SLSSQYYKKIGDFASYYRHA  180 (380)
T ss_pred             HHHHHHHHHHHhHHHHHHHH
Confidence            5554 455577776654433

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.83  E-value=6.9  Score=33.62  Aligned_cols=119  Identities=18%  Similarity=0.016  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHH
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIM  258 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~  258 (394)
                      +...+...|++......|++|+.++-.|-+.+.....   ......+..-..+.++|+...+   .++|..-+..+-.-+
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            3445566778888888899998888777655433211   0011122223345667766654   345555555444444


Q ss_pred             Hhhc-----------CCCCCcch---HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          259 TKTV-----------GPDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       259 ~~~~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      ...+           |+..|..+   +....-|.+.+.+|+-++|.++++.+.....+.
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            4333           34445433   334456889999999999999999998877654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.81  E-value=16  Score=32.32  Aligned_cols=96  Identities=18%  Similarity=0.083  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      ...++..+..+|.++.|+.+.+.              +..    .+.   +....|+.+.|.+..++             
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D--------------~~~----rFe---LAl~lg~L~~A~~~a~~-------------  343 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTD--------------PDH----RFE---LALQLGNLDIALEIAKE-------------  343 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS---------------HHH----HHH---HHHHCT-HHHHHHHCCC-------------
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCC--------------hHH----HhH---HHHhcCCHHHHHHHHHh-------------
Confidence            45667777888888877765432              111    122   34577888887765432             


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                      ......|..||...+.+|+++-|.++|+++-+                +..|..+|...|+.+.=.
T Consensus       344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~  393 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLS  393 (443)
T ss_dssp             CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHH
Confidence            22344788899999999999999888887543                245566677777754433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.29  E-value=2.4  Score=26.67  Aligned_cols=62  Identities=13%  Similarity=0.043  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          316 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       316 ~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ...|..+...|+.+ +|+.+|++++....+.+....|           .......++.|..+-+++........
T Consensus        12 I~kaL~~dE~g~~e-~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~~~~v~   73 (79)
T cd02679          12 ISKALRADEWGDKE-QALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTNLNMVK   73 (79)
T ss_pred             HHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455568888 9999999999988776554433           12223445666666555554444433

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF13041 PPR_2: PPR repeat family

Probab=88.20  E-value=2.9  Score=23.38  Aligned_cols=28  Identities=21%  Similarity=-0.008  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      .++..+-..+.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4677888899999999999999998875

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.68  E-value=18  Score=31.39  Aligned_cols=140  Identities=11%  Similarity=-0.003  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL--GSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      ......+...+..++|..|...+......   + ++.. . ...+..+...|  ....++.+|.+.++..+......   
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence            34566777888999999999999987763   1 2211 2 34455554444  56678889999888876542110   


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                        ......+..+.       +.-++...+.....................+..-|.--...|+|+.|...+-+++++.-+
T Consensus       203 --~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q  273 (379)
T PF09670_consen  203 --NQEREGLKELV-------EVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ  273 (379)
T ss_pred             --HhHHHHHHHHH-------HHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence              00011111111       111222222222221111000001222223333344445689999999999999887643

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=87.64  E-value=0.71  Score=22.41  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          357 TLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      ++..+-..|.+.|++++|.++|++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            466788899999999999999998764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.42  E-value=23  Score=32.44  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                      ..+.+-|.-+.+..+|..+++.|..++.....-  ..+...+....+++.||....+.+.|.+++++|-+..        
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--------  424 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--------  424 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------
Confidence            344556777778889999999998887743221  1223446677889999999999999999998886632        


Q ss_pred             hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      |...-.-..+..+....|+.+ +|+............
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se-~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSE-EALTCLQKIKSSEDE  460 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchH-HHHHHHHHHHhhhcc
Confidence            222223334445555667677 888877776655443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=87.26  E-value=4  Score=33.23  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      .+.|.-....|+.++|..+|+.|+.+        .|....++..+|......++.-+|-.+|-+++.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            34555567889999999999999986        4666778889999998889999999999998874

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.64  E-value=1.5  Score=21.14  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      +++.+-..|...|++++|...+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788899999999999999998754

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.06  E-value=22  Score=30.83  Aligned_cols=139  Identities=15%  Similarity=0.034  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH--HHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG--ITLYHLNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                      ....+.-....++|..|...+......   . ++. .. ...+..++  ..++..-++.+|.+.++..+......     
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-----  202 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-----  202 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence            345566677899999999999987762   1 111 11 33444454  44567889999999999877643210     


Q ss_pred             hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      ......+..+..+.....        .+.............-.+.....+..-|.--...|+|+.|...+-+++++.-+.
T Consensus       203 ~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~  274 (379)
T PF09670_consen  203 NQEREGLKELVEVLKALE--------SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH  274 (379)
T ss_pred             HhHHHHHHHHHHHHHHHH--------hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            011111222222221111        111111111110000012233333333444456899999999999998887654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.96  E-value=1.6  Score=33.81  Aligned_cols=55  Identities=24%  Similarity=0.471  Sum_probs=48.6

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        67 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .....|+.+.|.+.|.+++++        .|.....++.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            345678899999999999987        4677888999999999999999999999999987

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=85.72  E-value=2.5  Score=33.07  Aligned_cols=108  Identities=16%  Similarity=0.032  Sum_probs=64.4

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHH
Q 016124          278 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE  353 (394)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~  353 (394)
                      .-.+..|+++.|+++..-+++....+.+.-...    ++.....-+......|+.- +. .+......+. ......++-
T Consensus        91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~-e~-~~~~~~~~l~-~~~dmpd~v  167 (230)
T PHA02537         91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV-EP-YFLRVFLDLT-TEWDMPDEV  167 (230)
T ss_pred             eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC-Ch-HHHHHHHHHH-hcCCCChHH
Confidence            346789999999999999988654432211111    1233334455555666543 21 1233333332 222333445


Q ss_pred             HHHHHHHHHHHHH---------HhcCchhhhhhHHHHHHHHHHH
Q 016124          354 VMLTLKKVVSYLD---------KLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       354 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      .+..+..+|..+.         ..++...|..++++|+.+.++.
T Consensus       168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            5666777787773         4567889999999999987663

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.51  E-value=1.7  Score=33.65  Aligned_cols=56  Identities=13%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      ......++.+.|.+.|.+++.+.        |.....++.+|....+.|+++.|...|++.+++
T Consensus         3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            34556789999999999999874        566778999999999999999999999999987

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.39  E-value=3.3  Score=34.47  Aligned_cols=62  Identities=11%  Similarity=0.138  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                      .-+...|+-.+.++++++|...|..|..+....+|..+..+..+++..|..++..++.+.+.
T Consensus        42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V  103 (400)
T KOG4563|consen   42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV  103 (400)
T ss_pred             HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556788899999999999999999999999999999999999999999998887765543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.19  E-value=19  Score=29.27  Aligned_cols=220  Identities=13%  Similarity=0.042  Sum_probs=115.5

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILE   89 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~   89 (394)
                      ...+..+.++.=+..+.+.|++..|.+...-.++...+...+.+   ......++.+....+.-+ +-.++.++++... 
T Consensus         5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-   80 (260)
T PF04190_consen    5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-   80 (260)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence            34556677788888899999999999888888887766322222   222345566665554333 4556677777766 


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH--------HHHHhh-CCCchHHHHHHHHHHHHHHHCCCHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK--------IYTKVY-GENDGRVGMAMCSLAHAKCANGNAEE  160 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~  160 (394)
                      + .+......+..+..+|..+.+.|++.+|..+|-.+-+        +..... .....+...........|...++...
T Consensus        81 ~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~  159 (260)
T PF04190_consen   81 K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD  159 (260)
T ss_dssp             H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred             c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence            2 2333445567888999999999999999988843211        111000 01111222222333445778899999


Q ss_pred             HHHHHHHHHHHHHhc--------ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Q 016124          161 AVELYKKALRVIKDS--------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  232 (394)
Q Consensus       161 A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  232 (394)
                      |...+..-.+.....        ....++.|.+.-++.-+- + ...+    +...|....+.+..... .+|.....+.
T Consensus       160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~-t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~  232 (260)
T PF04190_consen  160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLL-T-CERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLD  232 (260)
T ss_dssp             HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHH-H-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHH-H-HhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHH
Confidence            998887766652211        011223344333222222 2 2223    23556555554444331 1345556667


Q ss_pred             HHHHHHHHcc
Q 016124          233 NLAASYSRSK  242 (394)
Q Consensus       233 ~la~~~~~~g  242 (394)
                      .+|..|....
T Consensus       233 ~IG~~yFgi~  242 (260)
T PF04190_consen  233 KIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHH---
T ss_pred             HHHHHHCCCC
Confidence            7777777644

; PDB: 3LKU_E 2WPV_G.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=85.06  E-value=1.5  Score=21.78  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124          357 TLKKVVSYLDKLGRKEEKFPLKKRLSN  383 (394)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~a~~  383 (394)
                      ++..+...|.+.|++++|.++|.+...
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356778889999999999999998764

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.64  E-value=64  Score=34.97  Aligned_cols=112  Identities=12%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      ....+.+|.+.|++....|+++.|...+-+|.+.          ....+....|..++.+|+...|+..+++.+.....-
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence            4568899999999999999999999988887762          244567889999999999999999999998765332


Q ss_pred             cCCC---Chh------HHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHh
Q 016124          304 FGKD---SLP------VGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQER  345 (394)
Q Consensus       304 ~~~~---~~~------~~~~~~~l~~~~~~~g~~~~-~A~~~~~~al~~~~~  345 (394)
                      ....   .|.      ...+...++......|+.+. .-+.+|+.+.++..+
T Consensus      1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            1111   011      12344455666667777542 335667777766543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.43  E-value=1.8  Score=22.36  Aligned_cols=30  Identities=17%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHH--HHHHHH
Q 016124          356 LTLKKVVSYLDKLGRKEEKFPLKK--RLSNLR  385 (394)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~  385 (394)
                      +.+..+|-.+..+|++++|+.+|.  -+..+.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld   33 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD   33 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            346778999999999999999944  655443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.09  E-value=40  Score=32.12  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .|.-|+.+.+.   .+.+...+..++...|..++..|++++|...|-+++..
T Consensus       349 ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  349 LYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            34445555554   35566777888889999999999999999999988765

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.07  E-value=16  Score=27.48  Aligned_cols=150  Identities=13%  Similarity=0.039  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHH
Q 016124          122 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  196 (394)
Q Consensus       122 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~  196 (394)
                      -|+.|..+++....  ....+.+.+.+|..+.     ..+++..|++.+..+-+.         +.+.   +-.++|.++
T Consensus        50 nF~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~~---aC~~~gLl~  115 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIPQ---ACRYLGLLH  115 (248)
T ss_pred             HHHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCHH---HHhhhhhhh
Confidence            45555555555432  2223344555554433     345788899999887662         1111   224455554


Q ss_pred             HHc-----CC--hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH------------------------HcccHH
Q 016124          197 HIV-----GR--GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS------------------------RSKNFV  245 (394)
Q Consensus       197 ~~~-----g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~  245 (394)
                      ..-     ++  ..+|++++.++-+.          ....+.+.|...|+                        -..+.+
T Consensus       116 ~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd  185 (248)
T KOG4014|consen  116 WNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD  185 (248)
T ss_pred             ccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence            432     22  56788888776543          11223333333333                        234556


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHHHHHHcC
Q 016124          246 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFG  305 (394)
Q Consensus       246 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~  305 (394)
                      .|.++-.++-++          .+..+..++.+.|..    -.+.++|..+-.+|.++.++.-.
T Consensus       186 ka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k  239 (248)
T KOG4014|consen  186 KALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK  239 (248)
T ss_pred             HHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            666666555542          344566677777654    23567888888888888776543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=83.90  E-value=3.3  Score=20.49  Aligned_cols=27  Identities=37%  Similarity=0.644  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      +++.+-..|.+.|++++|..+|.+..+
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356777889999999999999998765

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=83.21  E-value=26  Score=29.30  Aligned_cols=95  Identities=16%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH
Q 016124          151 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  230 (394)
Q Consensus       151 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  230 (394)
                      +....++.++|++++++..+.....    ..+..+..+...+|+++...|+..++.+.+...-.......+- .+.+...
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~  158 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSS  158 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-Chhhhhh
Confidence            3456679999999999999887653    2334556677889999999999999999999887776655432 2324444


Q ss_pred             HHHHHH-HHHHcccHHHHHHH
Q 016124          231 LLNLAA-SYSRSKNFVEAERL  250 (394)
Q Consensus       231 ~~~la~-~~~~~g~~~~A~~~  250 (394)
                      ++.++. .|...|++......
T Consensus       159 fY~lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  159 FYSLSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            555544 45566777655443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.89  E-value=36  Score=30.80  Aligned_cols=178  Identities=17%  Similarity=0.124  Sum_probs=102.4

Q ss_pred             HhCcHHHHHHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------------
Q 016124          112 KEGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------  175 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------  175 (394)
                      ....|++|...|.-+.....-.    .-..+|.....+..++.++..+|+.+-|..+.++++-.+...            
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            3456778888887776654311    012356677889999999999999999999999988765542            


Q ss_pred             --ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHH
Q 016124          176 --NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLR  252 (394)
Q Consensus       176 --~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~  252 (394)
                        .+..+.......+++..-..+...|-+..|.++++-.+.+-    ...+|.   +...+..+| .+..+|.=-++.++
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd----p~eDPl---~~l~~ID~~ALrareYqwiI~~~~  402 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD----PSEDPL---GILYLIDIYALRAREYQWIIELSN  402 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CcCCch---hHHHHHHHHHHHHHhHHHHHHHHH
Confidence              11122233333444455566778899999999988777651    111332   222222333 33444444444443


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC---hHHHHHHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIR  300 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~  300 (394)
                      ..-. ....  ..-|....+ ..+|..|.....   -..|...+.+|+.+.
T Consensus       403 ~~e~-~n~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  403 EPEN-MNKL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH  449 (665)
T ss_pred             HHHh-hccH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence            3311 1111  112333322 345666666555   456788888887764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=82.02  E-value=40  Score=30.63  Aligned_cols=178  Identities=11%  Similarity=-0.033  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                      -...+......-...|+++...-.+++++--+.        .....|...+......|+.+-|...+..+.++.      
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~------  361 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIH------  361 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc------
Confidence            344556666777788999999999998876442        233456677777777799999988888887753      


Q ss_pred             CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~  344 (394)
                       .+........-+.+-...|+++.|...++....-.        |....+-..-.......|+.+ .+.. +....... 
T Consensus       362 -~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~-~~~~-~~~l~s~~-  429 (577)
T KOG1258|consen  362 -VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLE-DANY-KNELYSSI-  429 (577)
T ss_pred             -CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchh-hhhH-HHHHHHHh-
Confidence             34444555556777788999999999998876533        343333334444556667766 5553 22222211 


Q ss_pred             hhcCCCCHHH-HHHHHHHHHH-HHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          345 REFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       345 ~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                       ..+..++.. ...+...++. +.-.++.+.|...+.++.++.+..+
T Consensus       430 -~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k  475 (577)
T KOG1258|consen  430 -YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK  475 (577)
T ss_pred             -cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence             112333322 2333444443 4456778888888888887766544

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=81.98  E-value=66  Score=33.12  Aligned_cols=155  Identities=17%  Similarity=0.123  Sum_probs=98.2

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHC---C--------------------
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---G--------------------  156 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g--------------------  156 (394)
                      ++..-.+|..+...|++.+|+..|..|+...+..  .|..+.+.++-.++.+..-.   |                    
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~  319 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS  319 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence            4556678999999999999999999999998874  35555555554444322110   0                    


Q ss_pred             ---------------------------------CHHHHHHHHHHHHHHHHhccc---CCCchHHHHHHHHHHHHHHHHcC
Q 016124          157 ---------------------------------NAEEAVELYKKALRVIKDSNY---MSLDDSIMENMRIDLAELLHIVG  200 (394)
Q Consensus       157 ---------------------------------~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g  200 (394)
                                                       -...-...+++++..+.+...   ..........+....+.++....
T Consensus       320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~  399 (1185)
T PF08626_consen  320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH  399 (1185)
T ss_pred             ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence                                             011112234444444433210   00112234455566777777776


Q ss_pred             --------------------ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          201 --------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       201 --------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                                          .-.++..++.+++.......  ...+....+..+|.+|...|-..++.-+++.++...
T Consensus       400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence                                66778888888877643322  344567789999999999999988887777776654

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PRK09169 hypothetical protein; Validated

Probab=81.93  E-value=82  Score=34.21  Aligned_cols=14  Identities=29%  Similarity=0.287  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHccc
Q 016124          230 HLLNLAASYSRSKN  243 (394)
Q Consensus       230 ~~~~la~~~~~~g~  243 (394)
                      .+.|..+.+.+.++
T Consensus       584 ~LAN~LnALSKWP~  597 (2316)
T PRK09169        584 GLANLLNALSKWPD  597 (2316)
T ss_pred             HHHHHHHHHhhCCC
Confidence            34444445555444

>smart00101 14_3_3 14-3-3 homologues

Probab=80.86  E-value=27  Score=27.95  Aligned_cols=182  Identities=13%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      ..+|.+....++|++...+..++++..... .+..+.      .+.++.+|- ..|....+...+.. ++......+  .
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~-eLt~EE------RnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~   74 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSE-ELTVEE------RNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--N   74 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCc-cCCHHH------HHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--c
Confidence            457788888999999999999987752100 011111      123334442 24555666666554 222111111  1


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHHHh-----hcC-----hHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITLYH-----LNR-----DKEAEK  291 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~~~-----~g~-----~~~A~~  291 (394)
                      +..    ..+..-|.. .=-++-.......+.+....+-+....   ....+...|..|.-     .|+     .+.|..
T Consensus        75 ~~~----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       75 EDH----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             hHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            111    111111111 112334455666666666554433211   11222222333321     222     458899


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHH
Q 016124          292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~A~~~~~~al~~~  343 (394)
                      .|++|.++....+.|.||-......+.+..+.. .++++ +|....+++++-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~-~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPD-RACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence            999999998887888888877766677666555 47777 8888777777544

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.32  E-value=12  Score=23.52  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      +...|.-.-..|++++|+.+|.++++.+.......+++
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~   46 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDE   46 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence            33445556778999999999999999876543233433

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=80.27  E-value=19  Score=32.05  Aligned_cols=93  Identities=17%  Similarity=0.024  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh---CcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---GKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..-|.-.+..+....++..|.+++..        .|.....+.+.+.++++.   |+.-.|+.-...|+.+        +
T Consensus       378 ~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n  441 (758)
T KOG1310|consen  378 KTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------N  441 (758)
T ss_pred             HhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------C
Confidence            33344444455667788888877765        455566777777777665   3444455555555543        5


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      |....+++.|+.++...+++.+|+.....+..
T Consensus       442 ~s~~kah~~la~aL~el~r~~eal~~~~alq~  473 (758)
T KOG1310|consen  442 PSIQKAHFRLARALNELTRYLEALSCHWALQM  473 (758)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence            77778899999999999999999988766544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=80.24  E-value=6.4  Score=20.32  Aligned_cols=23  Identities=13%  Similarity=0.342  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHH
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQ   40 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~   40 (394)
                      .+..+|..+..+|++++|+..|+
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH
Confidence            46778999999999999999954

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	394
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		3e-09
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		2e-07
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-05

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G D   ++  + 
Sbjct: 98  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI---QTRLGEDDTK 331
           +L +   +  + +E E     AL I +   G D   V +  + L S    Q +  + +T 
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 332 LLELLKRVLRIQEREFGSESEE 353
             E+L R     EREFGS  +E
Sbjct: 218 YKEILTRA---HEREFGSVDDE 236

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
            +      + KEAE L   AL IRE   GK    V + L+ L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYY 150
Query: 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
            +      + KEAE L   AL IRE   GK    V + L  L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE-EVEYYY 150
Query: 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
             ++G+ Y    +Y++++  YQ+ +  L+ R          +   +       G   +A+
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-------SAEAWYNLGNAYYKQGDYDEAI 55
Query: 79  EIYHRVITILELN-RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
           E Y +    LEL+ R  E+       ++LG+ + K+G   +A   + + L++        
Sbjct: 56  EYYQKA---LELDPRSAEA------WYNLGNAYYKQGDYDEAIEYYQKALEL-------- 98
Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
           D R   A  +L +A    G+ +EA+E Y+KAL +
Sbjct: 99  DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-15
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	7e-09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	1e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	8e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  126 bits (320), Expect = 4e-34
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
             H     S L     ++ + ++ +  LE   G     + T L  +A V     + K+A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
            + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G+  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMRIDL 192
             V   + +LA      G AEE    Y++AL +        L            N    L
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT----RLGPDDPNVAKTKNN----L 175

Query: 193 AELLHIVGRGQEGRELLEECL-LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251
           A      G+ Q+   L +E L    EK  G  +       ++            ++    
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301
                   K    D  +++  +  LG       + + A  L   A   R+
Sbjct: 236 EYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  114 bits (289), Expect = 1e-29
 Identities = 57/292 (19%), Positives = 102/292 (34%), Gaps = 18/292 (6%)

Query: 60  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 119
           S          +     AV +  + +  LE   G +  D+   L  L  ++  + K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 120 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179
             + +  L I  K  G++   V   + +LA      G  +EA  L K+AL + +      
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----V 118

Query: 180 LDD------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 233
           L          + N    LA L    G+ +E        L I     G + P+      N
Sbjct: 119 LGKFHPDVAKQLNN----LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 234 LAASYSRSKNFVEAERLLRICLDIM-TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 292
           LA+ Y +   + +AE L +  L     K  G  +       +H        ++ +++   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 293 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 344
                + +  A   DS  V   L  L ++  R G+ +     L     R ++
Sbjct: 235 GEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLE-AAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  112 bits (282), Expect = 1e-28
 Identities = 57/276 (20%), Positives = 92/276 (33%), Gaps = 22/276 (7%)

Query: 114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
                A  +  + L+   K  G +   V   +  LA         +EA  L   AL  I+
Sbjct: 15  VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA-IR 73

Query: 174 DSNY--------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225
           +            +L++         LA L    G+ +E   L +  L I EK  GK HP
Sbjct: 74  EKTLGKDHPAVAATLNN---------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124

Query: 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 285
                L NLA          E E   R  L+I    +GPDD +++    +L        +
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

Query: 286 DKEAEKLVLEALY-IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 344
            ++AE L  E L    E  FG  +             +    +         +       
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSAPYGEYGSW--Y 241

Query: 345 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380
           +    +S  V  TL+ + +   + G+ E    L+  
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 57/249 (22%), Positives = 92/249 (36%), Gaps = 22/249 (8%)

Query: 148 LAHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIV 199
             H          AV L K+AL    +             L+          LA +    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALE-DLEKTSGHDHPDVATMLNI---------LALVYRDQ 56

Query: 200 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259
            + +E   LL + L I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  
Sbjct: 57  NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116

Query: 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319
           K +G     ++  + +L +   +  + +E E     AL I     G D   V +  + L 
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176

Query: 320 SIQTRLGEDDTKLLELLKRVL-RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 378
           S   + G+       L K +L R  E+EFGS + +            +   ++ +  P  
Sbjct: 177 SCYLKQGKYQ-DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 379 KRLSNLRMK 387
           +       K
Sbjct: 236 EY--GSWYK 242

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290
             +     S       A  L +  L+ + KT G D   ++  +  L +     N+ KEA 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 291 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 350
            L+ +AL IRE   GKD   V   L+ L  +  + G+   +   L KR L I+E+  G  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIREKVLGKF 122

Query: 351 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380
             +V   L  +       G+ EE     +R
Sbjct: 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 1/109 (0%)

Query: 272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331
              H       L     A  L  +AL   E   G D   V   L+ L  +     +   +
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-E 61

Query: 332 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380
              LL   L I+E+  G +   V  TL  +     K G+ +E  PL KR
Sbjct: 62  AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (315), Expect = 5e-33
 Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 29  LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88
           + ++           N+     G      + +L  +     S GR + AV +  + +  L
Sbjct: 1   MHHHHHH---SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57

Query: 89  ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 148
           E   G +  D+   L  L  ++  + K  DA ++ +  L I  K  G++   V   + +L
Sbjct: 58  EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117

Query: 149 AHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIVG 200
           A      G  +EA  L K+AL  I++             L++         LA L    G
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALE-IREKVLGKDHPDVAKQLNN---------LALLCQNQG 167

Query: 201 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260
           + +E     +  L I +   G + P+      NLA+ Y +   F +AE L +  L    +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227

Query: 261 TV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319
              G  D       +H         + K+         + +  A   DS  V   L  L 
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK--ACKVDSPTVTTTLKNLG 285

Query: 320 SIQTRLGEDDTKLLELLKRVLRIQER 345
           ++  R G+ +     L +  +R +++
Sbjct: 286 ALYRRQGKFE-AAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (314), Expect = 5e-33
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 18/293 (6%)

Query: 17  AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 75
              LH +   Y++   YE ++ + ++ +  LE   G     + T L  +A V     + K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 76  KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 135
            A  + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMR 189
           ++   V   + +LA      G  EE    Y++AL + +      L            N  
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT----KLGPDDPNVAKTKNN-- 200

Query: 190 IDLAELLHIVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 248
             LA      G+ ++   L +E L    E+  G          ++            +  
Sbjct: 201 --LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258

Query: 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301
                      K    D  +++  + +LG       + + AE L   A+  R+
Sbjct: 259 SFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  108 bits (272), Expect = 6e-27
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 3/239 (1%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  + 
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 141
            R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194

Query: 142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 201
                +LA      G  ++A  LYK+ L    +  + S+DD           E     G+
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKGK 253

Query: 202 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260
            ++G    E       K    + P+  T L NL A Y R   F  AE L    +    +
Sbjct: 254 QKDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 94.1 bits (235), Expect = 5e-22
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250
           +L       GR +    L ++ L   EK  G +HP   T L  LA  Y     + +A  L
Sbjct: 32  NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91

Query: 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 310
           L   L I  KT+G D  +++  + +L +      + KEAE L   AL IRE   GKD   
Sbjct: 92  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151

Query: 311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 370
           V + L+ L  +    G+ + ++    +R L I + + G +   V  T   + S   K G+
Sbjct: 152 VAKQLNNLALLCQNQGKYE-EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210

Query: 371 KEEKFPLKKR 380
            ++   L K 
Sbjct: 211 FKQAETLYKE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 1/168 (0%)

Query: 206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265
                    +  +  G E P+ +  L NL   Y+    +  A  L +  L+ + KT G D
Sbjct: 5   HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64

Query: 266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325
              ++  +  L +     N+ K+A  L+ +AL IRE   GKD   V   L+ L  +  + 
Sbjct: 65  HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 326 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373
           G+   +   L KR L I+E+  G +  +V   L  +       G+ EE
Sbjct: 125 GKYK-EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 38/357 (10%)

Query: 9   KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 68
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 97

Query: 69  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 118
             +G   +A+    R + I  ELN     A     L++LG+++  +GK+           
Sbjct: 98  KVLGNFDEAIVCCQRHLDISRELNDKVGEARA---LYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 119 -----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 167
                      A   +   L + T +        G A  +L +     GN  +AV  +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

Query: 168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 227
            L + K+      D +       +L      +G  +   E  ++ LL+  + K       
Sbjct: 213 RLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVE 266

Query: 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 287
                +L  +Y+  +++ +A       L I  +      +  +     LG     L    
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC--WSLGNAYTALGNHD 324

Query: 288 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 344
           +A     + L I       D      A   L  +Q  LG   +    ++     I  
Sbjct: 325 QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 45/378 (11%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L   G       +    +  ++  + V      +    L      +      +    KA+
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67

Query: 79  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
           E +H  +T+   +      A       +LG+     G   +A     R L I  ++  + 
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKA---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124

Query: 138 DGRVGMAMCSLAHAKCANGNA--------------------EEAVELYKKALRVIKDSNY 177
                 A+ +L +   A G +                    + AV+ Y++ L ++     
Sbjct: 125 G--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG- 181

Query: 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 237
              D +       +L    +++G  ++     E+ LLI +++   +  +      NL  +
Sbjct: 182 ---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236

Query: 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297
           Y     F  A    +  L +  +      ++ S     LG T   L   ++A    L+ L
Sbjct: 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC--YSLGNTYTLLQDYEKAIDYHLKHL 294

Query: 298 YI-REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 356
            I +E+    D +  G A   L +  T LG  D + +   ++ L I  RE G +S E+  
Sbjct: 295 AIAQEL---NDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEIS-REVGDKSGELT- 348

Query: 357 TLKKVVSYLDKLGRKEEK 374
               +      LG     
Sbjct: 349 ARLNLSDLQMVLGLSYST 366

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 11  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
           D  +       +G+ Y+ L++YEK++  + + + + +    +       +   +     +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTA 319

Query: 71  IGRAKKAVEIYHRVITILE--LNRGTESA---DLVLPLFSLGSLFIKEGKAVDAESVFSR 125
           +G   +A+    + + I     ++  E     +L      LG  +      +   +    
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

Query: 126 ILKIYTKVYGENDGRVGMAMCSLAHAK 152
            L       G       M +  L   K
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPEK 406

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/244 (14%), Positives = 65/244 (26%), Gaps = 43/244 (17%)

Query: 135 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNY---MSLDDSIMENMR 189
           G         +         C +G+    V  ++ A++V  +                  
Sbjct: 1   GPGS-MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-------- 51

Query: 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 249
             L      +    +  E     L +       +         NL  +     NF EA  
Sbjct: 52  -QLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIV 108

Query: 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL--------------------NRDKEA 289
             +  LDI  +      ++ +    +LG   +                      +  + A
Sbjct: 109 CCQRHLDISRELNDKVGEARAL--YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166

Query: 290 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 349
                E L +       D    G A   L +    LG      +   ++ L I  +EFG 
Sbjct: 167 VDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR-DAVIAHEQRLLIA-KEFGD 222

Query: 350 ESEE 353
           ++ E
Sbjct: 223 KAAE 226

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 54/351 (15%), Positives = 102/351 (29%), Gaps = 35/351 (9%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
                     L +       +           G +S+     L    + L + G  +  V
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGV 68

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
             +   I     +  T SA        LG+ +   G    A       L +   +     
Sbjct: 69  AFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKD--------SN----YMSLDDS 183
                +  +L +     G  +EA    ++ L   R + D         N    Y +    
Sbjct: 125 --EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           + +           +        E  +E L +       +  +      NL  +Y    +
Sbjct: 183 LGQRNPGKFG--DDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-REI 302
           F  A    +  L I  +  G D  +      +LG +   L + ++A +     L +  E+
Sbjct: 239 FQAAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296

Query: 303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 353
               +     ++   L +  T L E +   +E   R L I  +E G    E
Sbjct: 297 ---GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIA-QELGDRIGE 342

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 55/351 (15%), Positives = 113/351 (32%), Gaps = 38/351 (10%)

Query: 10  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV-LESRYGKTSILLVTSLLGMAKVL 68
           D    +   L   G       +    +  +Q  I    E         L      +    
Sbjct: 42  DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT-----LSAIYSQLGNAY 96

Query: 69  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 127
             +G   KA++ +   +T+   +N     A       +LG+     G+  +A     R L
Sbjct: 97  FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS---SGNLGNTLKVMGRFDEAAICCERHL 153

Query: 128 KIYTKVYGEND---------------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172
            +  ++                    G+                    AVE Y++ L+++
Sbjct: 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213

Query: 173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 232
           +D      D         +L    +++G  Q   E  +E L I  ++   +  +      
Sbjct: 214 RDLG----DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANS 267

Query: 233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 292
           NL  S+     F +A    +  L +    +G + +  +     LG T   L+    A + 
Sbjct: 268 NLGNSHIFLGQFEDAAEHYKRTLALA-VELG-EREVEAQSCYSLGNTYTLLHEFNTAIEY 325

Query: 293 VLEALYI-REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342
               L I +E+    D +    A   L +  + +G  + + L+  ++ L++
Sbjct: 326 HNRHLAIAQEL---GDRIGEARACWSLGNAHSAIGGHE-RALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 52/309 (16%), Positives = 110/309 (35%), Gaps = 33/309 (10%)

Query: 9   KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 68
            +D   L AI   +G+ Y  L +Y K+M  ++  + + +S   +       S   +   L
Sbjct: 79  TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNLGNTL 136

Query: 69  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 118
             +GR  +A     R +T+  +L            L++LG+++  +GK +          
Sbjct: 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRA---LYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 119 --------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
                   A   +   LK+   +        G A  +L +     G+ + A+E +++ LR
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQAAIEHHQERLR 251

Query: 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 230
           + ++      D +       +L      +G+ ++  E  +  L +  +    E       
Sbjct: 252 IAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQS 305

Query: 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290
             +L  +Y+    F  A       L I  +      ++ +     LG     +   + A 
Sbjct: 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC--WSLGNAHSAIGGHERAL 363

Query: 291 KLVLEALYI 299
           K   + L +
Sbjct: 364 KYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 58/312 (18%), Positives = 90/312 (28%), Gaps = 37/312 (11%)

Query: 60  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 119
           S          +G        +         + G     + L L   G      G     
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGS--SMCLELALEGERLCNAGDCRAG 67

Query: 120 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179
            + F   ++  T    E+   +      L +A    G+  +A++ +K  L + K  N   
Sbjct: 68  VAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--- 120

Query: 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239
            D         +L   L ++GR  E     E  L +  +    +  S    L NL   Y 
Sbjct: 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH 177

Query: 240 R-----------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH-LGITLY 281
                              +    A    +  L +M        Q  +      LG T Y
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---CGNLGNTYY 234

Query: 282 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 341
            L   + A +   E L I    FG D      A   L +    LG+ +    E  KR L 
Sbjct: 235 LLGDFQAAIEHHQERLRIAR-EFG-DRAAERRANSNLGNSHIFLGQFE-DAAEHYKRTLA 291

Query: 342 IQEREFGSESEE 353
           +   E G    E
Sbjct: 292 LA-VELGEREVE 302

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 34/313 (10%)

Query: 9   KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 68
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 93

Query: 69  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD---------- 118
             +G   +A+    R + I               L++LG+++  +GK+            
Sbjct: 94  KVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151

Query: 119 ----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168
                     A  ++   L + T + G+     G A  +L +     GN  +AV  +++ 
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTAL-GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 228
           L + K+      D +       +L      +G  +   E  ++ LL+  + K        
Sbjct: 210 LLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEA 263

Query: 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 288
               +L  +Y+  +++ +A       L I  +      +  +     LG     L    +
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQ 321

Query: 289 AEKLVLEALYIRE 301
           A     + L I  
Sbjct: 322 AMHFAEKHLEISR 334

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 59/348 (16%), Positives = 117/348 (33%), Gaps = 41/348 (11%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L   G       +    +  ++  + V      +    L      +      +    KA+
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 79  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
           E +H  +T+   +      A       +LG+     G   +A     R L I  ++  + 
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKA---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120

Query: 138 DGRVGMAMCSLAHAKCANGNA--------------------EEAVELYKKALRVIKDSNY 177
                 A+ +L +   A G +                    + AV+LY++ L ++     
Sbjct: 121 G--EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG- 177

Query: 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 237
              D +       +L    +++G  ++     E+ LLI +++   +  +      NL  +
Sbjct: 178 ---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 232

Query: 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297
           Y     F  A    +  L +  +      ++ S     LG T   L   ++A    L+ L
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC--YSLGNTYTLLQDYEKAIDYHLKHL 290

Query: 298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345
            I +    KD +  G A   L +  T LG  D + +   ++ L I   
Sbjct: 291 AIAQEL--KDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 44/271 (16%), Positives = 97/271 (35%), Gaps = 32/271 (11%)

Query: 11  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
           D+        ++G+    L N++++++  QR +++      K       +L  +  V  +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHA 135

Query: 71  IGRA--------------------KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 110
            G++                    + AV++Y   ++++      + A       +LG+  
Sbjct: 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT--ALGDRAAQGRAFGNLGNTH 193

Query: 111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
              G   DA     + L I  + +G+       A  +L +A    G  E A E YKK L 
Sbjct: 194 YLLGNFRDAVIAHEQRLLIAKE-FGDKAA-ERRAYSNLGNAYIFLGEFETASEYYKKTLL 251

Query: 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 230
           + +       D ++       L     ++   ++  +   + L I ++ K  +       
Sbjct: 252 LARQLK----DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRA 305

Query: 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKT 261
             +L  +Y+   N  +A       L+I  + 
Sbjct: 306 CWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
             ++G+ Y  L  +E +   Y++ + +      +       S   +      +   +KA+
Sbjct: 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAI 283

Query: 79  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134
           + + + + I  EL    +        +SLG+ +   G    A     + L+I  +V 
Sbjct: 284 DYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 75.0 bits (184), Expect = 4e-15
 Identities = 38/338 (11%), Positives = 93/338 (27%), Gaps = 20/338 (5%)

Query: 10  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 69
            ++ +          +     N +++  + +     LE          + +   + +VL 
Sbjct: 8   REDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLH 64

Query: 70  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129
             G   +++ +  +   +    +       +  L     +   +G    A     +  ++
Sbjct: 65  CKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 130 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 189
             + + E        +   A    A    +EA    +  + V+                 
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-----YQPQQQLQCL 177

Query: 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAE 248
             L +     G     R  L     +     GK H  ++++   +   Y +   +   A 
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 308
             LR       K    ++  +     ++      L   + AE ++ E             
Sbjct: 236 NWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291

Query: 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE 346
           L     L  L  +  + G        +L   L++  R 
Sbjct: 292 LN--RNLLLLNQLYWQAGRKS-DAQRVLLDALKLANRT 326

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 14/232 (6%)

Query: 144 AMCSLAHAKCAN--GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 201
           A  +   A+ A   GN +EA  L K AL  +    + S            L E+LH  G 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR-----IVATSVLGEVLHCKGE 68

Query: 202 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261
                 L+++   +  ++        +  L+  +           A         ++ + 
Sbjct: 69  LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 321
                    F +      L+   R  EAE      + +      +  L     L  L+  
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAMLIQC 183

Query: 322 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373
               G+ D      L R+  +        S+ +    K  V Y    G K  
Sbjct: 184 SLARGDLD-NARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAA 233

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 19/291 (6%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L   G      + Y +++  Y+     L                 +A+    + +   ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEK--AEFHFKVAEAYYHMKQTHVSM 161

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
               + + I + N    S   +  LF +   +        A       L++   +  +  
Sbjct: 162 YHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
             + +++ ++A++   +G+ + AVE ++KA +V ++     L   +       L+  L  
Sbjct: 221 --IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL-----FGLSWTLCK 273

Query: 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258
            G+ Q+  + +EE L        K +      L  +       +   +        L   
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL-------LSYF 326

Query: 259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 309
            K                          ++A     + L  +E     + L
Sbjct: 327 EKKNLHAYIEACA--RSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 15/276 (5%)

Query: 31  NYEKSMLVYQRVINVLESRYGKTSILLVTSLLG-----MAKVLGSIGRAKKAVEIYHRVI 85
           +   + ++   V   ++       +L+  SL+      M   L           +   + 
Sbjct: 27  SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86

Query: 86  TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 145
           TI    +          LF  G     + + V+A   +    K    V  + +       
Sbjct: 87  TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE--KAEFH 144

Query: 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 205
             +A A         ++    +AL + ++    S+       +   +A          + 
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV---IAGNYDDFKHYDKA 201

Query: 206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265
              LE  L +      +        LLN+A SY RS +   A    +    +  + V   
Sbjct: 202 LPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301
              + F    L  TL    + ++A + + E L    
Sbjct: 260 LPKVLF---GLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 41/290 (14%), Positives = 89/290 (30%), Gaps = 21/290 (7%)

Query: 14  LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-SLLGMAKVLGSIG 72
           L+      M       + Y         ++  +E+   K + LL   SL           
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNR-PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQK 115

Query: 73  RAKKAVEIYHRVITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131
              +A+  Y      L  ++   E A+     F +   +    +   +     + L IY 
Sbjct: 116 EYVEAIGYYREAEKELPFVSDDIEKAEF---HFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 191
                   R   ++  +A       + ++A+   + AL +  D          + N    
Sbjct: 173 NHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN---- 227

Query: 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251
           +A      G  Q   E  ++   ++ +      P     L  L+ +  ++    +A + +
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFI 284

Query: 252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301
              LD +T                L + L  + ++   E+ + + L   E
Sbjct: 285 EEGLDHITARSHKF-------YKELFLFLQAVYKETVDERKIHDLLSYFE 327

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 16/221 (7%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           I  +           L  +   Y   ++Y+K++   +  + +         I    SLL 
Sbjct: 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA--ISLLN 227

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +A      G  + AVE + +     +++R      L   LF L     K G+   A    
Sbjct: 228 IANSYDRSGDDQMAVEHFQKA---AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
              L   T    +    + + + ++           + +  ++K               +
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-----------KNLHA 333

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224
            +E      A +       ++      + L   E     E 
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 7/194 (3%)

Query: 155 NGNAEEAVELYKKALRVIK---DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211
             +  +A  L  +  + I+   +   + +  S+M      + + L           + E 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84

Query: 212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271
              I    K          L          K +VEA    R     +      DD   + 
Sbjct: 85  LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAE 142

Query: 272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331
               +    YH+ +   +   +L+AL I +      S+   ++L  +          D K
Sbjct: 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYD-K 200

Query: 332 LLELLKRVLRIQER 345
            L  L+  L +   
Sbjct: 201 ALPHLEAALELAMD 214

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 32/255 (12%), Positives = 80/255 (31%), Gaps = 16/255 (6%)

Query: 11  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
           D          M   Y  ++    SM   ++   + +      +I L+      A     
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLFATNFLD 196

Query: 71  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
           + + + A+  + +  ++ E  +  +   +   L+++G     + +  DA   F R + ++
Sbjct: 197 LKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254

Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 190
            +        +  A   +       G  ++A E + K +   + +          + + +
Sbjct: 255 EES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---------DVIYL 303

Query: 191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250
              E L  +       E ++      E      +       +++A  Y   KNF +A   
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAY 361

Query: 251 LRICLDIMTKTVGPD 265
                 +     G  
Sbjct: 362 FLKVEQVRQLIQGGV 376

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 37/291 (12%), Positives = 100/291 (34%), Gaps = 18/291 (6%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
               G        Y  ++  +++  + L   + K  I        M++    + +   ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
           +   +   I +      +  L+       + F+   +  DA S F +   +      +  
Sbjct: 164 DYARQAYEIYK-EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQP 220

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
             +G  + ++   K +    E+A+  +K+A+ V ++SN +             + ++ + 
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL----ITQIHYK 276

Query: 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258
           +G+  +  E   + +  ++K     + S    L +L  S    +        L   +   
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY- 335

Query: 259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 309
                 D +  +   + +    +     ++A    L+   +R++  G  SL
Sbjct: 336 -----ADLEDFA---IDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 15/221 (6%)

Query: 4   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 63
           I    +     L        + +  L+ YE ++  +Q+  ++ E+      +    +L  
Sbjct: 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG--RTLYN 229

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +     S  + + A+  + R I + E         L    F +  +  K GK   A    
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFE--ESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
           S+ +    K        + ++      +   +G  EEA++ +   L              
Sbjct: 288 SKGMAYSQKA----GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD------ 337

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224
            +E+  ID+A+  H     Q+      +   + +  +G   
Sbjct: 338 -LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 18/196 (9%), Positives = 60/196 (30%), Gaps = 9/196 (4%)

Query: 155 NGNAEEAVELYKKALRVIK---DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211
             +  +A  L ++  + +    +   + L  S+ME     + E L  + + +   +    
Sbjct: 25  RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84

Query: 212 CLLITEKYKGKEHPSFVT--HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 269
            LL+    K       +               + ++ A +  +     +      D    
Sbjct: 85  DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEK 142

Query: 270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 329
           +     +  + Y++ +   +     +A  I +      ++ + +      +    L + +
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-EHEAYNIRLLQCHSLFATNFLDLKQYE 201

Query: 330 TKLLELLKRVLRIQER 345
              +   ++   + E 
Sbjct: 202 -DAISHFQKAYSMAEA 216

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 42/269 (15%)

Query: 22  MGSMYSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
           +G  Y  + +  E +     +    LE  YG        + +             +A+  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATT-LEKTYGP-------AWIAYGHSFAVESEHDQAMAA 147

Query: 81  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140
           Y     +             LP+  +G  +     +  AE  FS+ L I           
Sbjct: 148 YFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APE 191

Query: 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 200
               M  +      NG  + A + +  AL  IK        D   E +  +L  +   + 
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLK 250

Query: 201 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260
           +  E  +   + L++         P   +    +   +S   NF  A       L +   
Sbjct: 251 KYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299

Query: 261 TVGPDDQSISFPMLHLGITLYHLNRDKEA 289
               DD         LG  +     D EA
Sbjct: 300 --RRDDTFSVT---MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 31/285 (10%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +++ +   +    +++    +   V+           + +          L  + +A + 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG--------TLVELNKANEL 75

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTKVYGE 136
             + H+++   +L          +  F++G  ++  G   + A    S+   +       
Sbjct: 76  FYLSHKLV---DLYP-----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------- 120

Query: 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 196
            +   G A  +  H+       ++A+  Y  A + +    ++ +         + +    
Sbjct: 121 -EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCHLPM---------LYIGLEY 169

Query: 197 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256
            +    +       + L I         P     +  +     ++  +  AE+     L+
Sbjct: 170 GLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221

Query: 257 IMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIR 300
            +             P+L +LG     L +  EA     +AL + 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           +L++G  Y    N + +   + + ++ +              +  +  V    G  K A 
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALS-IAPED-------PFVMHEVGVVAFQNGEWKTAE 213

Query: 79  EIYHRVITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
           + +   +  +  +            L +LG +  K  K  +A     + L +        
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-------- 265

Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
             +      ++ +     GN E AV+ +  AL +
Sbjct: 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 16  DAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGR 73
           D  ++H +G +      ++ +   +   +  +++   + ++     LL  +  V   + +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251

Query: 74  AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133
             +A++ + + + +                 ++G +    G   +A   F   L +    
Sbjct: 252 YAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL---- 299

Query: 134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELY 165
                     ++  L H         EA    
Sbjct: 300 ----RRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 11/212 (5%)

Query: 116 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175
           A +A        +    +   +      A   L +        +EA   ++   +  + S
Sbjct: 2   AFEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 235
                D +        +  +  + G     R    E   +      ++  +   +   +A
Sbjct: 60  G----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVA 114

Query: 236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 295
                  +   A +     L    +    D  +I+     LG          EA++  L 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 327
           A  I       DS  V E +  L  ++     
Sbjct: 173 ARDIFA-ELE-DSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 10  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 69
                       +G +Y+ ++ ++++   +Q +    +     T+     +L  +  V  
Sbjct: 20  AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVER 77

Query: 70  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129
             G    A   +     +L  +   +        + + ++ +  G    A   + + L  
Sbjct: 78  MAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 130 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
             +   ++   +  A   L        N  EA + + +A  +
Sbjct: 137 AQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 29  LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI- 87
            +               L             +   +  V   + R  +A   +  +    
Sbjct: 6   HDYALAERQAQAL----LAHPAT-----ASGARFMLGYVYAFMDRFDEARASFQALQQQA 56

Query: 88  --LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 145
                +     A     L  +G +    G    A   F    ++   +  E+        
Sbjct: 57  QKSGDHTAEHRA-----LHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANA 110

Query: 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 205
             +A      G+   A + Y+K+L   + ++    D   +      L +L        E 
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLVYAQQAD----DQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 244
           ++       I  +   ++  +    +  L        + 
Sbjct: 167 QQHWLRARDIFAEL--EDSEAVNELMTRLNGLEHHHHHH 203

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 60/287 (20%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
             ++G++Y      ++++  Y+  +  L+  +       +   + +A  L + G  + AV
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALR-LKPDF-------IDGYINLAAALVAAGDMEGAV 121

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 135
           + Y   +          + DL      LG+L    G+  +A++ + + ++    +   + 
Sbjct: 122 QAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW- 172

Query: 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 195
                      +L     A G    A+  ++KA+  +  +   +          I+L  +
Sbjct: 173 ----------SNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAY---------INLGNV 212

Query: 196 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255
           L                L +         P+      NLA  Y        A    R  +
Sbjct: 213 LKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 256 DIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 300
           ++      P      FP  +  L   L       EAE     AL + 
Sbjct: 265 EL-----QPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 21  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
            +G++   L   E++   Y + I   +  +         +   +  V  + G    A+  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNF-------AVAWSNLGCVFNAQGEIWLAIHH 191

Query: 81  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 137
           + + +T+          + +    +LG++  +      A + + R L +   +  V+G  
Sbjct: 192 FEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-- 241

Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 197
                    +LA      G  + A++ Y++A+  ++     +           +LA  L 
Sbjct: 242 ---------NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAY---------CNLANALK 282

Query: 198 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257
             G   E  +     L +         P+    L NLA       N  EA RL R  L++
Sbjct: 283 EKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
                 P+  +      +L   L    + +EA     EA+ I 
Sbjct: 335 F-----PEFAAAHS---NLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 60/284 (21%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           + +      + E ++  Y   +                    +  +L ++GR ++A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQ-YNPDL-------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            + I            +  +   +LG +F  +G+   A   F + + +   +   Y    
Sbjct: 159 LKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY---- 206

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
                   +L +        + AV  Y +AL  +  ++ +            +LA + + 
Sbjct: 207 -------INLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH---------GNLACVYYE 249

Query: 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258
            G      +     + +         P F     NLA +     +  EAE      L + 
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 259 TKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 300
                P             L          +EA +L  +AL + 
Sbjct: 302 -----PT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 56/265 (21%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           +G +++       ++  +++ +  L+  +       + + + +  VL       +AV  Y
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT-LDPNF-------LDAYINLGNVLKEARIFDRAVAAY 226

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            R +++        S +  +   +L  ++ ++G    A   + R +++   +   Y    
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
                  C+LA+A    G+  EA + Y  ALR +  ++  SL          +LA +   
Sbjct: 275 -------CNLANALKEKGSVAEAEDCYNTALR-LCPTHADSL---------NNLANIKRE 317

Query: 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258
            G  +E   L  + L +         P F     NLA+   +     EA    +  + I 
Sbjct: 318 QGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 259 TKTVGPDDQSISFPMLHLGITLYHL 283
                P          ++G TL  +
Sbjct: 370 -----PTFADAYS---NMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +LL + S++      ++S       I                +   +  V    G+ ++A
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLL-------AEAYSNLGNVYKERGQLQEA 86

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 134
           +E Y   + +          D +    +L +  +  G    A   +   L+       V 
Sbjct: 87  IEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194
                        L +   A G  EEA   Y KA+   + +  ++           +L  
Sbjct: 139 -----------SDLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAW---------SNLGC 177

Query: 195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 254
           + +  G         E+ + +         P+F+   +NL      ++ F  A       
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 255 LDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 300
           L +      P+       ++H  L    Y       A      A+ ++
Sbjct: 230 LSLS-----PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 106 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 165
           L     + G    AE    ++ +                +  L+         + +    
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNT--------GVLLLLSSIHFQCRRLDRSAHFS 56

Query: 166 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225
             A++        +           +L  +    G+ QE  E     L +         P
Sbjct: 57  TLAIK-QNPLLAEAY---------SNLGNVYKERGQLQEAIEHYRHALRL--------KP 98

Query: 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 285
            F+   +NLAA+   + +   A +     L        PD   +      LG  L  L R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCV---RSDLGNLLKALGR 150

Query: 286 DKEAEKLVLEALYIR 300
            +EA+   L+A+  +
Sbjct: 151 LEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 46/242 (19%)

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
            + +A      G  + A     ++             D    L  L S+  +  +   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA 53

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
              +  +K    +          A  +L +     G  +EA+E Y+ ALR +K       
Sbjct: 54  HFSTLAIKQNPLLA--------EAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGY 104

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
                    I+LA  L   G  +   +     L          +P       +L      
Sbjct: 105 ---------INLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKA 147

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 298
                EA+      ++       P+     F +    LG           A     +A+ 
Sbjct: 148 LGRLEEAKACYLKAIET-----QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 299 IR 300
           + 
Sbjct: 198 LD 199

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 43/324 (13%), Positives = 115/324 (35%), Gaps = 28/324 (8%)

Query: 25  MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84
           +       E++ + +++ +   + +  + +  L  +       L +   ++ A++   + 
Sbjct: 147 LKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAIASY----RLDNWPPSQNAIDPLRQA 201

Query: 85  ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144
           I    LN   +    VL    L  +  +  +  + E +    L+    V           
Sbjct: 202 I---RLNPDNQYL-KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--------DV 249

Query: 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGRG 202
           + S A         ++A+EL KKAL  I ++   +  +       +   +    + +   
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 203 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 262
           ++  EL+   +   +K   + + +       LA+ ++ +  + EAE   +          
Sbjct: 310 RKLLELIGHAVAHLKKAD-EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK----- 363

Query: 263 GPDDQSISFPMLHLGITL-YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 321
                +     L  G    Y +  + +A    +E + I + +  K+ +   + L  +  +
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--KDKLQKIAKM 421

Query: 322 QTRLGEDDTKLLELLKRVLRIQER 345
           +      D++ L +L  +  + E+
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEK 445

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 17/185 (9%)

Query: 109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168
           L   E    D E       K++ +   +N          LA+ K   G  E A+E  +KA
Sbjct: 24  LMEGENSLDDFED------KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77

Query: 169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 228
             +I+  +    +   +     + A + + +GR  + +  +++   + EK+         
Sbjct: 78  EELIQQEHADQAEIRSLVTW-GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 229 THLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 286
                   +  +        A+      L+       P +   +     L I  Y L+  
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS---GLAIASYRLDNW 188

Query: 287 KEAEK 291
             ++ 
Sbjct: 189 PPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 30/174 (17%)

Query: 14  LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 73
           +++     M      LE    ++   ++                      +A +     +
Sbjct: 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADE-ANDNL-------FRVCSILASLHALADQ 349

Query: 74  AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTK 132
            ++A   + +  +  EL          L     G+  + + K  D A   F   +KI  K
Sbjct: 350 YEEAEYYFQKEFS-KELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 133 VYG----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
                                +G    A+  LA  +  N   ++A E  ++ L 
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 24/195 (12%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 122
            A    +  + ++A + Y +             +A         G +     +  +A   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA---FEQAGMMLKDLQRMPEAVQY 98

Query: 123 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182
             +   +Y +    +     MA+           +  +AV LY++A  V ++   +    
Sbjct: 99  IEKASVMYVENGTPD--TAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 242
            ++       + LL    +  E    L++   + ++ +   +P+     +          
Sbjct: 156 ELIGKA----SRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRA 209

Query: 243 NFVEAERLLRICLDI 257
           ++V A++ +R    I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 154 ANGNAEEAVELYKKALRVIKDSNYMSLDD-----SIMENMRIDLAELLHIVGRGQEGREL 208
           A     EA E   KA + +K S      D     S         A       + ++ ++ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA----AVAFKNAKQLEQAKDA 58

Query: 209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268
             +        +   H +               +   EA + +     +  +   PD  +
Sbjct: 59  YLQEAEAHANNRSLFHAA--KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116

Query: 269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 328
           ++   L     L       +A  L  +A  + E    +      E +     +  R  + 
Sbjct: 117 MA---LDRAGKLMEPLDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKF 171

Query: 329 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 367
           D +    L++   + + E  +        + +V+  L +
Sbjct: 172 D-EAAASLQKEKSMYK-EMENYPTCYKKCIAQVLVQLHR 208

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 11/165 (6%)

Query: 17  AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 76
           A+ L          +  K++ +YQ+   V E+            +   +++L    +  +
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIGKASRLLVRQQKFDE 173

Query: 77  AVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 135
           A     +  ++  E+              +   + +     V A+            + G
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKK---CIAQVLVQLHRADYVAAQKCVRE----SYSIPG 226

Query: 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
            +      A+  L  A     + E+ + + +  L    D++Y  L
Sbjct: 227 FSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 17  AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 76
               ++G+ +  L N+  +++ +++ + + +    K +     +   +      +G  + 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEFET 67

Query: 77  AVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 135
           A E Y +    L L R   + A      +SLG+ +        A     + L I  ++  
Sbjct: 68  ASEYYKKT---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174
                 G A  SL +A  A GN ++A+   +K L + ++
Sbjct: 125 RIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 135 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 192
           G    R        +L +     GN  +AV  +++ L + K+    + +     N    L
Sbjct: 1   GPGS-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN----L 55

Query: 193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252
                 +G  +   E  ++ LL+  + K            +L  +Y+  +++ +A     
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301
             L I  +      +  +     LG     L    +A     + L I  
Sbjct: 114 KHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
             +LG+     G   DA     + L I  +   +      +A  +L +A    G  E A 
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETAS 69

Query: 163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222
           E YKK L + +     +++     +    L     ++   ++  +   + L I ++ K  
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYS----LGNTYTLLQDYEKAIDYHLKHLAIAQELK-- 123

Query: 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260
           +         +L  +Y+   N  +A       L+I  +
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 10  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 69
            D+        ++G+ Y  L  +E +   Y++ + +      +       S   +     
Sbjct: 43  GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYT 100

Query: 70  SIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128
            +   +KA++ + +    L + +   +        +SLG+ +   G    A     + L+
Sbjct: 101 LLQDYEKAIDYHLKH---LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157

Query: 129 IYTKV 133
           I  +V
Sbjct: 158 ISREV 162

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 44/293 (15%)

Query: 8   LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 67
           L+ D   LD   LH  +         K  L+   +++               + L +   
Sbjct: 332 LEIDPYNLDVYPLH-LASLHESGEKNKLYLISNDLVD-RHPEK-------AVTWLAVGIY 382

Query: 68  LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 127
              + +  +A   + +      ++     A            F  EG+   A S ++   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPA-----WIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 128 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 187
           +++   +        +    L       GN   A E  + +   +   + + L       
Sbjct: 435 RLFQGTH--------LPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYDPLLL------- 478

Query: 188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 247
              +L  +       Q      +  LL+ +K        +     NL  +Y + K +  A
Sbjct: 479 --NELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
              L   L +       +D ++      + +   H      A   + E+L I 
Sbjct: 536 IDALNQGLLL-----STNDANVHT---AIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 36/283 (12%), Positives = 81/283 (28%), Gaps = 43/283 (15%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +LL           +   + +  +++ +            +         L   G   K 
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVYPLHLASLHESGEKNKL 358

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
             I + ++   + +      +  +   ++G  ++   K  +A   FS+   +        
Sbjct: 359 YLISNDLV---DRHP-----EKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------- 402

Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 197
           D + G A    AH+    G  ++A+  Y  A R +    ++           + L     
Sbjct: 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-LFQGTHLPY---------LFLGMQHM 452

Query: 198 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257
            +G      E L+    +               L  L        +   A    +  L +
Sbjct: 453 QLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504

Query: 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           + KT   +    +    +LG     L     A   + + L + 
Sbjct: 505 VKKTQSNEKPWAA-TWANLGHAYRKLKMYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 44/395 (11%), Positives = 110/395 (27%), Gaps = 86/395 (21%)

Query: 2   SGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVIN---------------- 44
           +     ++D    L+A + +  G +Y+ L N++++   Y+  +                 
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244

Query: 45  ----------VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 94
                     VL+  Y   S      L  +  +  +    +  +      ++ +      
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302

Query: 95  ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 154
           +S+DL   L           + +D  ++ ++IL+I      +              +   
Sbjct: 303 KSSDL---LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLD-------VYPLHLASLHE 351

Query: 155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214
           +G   +   +    +        ++          + +      V +  E R    +   
Sbjct: 352 SGEKNKLYLISNDLVD-RHPEKAVTW---------LAVGIYYLCVNKISEARRYFSKSST 401

Query: 215 ITEKY------KG------KEH--------------PSFVTHLLNLAASYSRSKNFVEAE 248
           +  ++               EH                     L L   + +  N + A 
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

Query: 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 308
             L+    +        D      +  LG+  ++ +  + A      AL + +     + 
Sbjct: 462 EYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

Query: 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 343
            P       L     +L   D   ++ L + L + 
Sbjct: 514 -PWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS 546

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 60/431 (13%), Positives = 134/431 (31%), Gaps = 98/431 (22%)

Query: 9   KDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILL-----VTSLL 62
             + P  + +L  +  +   ++ N+         +   + S   +   LL        LL
Sbjct: 191 NCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 63  GMAKVLGSIGRAK--KAVEIYHRVITILELNRGTESADLV-------LPLFSLGSLFIKE 113
               VL ++  AK   A  +  +   IL   R  +  D +       + L         +
Sbjct: 249 ----VLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 114 GKAVDAESVFSRILKIYTK-----VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168
               + +S+  + L    +     V   N  R+ +   S+        N +       K 
Sbjct: 302 ----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKL 355

Query: 169 LRVIKDSNYMSLDDSIMENMRIDLA----------ELLHIV---GRGQEGRELLEEC--- 212
             +I+ S    L+ +    M   L+           LL ++       +   ++ +    
Sbjct: 356 TTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 213 LLITEKYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGP 264
            L+ ++ K          + ++               ++ V+   + +   D        
Sbjct: 415 SLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPY 468

Query: 265 DDQSISFPMLHLGITLYHLNRDKEAEKLVL-EALYIREIAFGKDSL-PVGEALDCLVSIQ 322
            DQ       H+G   +HL   +  E++ L   +++ +  F +  +     A +   SI 
Sbjct: 469 LDQYFYS---HIG---HHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSIL 521

Query: 323 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382
             L +     L+  K  +   + ++           + V + LD L + EE         
Sbjct: 522 NTLQQ-----LKFYKPYICDNDPKYE----------RLVNAILDFLPKIEENL------- 559

Query: 383 NLRMKYKQKVQ 393
            +  KY   ++
Sbjct: 560 -ICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 66/365 (18%), Positives = 113/365 (30%), Gaps = 90/365 (24%)

Query: 39  YQRVINVLESRYGKTSILLVTSLLGMAK-VLGS-----IGRAKKAVEIYHRVITILELNR 92
           Y+ +++V E  +          +  M K +L       I  +K AV    R+   L L++
Sbjct: 18  YKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSK 74

Query: 93  GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY------TKVYGE------NDGR 140
             E              F++E   ++ + + S I          T++Y E      ND +
Sbjct: 75  QEEMVQK----------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 200
           V             N +  +     ++AL  ++ +  +                L+   G
Sbjct: 125 VFAKY---------NVSRLQPYLKLRQALLELRPAKNV----------------LID--G 157

Query: 201 RGQEGRELL--EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258
               G+  +  + CL     YK +    F    LNL      S   V  E L ++   I 
Sbjct: 158 VLGSGKTWVALDVCL----SYKVQCKMDFKIFWLNLK--NCNSPETV-LEMLQKLLYQID 210

Query: 259 TKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEK--LVLEALYIREI--AFGKDSLPV 311
                  D S +   L +      L R    K  E   LVL  +   +   AF       
Sbjct: 211 PNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------ 263

Query: 312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 371
              L C + + TR  +    L       + +         +EV   L K       L  +
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDCR 314

Query: 372 EEKFP 376
            +  P
Sbjct: 315 PQDLP 319

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 56.0 bits (134), Expect = 7e-09
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 203 QEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKNFVEAERLLRICLDIMT 259
           +   ELLE C L  EK       S V  L             +++  A +  +  +   +
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371

Query: 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 318
           K       +++   L LG     L      EK + +A+ I E+A GKD   + E    +
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214
             +  E +E+ + +    K S+     +  M +M      +   +   +   +  ++ + 
Sbjct: 311 YKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265
              K+      +  +  L L   Y   +N    E+ L+  + IM    G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 10/79 (12%), Positives = 33/79 (41%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           ++     +   ++++E ++   Q++I      Y   S+ + +  L + ++   +      
Sbjct: 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAG 401

Query: 78  VEIYHRVITILELNRGTES 96
            +   + I I+E+  G + 
Sbjct: 402 EKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%)

Query: 70  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129
                 + +EI       +       +  ++  ++    + +       A     +I+K 
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 130 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
           Y+K Y      V      L        N     +  KKA+ +++
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211
            C  G  ++     K+  +  ++     +  S     +ID A    +     E  +L  E
Sbjct: 278 HCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLY---HEVVKLCRE 334

Query: 212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271
           CL   E      +   +  L   +   S  + + EA    R  +D   K    ++  +  
Sbjct: 335 CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394

Query: 272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319
            ++  G+T +H    +    ++ +A  I  +  G       +     +
Sbjct: 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 70  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129
           S G   + V++    +   E      +  ++  L     +        +A     R++  
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380

Query: 130 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-----KDSNYMSLDDSI 184
           Y K+Y  N+ ++GMA+          G+ E    +  KA  ++                 
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KD 436

Query: 185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 226
           +E MR+     L +  + +     + E  L  +  +    PS
Sbjct: 437 LEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPS 478

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 34/195 (17%)

Query: 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
           L +L ++  ++G   +A  ++ + L++              A  +LA      G  +EA+
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222
             YK+A+R+     +         +   ++   L  +   Q   +     + I       
Sbjct: 64  MHYKEAIRI--SPTFA--------DAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 282
            +P+F     NLA+ +  S N  EA    R  L +      PD         +L   L  
Sbjct: 107 -NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDA---YCNLAHCLQI 157

Query: 283 LNRDKEAEKLVLEAL 297
           +    + ++ + + +
Sbjct: 158 VCDWTDYDERMKKLV 172

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%)

Query: 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 203
           ++ +LA+ K   GN EEAV LY+KAL V     +             +LA +L   G+ Q
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA--------AAHSNLASVLQQQGKLQ 60

Query: 204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 263
           E     +E + I         P+F     N+  +    ++   A +     + I      
Sbjct: 61  EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107

Query: 264 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           P          +L           EA      AL ++
Sbjct: 108 PAFADA---HSNLASIHKDSGNIPEAIASYRTALKLK 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 12  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 71
            P   A   ++ S+       +++++ Y+  I  +   +         +   M   L  +
Sbjct: 39  FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTF-------ADAYSNMGNTLKEM 90

Query: 72  GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131
              + A++ Y R I I        +        +L S+    G   +A + +   LK+  
Sbjct: 91  QDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140

Query: 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184
                       A C+LAH      +  +  E  KK + ++ D    +   S+
Sbjct: 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +A +    G  ++AV +Y + + +          +      +L S+  ++GK  +A   +
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
              ++I              A  ++ +      + + A++ Y +A++ I  +   +    
Sbjct: 67  KEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAH--- 114

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
                  +LA +    G   E        L +         P F     NLA       +
Sbjct: 115 ------SNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIVCD 160

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 291
           + + +  ++  + I+   +  +      P   +   L H  R   AE+
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAER 208

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 43/290 (14%)

Query: 12  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVI-------NVLESRYGKTSILLVTSLLGM 64
           +    A  L  G +       +++   +++V+          E+         +  L   
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 65  AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 124
           A           A+    +++ +                      FIKEG+   A S   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 125 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 179
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 179 AASKLKSDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

Query: 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVAEYTVRSKERICHCFS 283

Query: 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 289
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 284 KDEKPVEAIRICSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 57/298 (19%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
            L +G           ++  +   ++  +            +    A V  ++G++K A+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVD-GDPDN-------YIAYYRRATVFLAMGKSKAAL 57

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 135
               +VI    L     +A         G L +K+GK  +AE  F ++LK      +   
Sbjct: 58  PDLTKVI---ALKMDFTAA-----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK- 108

Query: 136 ENDGRVGMAMCSLAHAKCA-----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 190
           E + ++  A         A       +   A+    K L V        L        R 
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL--------RE 158

Query: 191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250
             AE     G  ++    L+           K           ++  Y +  +   +   
Sbjct: 159 LRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSE 210

Query: 251 LRICLDIMTKTVGPDDQS---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299
           +R CL +       D +              ++     L    R  +A       +  
Sbjct: 211 VRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 44/275 (16%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 174

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 135
                   +         +D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 175 SDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 225

Query: 136 ENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
            +  +V     +   A     +G   +A   Y+  ++   + +         E     + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKER----IC 279

Query: 194 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 253
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 288
             +        +DQ I      L      L + ++
Sbjct: 332 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 43/246 (17%)

Query: 60  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 119
             L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+  A
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAA 56

Query: 120 ESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-- 174
               ++++ +   +T                  H     G  +EA + +KK L+      
Sbjct: 57  LPDLTKVIALKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 175 ---SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231
                   L  +         A               L++ L +                
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELR 157

Query: 232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 291
              A  + +     +A   L+    +       D+   +     +    Y L   + +  
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLK-----SDN---TEAFYKISTLYYQLGDHELSLS 209

Query: 292 LVLEAL 297
            V E L
Sbjct: 210 EVRECL 215

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 41/234 (17%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +       G  ++A     + + I                 +L  +F  E +   A+  +
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
            + L          D R    + +           EEA +   +A +             
Sbjct: 95  RKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER----SR 142

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
           + EN+ +   ++     +  + +E  E+ L +        + +  +  L +A    + + 
Sbjct: 143 VFENLGLVSLQM----KKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297
           +V A +   +         G      +   L LGI L  +  D++        L
Sbjct: 191 YVPARQYYDLFAQG-----GGQ----NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           +  ++ T    + +   Y++ +   +SR  +        L      L    R ++A +  
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALA-SDSRNARV-------LNNYGGFLYEQKRYEEAYQRL 128

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 141
                   L              +LG + ++  K   A+  F + L++        +   
Sbjct: 129 LEASQDT-LYPERSRV-----FENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQ 174

Query: 142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175
                 +A           A + Y    +    +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 47/240 (19%)

Query: 106 LGSLFIKEGKAVDAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
           LG  +++ G    A+    + L+I       +            +LA         + A 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAH-----------AALAVVFQTEMEPKLAD 91

Query: 163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222
           E Y+KAL      N   L+     N    L E      R +E  + L E    T      
Sbjct: 92  EEYRKALA-SDSRNARVLN-----NYGGFLYEQ----KRYEEAYQRLLEASQDTLY---- 137

Query: 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 282
             P       NL     + K   +A+      L +       +  S     L +   LY 
Sbjct: 138 --PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPS---VALEMADLLYK 187

Query: 283 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342
                 A        Y      G  +     +L   + +     + D        ++ R+
Sbjct: 188 EREYVPA-----RQYYDLFAQGGGQNA---RSLLLGIRLAKVFEDRD-TAASYGLQLKRL 238

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 4/127 (3%)

Query: 200 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259
            + ++   + +  +    +     +   +  L     +        EA       ++   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL---- 315
                        ++ +G    H     +A K +  A  I  +  G++   + + +    
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420

Query: 316 DCLVSIQ 322
           +C  +I+
Sbjct: 421 ECDANIR 427

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 213
           A+   E+ + + +  +    +S  +   +     +     +    +G  +E        +
Sbjct: 299 AHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356

Query: 214 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265
                +    HP     ++ +         F +A + LR+  DIM  T G +
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 10/79 (12%), Positives = 27/79 (34%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +L         L   E+++    R +      +  +  +    ++ + K+    G   +A
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQA 390

Query: 78  VEIYHRVITILELNRGTES 96
           ++       I+ +  G E 
Sbjct: 391 MKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 14/116 (12%), Positives = 42/116 (36%)

Query: 58  VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 117
           V   L   + L +  + ++ + +   +I+         +   +  L       I  G   
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346

Query: 118 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
           +A    +R ++ Y   +  +    G+ +  +   +   G   +A++  + A  +++
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 26/146 (17%)

Query: 155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214
             +    +   + A+R                   + LA+    +G    G   ++  L 
Sbjct: 2   TADGPRELLQLRAAVRH--RPQDFVA--------WLMLADAELGMGDTTAGEMAVQRGLA 51

Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274
           +        HP     +  L       +   EA  LL+   D       P+   I    L
Sbjct: 52  L--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGI---AL 95

Query: 275 HLGITLYHLNRDKEAEKLVLEALYIR 300
            LG  L    + + A      A  + 
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 25/205 (12%), Positives = 42/205 (20%), Gaps = 37/205 (18%)

Query: 72  GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131
               + +      +               +    L    +  G     E    R L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 191
                       A+  L   +       EA  L ++A     +         I       
Sbjct: 53  ------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALW---- 96

Query: 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251
           L   L   G+ +           +       E P     LLN        +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 252 RICLDIMTKTVGPDDQSISFPMLHL 276
           R  +      V P      F  L  
Sbjct: 152 RAAVAQGVGAVEP------FAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 34/186 (18%)

Query: 114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
                        ++           +  +A   LA A+   G+        ++ L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 233
              +              L  +     R  E   LL++             P      L 
Sbjct: 53  HPGHP--------EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALW 96

Query: 234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 293
           L  +   +     A         ++     P++  I      L      L   +  + L 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYI---TAQLLNWRRRLCDWRALDVLS 148

Query: 294 LEALYI 299
            +    
Sbjct: 149 AQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120
            L +A     +G          R + +               +  LG +   + +  +A 
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77

Query: 121 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
            +  +                      L HA    G AE A   Y +A +
Sbjct: 78  VLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 51/289 (17%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L + G  +    N   + ++ Q  IN L             S + +A  L     +++  
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESIN-LHPTP--------NSYIFLALTLADKENSQEFF 296

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
           + + + +   +LN   E        +  G ++       +A+  F +   +  +      
Sbjct: 297 KFFQKAV---DLNP--EYPPT---YYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---- 344

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
                    LA      G   E+   + +     K           +       AE+L  
Sbjct: 345 ----YPYIQLACLLYKQGKFTESEAFFNETKL--KFPTL-----PEVPTFF---AEILTD 390

Query: 199 VGRGQEGRELLEECLLITEKYKG--------KEHPSFVTHLLNLAASYSRSKNFVEAERL 250
            G      +  +    + E  +             + +    +   +    + F  A +L
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450

Query: 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299
           L    ++        D       + L      + +  EA +L  ++  +
Sbjct: 451 LTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 53/306 (17%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA------------- 65
           LL   S   +L N+  +M     +    +        +L  +L   A             
Sbjct: 96  LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155

Query: 66  ---KVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKE 113
              +VL S         I+   + +  +N  +           A   L   +     +  
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215

Query: 114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173
                +  ++  +L   T           +A+C          N  +A  L ++++ +  
Sbjct: 216 DLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-- 272

Query: 174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 233
                S          I LA  L      QE  +  ++ + +        +P +     +
Sbjct: 273 HPTPNSY---------IFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYH 315

Query: 234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 293
               Y   +++  A+   +    +      P++    +P + L   LY   +  E+E   
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSL-----NPEN---VYPYIQLACLLYKQGKFTESEAFF 367

Query: 294 LEALYI 299
            E    
Sbjct: 368 NETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 47/317 (14%), Positives = 95/317 (29%), Gaps = 50/317 (15%)

Query: 7   SLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 65
            L   +    A+ L   G+ + T +N+ +++  YQ  I  L+                ++
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-LDPNE-------PVFYSNIS 66

Query: 66  KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 125
               S G  +K +E   + +   E+       D    L    S     G   DA    S 
Sbjct: 67  ACYISTGDLEKVIEFTTKAL---EIK-----PDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 126 I-----------------------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
           +                       +K+  +   +++GR    + S        G  +  +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222
           E+         D+ Y  L D++           L       +  ++    L         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237

Query: 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 282
              +    L      +    N ++A+ LL+  +++      P   S       L +TL  
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYI----FLALTLAD 288

Query: 283 LNRDKEAEKLVLEALYI 299
               +E  K   +A+ +
Sbjct: 289 KENSQEFFKFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 34/206 (16%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
              H G MY  L++Y+ +   +Q+  + L           V   + +A +L   G+  ++
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQS-LNPEN-------VYPYIQLACLLYKQGKFTES 363

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 134
              ++                L         +    G    A   +    ++     K++
Sbjct: 364 EAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415

Query: 135 -----GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 189
                      +     S    +        A++L  KA  +  D           E  +
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRS--------EQAK 465

Query: 190 IDLAELLHIVGRGQEGRELLEECLLI 215
           I LA+L   + +  E  EL E+  ++
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAIL 491

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 43/290 (14%)

Query: 12  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-------VLESRYGKTSILLVTSLLGM 64
           +    A  L  G +       +++   +++V+          E++        +  L   
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 65  AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 124
           A      G    A+    +++ +                      FIKEG+   A S   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 125 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 179
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 202 AASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFS 306

Query: 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 289
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 307 KDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 348

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 44/276 (15%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 197

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 135
                   +          D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 248

Query: 136 ENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
            +  +V      +  A+    +G   +A   Y+  ++   + +         E     + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER----IC 302

Query: 194 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 253
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 289
             +        +DQ I      L      L + ++ 
Sbjct: 355 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 35/250 (14%), Positives = 74/250 (29%), Gaps = 43/250 (17%)

Query: 58  VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 117
           V   L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+ 
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSK 77

Query: 118 DAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174
            A    ++++++   +T                  H     G  +EA + +KK L+    
Sbjct: 78  AALPDLTKVIQLKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 175 S-----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 229
                     L  S         A      G        L++ L +              
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAE 178

Query: 230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 289
                A  + +     +A   L+    +       D+   +     +    Y L   + +
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGDHELS 230

Query: 290 EKLVLEALYI 299
              V E L +
Sbjct: 231 LSEVRECLKL 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 16/159 (10%), Positives = 49/159 (30%), Gaps = 21/159 (13%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           +GS +    N+  ++   ++ I    +               + +         KA   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PTTTD-------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYTKVYGEND 138
            +V+ +          ++ +              + K   A+  + +++++      +  
Sbjct: 166 VKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177
             +  A   +A+    N +  +A   +K  L +  D   
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
            G +         ++  YQ  ++  ++         +     +     + G    A++  
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVD-RDTTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            + I                  + LG  +    + V A+S F ++L++       Y    
Sbjct: 132 EKQI---RPTTTDPKV-----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWR 182

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184
            R   A          +     A   Y+K + V         D+ I
Sbjct: 183 ARANAAQDP-------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 24/256 (9%), Positives = 63/256 (24%), Gaps = 48/256 (18%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
                       NY +++ V+ ++    +                 A     + +   A 
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEA-KKYNS-------PYIYNRRAVCYYELAKYDLAQ 57

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
           +      + +   +   +          G + +K+G+   A   +   +   T       
Sbjct: 58  KDIETYFSKVNATKAKSAD-----FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---- 108

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLA--- 193
                    +       GN   A++  +K +R        +  L  +   N     A   
Sbjct: 109 ----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

Query: 194 ----------------------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231
                                        +    +   E+ + +      K     +   
Sbjct: 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224

Query: 232 LNLAASYSRSKNFVEA 247
             +A  Y+ +++ V+A
Sbjct: 225 EYIAYYYTINRDKVKA 240

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 7   SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 66
           ++  +  +   +   +   Y    NY+K+ L Y+ ++              V  L   A+
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-KAPNN-------VDCLEACAE 96

Query: 67  VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 126
           +    G+ K A+ +Y +++   +L     +A        LG+ +    +    +      
Sbjct: 97  MQVCRGQEKDALRMYEKIL---QLEADNLAA-----NIFLGNYYYLTAEQEKKK------ 142

Query: 127 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
           L+   K    +  ++  A      +K      E+A    +K + 
Sbjct: 143 LETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINV--------LESRYGKTSILLVTSLLGMAKVLGS 70
           +L   S         +++  +++ I +          +   K S +       +A     
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 71  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
                KA   Y  ++   +        + V  L +   + +  G+  DA  ++ +IL++ 
Sbjct: 67  NRNYDKAYLFYKELL---QKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALR 170
                  +     A   L +        E + +E   K L 
Sbjct: 118 -------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 22/206 (10%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 61  LLGMAKVLGSIGRAKKAVEIYHRVITI------LELNRGTESADLVLP--LFSLGSLFIK 112
           +L         G+  +AV  + + I +      +      +    +       L   + K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 113 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172
                 A   +  +L+                + + A  +   G  ++A+ +Y+K L++ 
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVD--------CLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 173 KDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHL 231
            +++ ++          I L    ++   + ++  E   + L                  
Sbjct: 118 -EADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 232 LNLAASYSRSKNFVEAERLLRICLDI 257
                S   +  + +A   L+  +  
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRI--DLAELLH 197
            M     A    G   +AV  +++ + +  D      + ++D +   + ++  +LA    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 198 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257
                 +     +E L        ++ P+ V  L   A          +A R+    L +
Sbjct: 66  KNRNYDKAYLFYKELL--------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 258 MTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 299
                  D+ +     + LG   Y    ++K+  +   + L  
Sbjct: 118 -----EADNLAA---NIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 39/314 (12%), Positives = 88/314 (28%), Gaps = 66/314 (21%)

Query: 21  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
            +G   +  E    +++        L+ +        +     +A    +   A  A+  
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARM-LDPKD-------IAVHAALAVSHTNEHNANAALAS 111

Query: 81  YHRVITI------LELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKI---Y 130
               +        L         D+  L + S    F    +  +  ++    L++    
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 190
            +++            SL      + N + A    ++A+  ++  +    +      +  
Sbjct: 172 AQLH-----------ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWN-----KLGA 214

Query: 191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250
            LA       R QE  +     L I        +P +V  + N+A SYS    +  A + 
Sbjct: 215 TLANG----NRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 251 LRICLDIMTKTVGPDDQSISFPMLH---------LGITLYHLNRDKEAEKLVLEALYIRE 301
           L   + +          + +                + L  +NR         E  Y + 
Sbjct: 263 LVRAIYMQ-----VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV-----ELTYAQN 312

Query: 302 IAFGKDSLPVGEAL 315
           +        +   L
Sbjct: 313 VEPFAKEFGLQSML 326

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
               +  +    +A   +  V           + +      SLG    +  K   A    
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-----SNYM 178
           +    +        D +      +LA +     NA  A+   +  L          S  +
Sbjct: 79  NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 238
             D  I +                +E R LL   L +        +P+      +L   Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLY 182

Query: 239 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 291
           + S N+  A   LR  +++      PDD       L   LG TL + NR +EA  
Sbjct: 183 NLSNNYDSAAANLRRAVELR-----PDD-----AQLWNKLGATLANGNRPQEALD 227

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 10  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 69
           ++           G       +   ++L  +  I   +            +   +     
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGD-------AEAWQFLGITQA 110

Query: 70  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129
                + A+    R +   EL       + +  L +L   +       DA       +K 
Sbjct: 111 ENENEQAAIVALQRCL---ELQ-----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 130 ---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 186
              Y  +  +N          ++ +   +   E   ELY +A       N   +D  +  
Sbjct: 163 NPKYKYLV-KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQT 217

Query: 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 246
                L  L H+ G      +     L +         P   +    L A+ +      E
Sbjct: 218 G----LGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEE 265

Query: 247 AERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYI 299
           A       L+I      P      F      LGI+  +L   +EA    L AL +
Sbjct: 266 AVEAYTRALEIQ-----PG-----FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 40/242 (16%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
                   G     +      I     + G   A        LG    +      A    
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAI---LQDPGDAEA-----WQFLGITQAENENEQAAIVAL 122

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YMSL 180
            R L++              A+ +LA +     + ++A E  K  ++           + 
Sbjct: 123 QRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIK-QNPKYKYLVKNK 173

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
             S     R+  +         +  +EL  E           +          L   +  
Sbjct: 174 KGSPGLTRRMSKS--PVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHL 225

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 298
           S  F  A       L +      P+D       L   LG TL + +R +EA +    AL 
Sbjct: 226 SGEFNRAIDAFNAALTVR-----PED-----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 299 IR 300
           I+
Sbjct: 276 IQ 277

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 76  KAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134
            A + + +      +     E+ +           F   G +V+A       ++I+T   
Sbjct: 55  LAGDSFLKAADYQKKAGNEDEAGNT---YVEAYKCFKSGGNSVNAVDSLENAIQIFTH-- 109

Query: 135 GENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
                R       L    +    +  +A++ Y+ A         ++L +          A
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK----CA 165

Query: 194 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 253
           +L  + G+  E  ++  + +            S   + L        + + V A R L+ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 254 CLDI 257
               
Sbjct: 225 GQSE 228

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 36/290 (12%), Positives = 79/290 (27%), Gaps = 60/290 (20%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           L H G       +   +    ++ I  L  R          S + MA ++     + +  
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NSYIYMALIMADRNDSTEYY 290

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138
             + + +   +L+    ++ +    +  G +         A   F +  ++        D
Sbjct: 291 NYFDKAL---KLDS--NNSSV---YYHRGQMNFILQNYDQAGKDFDKAKEL--------D 334

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198
                    LA         ++   L+ +A R  K              +    AE+L  
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEA--------PEVPNFFAEILTD 384

Query: 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAER 249
                +  +  +  + +                + +A    ++         +NF+EA  
Sbjct: 385 KNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436

Query: 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299
           LL     +        D       + L           EA  L  E+  +
Sbjct: 437 LLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/163 (11%), Positives = 47/163 (28%), Gaps = 23/163 (14%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +  H G M   L+NY+++   + +    L+          +   + +A +     +    
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKE-LDPEN-------IFPYIQLACLAYRENKFDDC 357

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 134
             ++                +          +   +     A   +   +++      +Y
Sbjct: 358 ETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409

Query: 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177
                 + +   +L        N  EA  L +KA ++  D   
Sbjct: 410 V-GIAPL-VGKATLLTRNPTVENFIEATNLLEKASKL--DPRS 448

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 38/287 (13%)

Query: 19  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
           +L        +   ++                 + S           + L S+       
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPT----ELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 79  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----- 133
            I+   +T    +   E AD  L                 A+  F++  +++ +      
Sbjct: 169 GIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 134 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 192
              +   ++ +++      K    +   A E  KKA+ +       S          I +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSY---------IYM 276

Query: 193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252
           A ++       E     ++ L +          +  +   +        +N+ +A +   
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299
              ++      P++    FP + L    Y  N+  + E L  EA   
Sbjct: 329 KAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 221 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 280
           G +        L L +++     + +AE +L   +        P+ Q++    +   + L
Sbjct: 20  GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQAL---RVFYAMVL 71

Query: 281 YHLNRDKEAEKLVLEAL 297
           Y+L R ++  +L+L+ +
Sbjct: 72  YNLGRYEQGVELLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 69  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128
           G +G   +AV  Y + I       G +  DL      LGS F   G+   AE+V +  +K
Sbjct: 1   GVLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55

Query: 129 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169
            +                  A      G  E+ VEL  K +
Sbjct: 56  QFPNHQA--------LRVFYAMVLYNLGRYEQGVELLLKII 88

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 60  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 119
           ++   A+ L S  R    V    R     E++R  +  +    L    S++  +     A
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDR-----EMSRSVDVTNTTF-LLMAASIYFYDQNPDAA 120

Query: 120 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179
                +   +               M             + A +  KK            
Sbjct: 121 LRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQ-------- 159

Query: 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239
            +D+ +  +      L     + Q+   + +E           +    +  L   AA + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHM 211

Query: 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298
               +  AE +L+  LD                +++L +   HL +  E     L  L 
Sbjct: 212 AQGRWEAAEGVLQEALDK-----DSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLK 262

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 54/301 (17%)

Query: 21  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
           ++G+  +  E    ++   +R +  L+           T+L+ +A    +    ++A EI
Sbjct: 103 YLGTTQAENEQELLAISALRRCLE-LKPDN-------QTALMALAVSFTNESLQRQACEI 154

Query: 81  YHRVITI--------LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 132
               +               G   A L      LGSL   +   ++ + +F   +++   
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213

Query: 133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 192
              + D       C L      +G  ++AV+ +  AL V    N   L       +   L
Sbjct: 214 -SIDPD-----VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKLGATL 261

Query: 193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252
           A       + +E        L +         P ++    NL  S        EA     
Sbjct: 262 ANG----NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 253 ICLDIMTKTVGPDDQSISFPMLH--------LGITLYHLNRDKEAEKLVLEALYIREIAF 304
             L++         +                L + L  L +           L      F
Sbjct: 310 EALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 305 G 305
           G
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 35/231 (15%)

Query: 77  AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136
               Y +     E N   +        F  G   ++EG   +A  +F   ++   K + E
Sbjct: 45  TSATYDKGYQFEEENPLRDHPQP----FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99

Query: 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 196
                  A   L   +  N     A+   ++ L +    +      + +  + +      
Sbjct: 100 -------AWQYLGTTQAENEQELLAISALRRCLEL--KPDN----QTALMALAVSFTNE- 145

Query: 197 HIVGRGQEGRELLEECLLITEKYK-------GKEHPSFVTHLLNLAASYSRSKNFVEAER 249
                 ++  E+L + L  T  Y             + +     +  S      F+E + 
Sbjct: 146 ---SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
           L    + +   ++ PD Q        LG+         +A      AL +R
Sbjct: 203 LFLAAVRLDPTSIDPDVQCG------LGVLFNLSGEYDKAVDCFTAALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 33/232 (14%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
                   G    AV ++   +              +     LG+   +  + + A S  
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
            R L++              A+ +LA +        +A E+ +  LR    +    +  +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPA 172

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLE--ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 241
                   L     I+G        LE  E  L   +         V     L   ++ S
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV--QCGLGVLFNLS 230

Query: 242 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 291
             + +A       L +      P+D      +L   LG TL + N+ +EA  
Sbjct: 231 GEYDKAVDCFTAALSVR-----PND-----YLLWNKLGATLANGNQSEEAVA 272

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
            G++Y   E Y+++  ++++ +                    +  VL  + + K A+   
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALR-AGMEN-------GDLFYMLGTVLVKLEQPKLALPYL 148

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            R +   ELN      +     F  G     EG   +A S F+ + +    +   +    
Sbjct: 149 QRAV---ELN-----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF---- 196

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177
                   +         N E+A+E+  KA+ +    ++
Sbjct: 197 -------YNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 24/151 (15%)

Query: 21  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
             G     LE  ++ + V  +    L  +        V ++   +    ++   ++ + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHG-LTPQQ-------VVAIASNSGGKQALETVQRLLPV 298

Query: 81  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140
             +   +        +   V+ + S G              V  +   +  +        
Sbjct: 299 LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV------ 344

Query: 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
             +A+ S    K A    +  + +  +A  +
Sbjct: 345 --VAIASHDGGKQALETVQRLLPVLCQAHGL 373

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEI 80
              +Y  L+  +K+   +++ ++ ++    +               L G + R  +++  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALS-IKPDSAEI-------NNNYGWFLCGRLNRPAESMAY 99

Query: 81  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140
           + + +           A       + G    K+G+   AE+   R L            +
Sbjct: 100 FDKALADP-TYPTPYIA-----NLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQ 145

Query: 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
              A   LA  K   G   +A   +KK    ++      L
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 31/162 (19%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
           +G  Y      ++   + +R +              V     +      + +   AV + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLA-DAPDN-------VKVATVLGLTYVQVQKYDLAVPLL 99

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            +V           +       F LG      G+  +A   F   L +     KV+    
Sbjct: 100 IKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH---- 147

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180
                   ++A +    G  EEA+  +KKA   + +   + L
Sbjct: 148 -------RAIAFSYEQMGRHEEALPHFKKANE-LDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 22  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 81
            G  ++    Y +++++ ++V +  ++         V   L +       G   +  E+ 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYD-ADAFD-------VDVALHLGIAYVKTGAVDRGTELL 65

Query: 82  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 138
            R +          + D V     LG  +++  K   A  +  ++ +       V     
Sbjct: 66  ERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR---- 113

Query: 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
                    L  A    G  +EA++ +K AL 
Sbjct: 114 -------FRLGVALDNLGRFDEAIDSFKIALG 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 154 ANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 209
            + N  E   +    +  I       +  ++ D +M+++    A   +  GR +E     
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFF 59

Query: 210 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 269
               +             V +++ LAA Y   + F +A  L  +   +     G +D   
Sbjct: 60  RFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND--- 103

Query: 270 SFPMLHLGITLYHLNRDKEAEK 291
             P+ H G     L    +A++
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKE 125

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 21/184 (11%), Positives = 66/184 (35%), Gaps = 6/184 (3%)

Query: 6   DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 65
           +    +         ++ +      +YE  +L  ++++N   +       L +     +A
Sbjct: 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI--ENAIA 162

Query: 66  KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 125
            +    G  KK ++++ +++  LE     E  D+ +  ++       + +  ++    ++
Sbjct: 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV-RYNHAKALYLDSRYEESLYQVNK 221

Query: 126 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE-LYKKALRVIKDSNYMSLDDSI 184
            ++I  ++   +   +G                E  +E  YKKA          +  +++
Sbjct: 222 AIEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEAL 279

Query: 185 MENM 188
           +  +
Sbjct: 280 VNKI 283

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 16/116 (13%)

Query: 56  LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 115
           +   + +     +  +    +A   +  V    +     E A       SLG    +  K
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVC---QKEPEREEA-----WRSLGLTQAENEK 66

Query: 116 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
              A    +    +        D +      +LA +     NA  A+   +  L  
Sbjct: 67  DGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	100.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	100.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.98
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.98
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.84
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.66
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.66
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.65
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.62
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.6
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.59
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.41
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.36
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.32
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.31
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.28
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.18
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.11
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.85
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.78
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.7
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.6
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.57
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.54
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.44
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.22
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.21
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.12
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.08
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.42
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.24
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.63
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.51
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.36
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.91
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.82
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.65
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.62
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.46
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.14
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.98
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.95
2o8p_A	227	14-3-3 domain containing protein; signaling protei	94.73
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.49
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.04
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.93
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.58
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.44
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.11
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.88
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.84
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.52
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	87.38
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	86.2
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	85.64
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	83.9
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.38

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.6e-34  Score=244.72  Aligned_cols=341  Identities=17%  Similarity=0.140  Sum_probs=296.0

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   93 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   93 (394)
                      ..+..+..+|..+...|++++|+.+|++++...    +.+.+....++..+|.++...|++++|+.++++++.+..... 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-   81 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-   81 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-
Confidence            345667899999999999999999999999872    333445678899999999999999999999999999987753 


Q ss_pred             CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC----------------
Q 016124           94 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN----------------  157 (394)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  157 (394)
                       +.+....++..+|.++...|++++|+.++++++.+.+..  .+.+....++..+|.++...|+                
T Consensus        82 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           82 -DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             -ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence             566778899999999999999999999999999998875  2456677899999999999999                


Q ss_pred             ----HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 016124          158 ----AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  233 (394)
Q Consensus       158 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (394)
                          +++|+.++++++.+....    ++++....++.++|.++...|++++|+.++++++.+.....  +.+....++.+
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~  232 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHH
Confidence                999999999999998764    46677788899999999999999999999999999887643  44556778999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 016124          234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE  313 (394)
Q Consensus       234 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  313 (394)
                      +|.++...|++++|+.++++++.+....  ++.+....++..+|.++...|++++|+.++++++.+....  ++.+....
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            9999999999999999999999987664  3445567788999999999999999999999999988775  44566788


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                      ++..+|.++...|+++ +|+.++++++++....  ...+....++..++.++...|+...+.
T Consensus       309 ~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~  367 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHD-QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTN  367 (406)
T ss_dssp             HHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence            8999999999999999 9999999999998875  345778889999999999999875543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-34  Score=248.45  Aligned_cols=309  Identities=18%  Similarity=0.233  Sum_probs=235.4

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |..+.++..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++..     
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----  130 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----  130 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            444556666777777777777777777776654        1333445666777777777777777777776664     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         .|....++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++++.
T Consensus       131 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  199 (388)
T 1w3b_A          131 ---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD  199 (388)
T ss_dssp             ---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence               3445566677777777777777777777777765        34445677788888888888888888888887753


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                             |+.   ..++.++|.++...|++++|+..+++++.+        .|....++.++|.++...|++++|+..++
T Consensus       200 -------p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  261 (388)
T 1w3b_A          200 -------PNF---LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             -------TTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                   222   345678888888888888888888888775        35556778889999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                      +++.+        .|....++..+|.++...|++++|+..++++++..        |....++..++.++...|+++ +|
T Consensus       262 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~-~A  324 (388)
T 1w3b_A          262 RAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIE-EA  324 (388)
T ss_dssp             HHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HH
T ss_pred             HHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHH-HH
Confidence            98873        46667788999999999999999999999998753        334557889999999999999 99


Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +..+++++++        .|+...++..+|.++...|++++|+..|++++++.+..
T Consensus       325 ~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          325 VRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9999998753        35556788999999999999999999999998876554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.3e-33  Score=241.99  Aligned_cols=309  Identities=17%  Similarity=0.178  Sum_probs=264.1

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|....++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   96 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL----   96 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----
Confidence            4555567788999999999999999999998875        2455678999999999999999999999999886    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                          .|....++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++..
T Consensus        97 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           97 ----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                4666778999999999999999999999999876        3445567889999999999999999999999885


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      .       |+.   ..++.++|.++...|++++|+..+++++.+        +|....++..+|.++...|++++|+..+
T Consensus       165 ~-------p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~  226 (388)
T 1w3b_A          165 Q-------PNF---AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY  226 (388)
T ss_dssp             C-------TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             C-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3       222   446688999999999999999999999885        4566778999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      ++++.+        .|....++..+|.++...|++++|+..++++++..        |....++..+|.++...|+++ +
T Consensus       227 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~-~  289 (388)
T 1w3b_A          227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSVA-E  289 (388)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCHH-H
T ss_pred             HHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHH-H
Confidence            999884        45667888999999999999999999999998742        344457899999999999999 9


Q ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          332 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       332 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      |+..|+++++..        |....++..+|.++...|++++|+..|++++++.+.
T Consensus       290 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  337 (388)
T 1w3b_A          290 AEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            999999999762        334567889999999999999999999999876443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-31  Score=230.38  Aligned_cols=314  Identities=17%  Similarity=0.148  Sum_probs=275.0

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+..+..+|..+...|++++|+.+|++++++.    ..+......++..+|.++...|++++|+.++++++.+.+...
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            5667778899999999999999999999999872    233345667899999999999999999999999999987753


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC---------------
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------------  157 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  157 (394)
                        +.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|+               
T Consensus       121 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          121 --DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             --CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence              567788899999999999999999999999999998775  3567788899999999999999               


Q ss_pred             --HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 016124          158 --AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  235 (394)
Q Consensus       158 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  235 (394)
                        +++|+.++++++++....    .+++....++.++|.++...|++++|+.++++++.+.....  +......++.++|
T Consensus       197 ~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la  270 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDL----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHH
Confidence              999999999999988764    45567778899999999999999999999999999887753  3445667899999


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 016124          236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  315 (394)
Q Consensus       236 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  315 (394)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|++++|+.++++++.+....  .+.+....++
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  346 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC  346 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence            99999999999999999999987765  3344567788999999999999999999999999998776  4556777889


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          316 DCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       316 ~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      ..+|.++...|+++ +|..++++++++.++
T Consensus       347 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          347 WSLGNAHSAIGGHE-RALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhccHH-HHHHHHHHHHHHHhh
Confidence            99999999999999 999999999998655

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=2.8e-31  Score=229.35  Aligned_cols=317  Identities=15%  Similarity=0.084  Sum_probs=276.1

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      +.....+..+|..+...|++++|+..|+++++..    ..+......++..+|.++...|++++|+.++++++.+.+.. 
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            5667778899999999999999999999999871    12222345789999999999999999999999999998775 


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC-------------
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------  201 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  201 (394)
                       .+.+....++..+|.++...|++++|+.++++++++....    .+.+....++.++|.++...|+             
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  194 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD  194 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence             3567888999999999999999999999999999998764    4567778889999999999999             


Q ss_pred             ----hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 016124          202 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  277 (394)
Q Consensus       202 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  277 (394)
                          +++|+.++++++.+.....  +.+....++.++|.++...|++++|+.++++++.+....  .+......++..+|
T Consensus       195 a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la  270 (411)
T 4a1s_A          195 VKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHH
Confidence                9999999999999887664  456677899999999999999999999999999987764  33445566889999


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 016124          278 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  357 (394)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  357 (394)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|+++ +|+.++++++.+....  .+.+....+
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~  345 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIAQEL--GDRIGEARA  345 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHC--CChHHHHHH
Confidence            99999999999999999999998765  445566788999999999999999 9999999999998775  345677889


Q ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124          358 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                      +..+|.++...|++++|..+|++++.+.++.+.
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999887764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.6e-31  Score=227.15  Aligned_cols=313  Identities=15%  Similarity=0.109  Sum_probs=272.7

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+..+...|..+...|++++|+.++++++...    +.+.+....++..+|.++...|++++|+.++++++.+.+..  .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   81 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   81 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence            34567889999999999999999999999871    22223346789999999999999999999999999998775  3


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC---------------
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------  201 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  201 (394)
                      +.+....++..+|.++...|++++|+.++++++++.+..    ++++....++.++|.++...|+               
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence            567788899999999999999999999999999998764    4556677889999999999999               


Q ss_pred             -----hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 016124          202 -----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  276 (394)
Q Consensus       202 -----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  276 (394)
                           +++|+.++++++.+.....  +.+....++.++|.++...|++++|+.++++++.+....  ++.+....++..+
T Consensus       158 ~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l  233 (406)
T 3sf4_A          158 EVRDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence                 9999999999999887753  456778899999999999999999999999999987764  3445566789999


Q ss_pred             HHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 016124          277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML  356 (394)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  356 (394)
                      |.++...|++++|+.++++++.+....  ++++....++..+|.++...|+++ +|+.++++++++....  .+.+....
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            999999999999999999999988764  455666788999999999999999 9999999999988774  34567788


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          357 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      ++..+|.++...|++++|..++++++.+.++.
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999997665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=100.00  E-value=1e-30  Score=219.67  Aligned_cols=313  Identities=15%  Similarity=0.112  Sum_probs=267.7

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ...+...|..+...|++++|+..+++++...    ..+.+....++..+|.++...|++++|+.++++++.+.+..  .+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   78 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD   78 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence            3456778999999999999999999999871    12223346789999999999999999999999999998775  35


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC----------------
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------------  201 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  201 (394)
                      .+....++..+|.++...|++++|+.++++++++.+..    ++++....++..+|.++...|+                
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED  154 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence            67778899999999999999999999999999998764    4566677888999999999999                


Q ss_pred             ----hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 016124          202 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  277 (394)
Q Consensus       202 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  277 (394)
                          +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....  ++.+....++..+|
T Consensus       155 a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          155 VRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence                9999999999998877654  456677889999999999999999999999999987765  34455667899999


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 016124          278 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  357 (394)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  357 (394)
                      .++...|++++|+.++++++.+....  ++++....++..+|.++...|+++ +|+.++++++.+....  .+.+....+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~~  305 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--KDRIGEGRA  305 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence            99999999999999999999988764  455666788999999999999999 9999999999988775  335677788


Q ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          358 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      +..+|.++...|++++|..++++++.+.++.+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999988765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=100.00  E-value=1.4e-30  Score=218.73  Aligned_cols=311  Identities=19%  Similarity=0.167  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...+...|..+...|++++|+.+|+++++..    +.+.+....++..+|.++...|++++|+.++++++.+.....  +
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~   78 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D   78 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence            4567889999999999999999999999862    333445678899999999999999999999999999987763  5


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC------------------
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN------------------  157 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------  157 (394)
                      .+....++..+|.++...|++++|+.++++++.+.+..  .+.+....++..+|.++...|+                  
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~  156 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR  156 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence            56778899999999999999999999999999998774  3456677889999999999999                  


Q ss_pred             --HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 016124          158 --AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  235 (394)
Q Consensus       158 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  235 (394)
                        +++|+.++++++.+.+..    ++.+....++.++|.++...|++++|+.++++++.+.....  +.+....++..+|
T Consensus       157 ~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~  230 (338)
T 3ro2_A          157 NALQAAVDLYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHH
Confidence              999999999999988764    45667778889999999999999999999999999887753  4455677899999


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 016124          236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  315 (394)
Q Consensus       236 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  315 (394)
                      .++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|..++++++.+....  .+.+....++
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~  306 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRAC  306 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            99999999999999999999987664  3445567788999999999999999999999999998775  3456677889


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          316 DCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       316 ~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      ..+|.++...|+++ +|..++++++++.++
T Consensus       307 ~~la~~~~~~g~~~-~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          307 WSLGNAYTALGNHD-QAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHTCHH-HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCChH-HHHHHHHHHHHHHHh
Confidence            99999999999999 999999999987654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=241.76  Aligned_cols=350  Identities=11%  Similarity=0.022  Sum_probs=226.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ++..+.+++.+|.++..+|++++|+.+|++++++.+...+. .+|..+.++.++|.+|..+|++++|+.++++++.+.+.
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            44456778999999999999999999999999998765432 35667788999999999999999999999999999988


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHh--CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                      ..++..+..+.++..+|.++...  +++++|+.+|++++.+     .|+++.....+..+...+...++.++|+..++++
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a  201 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA  201 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            87777777888899999887765  4799999999999987     3344433222222222234456666667666666


Q ss_pred             HHHHHhcc-------------------------------cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          169 LRVIKDSN-------------------------------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       169 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      +++.....                               ...++.   ..++.++|.+|...|++++|+..++++++.  
T Consensus       202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--  276 (472)
T 4g1t_A          202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--  276 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--
Confidence            65421100                               001111   223455666666666666666666666653  


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcc-------------------cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSK-------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  278 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g-------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  278 (394)
                            +|....++.++|.+|...+                   .+++|+..+++++.+        +|....++..+|.
T Consensus       277 ------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~  342 (472)
T 4g1t_A          277 ------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILAS  342 (472)
T ss_dssp             ------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHH
T ss_pred             ------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHH
Confidence                  3445555666666654321                   233444444444432        3455566788999


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHHh------------
Q 016124          279 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ-TRLGEDDTKLLELLKRVLRIQER------------  345 (394)
Q Consensus       279 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~A~~~~~~al~~~~~------------  345 (394)
                      ++...|++++|+.+|++++.+.     +++......+..+|.+. ...|+++ +|+..|++++++...            
T Consensus       343 ~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~Ai~~y~kal~i~~~~~~~~~~~~~l~  416 (472)
T 4g1t_A          343 LHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCED-KAIHHFIEGVKINQKSREKEKMKDKLQ  416 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            9999999999999999998743     33333344566677654 4678888 999999999865211            


Q ss_pred             -----hcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhh
Q 016124          346 -----EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  392 (394)
Q Consensus       346 -----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  392 (394)
                           .+ ..+|..+.++..+|.+|...|++++|+++|++++++.+......
T Consensus       417 ~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          417 KIAKMRL-SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence                 11 11345567899999999999999999999999999988876543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2e-31  Score=233.07  Aligned_cols=320  Identities=16%  Similarity=0.131  Sum_probs=261.3

Q ss_pred             ccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124            7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus         7 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .+-..+|..+..+..+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..++++++
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            334567888899999999999999999999999999875        233467889999999999999999999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH------------HHHHHHHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA------------MCSLAHAKCA  154 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~  154 (394)
                      .        .|....++..+|.++...|++++|+..|++++..     .++.+....+            +..+|.++..
T Consensus        89 ~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  155 (450)
T 2y4t_A           89 L--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFG  155 (450)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7        4556788999999999999999999999999875     2233311122            4455888999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 016124          155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  234 (394)
Q Consensus       155 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (394)
                      .|++++|+..++++++...       ..   ..++..+|.++...|++++|+..+++++...        |....++..+
T Consensus       156 ~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l  217 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVCV-------WD---AELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKI  217 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-------CC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence            9999999999999998632       22   3456889999999999999999999998762        4456789999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH------------HHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          235 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH------------LGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       235 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                      |.++...|++++|+..+++++.+        .|.....+..            +|.++...|++++|+.+|++++.+.  
T Consensus       218 ~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--  287 (450)
T 2y4t_A          218 STLYYQLGDHELSLSEVRECLKL--------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--  287 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence            99999999999999999999874        2333333333            3999999999999999999998853  


Q ss_pred             HcCCCChhH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124          303 AFGKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  381 (394)
Q Consensus       303 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  381 (394)
                         ++++.. ...+..+|.++...|+++ +|+..+++++++        .|....++..+|.++...|++++|...|+++
T Consensus       288 ---p~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          288 ---PSIAEYTVRSKERICHCFSKDEKPV-EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             ---CSSHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---CcchHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence               444432 567889999999999999 999999999975        2344578999999999999999999999999


Q ss_pred             HHHHHH
Q 016124          382 SNLRMK  387 (394)
Q Consensus       382 ~~~~~~  387 (394)
                      +++.++
T Consensus       356 l~~~p~  361 (450)
T 2y4t_A          356 QEHNEN  361 (450)
T ss_dssp             HTTSSS
T ss_pred             HHhCcc
Confidence            887554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=9.8e-31  Score=221.75  Aligned_cols=315  Identities=15%  Similarity=0.125  Sum_probs=258.5

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      +..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..        
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            4678899999999999999999999999852        334568899999999999999999999999987        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH------------HHHHHHCCCHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL------------AHAKCANGNAEEAVE  163 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~  163 (394)
                      .|....++..+|.++...|++++|+..+++++...     +.......++..+            |.++...|++++|+.
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  141 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT  141 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            45556889999999999999999999999998752     1000333344433            899999999999999


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHccc
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  243 (394)
                      .++++++..+       +.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|+
T Consensus       142 ~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          142 FLDKILEVCV-------WD---AELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCC-------Cc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence            9999998632       22   345688999999999999999999999864        45667889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcchHH---------HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHH
Q 016124          244 FVEAERLLRICLDIMTKTVGPDDQSISFP---------MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGE  313 (394)
Q Consensus       244 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~  313 (394)
                      +++|+..+++++...     ++++.....         ...+|.++...|++++|+..+++++...     ++.+. ...
T Consensus       204 ~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~  273 (359)
T 3ieg_A          204 HELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVR  273 (359)
T ss_dssp             HHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHH
Confidence            999999999999742     232222211         2345889999999999999999998854     44433 335


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      .+..+|.++...|+++ +|+..++++++.        .|....++..+|.++...|++++|...|++++++.++.
T Consensus       274 ~~~~la~~~~~~~~~~-~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          274 SKERICHCFSKDEKPV-EAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHccCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            6778999999999999 999999999986        23346688999999999999999999999999877654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=100.00  E-value=2.2e-28  Score=208.98  Aligned_cols=352  Identities=8%  Similarity=0.015  Sum_probs=270.8

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH--HHHHHHhhchhHHH-----------H
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--AKVLGSIGRAKKAV-----------E   79 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~   79 (394)
                      +.......+-.......+++++|...++++.+.....  ..++... .++.+  .+.....+.+..+.           .
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            3344444555666778999999999999987765432  1223333 22222  22333445555555           5


Q ss_pred             HHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHH
Q 016124           80 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  159 (394)
Q Consensus        80 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  159 (394)
                      .+++.-......   +.......++..|.++...|++++|+.++++++.+.+..  ++.+..+.++..+|.+|...|+++
T Consensus        86 ~~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~  160 (383)
T 3ulq_A           86 LLLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTY  160 (383)
T ss_dssp             HHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence            555432221110   011112345568999999999999999999999886653  455668899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          160 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       160 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                      +|+.++++++++.++.   +...+....++.++|.++...|++++|+.++++++.+.+...  +.+..+.++.++|.+|.
T Consensus       161 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          161 FSMDYARQAYEIYKEH---EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHHHHTC---STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHH
Confidence            9999999999999874   233677788999999999999999999999999999987753  45667789999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      ..|++++|+.++++++.+....  .+.|....++.++|.++...|++++|..++++++.+....   +.+.....+..++
T Consensus       236 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~  310 (383)
T 3ulq_A          236 SQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLK  310 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence            9999999999999999987765  2226778899999999999999999999999999998775   3344444477899


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      .++...|+.     ..+++++..+++.  ...+....++..+|.+|...|++++|..+|++++.+.+++.
T Consensus       311 ~~~~~~~~~-----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~  373 (383)
T 3ulq_A          311 SLYLSGPDE-----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ  373 (383)
T ss_dssp             HHHTSSCCH-----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred             HHHhCCCcH-----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence            999998873     3556666666654  45678888999999999999999999999999999887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.98  E-value=4.9e-29  Score=225.87  Aligned_cols=324  Identities=12%  Similarity=0.043  Sum_probs=257.3

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh------------------------------------------
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY------------------------------------------   50 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------   50 (394)
                      +....+++.+|.+|...|++++|+..|++++.......                                          
T Consensus       197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  276 (597)
T 2xpi_A          197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM  276 (597)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence            45678899999999999999999999999986521100                                          


Q ss_pred             ---------------------CCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHH
Q 016124           51 ---------------------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  109 (394)
Q Consensus        51 ---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  109 (394)
                                           ....|....++..++.++...|++++|+..|++++..        .|....++..++.+
T Consensus       277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  348 (597)
T 2xpi_A          277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLAS  348 (597)
T ss_dssp             TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHH
T ss_pred             HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHH
Confidence                                 0000122445666777777788888888888777754        23345567777888


Q ss_pred             HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHH
Q 016124          110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  189 (394)
Q Consensus       110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  189 (394)
                      +...|++++|...+++++..        .|....++..+|.+|...|++++|+.+|++++++..       ..   ..++
T Consensus       349 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~---~~~~  410 (597)
T 2xpi_A          349 LHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-------QF---GPAW  410 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CC---HHHH
Confidence            88888888888888777754        234456788899999999999999999999988532       22   3456


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  269 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  269 (394)
                      ..++.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.+|+++++.        .|..
T Consensus       411 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~  474 (597)
T 2xpi_A          411 IGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYD  474 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            88999999999999999999998864        3344567889999999999999999999999874        3445


Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  348 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~  348 (394)
                      ..++..+|.++...|++++|+..|+++++.....  +..|. ...++..++.++...|+++ +|+..++++++..     
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-----  546 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS-----  546 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS-----
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhC-----
Confidence            6788999999999999999999999999876543  23344 3788999999999999999 9999999999752     


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          349 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                         |....++..++.+|...|++++|..+|++++++.++..
T Consensus       547 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          547 ---TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             ---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence               33357889999999999999999999999999876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.98  E-value=1.4e-29  Score=226.58  Aligned_cols=325  Identities=14%  Similarity=0.100  Sum_probs=257.7

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHH---------
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH---------   82 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------   82 (394)
                      +|....++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+..|+         
T Consensus        55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  126 (537)
T 3fp2_A           55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFD  126 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Confidence            34556778889999999999999999999998762        3445678899999999999999988763         


Q ss_pred             --------------------------------------------------------------------------------
Q 016124           83 --------------------------------------------------------------------------------   82 (394)
Q Consensus        83 --------------------------------------------------------------------------------   82 (394)
                                                                                                      
T Consensus       127 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  206 (537)
T 3fp2_A          127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA  206 (537)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             -------------HHHHHHHHhcC--CCCcc----hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124           83 -------------RVITILELNRG--TESAD----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  143 (394)
Q Consensus        83 -------------~al~~~~~~~~--~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  143 (394)
                                   +++..+++...  ++++.    .+.++..+|.++...|++++|+..+++++..        .|. ..
T Consensus       207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~  277 (537)
T 3fp2_A          207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PN  277 (537)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-ch
Confidence                         22222222211  11111    2446788899999999999999999999886        233 56


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  223 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  223 (394)
                      ++..+|.++...|++++|+.+++++++...       +.   ..++..+|.++...|++++|+..+++++..        
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------  339 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLNP-------EY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------  339 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccCC-------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------
Confidence            788999999999999999999999998642       22   345688999999999999999999999885        


Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++......
T Consensus       340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            2344467889999999999999999999999984        35556788999999999999999999999999987543


Q ss_pred             cCCCChhHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124          304 FGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  373 (394)
Q Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~----------g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  373 (394)
                        +........+..++.++...          |+++ +|+..|+++++.        .|....++..+|.++...|++++
T Consensus       412 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          412 --EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN-AAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             --SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             --hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHH
Confidence              12222233467788899998          9999 999999999986        23345778999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHH
Q 016124          374 KFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       374 A~~~~~~a~~~~~~~~~  390 (394)
                      |..+|++++++.+....
T Consensus       481 A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          481 AIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHHhCCCcHH
Confidence            99999999998776544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=7.5e-30  Score=216.84  Aligned_cols=298  Identities=15%  Similarity=0.113  Sum_probs=231.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +++.....++.+|..+...|++++|+.+|++++...        |....++..+|.++...|++++|+..|++++.+   
T Consensus        60 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---  128 (365)
T 4eqf_A           60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL---  128 (365)
T ss_dssp             CTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence            333445668899999999999999999999999862        344678899999999999999999999999987   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--RVGMAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                           .|....++..+|.++...|++++|+.++++++.+.+........  .....+..+|.++...|++++|+.+++++
T Consensus       129 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  203 (365)
T 4eqf_A          129 -----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA  203 (365)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence                 45567889999999999999999999999999874432111000  12344566799999999999999999999


Q ss_pred             HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124          169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                      ++....     ...   ..++.++|.++...|++++|+.++++++..        .|....++.++|.++...|++++|+
T Consensus       204 l~~~p~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~  267 (365)
T 4eqf_A          204 AHQNGD-----MID---PDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAV  267 (365)
T ss_dssp             HHHSCS-----SCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCcC-----ccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            987422     002   345688999999999999999999999986        3556778999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHH
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTR  324 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~  324 (394)
                      ..|++++.+        +|....++..+|.++...|++++|+.++++++.+.....++.++.    ...++..++.++..
T Consensus       268 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          268 EAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence            999999985        466688999999999999999999999999999885543332221    25678899999999


Q ss_pred             hCCCchHHHHHHHHHHHHHHhhcCC
Q 016124          325 LGEDDTKLLELLKRVLRIQEREFGS  349 (394)
Q Consensus       325 ~g~~~~~A~~~~~~al~~~~~~~~~  349 (394)
                      .|+.+ .+....++.++.+.+.++.
T Consensus       340 ~g~~~-~a~~~~~~~l~~~~~~~~~  363 (365)
T 4eqf_A          340 MDQPE-LFQAANLGDLDVLLRAFNL  363 (365)
T ss_dssp             HTCHH-HHHHHHTTCCGGGTTTTTC
T ss_pred             cCcHH-HHHHHHHhhHHHHHHhcCC
Confidence            99998 8888887777666555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=2.6e-29  Score=224.70  Aligned_cols=322  Identities=17%  Similarity=0.173  Sum_probs=262.5

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+..+..+|..++..|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..     
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----   88 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI-----   88 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            4467889999999999999999999999999862        344578999999999999999999999999987     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHH------------------------------------------------
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFS------------------------------------------------  124 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------------------------  124 (394)
                         .|....++..+|.++...|++++|+..|+                                                
T Consensus        89 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~  165 (537)
T 3fp2_A           89 ---KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT  165 (537)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred             ---CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence               45667889999999999999999988763                                                


Q ss_pred             ------------------------------------------------------HHHHHHHHhhC--CCchH----HHHH
Q 016124          125 ------------------------------------------------------RILKIYTKVYG--ENDGR----VGMA  144 (394)
Q Consensus       125 ------------------------------------------------------~al~~~~~~~~--~~~~~----~~~~  144 (394)
                                                                            +++..+++...  ++++.    .+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  245 (537)
T 3fp2_A          166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA  245 (537)
T ss_dssp             HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence                                                                  12222222211  22222    2556


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      +..+|.++...|++++|+..+++++...       ++    ..++..+|.++...|++++|+.++++++..        .
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~  306 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLH-------PT----PNSYIFLALTLADKENSQEFFKFFQKAVDL--------N  306 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-------CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------C
Confidence            8889999999999999999999999852       23    345688999999999999999999999875        3


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                      |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++...    
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----  374 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----  374 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            556678999999999999999999999999984        34556788999999999999999999999998863    


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh----------cCchhh
Q 016124          305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL----------GRKEEK  374 (394)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A  374 (394)
                       ++   ...++..+|.++...|+++ +|+..|+++++.......  .......+..+|.++...          |++++|
T Consensus       375 -~~---~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A  447 (537)
T 3fp2_A          375 -PT---LPEVPTFFAEILTDRGDFD-TAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA  447 (537)
T ss_dssp             -TT---CTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred             -CC---ChHHHHHHHHHHHHhCCHH-HHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence             33   3457889999999999999 999999999998755322  112234467788899999          999999


Q ss_pred             hhhHHHHHHHHHHH
Q 016124          375 FPLKKRLSNLRMKY  388 (394)
Q Consensus       375 ~~~~~~a~~~~~~~  388 (394)
                      +.+|++++.+.+..
T Consensus       448 ~~~~~~a~~~~p~~  461 (537)
T 3fp2_A          448 IKLLTKACELDPRS  461 (537)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999876543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=9.9e-30  Score=213.04  Aligned_cols=298  Identities=12%  Similarity=0.150  Sum_probs=246.0

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...+..+|..++..|++++|+..+++++...        |....++..++.++...|++++|+..+++++..        
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------   85 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------   85 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence            3457789999999999999999999998752        233445667889999999999999999999886        


Q ss_pred             CcchHhhhHhHHHHHHHhC-cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           96 SADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      .|....++..+|.++...| ++++|+.++++++..        .|....++..+|.++...|++++|+..++++++....
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  157 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG  157 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence            4556678999999999999 999999999999875        3444567889999999999999999999999987532


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                             .   ..++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..++++
T Consensus       158 -------~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          158 -------C---HLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             -------C---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------c---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                   1   233567999999999999999999999874        4556788999999999999999999999999


Q ss_pred             HHHHHhhcCCCC-CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124          255 LDIMTKTVGPDD-QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  333 (394)
Q Consensus       255 ~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~  333 (394)
                      +.+......... +....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|+++ +|+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~-~A~  290 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFE-NAV  290 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHH-HHH
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHH-HHH
Confidence            997765433222 5567789999999999999999999999999864        334457899999999999999 999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-HHhcCch
Q 016124          334 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYL-DKLGRKE  372 (394)
Q Consensus       334 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  372 (394)
                      .++++++++        .|+...++..++.++ ...|+.+
T Consensus       291 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          291 DYFHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            999998864        233456788889888 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.9e-30  Score=220.76  Aligned_cols=319  Identities=16%  Similarity=0.085  Sum_probs=243.2

Q ss_pred             HHHHHhhhchHHHHH-HHHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124           23 GSMYSTLENYEKSML-VYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  100 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  100 (394)
                      +.++...|++++|+. .|++++.+.     ++.| .....+..+|.++...|++++|+..+++++..        .|...
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~   98 (368)
T 1fch_A           32 AEAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHM   98 (368)
T ss_dssp             --------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred             chhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence            346777899999999 888887652     2222 23456788999999999999999999999875        45667


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++...........
T Consensus        99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  170 (368)
T 1fch_A           99 EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT  170 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            88999999999999999999999999987        3444568899999999999999999999999986432100000


Q ss_pred             c------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          181 D------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       181 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                      .      ..........++.++ ..|++++|+..+++++..        .|.  ...++..+|.++...|++++|+..++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  241 (368)
T 1fch_A          171 PAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT  241 (368)
T ss_dssp             ---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            0      000011112466666 899999999999999875        233  56788999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                      +++.+        .|....++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|+++ +|
T Consensus       242 ~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~-~A  304 (368)
T 1fch_A          242 AALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHR-EA  304 (368)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH-HH
T ss_pred             HHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHH-HH
Confidence            99985        35567789999999999999999999999998853        444568899999999999999 99


Q ss_pred             HHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          333 LELLKRVLRIQEREFGS---ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +..|++++.+.....++   .++....++..+|.++...|++++|..+++++++..++.
T Consensus       305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence            99999999987653221   122336789999999999999999999999999876654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.6e-28  Score=203.92  Aligned_cols=287  Identities=21%  Similarity=0.240  Sum_probs=235.2

Q ss_pred             cccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 016124            4 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   83 (394)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   83 (394)
                      ..+..++++|..+.++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.++...|++++|+.++++
T Consensus        15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999998887777889999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           84 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      ++.+.+...+.+.+....++..+|.++...|++++|+.++++++.+.....+++++....++..+|.++...|++++|+.
T Consensus        95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A           95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999888777788899999999999999999999999999999999888778889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCCccH------HHHHHHHHH
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSF------VTHLLNLAA  236 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~------~~~~~~la~  236 (394)
                      ++++++++....  .+++++....++..+|.++...|++++|+.++++++....... +...+..      ...+..++.
T Consensus       175 ~~~~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
T 3nf1_A          175 YYQRALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG  252 (311)
T ss_dssp             HHHHHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence            999999998764  4455677778889999999999999999999999998765432 1111111      222333444


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .+...+.+.+|...+.++..        .+|....++..+|.+|...|++++|+.++++++++.
T Consensus       253 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          253 KQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             -----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            44555566666666666554        467788899999999999999999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.97  E-value=9.7e-28  Score=204.98  Aligned_cols=272  Identities=8%  Similarity=-0.004  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..++..|..+...|++++|+.++++++.+.+..  ++.+..+.++..+|.++...|++++|+.++.+++++.+.. +...
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  180 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN  180 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence            345668999999999999999999999886653  2455678899999999999999999999999999998875 2226


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +..+.++.++|.+|...|++++|+.++++++++.++.    ++++....++.++|.+|...|++++|+.++++++.+.+.
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            7788899999999999999999999999999998864    567777889999999999999999999999999999876


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      ..  +.|....++.++|.++...|++++|..++++++.+....   .++.....+..+|.++...|++    ..+++++.
T Consensus       257 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~  327 (383)
T 3ulq_A          257 SN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----EAIQGFFD  327 (383)
T ss_dssp             TT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH----HHHHHHHH
T ss_pred             hc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHH
Confidence            53  237778999999999999999999999999999988765   2334444467899999999995    44555555


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCC
Q 016124          299 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  349 (394)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~  349 (394)
                      ..++.  ...+....++..+|.++...|+++ +|..++++++++.+++...
T Consensus       328 ~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~i~~~  375 (383)
T 3ulq_A          328 FLESK--MLYADLEDFAIDVAKYYHERKNFQ-KASAYFLKVEQVRQLIQGG  375 (383)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTSCSSC
T ss_pred             HHHHC--cCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhcc
Confidence            55554  456777888999999999999999 9999999999998876543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-28  Score=217.57  Aligned_cols=325  Identities=14%  Similarity=0.079  Sum_probs=267.0

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      ...+..+..+|..++..|++++|+..|++++...     ++    ..++..+|.++...|++++|+..++++++.     
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----   68 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----   68 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence            3567889999999999999999999999999862     22    567889999999999999999999999986     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh-----------------------h---------------
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-----------------------Y---------------  134 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~---------------  134 (394)
                         .|....++..+|.++...|++++|+..|++++......                       .               
T Consensus        69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  145 (514)
T 2gw1_A           69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST  145 (514)
T ss_dssp             ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred             ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence               46677899999999999999999999999987642100                       0               


Q ss_pred             ---------CC------------------------CchHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcccC
Q 016124          135 ---------GE------------------------NDGRVGMAMCSLAHAKCA---NGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus       135 ---------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                               .+                        ..|.....+..+|.++..   .|++++|+..++++++..+.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                     00                        001225566777887776   899999999999999954322101


Q ss_pred             CCc----hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          179 SLD----DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       179 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                      .++    .+....++..+|.++...|++++|+..+++++..        .|. ..++..+|.++...|++++|+..++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            122    2566778899999999999999999999999875        344 788999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124          255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  334 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~  334 (394)
                      +..        .|....++..+|.++...|++++|+..+++++...     +.   ...++..+|.++...|+++ +|+.
T Consensus       297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~-~A~~  359 (514)
T 2gw1_A          297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-----PE---NIFPYIQLACLAYRENKFD-DCET  359 (514)
T ss_dssp             HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----SS---CSHHHHHHHHHTTTTTCHH-HHHH
T ss_pred             hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----hh---hHHHHHHHHHHHHHcCCHH-HHHH
Confidence            873        45567788999999999999999999999998743     33   3457889999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124          335 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       335 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      .++++++..        |....++..+|.++...|++++|+.+|++++.+.+..
T Consensus       360 ~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          360 LFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            999998752        2234678899999999999999999999999887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-28  Score=202.81  Aligned_cols=285  Identities=22%  Similarity=0.220  Sum_probs=233.6

Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      .++++|....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.++...|++++|+.++++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999988877778899999999999999999999999999999998


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      .+..  .+++++....++.++|.++...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.++
T Consensus        99 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A           99 REKT--LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHH--hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7664  33456777888999999999999999999999999999988877788899999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH-cCCCChh------HHHHHHHHHHHHHH
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLP------VGEALDCLVSIQTR  324 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~------~~~~~~~l~~~~~~  324 (394)
                      ++++.+.....+++++....++..+|.++...|++++|+.++++++...... ++...+.      ....+..++..+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            9999998888777788889999999999999999999999999999876542 1111111      12334444555556


Q ss_pred             hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          325 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       325 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .+.+. +|...++++..        .+|....++..+|.+|...|++++|..+|++++++.++
T Consensus       257 ~~~~~-~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFG-EYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSC-CCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHH-HHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            66666 66666766653        56888999999999999999999999999999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.97  E-value=3.2e-27  Score=201.25  Aligned_cols=341  Identities=12%  Similarity=0.036  Sum_probs=258.6

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH--HHHHhhchhHHH---------HHHHHHHHHHHHhcC
Q 016124           25 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK--VLGSIGRAKKAV---------EIYHRVITILELNRG   93 (394)
Q Consensus        25 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~   93 (394)
                      .+...+++++|...++++........  .++... .++.+-.  .....+.+..+.         ..+++.-......  
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--   95 (378)
T 3q15_A           21 KMIRQFSVPDAEILKAEVEQDIQQME--EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--   95 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence            34789999999999998866543321  222322 3333222  222334444443         4444322111110  


Q ss_pred             CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           94 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                       ++......++..|..+...|++++|+.+|++++.+....  ++.+..+.++.++|.+|...|++++|+.++++++++.+
T Consensus        96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  172 (378)
T 3q15_A           96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ  172 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             112223356778999999999999999999999887653  35677889999999999999999999999999999988


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  253 (394)
                      +.   +...+....++.++|.++...|++++|+.++++++.+.+...  +.+..+.++.++|.+|...|++++|+.++++
T Consensus       173 ~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          173 NH---PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             TS---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hC---CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            63   223556788899999999999999999999999999987653  3456778899999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124          254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  333 (394)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~  333 (394)
                      ++.+....   .+|....++..+|.++...|++++|..++++++.+....   +.+.....+..++.++...|+.     
T Consensus       248 al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~-----  316 (378)
T 3q15_A          248 AAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE-----  316 (378)
T ss_dssp             HHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH-----
T ss_pred             HHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH-----
Confidence            99988765   345568899999999999999999999999999987543   2344444567788888777762     


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHh
Q 016124          334 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  391 (394)
Q Consensus       334 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  391 (394)
                      ..+.+++..+++.  ...+.....+..+|.+|...|++++|..+|++++.+.+++.+.
T Consensus       317 ~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~  372 (378)
T 3q15_A          317 RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKG  372 (378)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            3455566555552  4567788889999999999999999999999999999987653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=6.8e-29  Score=210.94  Aligned_cols=288  Identities=14%  Similarity=0.002  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      .....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+      
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------  128 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------  128 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence            33456889999999999999999999999987        4566788999999999999999999999999987      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .|....++..+|.++...|++++|+.++++++++.................+..+|.++...|++++|+.++++++..
T Consensus       129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  206 (365)
T 4eqf_A          129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ  206 (365)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence              344467899999999999999999999999999754320000000012334566799999999999999999999986


Q ss_pred             HHHhhCCCCcc--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHH
Q 016124          216 TEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  293 (394)
Q Consensus       216 ~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (394)
                              .|.  ...++..+|.++...|++++|+..+++++.+        .|....++..+|.++...|++++|+..+
T Consensus       207 --------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          207 --------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             --------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                    233  5678899999999999999999999999985        4556788999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHHHHhc
Q 016124          294 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE----VMLTLKKVVSYLDKLG  369 (394)
Q Consensus       294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g  369 (394)
                      ++++.+.        |....++..+|.++...|+++ +|+.+|++++++.....++.++.    ...++..++.++...|
T Consensus       271 ~~al~~~--------p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          271 TRALEIQ--------PGFIRSRYNLGISCINLGAYR-EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHHC--------TTCHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHHhcC--------CCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            9999863        444678999999999999999 99999999999987755443322    3578899999999999


Q ss_pred             CchhhhhhHHHHHHH
Q 016124          370 RKEEKFPLKKRLSNL  384 (394)
Q Consensus       370 ~~~~A~~~~~~a~~~  384 (394)
                      +.+.+....++.+..
T Consensus       342 ~~~~a~~~~~~~l~~  356 (365)
T 4eqf_A          342 QPELFQAANLGDLDV  356 (365)
T ss_dssp             CHHHHHHHHTTCCGG
T ss_pred             cHHHHHHHHHhhHHH
Confidence            999998887775543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-29  Score=221.03  Aligned_cols=288  Identities=13%  Similarity=0.067  Sum_probs=237.3

Q ss_pred             HHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHhc--CCCC----cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124           58 VTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--GTES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  128 (394)
Q Consensus        58 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  128 (394)
                      ...+..+|.++..   .|++++|+..+++++...+...  .+++    |....++..+|.++...|++++|+..+++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5566777777776   8999999999999998654433  2222    56778999999999999999999999999998


Q ss_pred             HHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124          129 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  208 (394)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  208 (394)
                      .        .|. ..++..+|.++...|++++|+..+++++...       +..   ..++..+|.++...|++++|+..
T Consensus       266 ~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          266 L--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-------SNN---SSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             H--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------TTC---THHHHHHHHHHHHTTCTTHHHHH
T ss_pred             h--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------cCC---HHHHHHHHHHHHHhCCHHHHHHH
Confidence            6        233 7789999999999999999999999998753       222   23568899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHH
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  288 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  288 (394)
                      +++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++
T Consensus       327 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          327 FDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHH
Confidence            9999874        3444568889999999999999999999999874        34456788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 016124          289 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR---LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL  365 (394)
Q Consensus       289 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  365 (394)
                      |+..+++++......  +.......++..+|.++..   .|+++ +|+..+++++...        |....++..+|.++
T Consensus       391 A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~  459 (514)
T 2gw1_A          391 ALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFI-EATNLLEKASKLD--------PRSEQAKIGLAQMK  459 (514)
T ss_dssp             HHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHHHhC--------cccHHHHHHHHHHH
Confidence            999999999876321  1111123478899999999   99999 9999999999852        33456788999999


Q ss_pred             HHhcCchhhhhhHHHHHHHHHHHHHh
Q 016124          366 DKLGRKEEKFPLKKRLSNLRMKYKQK  391 (394)
Q Consensus       366 ~~~g~~~~A~~~~~~a~~~~~~~~~~  391 (394)
                      ...|++++|...|++++.+.++....
T Consensus       460 ~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          460 LQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999988765543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.4e-28  Score=209.24  Aligned_cols=287  Identities=17%  Similarity=0.168  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++..        
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------  127 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------  127 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence            556789999999999999999999999875        2344567889999999999999999999999987        


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHH-------------HHHHHHHHHHHHHCCCHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-------------GMAMCSLAHAKCANGNAEEAV  162 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~  162 (394)
                      .|....++..+|.++...|++++|+..+++++....     +.+..             ......++.++ ..|++++|+
T Consensus       128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~  201 (368)
T 1fch_A          128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK  201 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH
Confidence            455678899999999999999999999999998632     22211             11222566666 899999999


Q ss_pred             HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124          163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  242 (394)
Q Consensus       163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  242 (394)
                      ..++++++.....       . ...++..+|.++...|++++|+.++++++.+        .|....++..+|.++...|
T Consensus       202 ~~~~~a~~~~p~~-------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          202 ELFLAAVRLDPTS-------I-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHSTTS-------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCcCc-------c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcC
Confidence            9999999864321       0 1346688999999999999999999999886        3555678999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC---CChhHHHHHHHHH
Q 016124          243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK---DSLPVGEALDCLV  319 (394)
Q Consensus       243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~  319 (394)
                      ++++|+..+++++.+        .|....++..+|.++...|++++|+.++++++.+.....++   .++....++..+|
T Consensus       266 ~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~  337 (368)
T 1fch_A          266 QSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR  337 (368)
T ss_dssp             CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence            999999999999985        45667889999999999999999999999999987433111   1233467899999


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhcCC
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREFGS  349 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~  349 (394)
                      .++...|+++ +|...++++++.+.+.++.
T Consensus       338 ~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~  366 (368)
T 1fch_A          338 LALSMLGQSD-AYGAADARDLSTLLTMFGL  366 (368)
T ss_dssp             HHHHHHTCGG-GHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHhCChH-hHHHhHHHHHHHHHHhcCC
Confidence            9999999999 9999999999988776653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=6.3e-28  Score=210.94  Aligned_cols=292  Identities=13%  Similarity=0.104  Sum_probs=232.4

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|....++..+|.++...|++++|+..|+++++..        |....++..+|.++...|++++|+..|++++..    
T Consensus        56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  123 (450)
T 2y4t_A           56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----  123 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----
T ss_pred             CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            44557788999999999999999999999999862        334677899999999999999999999999864    


Q ss_pred             cCCCCcchH---hh------------hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124           92 RGTESADLV---LP------------LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus        92 ~~~~~~~~~---~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  156 (394)
                          .|...   .+            +..+|.++...|++++|+..+++++..        .|....++..+|.+|...|
T Consensus       124 ----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  191 (450)
T 2y4t_A          124 ----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEG  191 (450)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             ----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCC
Confidence                22222   33            344578899999999999999999876        3444567899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH-----
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-----  231 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----  231 (394)
                      ++++|+..++++++....       .   ..++..+|.++...|++++|+..+++++..     .++++.....+     
T Consensus       192 ~~~~A~~~~~~~~~~~~~-------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          192 EPRKAISDLKAASKLKND-------N---TEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             CGGGGHHHHHHHHHHHCS-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-------C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHH
Confidence            999999999999987432       2   356688999999999999999999999865     12222222222     


Q ss_pred             ----HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          232 ----LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       232 ----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                          ..+|.++...|++++|+.+|++++.+.     +.++. ....+..+|.++...|++++|+..+++++.+.      
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------  325 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------  325 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence                334999999999999999999998842     22222 24578899999999999999999999998753      


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 016124          307 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  364 (394)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  364 (394)
                        |....++..+|.++...|+++ +|+..+++++++     .+++   ..++..++.+
T Consensus       326 --p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~p~~---~~~~~~l~~~  372 (450)
T 2y4t_A          326 --PDNVNALKDRAEAYLIEEMYD-EAIQDYETAQEH-----NEND---QQIREGLEKA  372 (450)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----SSSC---HHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHh-----Ccch---HHHHHHHHHH
Confidence              444568999999999999999 999999999874     2334   4455566633

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.96  E-value=1.4e-26  Score=197.38  Aligned_cols=270  Identities=13%  Similarity=0.065  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ...++..|..+...|++++|+.++++++.+.....  +.+..+.++..+|.+|...|++++|+.++++++++.+... ..
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~  177 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LY  177 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cc
Confidence            34677889999999999999999999998876542  4567888999999999999999999999999999987642 12


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      .+..+.++.++|.+|...|++++|+.++++++++.++.    ++++....++.++|.+|...|++++|+.++++++.+.+
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999998764    45667788899999999999999999999999999887


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                      ...   +|....++.++|.++...|++++|..++++++.+....   .++.....+..++.++...|+.    ..+.+++
T Consensus       254 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~----~~~~~al  323 (378)
T 3q15_A          254 EKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE----RKIHDLL  323 (378)
T ss_dssp             HHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH----HHHHHHH
T ss_pred             hhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHHH
Confidence            653   45668899999999999999999999999999986554   2344455667888888888883    3344444


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Q 016124          298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  347 (394)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~  347 (394)
                      ...++.  ...+.....+..+|.++...|+++ +|..+|++++++.+++.
T Consensus       324 ~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~~~  370 (378)
T 3q15_A          324 SYFEKK--NLHAYIEACARSAAAVFESSCHFE-QAAAFYRKVLKAQEDIL  370 (378)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC--CChhHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHh
Confidence            444332  455677788889999999999999 99999999999877653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=2.7e-27  Score=200.59  Aligned_cols=297  Identities=13%  Similarity=0.094  Sum_probs=235.8

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      .|....++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++..    
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  100 (359)
T 3ieg_A           33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----  100 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            44556788999999999999999999999999862        333467899999999999999999999999875    


Q ss_pred             cCCCCc---chHhhhHhH------------HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124           92 RGTESA---DLVLPLFSL------------GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus        92 ~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  156 (394)
                          .|   ....++..+            |.++...|++++|+..+++++..        .|....++..+|.++...|
T Consensus       101 ----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A          101 ----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEG  168 (359)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             ----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCC
Confidence                33   444444444            79999999999999999999986        2334567899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH------
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH------  230 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------  230 (394)
                      ++++|+..+++++...       |+.   ..++..+|.++...|++++|+..+++++...     ++++.....      
T Consensus       169 ~~~~A~~~~~~~~~~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~  233 (359)
T 3ieg_A          169 EPRKAISDLKAASKLK-------SDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKK  233 (359)
T ss_dssp             CHHHHHHHHHHHHTTC-------SCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHH
Confidence            9999999999998742       333   2456899999999999999999999998752     233322221      


Q ss_pred             ---HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124          231 ---LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  306 (394)
Q Consensus       231 ---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  306 (394)
                         ...+|.++...|++++|+..+++++...     ++++ .....+..+|.++...|++++|+..++++++..      
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------  302 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME------  302 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Confidence               2355889999999999999999998852     2222 223457789999999999999999999998852      


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 016124          307 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG  369 (394)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  369 (394)
                        |....++..+|.++...|+++ +|+..|++++++     .+++   ..+...++.+....+
T Consensus       303 --~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          303 --PDNVNALKDRAEAYLIEEMYD-EAIQDYEAAQEH-----NEND---QQIREGLEKAQRLLK  354 (359)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHHH
Confidence              444568999999999999999 999999999974     2333   445566666655544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=202.88  Aligned_cols=278  Identities=14%  Similarity=0.066  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..+..+|..+...|++++|+..+++++..        .|....++..++.++...|++++|+..+++++..        .
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~   86 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y   86 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence            45678899999999999999999999876        4455667788899999999999999999999986        3


Q ss_pred             hHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      |....++..+|.++...| ++++|+.++++++...       +..   ..++..+|.++...|++++|+..+++++... 
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  155 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-------KTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-  155 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-------TTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------Ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence            344567889999999999 9999999999998753       222   2356889999999999999999999998862 


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                             |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++
T Consensus       156 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          156 -------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             -------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                   333456778999999999999999999999873        45667889999999999999999999999999


Q ss_pred             HHHHHHcCCCC-hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhh
Q 016124          298 YIREIAFGKDS-LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  376 (394)
Q Consensus       298 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  376 (394)
                      .......++.. +....++..+|.++...|+++ +|+.++++++++.        |....++..+|.++...|++++|..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~  291 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA-EALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVD  291 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHH
Confidence            98755432222 444568899999999999999 9999999999862        3345678999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 016124          377 LKKRLSNLRMK  387 (394)
Q Consensus       377 ~~~~a~~~~~~  387 (394)
                      +|++++++.+.
T Consensus       292 ~~~~al~~~p~  302 (330)
T 3hym_B          292 YFHTALGLRRD  302 (330)
T ss_dssp             HHHTTTTTCSC
T ss_pred             HHHHHHccCCC
Confidence            99999877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.8e-27  Score=214.31  Aligned_cols=293  Identities=14%  Similarity=0.129  Sum_probs=243.9

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |....++..+|..+...|++++|+..|++++...        |....++..++.++...|++++|...+++++..     
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  368 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----  368 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Confidence            3456778899999999999999999999998752        223456778899999999999999999998864     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         .|....++..+|.+|...|++++|..+|++++++        .|....++..++.+|...|++++|+..|+++++..
T Consensus       369 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          369 ---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             ---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               4556778899999999999999999999999876        34445678899999999999999999999998753


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                             ++.   ..++..++.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|+
T Consensus       438 -------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          438 -------QGT---HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             -------TTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------ccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                   222   245678999999999999999999999875        34455778999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          253 ICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      ++++.....  +..|.. ..++..+|.++...|++++|+..++++++..        |....++..++.++...|+++ +
T Consensus       500 ~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~-~  568 (597)
T 2xpi_A          500 NALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPG-L  568 (597)
T ss_dssp             HHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHH-H
T ss_pred             HHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHH-H
Confidence            999876543  234543 7889999999999999999999999998753        334567999999999999999 9


Q ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 016124          332 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  366 (394)
Q Consensus       332 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  366 (394)
                      |..+|++++++        .|+...++..++.+|.
T Consensus       569 A~~~~~~~l~~--------~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          569 AITHLHESLAI--------SPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence            99999999986        2333556777777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.96  E-value=2.4e-27  Score=193.95  Aligned_cols=270  Identities=21%  Similarity=0.175  Sum_probs=227.2

Q ss_pred             HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHH
Q 016124          111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  190 (394)
Q Consensus       111 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  190 (394)
                      ...|++++|+.++++++++..+..+.++|....++..+|.++...|++++|+.++++++++..+.  .+++++....++.
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~   89 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--LGKDHPAVAATLN   89 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence            45789999999999999999999888889999999999999999999999999999999998764  4456677788999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124          191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  270 (394)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  270 (394)
                      ++|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.++++++.+.....++++|...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999999999998888889999999999999999999999999999999998888888888899


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH-cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCC
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  349 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~  349 (394)
                      .++..+|.++...|++++|+.++++++.+.... .+..++.....+..++..+...+... .+. .+..+...... .+.
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~  246 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSA-PYGEYGSWYKA-CKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC-C-------------C-CCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh-HHH-HHHHHHHHHHh-cCC
Confidence            999999999999999999999999999986543 23334444556667777777666554 443 45555555444 456


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          350 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       350 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      .+|....++..+|.+|...|++++|..+|++++++.
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            779999999999999999999999999999998753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.96  E-value=6.5e-27  Score=191.40  Aligned_cols=271  Identities=20%  Similarity=0.188  Sum_probs=226.0

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhH
Q 016124           25 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  104 (394)
Q Consensus        25 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  104 (394)
                      .....|++++|+.+|++++++..+..+.++|..+.++..+|.++...|++++|+.++++++.+.+...+++++....++.
T Consensus        10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   89 (283)
T 3edt_B           10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN   89 (283)
T ss_dssp             ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            34568999999999999999999988888899999999999999999999999999999999998887778889999999


Q ss_pred             hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       105 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      .+|.++...|++++|+.++++++.+.+...++++|....++.++|.++...|++++|+.++++++++.+..  .+++++.
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  167 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPN  167 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHH
Confidence            99999999999999999999999999998888889999999999999999999999999999999997765  4556677


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  263 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  263 (394)
                      ...++.++|.++...|++++|+.++++++.+..... +..++.....+..++..+...+....+.. +..+..... ..+
T Consensus       168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~  245 (283)
T 3edt_B          168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK-ACK  245 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH-hcC
Confidence            788899999999999999999999999999866543 23345555566677777766665554443 334433332 334


Q ss_pred             CCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          264 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      ..++....++..+|.++...|++++|..++++++++
T Consensus       246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566788889999999999999999999999999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=209.89  Aligned_cols=316  Identities=11%  Similarity=0.019  Sum_probs=235.1

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC-CCCcchHhhhHhH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSL  106 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l  106 (394)
                      ..++.+.++..+++.+.....  ..+++..+..++.+|.++...|++++|+++|++|+++.+...+ ..++....++.++
T Consensus        23 ~l~~~~~~l~~~e~~~~~~~~--~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl  100 (472)
T 4g1t_A           23 NLMEGENSLDDFEDKVFYRTE--FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY  100 (472)
T ss_dssp             CTTTTCCCHHHHHHHHHHHTT--SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            456677777777776654332  2334456778999999999999999999999999999877643 2356778889999


Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      |.+|..+|++++|+.++++++.+.+...++.++..+.++.++|.++..  .+++++|+.+|++++++.       |+.+.
T Consensus       101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~  173 (472)
T 4g1t_A          101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPE  173 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHH
Confidence            999999999999999999999999887666666667778888877665  457999999999999863       44444


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHHh
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS----RSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      ....+......+...++.++|++.+++++++        +|....++..+|..+.    ..|++++|..++++++.+   
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---  242 (472)
T 4g1t_A          174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---  242 (472)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---
Confidence            3322223333355678889999999999986        3445556666766554    456788999999999874   


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC-------------
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE-------------  327 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------  327 (394)
                           +|....++.++|.+|...|++++|+..++++++..        |....++..+|.+|...+.             
T Consensus       243 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~  309 (472)
T 4g1t_A          243 -----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK  309 (472)
T ss_dssp             -----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_pred             -----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                 56777889999999999999999999999998854        5556678888888765321             


Q ss_pred             ------CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          328 ------DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       328 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                            ++ +|+..+++++++        +|....++..+|.++...|++++|+.+|++++.+.
T Consensus       310 ~~~~~~~~-~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          310 RKLLELIG-HAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhhHH-HHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence                  22 455555555443        23445667888999999999999999999988653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=3.4e-27  Score=197.30  Aligned_cols=291  Identities=14%  Similarity=0.124  Sum_probs=232.3

Q ss_pred             CCch-HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124           10 DDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus        10 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      +++| .....++.+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.. 
T Consensus        14 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-   84 (327)
T 3cv0_A           14 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARML-   84 (327)
T ss_dssp             SSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence            3444 455668899999999999999999999998852        334567888999999999999999999999987 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH----------HHHH-HH-HHHHCC
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA----------MCSL-AH-AKCANG  156 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----------~~~l-a~-~~~~~g  156 (394)
                             .|....++..+|.++...|++++|+..+++++....     ..+.....          ...+ +. ++...|
T Consensus        85 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (327)
T 3cv0_A           85 -------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-----QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN  152 (327)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTTTC--------------------CCTTSHH
T ss_pred             -------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence                   355577899999999999999999999999987632     12111100          1122 44 578889


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      ++++|+.+++++++...       +.   ..++..+|.++...|++++|+.++++++..        .|....++..+|.
T Consensus       153 ~~~~A~~~~~~~~~~~~-------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~  214 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNP-------ND---AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGA  214 (327)
T ss_dssp             HHHHHHHHHHHHHHHST-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCC-------CC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHH
Confidence            99999999999998642       22   356688999999999999999999999875        3455678899999


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC----ChhHH
Q 016124          237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD----SLPVG  312 (394)
Q Consensus       237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~~  312 (394)
                      ++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.......++.    .....
T Consensus       215 ~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  286 (327)
T 3cv0_A          215 TLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR  286 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence            999999999999999999884        355677889999999999999999999999998762211111    11156


Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124          313 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  348 (394)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~  348 (394)
                      .++..++.++...|+++ +|...++++++.....++
T Consensus       287 ~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          287 SMWDFFRMLLNVMNRPD-LVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHHHHHHHTTCHH-HHHHHTTCCSHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcchhhh
Confidence            78899999999999999 999999999988776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=9.7e-27  Score=194.57  Aligned_cols=288  Identities=16%  Similarity=0.053  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      ....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..       
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4456788999999999999999999999886        4556788899999999999999999999999986       


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHH------HHHHHHH-HH-HHHHcCChHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM------ENMRIDL-AE-LLHIVGRGQEGREL  208 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l-a~-~~~~~g~~~~A~~~  208 (394)
                       .|....++..+|.++...|++++|+..+++++......   .......      ......+ +. ++...|++++|+.+
T Consensus        85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  160 (327)
T 3cv0_A           85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL  160 (327)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---TTC--------------------CCTTSHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence             23445678899999999999999999999999864321   0000000      0000122 44 58888999999999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHH
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  288 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  288 (394)
                      +++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++
T Consensus       161 ~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          161 LHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHH
Confidence            9999875        3445678899999999999999999999999884        35567788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHH
Q 016124          289 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKKVVSY  364 (394)
Q Consensus       289 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~  364 (394)
                      |+..+++++...        |....++..+|.++...|+++ +|+..+++++.+.....+....    ....++..++.+
T Consensus       225 A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          225 ALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYD-LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             HHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            999999998753        334557889999999999999 9999999999876442221111    167889999999


Q ss_pred             HHHhcCchhhhhhHHHHHHHHHHH
Q 016124          365 LDKLGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       365 ~~~~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      +...|++++|...+++++...++.
T Consensus       296 ~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          296 LNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhcchh
Confidence            999999999999999999887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.96  E-value=6.7e-25  Score=186.84  Aligned_cols=312  Identities=10%  Similarity=-0.019  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   93 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   93 (394)
                      ..+.++..+|.++...|++++|+.++++++...+   ..+......++..+|.++...|++++|...+++++.+..... 
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-   87 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-   87 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence            3467778899999999999999999999988642   122234566888999999999999999999999999887642 


Q ss_pred             CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           94 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                       +......++..+|.++...|++++|+.++++++.+.+...++.++....++.++|.++...|++++|..++++++.+..
T Consensus        88 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           88 -VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             -cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence             2334466788999999999999999999999999988765444577788899999999999999999999999999876


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH--HHHHHHHHHcccHHHHHHHH
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL--LNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~  251 (394)
                      ..   ++  +....++.++|.++...|++++|..++++++.+....   ..+......  ..++.++...|++++|..++
T Consensus       167 ~~---~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          167 SY---QP--QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             TS---CG--GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cc---Cc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            53   12  1234677899999999999999999999998875332   122111222  24556688999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  331 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  331 (394)
                      ++++...    ..........+..++.++...|++++|...+++++......  +..+....++..++.++...|+++ +
T Consensus       239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~  311 (373)
T 1hz4_A          239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-D  311 (373)
T ss_dssp             HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-H
T ss_pred             HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHH-H
Confidence            8876521    11111223356789999999999999999999999987663  223445568889999999999999 9


Q ss_pred             HHHHHHHHHHHHHh
Q 016124          332 LLELLKRVLRIQER  345 (394)
Q Consensus       332 A~~~~~~al~~~~~  345 (394)
                      |...+++++.+...
T Consensus       312 A~~~l~~al~~~~~  325 (373)
T 1hz4_A          312 AQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.95  E-value=2.7e-24  Score=183.11  Aligned_cols=313  Identities=12%  Similarity=0.005  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ....+...+|.++...|++++|+..+++++....   ..+......++..+|.++...|++++|...+++++.+.+..  
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            3456777889999999999999999999988631   11112345578899999999999999999999999988764  


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .+......++.++|.++...|++++|+.++++++.+.+..  ..+.++....++.++|.++...|++++|..++++++.+
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2334556778999999999999999999999999998764  22223555677789999999999999999999999987


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHhhcChHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--LHLGITLYHLNRDKEAEKLV  293 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~  293 (394)
                      .....   ++....++..+|.++...|++++|..++++++.+....   ..+......  ...+.++...|++++|..++
T Consensus       165 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          165 LSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             TTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            64321   23356788899999999999999999999999875432   112111111  24556688999999999999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124          294 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  373 (394)
Q Consensus       294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  373 (394)
                      ++++...    ....+.....+..++.++...|+++ +|...+++++......  ...+....++..+|.++...|++++
T Consensus       239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~  311 (373)
T 1hz4_A          239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFE-PAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSD  311 (373)
T ss_dssp             HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHH
Confidence            9887522    1111222345678999999999999 9999999999987763  2234555688899999999999999


Q ss_pred             hhhhHHHHHHHHHHH
Q 016124          374 KFPLKKRLSNLRMKY  388 (394)
Q Consensus       374 A~~~~~~a~~~~~~~  388 (394)
                      |...+++++.+.+..
T Consensus       312 A~~~l~~al~~~~~~  326 (373)
T 1hz4_A          312 AQRVLLDALKLANRT  326 (373)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999987754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.9e-24  Score=173.14  Aligned_cols=254  Identities=12%  Similarity=0.024  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+..+..+|.++...|++++|+.++++++...         ....++..+|.++...|++++|+.++++++.+.+.. .
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~   72 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence            456788999999999999999999999999872         345788999999999999999999999999987653 2


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ++.+....++..+|.++...|++++|+.++++++.+.       +.           +.++...|++++|+..+++++. 
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----------~~~~~~~~~~~~a~~~~~~~~~-  133 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----------ADILTKLRNAEKELKKAEAEAY-  133 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----------hHHHHHHhHHHHHHHHHHHHHH-
Confidence            3444557899999999999999999999999999863       22           3457778889999999999877 


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                             ..|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++
T Consensus       134 -------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          134 -------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                   35777889999999999999999999999999984        345668899999999999999999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 016124          296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  364 (394)
Q Consensus       296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  364 (394)
                      +++..        |....++..+|.++...|+++ +|+.++++++++..+..  ..|....++..++.+
T Consensus       199 al~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          199 AIEKD--------PNFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             HHHhC--------HHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence            98853        344567899999999999999 99999999999876542  234445555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.6e-24  Score=172.65  Aligned_cols=254  Identities=11%  Similarity=0.029  Sum_probs=210.3

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+..+..+|.++...|++++|+.+|+++++..      +   ...++..+|.++...|++++|+..+++++.+.....
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH------K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            4567889999999999999999999999999873      1   245788999999999999999999999999865531


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                       ++.+....++..+|.++...|++++|+.++++++.+.     +.           +.++...|++++|+..+++++.. 
T Consensus        73 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~-  134 (258)
T 3uq3_A           73 -ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV-  134 (258)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc-
Confidence             2233347899999999999999999999999999862     11           35677788899999999998873 


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                               .+....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..++
T Consensus       135 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          135 ---------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                     2334567789999999999999999999999885        34456789999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  320 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  320 (394)
                      +++..        .|....++..+|.++...|++++|...+++++++..+..  ..|....++..++.
T Consensus       198 ~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          198 KAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            99884        355678899999999999999999999999999876542  33444445555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=4.4e-25  Score=185.70  Aligned_cols=256  Identities=9%  Similarity=-0.046  Sum_probs=214.7

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE   89 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~   89 (394)
                      .+|....++..+|.++...|++++|+..|++++.+        .|....+++.+|.++...|+ +++|+..|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            46888999999999999999999999999999987        35567789999999999997 99999999999997  


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                            +|....+++++|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+.++++++
T Consensus       162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  5677889999999999999999999999999987        46666789999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc-
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-  242 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-  242 (394)
                      ++..       +.   ..++.++|.++.. .|..++|     +.++++++.+        .|....++.+++.++...| 
T Consensus       228 ~l~P-------~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          228 KEDV-------RN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HHCT-------TC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred             HhCC-------CC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence            9743       22   4567899999999 5665888     5889999885        4666789999999999988 


Q ss_pred             -cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc--------C-hHHHHHHHHHH-HHHHHHHcCCCChhH
Q 016124          243 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA-LYIREIAFGKDSLPV  311 (394)
Q Consensus       243 -~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~  311 (394)
                       ++++|++.++++ +        ..|....++..+|.+|...|        + +++|+.+|+++ ++        -.|..
T Consensus       290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r  352 (382)
T 2h6f_A          290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIR  352 (382)
T ss_dssp             GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGG
T ss_pred             cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchh
Confidence             689998877654 2        35677888999999999985        2 47788888776 44        33666


Q ss_pred             HHHHHHHHHHHHHh
Q 016124          312 GEALDCLVSIQTRL  325 (394)
Q Consensus       312 ~~~~~~l~~~~~~~  325 (394)
                      ...|..++..+...
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66777777766544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=1.7e-25  Score=181.91  Aligned_cols=250  Identities=9%  Similarity=0.004  Sum_probs=207.5

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      ..+...|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.       ++
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~   68 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-------VN   68 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-------SC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------cC
Confidence            46778999999999999999999999875        2333347889999999999999999999999872       12


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      ++.....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++.+   
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  137 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---  137 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence            33334566789999999999999999999999985        3445578999999999999999999999998763   


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---CchHHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLK  337 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~~A~~~~~  337 (394)
                           .|....++..+|......+++++|+..++++++..        |....++..+|.++...|+   ++ +|+..++
T Consensus       138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~  203 (272)
T 3u4t_A          138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--------PNIYIGYLWRARANAAQDPDTKQG-LAKPYYE  203 (272)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHSTTCSSC-TTHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCcchhhH-HHHHHHH
Confidence                 56778899999944455569999999999998864        3345678899999999998   88 8999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124          338 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  390 (394)
Q Consensus       338 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  390 (394)
                      +++++......+..+....++..+|.+|...|++++|..+|++++++.++...
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  256 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK  256 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence            99998765433223445688999999999999999999999999998876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=4.3e-25  Score=179.54  Aligned_cols=244  Identities=12%  Similarity=0.032  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..+...|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++..     +++.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~   70 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT   70 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence            35678899999999999999999999875        4455668999999999999999999999999873     2223


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      .....++..+|.++...|++++|+.+++++++....       .   ..++..+|.++...|++++|+.++++++..   
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-------~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-------R---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------C---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-------c---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence            334677899999999999999999999999996432       2   246689999999999999999999998864   


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC---hHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLE  295 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  295 (394)
                           .|....++.++|......+++++|+..+++++++        .|....++..+|.++...|+   +++|+..+++
T Consensus       138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                 5666788999994444556999999999999985        35557888999999999999   9999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                      ++++.....+++......++..+|.++...|+++ +|+.++++++++
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~  250 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV-KADAAWKNILAL  250 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc
Confidence            9998755422222335578899999999999999 999999999986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=1.2e-24  Score=183.06  Aligned_cols=255  Identities=11%  Similarity=-0.061  Sum_probs=212.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCc-HHHHHHHHHHHHHHHHH
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  132 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~  132 (394)
                      .|....++..+|.++...|++++|+..+++++.+        +|....+++.+|.++...|+ +++|+..|++++.+   
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence            4678889999999999999999999999999987        67778899999999999997 99999999999987   


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                           +|....++.++|.++...|++++|+..|++++++..+       .   ..++.++|.++...|++++|+.+++++
T Consensus       162 -----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-------~---~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          162 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------N---YHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------C---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                 4566778999999999999999999999999997432       2   456799999999999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHH-cccHHHH-----HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc--
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEA-----ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--  284 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--  284 (394)
                      +.+        +|....+++++|.++.. .|.+++|     +.++++++.+        .|....++.+++.++...|  
T Consensus       227 l~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~  290 (382)
T 2h6f_A          227 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLS  290 (382)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGG
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCcc
Confidence            986        56778899999999999 5665788     5889999884        4677789999999999988  


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---------CchHHHHHHHHH-HHHHHhhcCCCCHHH
Q 016124          285 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------DDTKLLELLKRV-LRIQEREFGSESEEV  354 (394)
Q Consensus       285 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~~A~~~~~~a-l~~~~~~~~~~~~~~  354 (394)
                      ++++|++.++++ +        ..|....++..+|.++...|+         .+ +|+.+|+++ ++        .+|..
T Consensus       291 ~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~-~A~~~~~~l~~~--------~DP~r  352 (382)
T 2h6f_A          291 KYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN-KALELCEILAKE--------KDTIR  352 (382)
T ss_dssp             GCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHHHHHT--------TCGGG
T ss_pred             chHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHH--------hCchh
Confidence            688998877664 2        234455678899999998862         24 666666665 43        35666


Q ss_pred             HHHHHHHHHHHHHh
Q 016124          355 MLTLKKVVSYLDKL  368 (394)
Q Consensus       355 ~~~~~~la~~~~~~  368 (394)
                      ...|..++..+..+
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=6e-25  Score=171.68  Aligned_cols=200  Identities=18%  Similarity=0.174  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |..+.++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++++     
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----   68 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            344567889999999999999999999999875        3455678999999999999999999999999987     


Q ss_pred             CCCCcchHhhhHhHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKE-----------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  161 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  161 (394)
                         .|....++..+|.++...           |++++|+..+++++++        .|....++.++|.++...|++++|
T Consensus        69 ---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           69 ---TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence               566778999999999999           9999999999999987        455567889999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc
Q 016124          162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  241 (394)
Q Consensus       162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  241 (394)
                      +..|++++++. .       .   ..++.++|.++...|++++|+..|++++..        +|....++.++|.++...
T Consensus       138 ~~~~~~al~~~-~-------~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          138 EASLKQALALE-D-------T---PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHHHC-C-------C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhcc-c-------c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHc
Confidence            99999999974 2       1   345689999999999999999999999986        466678899999999999


Q ss_pred             ccHHHHHHHHHHHH
Q 016124          242 KNFVEAERLLRICL  255 (394)
Q Consensus       242 g~~~~A~~~~~~a~  255 (394)
                      |++++|+..++++-
T Consensus       199 g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          199 GKAEEAARAAALEH  212 (217)
T ss_dssp             --------------
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=1.1e-22  Score=179.33  Aligned_cols=296  Identities=11%  Similarity=0.050  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH----hhchhHHHHHHHHHHHH
Q 016124           16 DAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITI   87 (394)
Q Consensus        16 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~   87 (394)
                      +.+++.+|.+|..    .+++++|+.+|+++.+.       .   ...++..+|.+|..    .+++++|+.+|+++.+.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            4567778888887    78888888888887652       1   23456667777777    67777777777776543


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAE  159 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  159 (394)
                                ....++..+|.+|..    .+++++|+.+|+++.+.       ++   ..++..+|.+|..    .++++
T Consensus       145 ----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          145 ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence                      124456666666666    56666666666666542       11   2344555555555    55555


Q ss_pred             HHHHHHHHHHHHHHhc------------ccCC---------------CchHHHHHHHHHHHHHHHH----cCChHHHHHH
Q 016124          160 EAVELYKKALRVIKDS------------NYMS---------------LDDSIMENMRIDLAELLHI----VGRGQEGREL  208 (394)
Q Consensus       160 ~A~~~~~~a~~~~~~~------------~~~~---------------~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  208 (394)
                      +|+.+|+++.+.-...            ....               ..+   ..++.++|.+|..    .+++++|+.+
T Consensus       205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~  281 (490)
T 2xm6_A          205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEW  281 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence            5555555554310000            0000               000   1233556666665    5666666666


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  283 (394)
                      |+++.+.          ....++..+|.+|...     +++++|+.+|+++.+.          ....++.++|.+|...
T Consensus       282 ~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~~  341 (490)
T 2xm6_A          282 YRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------GDATAQANLGAIYFRL  341 (490)
T ss_dssp             HHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHS
T ss_pred             HHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Confidence            6665431          1234566777777776     7777777777777661          1235677888888775


Q ss_pred             c---ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 016124          284 N---RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVML  356 (394)
Q Consensus       284 g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  356 (394)
                      |   ++++|+.+|+++++.       ++   ..++..||.++..    .++++ +|+.+|+++.+.       .+   ..
T Consensus       342 g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~A~~~-------~~---~~  400 (490)
T 2xm6_A          342 GSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQ-QAAIWMRKAAEQ-------GL---SA  400 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT-------TC---HH
T ss_pred             CCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHhC-------CC---HH
Confidence            5   778888888887752       22   4578899999998    78888 999999998862       22   46


Q ss_pred             HHHHHHHHHHH----hcCchhhhhhHHHHHHHH
Q 016124          357 TLKKVVSYLDK----LGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       357 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  385 (394)
                      ++.+||.+|..    .+++++|..+|+++++..
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            78899999998    899999999999999987

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=2.4e-24  Score=168.22  Aligned_cols=197  Identities=18%  Similarity=0.119  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..++..+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999875        6777889999999999999999999999999987        


Q ss_pred             chHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHH
Q 016124          138 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  206 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  206 (394)
                      .|....++.++|.++...           |++++|+..+++++++.       |+.   ..++.++|.++...|++++|+
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRY---APLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------ccc---HHHHHHHHHHHHHcCChHHHH
Confidence            455567889999999999           99999999999999963       232   345689999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcCh
Q 016124          207 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  286 (394)
Q Consensus       207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  286 (394)
                      ..|++++++       +  ....++.++|.++...|++++|+..|++++++        .|....++..+|.++...|++
T Consensus       139 ~~~~~al~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          139 ASLKQALAL-------E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHH-------C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhc-------c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            999999987       2  34668899999999999999999999999984        466778899999999999999


Q ss_pred             HHHHHHHHHHH
Q 016124          287 KEAEKLVLEAL  297 (394)
Q Consensus       287 ~~A~~~~~~a~  297 (394)
                      ++|+..++++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=1.7e-22  Score=178.11  Aligned_cols=294  Identities=14%  Similarity=0.064  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH----hhchhHHHHHHHHHHH
Q 016124           15 LDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVIT   86 (394)
Q Consensus        15 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~   86 (394)
                      .+.+++.+|..|..    .+++++|+.+|+++.+.       +   ...+++.+|.+|..    .+++++|+.+|+++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            46778999999999    99999999999999863       1   24578899999999    9999999999999976


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNA  158 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  158 (394)
                      .          ....++..+|.+|..    .+++++|+.+|+++.+.       ++   ..++..+|.+|..    .+++
T Consensus       108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A          108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCH
Confidence            3          235678899999999    89999999999999763       22   4578899999998    8999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 016124          159 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  234 (394)
Q Consensus       159 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (394)
                      ++|+.+|+++.+.       + +    ..++..+|.+|..    .+++++|+.+|+++.+.       .   ...++..+
T Consensus       168 ~~A~~~~~~a~~~-------~-~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~l  225 (490)
T 2xm6_A          168 VMAREWYSKAAEQ-------G-N----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------G---DELGQLHL  225 (490)
T ss_dssp             HHHHHHHHHHHHT-------T-C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHH
T ss_pred             HHHHHHHHHHHHC-------C-C----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHH
Confidence            9999999999873       1 1    2455778888887    78888888888877642       1   12334444


Q ss_pred             HHHHHH----cccHHHHHHHHHHHHHHHH-----------------------------hhcCCCCCcchHHHHHHHHHHH
Q 016124          235 AASYSR----SKNFVEAERLLRICLDIMT-----------------------------KTVGPDDQSISFPMLHLGITLY  281 (394)
Q Consensus       235 a~~~~~----~g~~~~A~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~la~~~~  281 (394)
                      |.+|..    .+++++|+.+|+++.+.-.                             +..   ......++..+|.+|.
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~---~~~~~~a~~~Lg~~y~  302 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA---EQGNSDGQYYLAHLYD  302 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH---TTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHH
Confidence            444443    4444455444444432100                             000   0012334555666665


Q ss_pred             hh-----cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHHHhhcCCCCHH
Q 016124          282 HL-----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG---EDDTKLLELLKRVLRIQEREFGSESEE  353 (394)
Q Consensus       282 ~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~A~~~~~~al~~~~~~~~~~~~~  353 (394)
                      ..     +++++|+.+|+++.+.       ++   ..++..+|.++...|   +++ +|+.+|+++.+.       .+  
T Consensus       303 ~~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~~g~~~~~~-~A~~~~~~a~~~-------~~--  362 (490)
T 2xm6_A          303 KGAEGVAKNREQAISWYTKSAEQ-------GD---ATAQANLGAIYFRLGSEEEHK-KAVEWFRKAAAK-------GE--  362 (490)
T ss_dssp             HCBTTBCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHSCCHHHHH-HHHHHHHHHHHT-------TC--
T ss_pred             cCCCCCcCCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHhCCCcccHH-HHHHHHHHHHHC-------CC--
Confidence            55     5666666666665541       12   235666777776654   455 677777776652       22  


Q ss_pred             HHHHHHHHHHHHHH----hcCchhhhhhHHHHHHH
Q 016124          354 VMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       354 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  384 (394)
                       ..++..||.+|..    .+++++|+.+|+++.+.
T Consensus       363 -~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          363 -KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence             4567788888888    78888888888888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.92  E-value=4.3e-22  Score=162.33  Aligned_cols=279  Identities=13%  Similarity=0.006  Sum_probs=211.9

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      .-.+..|+|.+|+..+++...        .+|. .......++.+|...|++++|+..++.           ..+....+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a   67 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQA   67 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHH
Confidence            345678999999998876533        2233 345667789999999999999976543           13446678


Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      +..++..+...|++++|+..+++.+..      ..+|....++..+|.++...|++++|+..+++            ++.
T Consensus        68 ~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~  129 (291)
T 3mkr_A           68 VRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDS  129 (291)
T ss_dssp             HHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCC
Confidence            888999999999999999999988753      11355556789999999999999999999887            122


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH--HHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL--NLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                         ..++..+|.++..+|++++|+..+++++...        |.......  .+..++...|++++|+..|+++++.   
T Consensus       130 ---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---  195 (291)
T 3mkr_A          130 ---LECMAMTVQILLKLDRLDLARKELKKMQDQD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---  195 (291)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---
Confidence               2356789999999999999999999998761        22221111  1223444569999999999999984   


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                           .|....++.++|.++...|++++|+..+++++...        |....++.++|.++...|+..+.+..++++++
T Consensus       196 -----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          196 -----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 45677899999999999999999999999999854        44455799999999999999734678999998


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhH
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  378 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  378 (394)
                      ++     .|++|...+       +..+.+.++++..-|
T Consensus       263 ~~-----~P~~~~~~d-------~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          263 DA-----HRSHPFIKE-------YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HH-----CTTCHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             Hh-----CCCChHHHH-------HHHHHHHHHHHHHHc
Confidence            75     466776544       345555666655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.6e-21  Score=158.38  Aligned_cols=225  Identities=15%  Similarity=0.170  Sum_probs=192.8

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH----hhchhHHHHHHHHHHHHH
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITIL   88 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~   88 (394)
                      |..+.+++.+|..+...|++++|+.+|+++++.       ++   ..++..+|.++..    .|++++|+.+|+++++. 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence            455678899999999999999999999999871       22   3578899999999    99999999999999875 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCHHH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEE  160 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  160 (394)
                            +   ...++..+|.++..    .+++++|+.+|+++++.       +   ...++.++|.+|..    .+++++
T Consensus        72 ------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           72 ------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             ------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHH
Confidence                  1   46788999999999    99999999999999874       2   24578999999999    999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          161 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       161 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      |+.+++++++.       +  +   ..++.++|.++..    .+++++|+.+++++++.       .   ...++.++|.
T Consensus       133 A~~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~  190 (273)
T 1ouv_A          133 AVEYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred             HHHHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHH
Confidence            99999999873       1  1   3456889999999    99999999999999864       1   2467889999


Q ss_pred             HHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHH
Q 016124          237 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  299 (394)
Q Consensus       237 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  299 (394)
                      +|..    .+++++|+.+++++++.       . +  ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999873       1 2  5688999999999    99999999999999885

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=4.7e-21  Score=155.68  Aligned_cols=229  Identities=14%  Similarity=0.048  Sum_probs=195.2

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  172 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  172 (394)
                      |..+.++..+|.++...|++++|+.+|+++++.       +++   .++..+|.++..    .+++++|+.+|+++++..
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KEN---SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence            345678899999999999999999999999871       232   578899999999    999999999999998741


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH----cccH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNF  244 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  244 (394)
                              +    ..++.++|.++..    .+++++|+.+++++++.          ....++.++|.+|..    .+++
T Consensus        73 --------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           73 --------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             --------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred             --------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCcccCH
Confidence                    1    3466889999999    99999999999999864          135678999999999    9999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124          245 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  320 (394)
Q Consensus       245 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  320 (394)
                      ++|+.+|+++++.       .   ...++..+|.++..    .+++++|+.+++++++.       ++   ..++..+|.
T Consensus       131 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~  190 (273)
T 1ouv_A          131 KKAVEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence            9999999999882       1   35678899999998    99999999999999863       22   357889999


Q ss_pred             HHHH----hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----hcCchhhhhhHHHHHHHHHHH
Q 016124          321 IQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKY  388 (394)
Q Consensus       321 ~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~  388 (394)
                      ++..    .++++ +|+.+|+++++.       .+   ..++..+|.+|..    .+++++|+.+|++++++.+..
T Consensus       191 ~~~~g~~~~~~~~-~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          191 MYHHGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHcCCCCCccHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            9999    99999 999999999874       22   5678899999999    999999999999999987654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.90  E-value=2.8e-21  Score=159.34  Aligned_cols=248  Identities=10%  Similarity=0.058  Sum_probs=196.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHH-Hh--CCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhH
Q 016124           28 TLENYEKSMLVYQRVINVLES-RY--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  104 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  104 (394)
                      ..|++++|..+++++.+..+. .+  +++.......+...|.+|...|++++|+..|.+++.+.....  +....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence            578999999999999887653 12  345556677788889999999999999999999999987753  4456678999


Q ss_pred             hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       105 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      ++|.+|...|++++|+.+|++++.+....  .+....+.++.++|.+|.. |++++|+.+|++++++.+..    .+...
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~  153 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ  153 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence            99999999999999999999999998764  2334567889999999999 99999999999999998763    34556


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                      ...++.++|.++..+|++++|+.+|++++.+.....  ..+....++..+|.++...|++++|+.+|++++ +....   
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            678889999999999999999999999999877643  233455678899999999999999999999998 43211   


Q ss_pred             CCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1122233455566655 4666554444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=3.4e-22  Score=162.94  Aligned_cols=260  Identities=12%  Similarity=0.023  Sum_probs=201.5

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch-HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      ...+..|+|.+|+..+++...        .+|.. ......++.+|...|++++|+..++.           ..+....+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a   67 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQA   67 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHH
Confidence            445678999999988876432        23333 45667789999999999999976643           13345678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      +..++..+...|++++|+..+++++...     ..|+.+   .++..+|.++...|++++|+..+++             
T Consensus        68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~-----~~P~~~---~~~~~la~~~~~~g~~~~Al~~l~~-------------  126 (291)
T 3mkr_A           68 VRMFAEYLASHSRRDAIVAELDREMSRS-----VDVTNT---TFLLMAASIYFYDQNPDAALRTLHQ-------------  126 (291)
T ss_dssp             HHHHHHHHHCSTTHHHHHHHHHHHHHSC-----CCCSCH---HHHHHHHHHHHHTTCHHHHHHHHTT-------------
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhcc-----cCCCCH---HHHHHHHHHHHHCCCHHHHHHHHhC-------------
Confidence            8899999999999999999999987621     123333   3468899999999999999999875             


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH--HHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                      |....++..+|.++..+|++++|+..+++++...        |........  +..++...|++++|+..|+++++..  
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--  196 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--  196 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--
Confidence            3445688899999999999999999999998841        222222111  2234445699999999999998753  


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh-hhhhHHHH
Q 016124          303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE-KFPLKKRL  381 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  381 (394)
                            |....++..+|.++...|+++ +|...++++++.        +|+...++.++|.++...|++.+ +..+++++
T Consensus       197 ------p~~~~~~~~la~~~~~~g~~~-eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          197 ------SPTLLLLNGQAACHMAQGRWE-AAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             ------CCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ------CCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                  344568999999999999999 999999999985        34456678999999999999976 57899999


Q ss_pred             HHHHHHHHH
Q 016124          382 SNLRMKYKQ  390 (394)
Q Consensus       382 ~~~~~~~~~  390 (394)
                      +++.++...
T Consensus       262 ~~~~P~~~~  270 (291)
T 3mkr_A          262 KDAHRSHPF  270 (291)
T ss_dssp             HHHCTTCHH
T ss_pred             HHhCCCChH
Confidence            988776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.90  E-value=2.2e-21  Score=158.81  Aligned_cols=223  Identities=13%  Similarity=0.035  Sum_probs=170.6

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      ..|.+|...|++++|+..|++++.+.....  +.+..+.++.++|.+|...|++++|+.+|++++.+....  .+....+
T Consensus        42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a  117 (292)
T 1qqe_A           42 QAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGA  117 (292)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHH
Confidence            336678889999999999999999987653  345567899999999999999999999999999998764  2344567


Q ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          143 MAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       143 ~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      .++.++|.+|... |++++|+.+|++++++.+..    .+......++.++|.++..+|++++|+.+|++++.+..... 
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-  192 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-  192 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-
Confidence            7899999999996 99999999999999998753    24445567789999999999999999999999998632110 


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH--hhcChHHHHHHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEAL  297 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~  297 (394)
                      ........++.++|.++...|++++|+..+++++.+.....   .......+..++..+.  ..+++++|+..|++++
T Consensus       193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            00013345788999999999999999999999987432221   1112334556666664  4566777777776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.89  E-value=3e-21  Score=159.20  Aligned_cols=248  Identities=9%  Similarity=-0.012  Sum_probs=192.8

Q ss_pred             HhCcHHHHHHHHHHHHHHHHH-hh--CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          112 KEGKAVDAESVFSRILKIYTK-VY--GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      ..|++++|..+++++...... .+  +++.......+...+.+|...|++++|+..|.+++++..+.    .+......+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~   78 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN----RSLFHAAKA   78 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CCHHHHHHH
Confidence            357788888888888776543 12  23334455567777889999999999999999999998764    356667888


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                      +.++|.+|..+|++++|+.+|++++.+.....  +....+.++.++|.+|.. |++++|+.+|++++.+....  .+...
T Consensus        79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~  153 (307)
T 2ifu_A           79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhH
Confidence            99999999999999999999999999876543  233457889999999999 99999999999999987653  22234


Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124          269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  348 (394)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~  348 (394)
                      ...++.++|.++...|++++|+.+|++++.+....  +..+.....+..++.++...|+++ +|+.+|++++ +.... .
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~-~A~~~~~~al-~~p~~-~  228 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYV-AAQKCVRESY-SIPGF-S  228 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHT-TSTTS-T
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHh-CCCCC-C
Confidence            56788999999999999999999999999988664  233455668889999999999999 9999999998 54321 1


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCchhhhh
Q 016124          349 SESEEVMLTLKKVVSYLDKLGRKEEKFP  376 (394)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~  376 (394)
                        .......+..++..+ ..|+.+.+..
T Consensus       229 --~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          229 --GSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             --TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             --CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence              123344566667666 4566554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.89  E-value=7.4e-21  Score=155.65  Aligned_cols=230  Identities=12%  Similarity=0.097  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      ....+...|.+|...|++++|+..|++++.+..+.  .+.+..+.++.++|.+|...|++++|+.+|++++.+.....  
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--  111 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--  111 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--
Confidence            45567888999999999999999999999998764  34456788999999999999999999999999999987643  


Q ss_pred             CCcchHhhhHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           95 ESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      +....+.++.++|.+|... |++++|+.+|++++++.+..  .+......++.++|.++..+|++++|+.+|++++++..
T Consensus       112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            3344577899999999996 99999999999999997653  12334467899999999999999999999999998753


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH--HcccHHHHHHHH
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLL  251 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~  251 (394)
                      ..   .........++.++|.++...|++++|+..+++++.+.....   .......+..++..+.  ..+++++|+..|
T Consensus       190 ~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~  263 (292)
T 1qqe_A          190 GN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (292)
T ss_dssp             SC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             cC---CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            32   111123345678999999999999999999999987643322   1112334555666664  456788887777


Q ss_pred             HHHHH
Q 016124          252 RICLD  256 (394)
Q Consensus       252 ~~a~~  256 (394)
                      ++++.
T Consensus       264 ~~~~~  268 (292)
T 1qqe_A          264 DNFMR  268 (292)
T ss_dssp             TTSSC
T ss_pred             ccCCc
Confidence            65543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=1e-21  Score=156.69  Aligned_cols=203  Identities=14%  Similarity=0.163  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+..+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            45677889999999999999999999999874        4556788999999999999999999999999986      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .|....++..+|.++...|++++|+.+++++++...       ..   ..++..+|.++...|++++|+.++++++..
T Consensus        87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-------EN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------CS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence              234456788999999999999999999999998642       22   235688999999999999999999999875


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                              .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++
T Consensus       155 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          155 --------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             --------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                    3445668899999999999999999999999884        345567889999999999999999999999


Q ss_pred             HHHHH
Q 016124          296 ALYIR  300 (394)
Q Consensus       296 a~~~~  300 (394)
                      ++++.
T Consensus       219 ~~~~~  223 (243)
T 2q7f_A          219 AIDIQ  223 (243)
T ss_dssp             HHHHC
T ss_pred             HHccC
Confidence            98854

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=1.1e-21  Score=156.63  Aligned_cols=219  Identities=15%  Similarity=0.202  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .+..+..+|..+...|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++..       
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-------   86 (243)
T ss_dssp             --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence            4667889999999999999999999999874        2334667889999999999999999999999986       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                       .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++++... 
T Consensus        87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-  156 (243)
T 2q7f_A           87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-  156 (243)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-
T ss_pred             -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence             34567888999999999999999999999999862        22345788999999999999999999999998642 


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                            +.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..+++++
T Consensus       157 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          157 ------ND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             ------TC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             ------cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                  22   335688999999999999999999999875        3445678899999999999999999999999


Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124          255 LDIMTKTVGPDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~  283 (394)
                      +++        .|....++..++.+....
T Consensus       220 ~~~--------~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          220 IDI--------QPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHH--------CTTCHHHHHHHTC-----
T ss_pred             Hcc--------CcchHHHHHHHHHHHhhc
Confidence            984        345555666665554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=3.6e-20  Score=148.61  Aligned_cols=205  Identities=12%  Similarity=0.056  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+.++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..      
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------  100 (252)
T 2ho1_A           35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------  100 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Confidence            34888999999999999999999999999986        3455788999999999999999999999999986      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .|....++..+|.++...|++++|+.++++++. .       +..+....++..+|.++...|++++|+.++++++..
T Consensus       101 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          101 --DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D-------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C-------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C-------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence              233456788999999999999999999999886 1       112223456788999999999999999999999875


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                              .|....++..+|.++...|++++|...+++++.        ..|.....+..++.++...|++++|..++++
T Consensus       171 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          171 --------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             --------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                    344567889999999999999999999999876        2455677888999999999999999999999


Q ss_pred             HHHHH
Q 016124          296 ALYIR  300 (394)
Q Consensus       296 a~~~~  300 (394)
                      +++..
T Consensus       235 ~~~~~  239 (252)
T 2ho1_A          235 LKRLY  239 (252)
T ss_dssp             HHHHC
T ss_pred             HHHHC
Confidence            98754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.88  E-value=9.7e-22  Score=159.95  Aligned_cols=260  Identities=14%  Similarity=0.032  Sum_probs=198.0

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  100 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  100 (394)
                      .++......|++++|+..+++++...    ..++|....++..+|.++...|++++|+..|++++..        .|...
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~   77 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP   77 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred             ceeeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence            34555667799999999999998752    2345678889999999999999999999999999987        45567


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++++..       
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------  142 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-------  142 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------
Confidence            88999999999999999999999999987        233356789999999999999999999999998642       


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      +.+...   . ...+....|++++|+..+++++...     +..+.    ...++.++...++.++|+..+++++.....
T Consensus       143 ~~~~~~---~-~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  209 (275)
T 1xnf_A          143 NDPFRS---L-WLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTS  209 (275)
T ss_dssp             TCHHHH---H-HHHHHHHHHCHHHHHHHHHHHHHHS-----CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             CChHHH---H-HHHHHHHhcCHHHHHHHHHHHHhcC-----CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence            222211   2 2234466799999999999988752     12221    234777888899999999999888763322


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                      .    .+....++..+|.++...|++++|+.++++++...     |++.      ...+.++...|+++ +|++.+
T Consensus       210 ~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~------~~~~~~~~~l~~~~-~a~~~~  269 (275)
T 1xnf_A          210 L----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VHNF------VEHRYALLELSLLG-QDQDDL  269 (275)
T ss_dssp             H----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CTTC------HHHHHHHHHHHHHH-HC----
T ss_pred             c----cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----chhH------HHHHHHHHHHHHHH-hhHHHH
Confidence            1    22346788999999999999999999999998743     3222      23356677777777 777665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=3.5e-21  Score=168.15  Aligned_cols=219  Identities=16%  Similarity=0.100  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH
Q 016124           34 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  112 (394)
Q Consensus        34 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (394)
                      .....+++++...+.... ..+..+.++..+|.++...|++ ++|+..|++++++        .|....++..+|.+|..
T Consensus        79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence            444556666665554432 2345677899999999999999 9999999999987        46667899999999999


Q ss_pred             hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhcccCCCchH
Q 016124          113 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDS  183 (394)
Q Consensus       113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~  183 (394)
                      .|++++|+.+|++++++        .|. ..++.++|.++...         |++++|+..+++++++..       +. 
T Consensus       150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~-  212 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-------LD-  212 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-------TC-
T ss_pred             cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-------CC-
Confidence            99999999999999976        233 47899999999999         999999999999999742       22 


Q ss_pred             HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          184 IMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHP---SFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       184 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                        ..++.++|.++...        |++++|+..|++++.+        .|   ....++.++|.++...|++++|+..|+
T Consensus       213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence              34678999999999        9999999999999986        34   678899999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                      +++.+        .|....++..++.++...|++++|+..+.+.
T Consensus       283 ~al~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          283 QAAAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99985        4666788999999999999999998876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=4e-20  Score=148.35  Aligned_cols=207  Identities=13%  Similarity=0.046  Sum_probs=177.2

Q ss_pred             CchHH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           11 DEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        11 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      .+|.. +.++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++..  
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--  100 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--  100 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence            34554 8889999999999999999999999999862        333567889999999999999999999999987  


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                            .|....++..+|.++...|++++|+.++++++.      .+..|....++..+|.++...|++++|+.++++++
T Consensus       101 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          101 ------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  344567889999999999999999999999886      12356677789999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  249 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  249 (394)
                      +..       +..   ..++..+|.++...|++++|+.++++++..        .|.....+..++.++...|++++|..
T Consensus       169 ~~~-------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          169 RLN-------RNQ---PSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHC-------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcC-------ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            863       222   345688999999999999999999998763        34556778899999999999999999


Q ss_pred             HHHHHHHH
Q 016124          250 LLRICLDI  257 (394)
Q Consensus       250 ~~~~a~~~  257 (394)
                      ++++++..
T Consensus       231 ~~~~~~~~  238 (252)
T 2ho1_A          231 YGLQLKRL  238 (252)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999884

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.88  E-value=6.2e-21  Score=155.18  Aligned_cols=258  Identities=13%  Similarity=0.031  Sum_probs=195.4

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                      +......|++++|+..+++++...    ..++|....++..+|.++...|++++|+.+|++++..        .|....+
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~   79 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV   79 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence            334456689999999999988751    1234567889999999999999999999999999987        3334567


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      +..+|.++...|++++|+.++++++++...       .   ..++..+|.++...|++++|+.++++++...     +++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~  144 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------Y---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND  144 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCcc-------c---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC
Confidence            899999999999999999999999986422       2   3466899999999999999999999998852     222


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  304 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  304 (394)
                         ......++ +....|++++|+..+++++...     +..   .. ...++.++...++.++|+..+++++...... 
T Consensus       145 ---~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-  210 (275)
T 1xnf_A          145 ---PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKE---QW-GWNIVEFYLGNISEQTLMERLKADATDNTSL-  210 (275)
T ss_dssp             ---HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCC---ST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred             ---hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcC-----Ccc---hH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence               22222333 4467799999999999988742     121   22 2457778888999999999999887654321 


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhH
Q 016124          305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  378 (394)
Q Consensus       305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  378 (394)
                         .+....++..+|.++...|+++ +|+.+|++++.+.     +.+      +...+.++...|++++|++.+
T Consensus       211 ---~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~-----p~~------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 ---AEHLSETNFYLGKYYLSLGDLD-SATALFKLAVANN-----VHN------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTC-----CTT------CHHHHHHHHHHHHHHHC----
T ss_pred             ---cccccHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCC-----chh------HHHHHHHHHHHHHHHhhHHHH
Confidence               1344678999999999999999 9999999998642     222      123366788899999998887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=2e-20  Score=142.41  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=148.2

Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      .+.++.++|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++....     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-----   70 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-----   70 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----
Confidence            4678999999999999999999999999987        455567899999999999999999999999988632     


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                        +.   ..++..+|.++...++++.|...+.+++..        .|....++..+|.++...|++++|+..|++++++ 
T Consensus        71 --~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-  136 (184)
T 3vtx_A           71 --TS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-  136 (184)
T ss_dssp             --CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             --hh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence              22   345578999999999999999999999875        4556678899999999999999999999999984 


Q ss_pred             HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                             +|....++.++|.++...|++++|+..|++++++.
T Consensus       137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                   46778899999999999999999999999999853

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=3.9e-21  Score=174.09  Aligned_cols=176  Identities=21%  Similarity=0.265  Sum_probs=157.3

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ..|+.+.+++++|.++..+|++++|+.+|++++++        .|....++.++|.++..+|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            57889999999999999999999999999999987        2445678999999999999999999999999997   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           .|....++.++|.++..+|++++|+..|++++++        +|....++.++|.++..+|++++|+..|+++++
T Consensus        73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 5677889999999999999999999999999987        456677899999999999999999999999999


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  220 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  220 (394)
                      +.       |+.   ..++.++|.++...|++++|++.+++++++.....
T Consensus       140 l~-------P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          140 LK-------PDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL  179 (723)
T ss_dssp             HC-------SCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             hC-------CCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence            73       333   45678999999999999999999999999876543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=7.7e-20  Score=143.94  Aligned_cols=206  Identities=11%  Similarity=0.016  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            4566788999999999999999999999999986        3455778999999999999999999999999986    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                          .|....++..+|.++... |++++|+.+++++++ .       +..+....++..+|.++...|++++|+.+++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                233455788999999999 999999999999987 1       112222456688999999999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHH
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      +..        .|....++..+|.++...|++++|...+++++...        | .....+..++.++...|+.++|..
T Consensus       140 ~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          140 LAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            875        34456788999999999999999999999998842        3 445567788899999999999999


Q ss_pred             HHHHHHHH
Q 016124          292 LVLEALYI  299 (394)
Q Consensus       292 ~~~~a~~~  299 (394)
                      +++.+...
T Consensus       204 ~~~~~~~~  211 (225)
T 2vq2_A          204 YEAQLQAN  211 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=1.7e-19  Score=141.92  Aligned_cols=207  Identities=15%  Similarity=0.083  Sum_probs=174.7

Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      ..|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++.... 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-   73 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-   73 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-
Confidence            35677889999999999999999999999999986        233356788999999999999999999999998632 


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  253 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  253 (394)
                            +.   ..++..+|.++... |++++|+.++++++.      .+..|....++..+|.++...|++++|+.++++
T Consensus        74 ------~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  138 (225)
T 2vq2_A           74 ------DS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR  138 (225)
T ss_dssp             ------TC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------CC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  22   34568899999999 999999999999886      234677788899999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                      ++..        .|....++..+|.++...|++++|...+++++...     + ++   ...+..++.++...|+.+ +|
T Consensus       139 ~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~-~a  201 (225)
T 2vq2_A          139 SLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQ---ADDLLLGWKIAKALGNAQ-AA  201 (225)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHH-HH
T ss_pred             HHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCC---HHHHHHHHHHHHhcCcHH-HH
Confidence            9884        34556788999999999999999999999998865     3 33   345677888889999988 89


Q ss_pred             HHHHHHHHHH
Q 016124          333 LELLKRVLRI  342 (394)
Q Consensus       333 ~~~~~~al~~  342 (394)
                      ..+++.+...
T Consensus       202 ~~~~~~~~~~  211 (225)
T 2vq2_A          202 YEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888887754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=2.9e-20  Score=141.51  Aligned_cols=166  Identities=17%  Similarity=0.264  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..+++.+|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++..        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            467899999999999999999999999987        5667889999999999999999999999999876        


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      .|....++..+|.++...++++.|...+.+++.+..       +.   ..++..+|.++...|++++|+..|++++++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-------~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--  136 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT-------VY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--  136 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------cc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence            334456788899999999999999999999998642       22   345688999999999999999999999986  


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                            +|....++.++|.+|...|++++|+..|++++++
T Consensus       137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                  4667789999999999999999999999999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=7.3e-21  Score=172.32  Aligned_cols=176  Identities=16%  Similarity=0.252  Sum_probs=158.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           53 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        53 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      ..|..+.+++++|.++..+|++++|+..|++++++        .|....++.++|.++..+|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            35788899999999999999999999999999997        5777899999999999999999999999999987   


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                           +|....++.++|.++..+|++++|+..|++++++..       +.   ..++.++|.++..+|++++|+..|+++
T Consensus        73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AF---ADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 456677899999999999999999999999999742       22   457799999999999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  262 (394)
                      +++        .|....++.++|.++...|++++|.+.+++++++.....
T Consensus       138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL  179 (723)
T ss_dssp             HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence            986        567788999999999999999999999999999876543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=1.9e-20  Score=163.60  Aligned_cols=221  Identities=14%  Similarity=0.016  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH-HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Q 016124           76 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  154 (394)
Q Consensus        76 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  154 (394)
                      .....+++++...+.... ..+..+.++..+|.++...|++ ++|+.+|++++++        .|....++..+|.+|..
T Consensus        79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence            344445555555544332 4567788999999999999999 9999999999987        34556789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124          155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV---------GRGQEGRELLEECLLITEKYKGKEHP  225 (394)
Q Consensus       155 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~  225 (394)
                      .|++++|+.+|++++++       .|+    ..++.++|.++...         |++++|+..+++++++        .|
T Consensus       150 ~g~~~~A~~~~~~al~~-------~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p  210 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH-------CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DV  210 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT-------CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             cCCHHHHHHHHHHHHhh-------CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CC
Confidence            99999999999999984       234    25678999999999         9999999999999986        45


Q ss_pred             cHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          226 SFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                      ....++.++|.++...        |++++|+..|++++.+.     +..+....++.++|.++...|++++|+..|++++
T Consensus       211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6678899999999999        99999999999999852     1112778899999999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124          298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  338 (394)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~  338 (394)
                      ++.        |....++..++.++...|+++ +|++.+.+
T Consensus       286 ~l~--------p~~~~a~~~l~~~~~~lg~~~-eAi~~~~~  317 (474)
T 4abn_A          286 ALD--------PAWPEPQQREQQLLEFLSRLT-SLLESKGK  317 (474)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHHHHHH-HHHHHTTT
T ss_pred             HhC--------CCCHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence            864        444567889999999999888 88776544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=2.1e-20  Score=150.63  Aligned_cols=212  Identities=13%  Similarity=0.063  Sum_probs=179.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +.....++.+|..+...|++++|+..|+++++.       .|+++....++..+|.++...|++++|+..|++++...  
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--   82 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--   82 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--
Confidence            344567899999999999999999999999874       34555556778999999999999999999999999863  


Q ss_pred             hhCCCCccHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHH--------------HHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--------------LHL  276 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l  276 (394)
                         ++++....++..+|.++..        .|++++|+..|++++...     ++++....+.              ..+
T Consensus        83 ---p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~l  154 (261)
T 3qky_A           83 ---QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEA  154 (261)
T ss_dssp             ---TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence               4566778899999999999        999999999999999853     4445555454              889


Q ss_pred             HHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHHHhh
Q 016124          277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQERE  346 (394)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~~A~~~~~~al~~~~~~  346 (394)
                      |.+|...|++++|+..|++++...     |+++....++..+|.++...          |+++ +|+..|+++++..   
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~-~A~~~~~~~~~~~---  225 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYR-RAVELYERLLQIF---  225 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHHC---
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHH-HHHHHHHHHHHHC---
Confidence            999999999999999999999865     66666788999999999987          7778 9999999998753   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCchhhhhhH
Q 016124          347 FGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  378 (394)
Q Consensus       347 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  378 (394)
                        ++++....+...++.++...++++++..+.
T Consensus       226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  255 (261)
T 3qky_A          226 --PDSPLLRTAEELYTRARQRLTELEGDASLA  255 (261)
T ss_dssp             --TTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence              667888889999999999999998877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=2e-20  Score=150.83  Aligned_cols=210  Identities=15%  Similarity=0.107  Sum_probs=175.2

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|..+..++.+|..++..|++++|+..|++++..     .++++....+++.+|.++...|++++|+..|++++..    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----   81 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----   81 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence            4455677899999999999999999999999875     3455566788999999999999999999999999987    


Q ss_pred             cCCCCcchHhhhHhHHHHHHH--------hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH--------------HHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIK--------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAM--------------CSLA  149 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la  149 (394)
                       .++++....+++.+|.++..        .|++++|+..|++++...     ++++....+.              ..+|
T Consensus        82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34566778899999999999        999999999999999873     3444444444              8899


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHh
Q 016124          150 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----------GRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       150 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~  219 (394)
                      .+|...|++++|+..|+++++..       |+++....++..+|.+|...          |++++|+..+++++...   
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---  225 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAY-------PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---  225 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHccCHHHHHHHHHHHHHHC-------CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---
Confidence            99999999999999999999864       34344456778999999977          89999999999998763   


Q ss_pred             hCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124          220 KGKEHPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                        ++++....+...++.++...++++++.
T Consensus       226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          226 --PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             --TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence              466777788888898888888876654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.87  E-value=7.1e-21  Score=164.18  Aligned_cols=152  Identities=10%  Similarity=-0.028  Sum_probs=145.6

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 016124          233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  312 (394)
Q Consensus       233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  312 (394)
                      ..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.+..+|++||.++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34555778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          313 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       313 ~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      .++.+||.+|..+|+++ +|+.+|++|+++.+..+|++||.+..+...++.++..+|++++|...|+++.+-.
T Consensus       394 ~~l~nLa~~~~~~G~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIE-VGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999999999999999999999999999999999986543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.86  E-value=1.8e-20  Score=161.60  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=146.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  269 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  269 (394)
                      ...+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||.+
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                      +.++.+||.+|..+|++++|+.++++|+++.+..+|++||.+......++.++..++.++ +|...|+++.+..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~-~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR-QNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999987644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.84  E-value=1.1e-18  Score=137.59  Aligned_cols=188  Identities=10%  Similarity=0.040  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..+..+|.++...|++++|+..|++++.+.       ++....++..+|.++...|++++|+.++++++..        .
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            678899999999999999999999999872       2134467778999999999999999999999975        4


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      |....++..+|.++...|++++|+..+++++++.+..   .........++.++|.++...|++++|+..+++++++   
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---  146 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN---ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---  146 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence            5667889999999999999999999999999975321   0011234567899999999999999999999999874   


Q ss_pred             hhCCCCcc--HHHHHHHHHHHHHHcccH---------------------------HHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124          219 YKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPDDQSI  269 (394)
Q Consensus       219 ~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~~~~~~~~  269 (394)
                           +|.  ...++.++|.++...|+.                           ++|+.++++++++        .|..
T Consensus       147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~  213 (228)
T 4i17_A          147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNR  213 (228)
T ss_dssp             -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCC
Confidence                 577  788999999999999988                           7888888888874        3444


Q ss_pred             hHHHHHHHHHH
Q 016124          270 SFPMLHLGITL  280 (394)
Q Consensus       270 ~~~~~~la~~~  280 (394)
                      ..+...++.+.
T Consensus       214 ~~~~~~l~~i~  224 (228)
T 4i17_A          214 TEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.83  E-value=1.8e-19  Score=156.38  Aligned_cols=295  Identities=13%  Similarity=0.063  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHhhhch---HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHH-
Q 016124           18 ILLHMGSMYSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITIL-   88 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~-   88 (394)
                      +++.+|.+|...|++   ++|+.+|+++++.           ...+++.+|.++...|     ++++|+.+|+++++.- 
T Consensus        37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~  105 (452)
T 3e4b_A           37 AQVGLADIQVGTRDPAQIKQAEATYRAAADT-----------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE  105 (452)
T ss_dssp             GGGTCC---------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            345566666666666   6666666666542           1234556666444443     5666666666665420 


Q ss_pred             -----------HHhcC--C-----------CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124           89 -----------ELNRG--T-----------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  144 (394)
Q Consensus        89 -----------~~~~~--~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  144 (394)
                                 ....+  +           ..+....+.+.+|.+|...+.++++..........   . ...+|.   +
T Consensus       106 ~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a-~~~~~~---a  178 (452)
T 3e4b_A          106 GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA---A-LNTTDI---C  178 (452)
T ss_dssp             SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---H-TTTCTT---H
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH---H-HcCCHH---H
Confidence                       00000  0           00112345566667777666555554443222222   1 112333   7


Q ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHH
Q 016124          145 MCSLAHAKCANG---NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITE  217 (394)
Q Consensus       145 ~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~  217 (394)
                      +..+|.+|...|   ++++|+.+|+++.+.       ++..   ...+.++|.+|...    +++++|+.+|+++.    
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-------g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----  244 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSR-------GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA----  244 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----
Confidence            889999999999   999999999999874       2222   23347789988665    79999999999875    


Q ss_pred             HhhCCCCccHHHHHHHHHHH-H--HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc-----ChHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAAS-Y--SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-----RDKEA  289 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A  289 (394)
                             +....+++++|.+ +  ...+++++|+.+|+++.+          .....++.+||.+|. .|     ++++|
T Consensus       245 -------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          245 -------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----------ADQPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             -------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             -------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence                   2334678899998 4  578999999999999986          225678899999998 66     99999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 016124          290 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL  365 (394)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  365 (394)
                      +.+|+++.        ++   ...+.++||.+|..    ..+++ +|+.+|+++.+       ..+   ..+..+||.+|
T Consensus       307 ~~~~~~Aa--------~g---~~~A~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y  364 (452)
T 3e4b_A          307 EAHFEKAV--------GR---EVAADYYLGQIYRRGYLGKVYPQ-KALDHLLTAAR-------NGQ---NSADFAIAQLF  364 (452)
T ss_dssp             HHHHHTTT--------TT---CHHHHHHHHHHHHTTTTSSCCHH-HHHHHHHHHHT-------TTC---TTHHHHHHHHH
T ss_pred             HHHHHHHh--------CC---CHHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHh-------hCh---HHHHHHHHHHH
Confidence            99999886        12   34578899998887    23667 89999998875       222   45678899998


Q ss_pred             HH----hcCchhhhhhHHHHHHH
Q 016124          366 DK----LGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       366 ~~----~g~~~~A~~~~~~a~~~  384 (394)
                      ..    ..++.+|..+|+++.+.
T Consensus       365 ~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          365 SQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHC
Confidence            85    45889999999988754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.83  E-value=1.1e-19  Score=157.85  Aligned_cols=281  Identities=12%  Similarity=0.072  Sum_probs=153.2

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhch---hHHHHHHHHHHHHHHHhcCCCC
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ..+|..+...|++++|+.+|+++.+.     +     ...+++.+|.+|...|++   ++|+.+|+++++.         
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL-----G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----T-----CCTGGGTCC----------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------
Confidence            45789999999999999999998764     1     134577889999999998   9999999998753         


Q ss_pred             cchHhhhHhHHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCH-------------
Q 016124           97 ADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA-------------  158 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------  158 (394)
                        .+.+++.+|.++...|     ++++|+.+|+++++.       +++.   ++.++|.+|...+..             
T Consensus        68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a  135 (452)
T 3e4b_A           68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQW  135 (452)
T ss_dssp             -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence              3467889999777766     889999999999863       1111   444555555554433             


Q ss_pred             ----------------------HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 016124          159 ----------------------EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG---RGQEGRELLEECL  213 (394)
Q Consensus       159 ----------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~  213 (394)
                                            +++............     ..++.    ++.++|.+|...|   ++++|+.+|+++.
T Consensus       136 ~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-----~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          136 QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-----NTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT-----TTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-----cCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence                                  333322222111111     11211    4456666666666   6666666666665


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-H--HhhcC
Q 016124          214 LITEKYKGKEHPSFVTHLLNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-L--YHLNR  285 (394)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~  285 (394)
                      +.        .+..+..++++|.+| ..|     ++++|+.+|+++.           +....++.+||.+ +  ...|+
T Consensus       207 ~~--------g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d  266 (452)
T 3e4b_A          207 SR--------GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGD  266 (452)
T ss_dssp             HT--------TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCC
T ss_pred             HC--------CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCC
Confidence            42        223334445666665 333     4556666665542           2334566677776 3  35667


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 016124          286 DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG-----EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK  360 (394)
Q Consensus       286 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  360 (394)
                      +++|+.+|+++.+       .+   ...++.+||.+|. .|     +++ +|+.+|+++.        +.   ...++.+
T Consensus       267 ~~~A~~~~~~Aa~-------~g---~~~A~~~Lg~~y~-~G~g~~~d~~-~A~~~~~~Aa--------~g---~~~A~~~  323 (452)
T 3e4b_A          267 VEQMMKYLDNGRA-------AD---QPRAELLLGKLYY-EGKWVPADAK-AAEAHFEKAV--------GR---EVAADYY  323 (452)
T ss_dssp             HHHHHHHHHHHHH-------TT---CHHHHHHHHHHHH-HCSSSCCCHH-HHHHHHHTTT--------TT---CHHHHHH
T ss_pred             HHHHHHHHHHHHH-------CC---CHHHHHHHHHHHH-cCCCCCCCHH-HHHHHHHHHh--------CC---CHHHHHH
Confidence            7777777777654       12   2345667777776 44     555 6666666554        12   2456777


Q ss_pred             HHHHHHH----hcCchhhhhhHHHHHH
Q 016124          361 VVSYLDK----LGRKEEKFPLKKRLSN  383 (394)
Q Consensus       361 la~~~~~----~g~~~~A~~~~~~a~~  383 (394)
                      ||.+|..    ..++++|..+|+++.+
T Consensus       324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          324 LGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            7777766    3377777777777765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.82  E-value=1.8e-18  Score=136.42  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=142.4

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      +..+..+|.++...|++++|+..|++++.+.     +  +....++.++|.++...|++++|+..++++++.       .
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~   72 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----N--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------N   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----T--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----C--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------C
Confidence            4788999999999999999999999999872     1  022256777999999999999999999999974       2


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc----cHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----SFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                      |+.   ..++..+|.++...|++++|+..+++++.+.     ++++    ....++..+|.++...|++++|+..|++++
T Consensus        73 p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           73 YNL---ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             CSH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cch---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence            332   4567899999999999999999999999862     2222    123678999999999999999999999998


Q ss_pred             HHHHhhcCCCCCc--chHHHHHHHHHHHhhcCh---------------------------HHHHHHHHHHHHHH
Q 016124          256 DIMTKTVGPDDQS--ISFPMLHLGITLYHLNRD---------------------------KEAEKLVLEALYIR  300 (394)
Q Consensus       256 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~  300 (394)
                      +        ..|.  ...++.++|.++...|+.                           ++|+.++++++++.
T Consensus       145 ~--------~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          145 D--------VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             T--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             h--------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7        3567  778999999999999988                           78888888887754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.82  E-value=5.2e-18  Score=131.17  Aligned_cols=193  Identities=12%  Similarity=0.066  Sum_probs=154.1

Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhH
Q 016124           27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  106 (394)
Q Consensus        27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  106 (394)
                      +..|++++|...++...       + +.+....++..+|.++...|++++|+.++++++.+.+...  +.+....++..+
T Consensus         3 ~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL-------A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHH-------T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc-------C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence            56789999998554331       1 2235678899999999999999999999999999987653  456778899999


Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  186 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  186 (394)
                      |.++...|++++|+.++++++.+.+.. +.+......++.++|.++...|++++|+.++++++.+.+..    .++....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence            999999999999999999999998753 22333678889999999999999999999999999988753    4556667


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      .++.++|.++...|++++|..++++++.+.+...  +......++..++.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~  195 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNG  195 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccc
Confidence            7789999999999999999999999999987754  22334444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.81  E-value=6.3e-18  Score=130.71  Aligned_cols=194  Identities=15%  Similarity=0.059  Sum_probs=153.6

Q ss_pred             HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHH
Q 016124          111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  190 (394)
Q Consensus       111 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  190 (394)
                      ...|++++|...++...        .+.+....++..+|.++...|++++|+.++++++.+.+..    .+++....++.
T Consensus         3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~   70 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS----GDHTAEHRALH   70 (203)
T ss_dssp             ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----CCcHHHHHHHH
Confidence            46789999998554331        1234567889999999999999999999999999998864    46677788899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124          191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  270 (394)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  270 (394)
                      ++|.++...|++++|+.++++++.+.+... .+......++.++|.++...|++++|+.++++++.+....  .+.....
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  147 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA  147 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence            999999999999999999999999987532 1222667889999999999999999999999999986654  2333456


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  321 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  321 (394)
                      .++..+|.++...|++++|..++++++++....  ++......++..++.+
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccch
Confidence            678899999999999999999999999998775  3334445555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=2.1e-17  Score=147.13  Aligned_cols=206  Identities=14%  Similarity=0.124  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124          143 MAMCSLAHAKCA-------NGNAE-------EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  208 (394)
Q Consensus       143 ~~~~~la~~~~~-------~g~~~-------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  208 (394)
                      .++..+|..+..       .|+++       +|...++++++.      ..|+.   ..++..++.++...|++++|...
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------~~p~~---~~l~~~~~~~~~~~g~~~~A~~~  343 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN---MLLYFAYADYEESRMKYEKVHSI  343 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT------TCSSC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH------hCccc---HHHHHHHHHHHHhcCCHHHHHHH
Confidence            345666666664       68876       777888877751      12232   34568899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHhhcCh
Q 016124          209 LEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRD  286 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  286 (394)
                      |++++.+        .|. ...++..++.++...|++++|...|+++++.        .|.....+...+.+ +...|++
T Consensus       344 ~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          344 YNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             HHHHHHS--------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCH
T ss_pred             HHHHhCc--------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCCh
Confidence            9999874        222 2357889999999999999999999999872        23334444444444 3468999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHH
Q 016124          287 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE-VMLTLKKVVSYL  365 (394)
Q Consensus       287 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~  365 (394)
                      ++|...|+++++..     |++   ...+..++.++...|+.+ +|...|++++..     .+.+|. ....+...+...
T Consensus       408 ~~A~~~~e~al~~~-----p~~---~~~~~~~~~~~~~~g~~~-~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e  473 (530)
T 2ooe_A          408 SVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDN-NTRVLFERVLTS-----GSLPPEKSGEIWARFLAFE  473 (530)
T ss_dssp             HHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHTTTTCHH-HHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHhCCCHh-hHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHH
Confidence            99999999999875     343   457888999999999999 999999999874     223332 345677778888


Q ss_pred             HHhcCchhhhhhHHHHHHHHHH
Q 016124          366 DKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       366 ~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ...|+.+.+..++.++++..++
T Consensus       474 ~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          474 SNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCch
Confidence            8899999999999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.81  E-value=2.9e-18  Score=140.45  Aligned_cols=196  Identities=10%  Similarity=0.022  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL---LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      +.....+...+..+...|++++|...+++++...     +..+.   ....+..+|.++...|++++|+.++++++.+..
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~  146 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence            4444555667888999999999999999988742     22222   244566799999999999999999999998532


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      .  ..+......++.++|.+|...|++++|+.+|+++++..+.. +.+.+..+.++.++|.+|..+|++++|+.++++++
T Consensus       147 ~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          147 T--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             C--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             c--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2  12223346689999999999999999999999999988764 23567788899999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHhh
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLLITEKYK  220 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~  220 (394)
                      ++.+..    .+......++.++|.++..+|+ +++|+.++++++.+.+...
T Consensus       224 ~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          224 EISCRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             HHHHHT----TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHc----CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            998764    3445567889999999999995 6999999999999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.81  E-value=7.4e-18  Score=138.06  Aligned_cols=197  Identities=9%  Similarity=0.013  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |.....+...+..+...|++++|+..+.++++..+.  .+........+..+|.++...|++++|+.++++++...... 
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-  148 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence            344455677888999999999999999999875321  11123455567789999999999999999999999764321 


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                       .+......++..+|.+|...|++++|+.+|++++.+.+..  ++.+. ...++.++|.+|..+|++++|+.++++++++
T Consensus       149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             2233456789999999999999999999999999987764  23333 3378999999999999999999999999998


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY  219 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  219 (394)
                      ....    .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       226 ~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          226 SCRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHT----TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhc----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            7642    34445577889999999999999999 88899999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.81  E-value=1.4e-17  Score=136.46  Aligned_cols=197  Identities=11%  Similarity=-0.065  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +.....+...+..+...|++++|+..+.++++....    .+........+..+|.++...|++++|+.++++++.....
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  147 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            344455667888999999999999999999885432    1223344555678999999999999999999999876432


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                      .  .+......++.++|.+|...|++++|+.++++++.+....  ++.+. ...++.++|.+|..+|++++|+.++++++
T Consensus       148 ~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          148 G--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             S--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            1  1333457789999999999999999999999999877654  22222 23788999999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHHHhh
Q 016124          298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL-LELLKRVLRIQERE  346 (394)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A-~~~~~~al~~~~~~  346 (394)
                      .+....  .+....+.++..+|.++...|+++ +| ..++++++.+.+..
T Consensus       224 ~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~-~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          224 EISCRI--NSMALIGQLYYQRGECLRKLEYEE-AEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHT--TBCSSHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHh
Confidence            988542  445556888999999999999999 99 88899999988763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.81  E-value=1.6e-17  Score=136.02  Aligned_cols=194  Identities=10%  Similarity=0.044  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch---HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      .....+...+..+...|++++|+..+++++...     +..+..   ...+..+|.++...|++++|+.++++++.+...
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence            344455566788899999999999999988641     122222   345556899999999999999999999985332


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                        ..+......++.++|.+|...|++++|+.+++++++..+..   ..+.+....++.++|.+|..+|++++|+.+++++
T Consensus       148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              12333456789999999999999999999999999988763   3467777889999999999999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhh
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN-FVEAERLLRICLDIMTKT  261 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~  261 (394)
                      +++.....  +.+..+.++.++|.++...|+ +++|+.++++++.+.+..
T Consensus       223 l~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          223 IEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            99987654  456678899999999999995 699999999999988765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=6.7e-17  Score=143.88  Aligned_cols=318  Identities=10%  Similarity=0.011  Sum_probs=204.9

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|....++..++.. ...|++++|...|++++..        .|.....+..++..+...|++++|...|++++..    
T Consensus         9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            45556677778874 7789999999999999985        3455677888999999999999999999999875    


Q ss_pred             cCCCCcchHhhhHhHHH-HHHHhCcHHHHHH----HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---------CCC
Q 016124           92 RGTESADLVLPLFSLGS-LFIKEGKAVDAES----VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGN  157 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~  157 (394)
                          .|. ...+...+. .....|++++|.+    .|++++...    +. ++.....+...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~----g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI----GM-EIMSYQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT----TT-STTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC----CC-CcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence                232 334444443 3334565555544    444433221    10 01001111111111111         122


Q ss_pred             HHHHHHHHHHHHHH------------------------------------------------HHhccc----CCC-----
Q 016124          158 AEEAVELYKKALRV------------------------------------------------IKDSNY----MSL-----  180 (394)
Q Consensus       158 ~~~A~~~~~~a~~~------------------------------------------------~~~~~~----~~~-----  180 (394)
                      +++|..+|++++..                                                ......    ..+     
T Consensus       146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~  225 (530)
T 2ooe_A          146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ  225 (530)
T ss_dssp             HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence            22222222222110                                                000000    000     


Q ss_pred             -----------------------c------------------hHHHHHHHHHHHHHHHH-------cCChH-------HH
Q 016124          181 -----------------------D------------------DSIMENMRIDLAELLHI-------VGRGQ-------EG  205 (394)
Q Consensus       181 -----------------------~------------------~~~~~~~~~~la~~~~~-------~g~~~-------~A  205 (394)
                                             +                  .|....++..+|..+..       .|+++       +|
T Consensus       226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A  305 (530)
T 2ooe_A          226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA  305 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence                                   0                  00113345667777765       68887       67


Q ss_pred             HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhc
Q 016124          206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLN  284 (394)
Q Consensus       206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g  284 (394)
                      +..+++++..       ..|.....+..++.++...|++++|...|++++.+        .|.. ..++..++.++...|
T Consensus       306 ~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          306 ANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAE  370 (530)
T ss_dssp             HHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHHHHHHHHHhc
Confidence            7777776641       24667788999999999999999999999999983        2332 357889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 016124          285 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI-QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS  363 (394)
Q Consensus       285 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  363 (394)
                      ++++|...|++++...     +..   ...+...+.+ +...|+.+ +|...|+++++..     +++   ..++..++.
T Consensus       371 ~~~~A~~~~~~Al~~~-----~~~---~~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~-----p~~---~~~~~~~~~  433 (530)
T 2ooe_A          371 GIKSGRMIFKKAREDA-----RTR---HHVYVTAALMEYYCSKDKS-VAFKIFELGLKKY-----GDI---PEYVLAYID  433 (530)
T ss_dssp             HHHHHHHHHHHHHTCT-----TCC---THHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH-----TTC---HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcc-----CCc---hHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHC-----CCC---HHHHHHHHH
Confidence            9999999999998632     222   2233344443 34689998 9999999999864     233   467788999


Q ss_pred             HHHHhcCchhhhhhHHHHHHH
Q 016124          364 YLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       364 ~~~~~g~~~~A~~~~~~a~~~  384 (394)
                      ++...|+.++|..+|++++..
T Consensus       434 ~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          434 YLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHhCCCHhhHHHHHHHHHhc
Confidence            999999999999999999874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-16  Score=138.53  Aligned_cols=242  Identities=10%  Similarity=0.035  Sum_probs=196.5

Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC---------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE---------NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      +....|..+...|+|++|++.|.++++..+.....         .......++..+|.+|...|++++|.+++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34556788889999999999999998764332100         012344578899999999999999999999999988


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                      ...    ++......+...++.++...|++++|+.++++++.+.....  ..+....++.++|.++...|++++|..+++
T Consensus        86 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           86 MQF----AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALIN  159 (434)
T ss_dssp             HTS----CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHc----cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            753    34445556678889999999999999999999999887654  556678899999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                      +++......  .+.+....++..++.+|...|++++|..++++++.+..... .++...+..+..+|.++...|++. +|
T Consensus       160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~-~A  235 (434)
T 4b4t_Q          160 DLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYK-TA  235 (434)
T ss_dssp             HHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHH-HH
T ss_pred             HHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHH-HH
Confidence            998876554  45677888999999999999999999999999999876652 222345677888999999999999 99


Q ss_pred             HHHHHHHHHHHHhhcCCCCHH
Q 016124          333 LELLKRVLRIQEREFGSESEE  353 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~~~~  353 (394)
                      ..+|.++++.+..........
T Consensus       236 ~~~~~~a~~~~~~~~~~~~~~  256 (434)
T 4b4t_Q          236 FSYFFESFESYHNLTTHNSYE  256 (434)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHH
T ss_pred             HHHHHHHHHHhhhhhhhhhHH
Confidence            999999999887765554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=7e-17  Score=133.22  Aligned_cols=223  Identities=14%  Similarity=0.065  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-------hhch-------hHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           33 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-------IGRA-------KKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      ++|+..|++++...        |....++..+|..+..       .|++       ++|...|++++...       .|.
T Consensus        33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~   97 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK   97 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence            68889999998863        4445677778877764       4776       89999999998721       456


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ...++..+|.++...|++++|...|++++.+     .+.++.  .++..+|.++...|++++|...|+++++..      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------  164 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA------  164 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST------
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence            6778999999999999999999999999975     233332  278889999999999999999999998742      


Q ss_pred             CCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                       +..   ..++...+.+.. ..|++++|...|+++++..        |....++..++.++...|++++|..+|++++..
T Consensus       165 -p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          165 -RTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             -TCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             -CCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             222   223334444433 3799999999999999863        445678899999999999999999999999872


Q ss_pred             HHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          258 MTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       258 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .     ...| .....+..++..+...|++++|...++++++..
T Consensus       233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            1     1133 356678888999999999999999999998865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=4.2e-17  Score=134.56  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-------HCCCH-------HHHHHHHHHHHHHHHhcccCCCch
Q 016124          117 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-------ANGNA-------EEAVELYKKALRVIKDSNYMSLDD  182 (394)
Q Consensus       117 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~  182 (394)
                      ++|+..|++++..        .|....++..+|..+.       ..|++       ++|...|++++...      .|+.
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~   98 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTC
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------Cccc
Confidence            6888999999987        3444566777777765       45885       89999999998831      1222


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                         ..++..+|.++...|++++|...|++++.+        +|.... ++.++|.++...|++++|...|++++..    
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----  163 (308)
T 2ond_A           99 ---MLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED----  163 (308)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS----
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Confidence               346688999999999999999999999874        233333 7889999999999999999999999873    


Q ss_pred             cCCCCCcchHHHHHHHHHHH-hhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                          .|.....+...+.+.. ..|++++|...|+++++..     |   .....+..++.++...|+++ +|+..|++++
T Consensus       164 ----~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al  230 (308)
T 2ond_A          164 ----ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----G---DIPEYVLAYIDYLSHLNEDN-NTRVLFERVL  230 (308)
T ss_dssp             ----TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----T---TCHHHHHHHHHHHHTTCCHH-HHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Confidence                2334555555555533 3799999999999999875     3   34567889999999999999 9999999998


Q ss_pred             HHHHhhcCCCCH-HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          341 RIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       341 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ...     .-.| .....+..++..+...|++++|..+++++++..++
T Consensus       231 ~~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          231 TSG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             hcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            631     1123 24567888899999999999999999999988775

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.78  E-value=9.9e-17  Score=125.87  Aligned_cols=177  Identities=12%  Similarity=0.028  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      +..++.+|..++..|++++|+..|++++..     .++++....++..+|.++...|++++|+..|+++++.     .++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence            356789999999999999999999999986     3445556678999999999999999999999999987     345


Q ss_pred             CcchHhhhHhHHHHHHH------------------hCcHHHHHHHHHHHHHHHHHhhCCCchHHH--------------H
Q 016124           96 SADLVLPLFSLGSLFIK------------------EGKAVDAESVFSRILKIYTKVYGENDGRVG--------------M  143 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~  143 (394)
                      ++....+++.+|.++..                  .|++++|+..|+++++..     |+++...              .
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence            55566788889988876                  578999999999998763     2333222              2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      ....+|.+|...|++++|+..|+++++..       |+.+....++..+|.++..+|++++|+..++++..
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            23578999999999999999999999864       44555667889999999999999999999987654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.1e-16  Score=139.13  Aligned_cols=236  Identities=11%  Similarity=0.048  Sum_probs=191.3

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC---------CchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      ....|..+...|+|++|+..|.++++..+....         ...+....++..+|.+|...|++++|.+++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999876432110         01134556789999999999999999999999999876


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      ...  +......+...++.++...|++++|+.++++++.+....  .+.+....++.++|.+|...|++++|..++++++
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            532  222334567778999999999999999999999998764  3455677889999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  249 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  249 (394)
                      ......    .+.+....++..++.+|...|++++|..++++++.+...... .+...+..+..+|.++...|++.+|..
T Consensus       163 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKKL----DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTTS----SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHhc----ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            887653    455667788999999999999999999999999988766531 123346778889999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 016124          250 LLRICLDIMTKTVG  263 (394)
Q Consensus       250 ~~~~a~~~~~~~~~  263 (394)
                      +|.+++........
T Consensus       238 ~~~~a~~~~~~~~~  251 (434)
T 4b4t_Q          238 YFFESFESYHNLTT  251 (434)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhh
Confidence            99999998776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=2.1e-16  Score=124.06  Aligned_cols=179  Identities=13%  Similarity=0.071  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..++.+|..+...|++++|+..|++++..     .++++....++..+|.++...|++++|+..|+++++.     .|++
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~   74 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCC
Confidence            46788899999999999999999999986     3445556788999999999999999999999999987     3456


Q ss_pred             hHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhcccCCCchHH-----------HHHHH
Q 016124          139 GRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSI-----------MENMR  189 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~  189 (394)
                      +....++..+|.++..                  .|++++|+..|+++++..+..    +....           .....
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~----~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS----QYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC----TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC----hhHHHHHHHHHHHHHHHHHHH
Confidence            6666788888888875                  679999999999998864332    11110           11222


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ..+|.+|...|++++|+..|+++++..     ++++....++..+|.++...|++++|+..++.+..
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            578999999999999999999998863     34555668899999999999999999999987766

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.77  E-value=1.4e-17  Score=141.50  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=117.9

Q ss_pred             HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      ..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++.+.+..+|++||.++.++.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124          320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  362 (394)
Q Consensus       320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  362 (394)
                      .+|..+|+++ +|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus       390 ~~~~~qg~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKA-AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999 99999999999999999999999998877664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.77  E-value=1e-17  Score=142.19  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=118.1

Q ss_pred             HHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 016124          197 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  276 (394)
Q Consensus       197 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  276 (394)
                      ...|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||.++.++.+|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124          277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  319 (394)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  319 (394)
                      |.+|..+|++++|+.++++|+++....+|++||.+.....+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988776664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.77  E-value=3.7e-17  Score=124.31  Aligned_cols=172  Identities=15%  Similarity=0.162  Sum_probs=146.0

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +++.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++..   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---   71 (186)
T 3as5_A            3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---   71 (186)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence            345567788999999999999999999999987642        233567889999999999999999999999886   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           .|....++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus        72 -----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           72 -----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence                 3455678899999999999999999999999986        233346788999999999999999999999998


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  216 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  216 (394)
                      ...       +.   ..++..+|.++...|++++|..++++++...
T Consensus       139 ~~~-------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          139 LRP-------NE---GKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCc-------cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            632       22   3466889999999999999999999998875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.76  E-value=7.3e-17  Score=122.68  Aligned_cols=169  Identities=19%  Similarity=0.111  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      .....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------   71 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            45677889999999999999999999988754        4455788999999999999999999999999986      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .|....++..+|.++...|++++|..++++++....       +.   ..++..+|.++...|++++|+.++++++..
T Consensus        72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-------IN---FNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------Hh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence              233456788999999999999999999999998632       22   345688999999999999999999999875


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                              .|....++..+|.++...|++++|..++++++...
T Consensus       140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                    24456788999999999999999999999998864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.76  E-value=2.6e-16  Score=116.86  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=138.9

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      +++..+.++..+|.++...|++++|+.++++++.+.+..  .+......++..+|.++...|++++|+.++++++.+.+.
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            566778899999999999999999999999999998764  344567788999999999999999999999999999876


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                      ..  +.+....++..+|.++...|++++|+.++++++.+.+..  .+.+....++..+|.++...|++++|..+++++++
T Consensus        82 ~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           82 LK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hC--CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            43  445567789999999999999999999999999998764  34566788899999999999999999999999999


Q ss_pred             HHHh
Q 016124          171 VIKD  174 (394)
Q Consensus       171 ~~~~  174 (394)
                      +.++
T Consensus       158 ~~~~  161 (164)
T 3ro3_A          158 ISRE  161 (164)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            8764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.76  E-value=2e-17  Score=140.90  Aligned_cols=134  Identities=9%  Similarity=-0.061  Sum_probs=127.1

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 016124          235 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  314 (394)
Q Consensus       235 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  314 (394)
                      ..-+..+|++++|+..+++++++..+.+|++||.++.++.++|.+|..+|+|++|+.++++++.+.+..+|++||.++..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 016124          315 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG  369 (394)
Q Consensus       315 ~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  369 (394)
                      +++||.+|..+|+++ +|+.++++|+++.+..+|++||.+..++.+|+.+....+
T Consensus       374 l~nLa~~~~~~g~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFP-QAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            999999999999999 999999999999999999999999999999998876543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.76  E-value=2.9e-16  Score=121.49  Aligned_cols=166  Identities=17%  Similarity=0.149  Sum_probs=133.5

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE  163 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  163 (394)
                      +..+...|..+...|++++|+..|++++..        +|....++..                +|.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            345677899999999999999999999987        4666667777                9999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHccc
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  243 (394)
                      .|++++++.       |+.   ..++.++|.++...|++++|+..|++++++        +|....++.++|.+|...|+
T Consensus        76 ~~~~al~~~-------p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           76 FYKELLQKA-------PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence            999999964       222   456789999999999999999999999986        56677899999999987765


Q ss_pred             H--HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          244 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       244 ~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .  ..+...+++++.       +  +....+++.+|.++...|++++|+..|++++++.
T Consensus       138 ~~~~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          138 QEKKKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4  344444444322       1  2223466788999999999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.75  E-value=4.4e-16  Score=115.60  Aligned_cols=157  Identities=15%  Similarity=0.135  Sum_probs=137.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           53 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        53 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      +.+..+.++..+|.++...|++++|+.++++++.+.+...  +......++..+|.++...|++++|+.++++++.+.+.
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999987743  34556678999999999999999999999999999876


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                      .  .+.+....++.++|.++...|++++|+.++++++++.+..    .+++....++..+|.++...|++++|+.+++++
T Consensus        82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4  3455667889999999999999999999999999998764    456677788899999999999999999999999


Q ss_pred             HHHHH
Q 016124          213 LLITE  217 (394)
Q Consensus       213 ~~~~~  217 (394)
                      +++.+
T Consensus       156 ~~~~~  160 (164)
T 3ro3_A          156 LEISR  160 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.75  E-value=1.2e-17  Score=121.79  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=120.1

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      .||.++...|++++|+..+++++..        .|.....++.+|.+|...|++++|+.+|++++++        +|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4788999999999999999988754        5667788899999999999999999999999987        45556


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhhC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL-LEECLLITEKYKG  221 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~  221 (394)
                      .++..+|.+|...|++++|+..|++++++.       |+.   ..++.++|.++...|++++|... +++++++      
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAKL------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence            789999999999999999999999999974       232   34678999999999999887765 5899886      


Q ss_pred             CCCccHHHHHHHHHHHHHHccc
Q 016124          222 KEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~  243 (394)
                        +|....++...+.++...|+
T Consensus       130 --~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 --FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             --STTCHHHHHHHHHHHHTCCC
T ss_pred             --CcCCHHHHHHHHHHHHHhCc
Confidence              35556677788888887775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.75  E-value=1.8e-17  Score=141.18  Aligned_cols=135  Identities=10%  Similarity=-0.041  Sum_probs=127.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124          192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  271 (394)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  271 (394)
                      ...-+..+|++++|+..+++++++.++.+|++||.++.++.++|.+|..+|++++|+.++++++.++++.+|++||.++.
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 016124          272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  326 (394)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  326 (394)
                      .+.+||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+....+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998876543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.75  E-value=1.4e-17  Score=121.48  Aligned_cols=147  Identities=15%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  100 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  100 (394)
                      .||.++...|++++|+..+++++..        .|.....++.+|.+|...|++++|+.+|++++++        +|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4789999999999999999988753        4667778889999999999999999999999997        56778


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhcccCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS  179 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~  179 (394)
                      .++..+|.++...|++++|+..|++++++        +|....++.++|.++...|++++|... +++++++.       
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------
Confidence            89999999999999999999999999987        455567899999999999999887765 58999864       


Q ss_pred             CchHHHHHHHHHHHHHHHHcCC
Q 016124          180 LDDSIMENMRIDLAELLHIVGR  201 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~  201 (394)
                      |+++.   ++...+.++...|+
T Consensus       131 P~~~~---~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPA---VYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHH---HHHHHHHHHHTCCC
T ss_pred             cCCHH---HHHHHHHHHHHhCc
Confidence            34443   34567777777775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.75  E-value=9.5e-18  Score=152.91  Aligned_cols=200  Identities=15%  Similarity=0.040  Sum_probs=158.1

Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhH
Q 016124           27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  106 (394)
Q Consensus        27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  106 (394)
                      ...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++.        .|....+++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            7789999999999999821111111234556678999999999999999999999999987        45667899999


Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124          107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  186 (394)
Q Consensus       107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  186 (394)
                      |.++...|++++|+..|++++++        +|....++.++|.++...|++++ +..|++++++.       ++.   .
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~---~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGV---I  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTC---H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------Cch---H
Confidence            99999999999999999999987        34445678999999999999999 99999999863       222   3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhh
Q 016124          187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMTKT  261 (394)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  261 (394)
                      .++.++|.++...|++++|+..|++++++        +|....++.++|.++...++.+++ ...+++++......
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            46799999999999999999999998864        677888999999999887775555 56666666655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.75  E-value=2e-17  Score=150.73  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=159.6

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  148 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  148 (394)
                      ...|++++|+..+++++...-......+|....++..+|.++...|++++|+..|+++++.        +|....++.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            6789999999999999821111112245677889999999999999999999999999987        34445689999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                      |.++...|++++|+..|++++++..       +.   ..++.++|.++...|++++ +..|++++++        +|...
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l~P-------~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDTFP-------GE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHST-------TC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence            9999999999999999999999743       22   3456899999999999999 9999999986        46667


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA  303 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  303 (394)
                      .++.++|.++...|++++|+..|+++++        ..|....++.++|.++...|+.+++ ...+++++......
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            7899999999999999999999999876        3577788999999999887776665 66777777766554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.5e-16  Score=123.17  Aligned_cols=165  Identities=16%  Similarity=0.094  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH----------------HHHHHHHhhchhHHHH
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG----------------MAKVLGSIGRAKKAVE   79 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~   79 (394)
                      +..+...|..+...|++++|+..|++++..        .|....++..                +|.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            345678899999999999999999999987        3555566777                9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCH-
Q 016124           80 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA-  158 (394)
Q Consensus        80 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-  158 (394)
                      .|++++++        .|....++..+|.++...|++++|+..|++++++        +|....++.++|.+|...|+. 
T Consensus        76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence            99999987        5667889999999999999999999999999987        455567899999999776643 


Q ss_pred             -HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          159 -EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       159 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                       ..+...+.+++         .+++..  ..+..+|.++...|++++|+..|++++++
T Consensus       140 ~~~~~~~~~~~~---------~~~~~~--~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          140 KKKLETDYKKLS---------SPTKMQ--YARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHC------------CCCHHH--HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHh---------CCCchh--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             34455554442         123322  34577899999999999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=1e-15  Score=142.48  Aligned_cols=257  Identities=16%  Similarity=0.130  Sum_probs=153.2

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh
Q 016124           22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  101 (394)
Q Consensus        22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  101 (394)
                      +|.++...|.+++|...|+++-..         ..      .+...+...|++++|.++++++             ....
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~---------~~------A~~VLie~i~nldrAiE~Aerv-------------n~p~ 1106 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVN---------TS------AVQVLIEHIGNLDRAYEFAERC-------------NEPA 1106 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCH---------HH------HHHHHHHHHhhHHHHHHHHHhc-------------CCHH
Confidence            477777777777777777775211         01      1122233556666666655533             2256


Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  181 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  181 (394)
                      +|..+|.++...|++++|+..|.++          ++   ...+..++.++...|++++|++++..+.+..+.       
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence            7778888888888888888888665          12   235666888888888888888888887765321       


Q ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      +.    +...+|.+|.+.+++++ ++.|.   .         .+.. ..+..+|..+...|++++|..+|.++       
T Consensus      1167 ~~----Idt~LafaYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A         1167 SY----VETELIFALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred             cc----ccHHHHHHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence            00    11236777777777764 33221   1         1222 24456888888888888888887764       


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                               ..+..++.++...|++++|++.+++|...             .+|...+.++...|++. .|..+... +.
T Consensus      1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA~n~-------------~aWkev~~acve~~Ef~-LA~~cgl~-Ii 1277 (1630)
T 1xi4_A         1222 ---------SNFGRLASTLVHLGEYQAAVDGARKANST-------------RTWKEVCFACVDGKEFR-LAQMCGLH-IV 1277 (1630)
T ss_pred             ---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH-------------HHHHHHHHHHhhhhHHH-HHHHHHHh-hh
Confidence                     24567778888888888888877776321             23444455555555544 44443332 10


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124          342 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  386 (394)
                              .+|   +.+..++..|...|.+++|+.++++++.+.+
T Consensus      1278 --------v~~---deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A         1278 --------VHA---DELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred             --------cCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence                    122   2233555566666666666666666655443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=5.6e-16  Score=109.09  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=103.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      +..-+|+.+..+..+|..++..|+|++|+..|++++++        .|....++..+|.++...|++++|+..+++++++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            34467999999999999999999999999999999987        2445678999999999999999999999999987


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  151 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  151 (394)
                              +|....++..+|.++..+|++++|+..|++++++        +|....++..++.+
T Consensus        77 --------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 --------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC  124 (126)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             --------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence                    5667789999999999999999999999999997        34444556666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.67  E-value=3e-15  Score=105.34  Aligned_cols=103  Identities=14%  Similarity=0.043  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      +|..+..+..+|..++..|+|++|+..|++++++        .|....++.++|.++..+|++++|+..+++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            5888999999999999999999999999999987        5667889999999999999999999999999987    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                          +|....++.++|.++..+|++++|+..|++++++.
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence                45556789999999999999999999999999974

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.66  E-value=1.1e-13  Score=129.31  Aligned_cols=257  Identities=13%  Similarity=0.021  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..+|..+|..+...|++++|+..|.++             .....+..+|.++...|++++|+++|..+....+.     
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e----- 1166 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----- 1166 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-----
Confidence            345667777777777777777777654             12345666777777777777777777776654211     


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                       + .  +...+|.+|.+.+++++ ++.|.   .        +++.    ..+..+|..+...|++++|..+|.++     
T Consensus      1167 -~-~--Idt~LafaYAKl~rlee-le~fI---~--------~~n~----ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A         1167 -S-Y--VETELIFALAKTNRLAE-LEEFI---N--------GPNN----AHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred             -c-c--ccHHHHHHHHhhcCHHH-HHHHH---h--------CCCH----HHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence             0 0  11125555555555553 22221   0        0111    11234555555555555555555543     


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------------hhcCCCCCcchHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT-----------------KTVGPDDQSISFPMLHLGITL  280 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~~~~~~~~la~~~  280 (394)
                                 ..+..++.++.+.|++++|++.++++.....                 ...+-........+..++..|
T Consensus      1222 -----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A         1222 -----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY 1290 (1630)
T ss_pred             -----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence                       1244455555555555555555554422110                 000000111233455788889


Q ss_pred             HhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 016124          281 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRIQEREFGSESEEVMLTL  358 (394)
Q Consensus       281 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  358 (394)
                      ...|.+++|+.+++.++.+.        +.....+..++.++.+-.  +.. +++++|...+.+-+-+   ..-.....|
T Consensus      1291 e~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklm-Ehlk~f~~rini~k~~---r~~e~~~lW 1358 (1630)
T 1xi4_A         1291 QDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMR-EHLELFWSRVNIPKVL---RAAEQAHLW 1358 (1630)
T ss_pred             HHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHH-HHHHHHHHhcccchHh---HHHHHHHHH
Confidence            99999999999998887643        333445666777776643  222 4444444433221100   011456678


Q ss_pred             HHHHHHHHHhcCchhhhhhHHH
Q 016124          359 KKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~  380 (394)
                      ..+..+|.+-|+++.|....-+
T Consensus      1359 ~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1359 AELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             HHHHHHHHhcccHHHHHHHHHh
Confidence            8899999999999999854433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.66  E-value=9.7e-17  Score=133.76  Aligned_cols=269  Identities=11%  Similarity=-0.006  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+|..+|..+...|++++|+..|.++-             ....+..++..+...|++++|+.+++.+++..        
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------   91 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------   91 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------
Confidence            478899999999999999999997641             12256777888888999999999888877631        


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      ++ +.+...++.+|.+.|++.++.++++.             |.. .++..+|..+...|+|++|..+|.++        
T Consensus        92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           92 RE-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred             cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            11 35567788999999999998877742             222 38899999999999999999999975        


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                                ..+..+|.++..+|++++|++.++++.             ...++...+.++...|+++.|..+....  
T Consensus       149 ----------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--  203 (449)
T 1b89_A          149 ----------SNFGRLASTLVHLGEYQAAVDGARKAN-------------STRTWKEVCFACVDGKEFRLAQMCGLHI--  203 (449)
T ss_dssp             ----------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------CHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred             ----------hhHHHHHHHHHHhccHHHHHHHHHHcC-------------CchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence                      134779999999999999999999871             2356778888999999999996554431  


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  336 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~  336 (394)
                             ..+|+.   ...+..+|...|++++|+.++++++.+.        +.....+..||.++.+-. ++ +-.   
T Consensus       204 -------~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le--------~ah~~~ftel~il~~ky~-p~-k~~---  260 (449)
T 1b89_A          204 -------VVHADE---LEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFK-PQ-KMR---  260 (449)
T ss_dssp             -------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST--------TCCHHHHHHHHHHHHTTC-HH-HHH---
T ss_pred             -------HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc--------HHHHHHHHHHHHHHHhcC-HH-HHH---
Confidence                   123333   3468889999999999999999997632        333456777888887653 33 222   


Q ss_pred             HHHHHHHHhhcCCCCH------HHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124          337 KRVLRIQEREFGSESE------EVMLTLKKVVSYLDKLGRKEEKFPLKKR  380 (394)
Q Consensus       337 ~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~  380 (394)
                       ..++.+.+.  -+.|      .....|..+..+|...++++.|....-+
T Consensus       261 -ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          261 -EHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             -HHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -HHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence             222233221  1222      2345678889999999999998775443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=7.4e-15  Score=115.79  Aligned_cols=209  Identities=12%  Similarity=-0.017  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-------HHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      ..++..|..+ ..+++..|...|.+++.+        +|....++..+       +.++...+++.+++..+++++.+..
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p   78 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM   78 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            3356666666 589999999999999987        46778889988       8999999999999999999887643


Q ss_pred             HhcCCCCc-------------chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124           90 LNRGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus        90 ~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  156 (394)
                      ........             ....+...++.++...|+|++|...|...+.        ..|... ..+.+|.++...+
T Consensus        79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~  149 (282)
T 4f3v_A           79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAE  149 (282)
T ss_dssp             GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTT
T ss_pred             hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcC
Confidence            33211110             1123344578899999999999999987764        245555 8899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLA  235 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la  235 (394)
                      ++++|+.+++.+...        +++.....+++++|.++..+|++++|+.+|++++.      ++..|. ...+.+++|
T Consensus       150 r~~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          150 RWTDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA  215 (282)
T ss_dssp             CHHHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence            999999999865431        23333345789999999999999999999999863      222254 677899999


Q ss_pred             HHHHHcccHHHHHHHHHHHHHH
Q 016124          236 ASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       236 ~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      .++..+|+.++|...|++++..
T Consensus       216 laL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          216 MARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999999999999999884

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.66  E-value=3.6e-15  Score=112.14  Aligned_cols=165  Identities=19%  Similarity=0.085  Sum_probs=131.8

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ...+..+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..       .
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~   70 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y   70 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence            456778999999999999999999999986        4555678999999999999999999999998763       2


Q ss_pred             CchHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  258 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  258 (394)
                      | .+...   ..++.+ +...++..+|+..+++++..        +|....++..+|.++...|++++|+..|++++.. 
T Consensus        71 p-~~~~~---~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-  137 (176)
T 2r5s_A           71 Q-DNSYK---SLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-  137 (176)
T ss_dssp             C-CHHHH---HHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             C-ChHHH---HHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence            2 22222   223333 22334455688999998875        4666788999999999999999999999999873 


Q ss_pred             HhhcCCCCCc--chHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          259 TKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       259 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                             +|.  ...++..+|.++...|+.++|+..|++++..
T Consensus       138 -------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 -------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                   232  3558899999999999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=1.8e-14  Score=111.61  Aligned_cols=175  Identities=16%  Similarity=0.144  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Q 016124           75 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  154 (394)
Q Consensus        75 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  154 (394)
                      .+|+.+|+++.+.          ..+.+++.+|.+|...+++++|+.+|+++.+.       ++   ..++.++|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~---~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GD---GDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHc
Confidence            4577788887753          34678899999999999999999999999763       22   4578899999988


Q ss_pred             CC----CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCc-
Q 016124          155 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHP-  225 (394)
Q Consensus       155 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~-  225 (394)
                       +    ++++|+.+|+++.+.         .+   ..++.++|.+|..    .+++++|+.+|+++.+.        .+ 
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~  121 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SES  121 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTS
T ss_pred             -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCC
Confidence             7    999999999999652         11   3456889999988    88999999999998763        22 


Q ss_pred             -cHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh-c-----ChHHHHHHHH
Q 016124          226 -SFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVL  294 (394)
Q Consensus       226 -~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~  294 (394)
                       ....++.+||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+
T Consensus       122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~  192 (212)
T 3rjv_A          122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN  192 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence             357789999999999    88999999999999872         23345789999999864 3     8999999999


Q ss_pred             HHHHH
Q 016124          295 EALYI  299 (394)
Q Consensus       295 ~a~~~  299 (394)
                      ++.+.
T Consensus       193 ~A~~~  197 (212)
T 3rjv_A          193 VSCLE  197 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=1.6e-14  Score=111.88  Aligned_cols=177  Identities=14%  Similarity=0.022  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH
Q 016124           33 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  112 (394)
Q Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (394)
                      .+|+.+|+++.+.          ..+.+++.+|.++...+++++|+.+|+++.+.          ..+.+++.+|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence            3577888888763          23467889999999999999999999999763          235788999999998


Q ss_pred             hC----cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          113 EG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       113 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                       +    ++++|+.+|+++.+.       .   ...++.++|.+|..    .+++++|+.+|+++.+.       ++. ..
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~-~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SES-DA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTS-HH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCC-cc
Confidence             7    999999999999642       2   34578899999988    89999999999999863       221 12


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc-c-----cHHHHHHHHHHH
Q 016124          185 MENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-K-----NFVEAERLLRIC  254 (394)
Q Consensus       185 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  254 (394)
                      ...++.++|.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            34567899999999    88999999999999763         12234788999999865 3     899999999999


Q ss_pred             HHH
Q 016124          255 LDI  257 (394)
Q Consensus       255 ~~~  257 (394)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            883

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.65  E-value=8.9e-15  Score=119.05  Aligned_cols=169  Identities=15%  Similarity=0.031  Sum_probs=144.0

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      |.....+..+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            456678889999999999999999999999987        3455578999999999999999999999998763     


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                        .|+..   ......+..+...++.++|+..+++++..        +|....++.++|.++...|++++|+..|++++.
T Consensus       181 --~p~~~---~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 --DQDTR---YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             --GCSHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcchH---HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence              23322   23456677788889999999999999885        567778999999999999999999999999998


Q ss_pred             HHHhhcCCCCCcc--hHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          257 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       257 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      .        +|..  ..++..++.++...|+.++|...|++++..
T Consensus       248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4        3444  678899999999999999999999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.63  E-value=1.7e-15  Score=113.97  Aligned_cols=167  Identities=18%  Similarity=0.079  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..        
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------   69 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE--------   69 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------
Confidence            3456789999999999999999999999863        555678999999999999999999999998764        


Q ss_pred             CcchHhhhHhHHHHH-HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           96 SADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      .| .......++.+. ...++..+|+..+++++..        .|....++..+|.++...|++++|+..++++++..  
T Consensus        70 ~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--  138 (176)
T 2r5s_A           70 YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--  138 (176)
T ss_dssp             GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--
Confidence            22 223333334332 2323344578999999876        45556788999999999999999999999998753  


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                           |++.. ..++.+++.++...|+.++|+..|++++..
T Consensus       139 -----p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          139 -----LGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -----TTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -----cccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                 22111 234578999999999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.63  E-value=2.2e-14  Score=103.81  Aligned_cols=109  Identities=10%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124            5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus         5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      ++....-+|....+++.+|..++..|++++|+..|++++.+        +|....++..+|.++...|++++|+..|+++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            44555678999999999999999999999999999999987        2445668999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      +.+        .|..+.+++++|.++..+|++++|+..|++++.+
T Consensus        97 l~l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           97 FAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHH--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            998        4666788999999999999999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.63  E-value=3.2e-15  Score=108.21  Aligned_cols=103  Identities=9%  Similarity=0.062  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      +|....+++.+|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5778889999999999999999999999999987        5677889999999999999999999999999997    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                          .|....++.++|.+|...|++++|+..|++++++.
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                34444678999999999999999999999999974

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.62  E-value=4.6e-13  Score=108.28  Aligned_cols=225  Identities=9%  Similarity=-0.074  Sum_probs=182.1

Q ss_pred             HHhhch-hHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC--cHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124           69 GSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAM  145 (394)
Q Consensus        69 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  145 (394)
                      ...|.+ ++|+..+.+++.+        +|....+++..+.++...|  ++++++..+.+++..        +|....++
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW  106 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIW  106 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHH
Confidence            344444 6899999999988        6778889999999999999  999999999999986        45555677


Q ss_pred             HHHHHHH----HHC---CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHH
Q 016124          146 CSLAHAK----CAN---GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--EGRELLEECLLIT  216 (394)
Q Consensus       146 ~~la~~~----~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~  216 (394)
                      +..+.++    ...   +++++++.++.++++...+.          ..++...+.+....|+++  +++++++++++. 
T Consensus       107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn----------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-  175 (306)
T 3dra_A          107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN----------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-  175 (306)
T ss_dssp             HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-
Confidence            7777777    666   89999999999999864332          456788899999999998  999999999875 


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          217 EKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       217 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                             +|....++...+.+....++      ++++++++.+++.+        +|....++..++.++...|+..+++
T Consensus       176 -------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          176 -------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             -------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred             -------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHH
Confidence                   56777889999999998887      89999999999884        6788889999999999999865544


Q ss_pred             -HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          291 -KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       291 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                       .++.+++...     ...+....++..++.++.+.|+.+ +|+++|+.+.+
T Consensus       241 ~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~-~A~~~~~~l~~  286 (306)
T 3dra_A          241 EEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYN-ESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Confidence             4555554421     113445567899999999999998 99999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=3.3e-14  Score=100.25  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=96.0

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      ++.+.++.++|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.+.. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            345678889999999999999999999999987        45556789999999999999999999999999998763 


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .......+.++.++|.++...|++++|+.+|++++..
T Consensus        76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              4556777889999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.62  E-value=2.9e-14  Score=116.03  Aligned_cols=171  Identities=18%  Similarity=0.145  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      |.....+..+|..+...|++++|+..|+++++..       |+.   ..++..+|.++...|++++|+..+++++..   
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-------NQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQ---  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------Ccc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence            3445677899999999999999999999999864       333   346689999999999999999999988653   


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                           .|.........+..+...++.++|+..+++++..        +|....++.++|.++...|++++|+..|+++++
T Consensus       181 -----~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 -----DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             -----GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence                 3445556667777788899999999999999884        577788999999999999999999999999998


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          299 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                      ..     |++ ....++..++.++...|+.+ +|...|++++..
T Consensus       248 ~~-----p~~-~~~~a~~~l~~~~~~~g~~~-~a~~~~r~al~~  284 (287)
T 3qou_A          248 XD-----LTA-ADGQTRXTFQEILAALGTGD-ALASXYRRQLYA  284 (287)
T ss_dssp             HC-----TTG-GGGHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             cc-----ccc-ccchHHHHHHHHHHHcCCCC-cHHHHHHHHHHH
Confidence            54     222 22567899999999999999 999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.62  E-value=4.9e-13  Score=108.11  Aligned_cols=226  Identities=10%  Similarity=-0.012  Sum_probs=181.6

Q ss_pred             HHhhhch-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           26 YSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        26 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      ....|.+ ++|+..+.+++.+        .|....+++..+.++...|  ++++++..+.+++..        +|....+
T Consensus        42 ~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~a  105 (306)
T 3dra_A           42 LMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQI  105 (306)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHH
Confidence            3444554 6899999999987        3555678889999999999  999999999999986        5667788


Q ss_pred             hHhHHHHH----HHh---CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Q 016124          103 LFSLGSLF----IKE---GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--EAVELYKKALRVIK  173 (394)
Q Consensus       103 ~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~  173 (394)
                      ++..+.++    ...   +++++++.++.++++.        +|....++...+.+....|.++  +++.++.++++...
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            88888888    666   7899999999999986        5666678999999999999998  99999999998643


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  247 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  247 (394)
                      ..          ..++...+.+....|+      ++++++++.+++..        +|....+++.++.++...|+..++
T Consensus       178 ~N----------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~  239 (306)
T 3dra_A          178 KN----------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQ  239 (306)
T ss_dssp             TC----------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred             CC----------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHH
Confidence            21          4566788888888887      88999999998875        577778899999999999986553


Q ss_pred             H-HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          248 E-RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       248 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      . .++.+++.+.     ...+....++..++.++...|+.++|+++++.+.+
T Consensus       240 ~~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          240 LEEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             GHHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            3 4444444321     12356677899999999999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.61  E-value=1.5e-15  Score=126.64  Aligned_cols=261  Identities=12%  Similarity=0.043  Sum_probs=111.7

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhH
Q 016124           25 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  104 (394)
Q Consensus        25 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  104 (394)
                      .....|+.++|..++++.          ++|   .++..+|..+...|++++|++.|.++-             ....+.
T Consensus        12 ll~~~~~ld~A~~fae~~----------~~~---~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~   65 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERC----------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYM   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhC----------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHH
Confidence            345678888898888876          122   378899999999999999999997641             123667


Q ss_pred             hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       105 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      .++..+...|++++|+.+++.+++..        +. ..+...++.+|.+.|+++++..+++.            |+.  
T Consensus        66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------pn~--  122 (449)
T 1b89_A           66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING------------PNN--  122 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTTC------------C----
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC------------CcH--
Confidence            78888999999999999999887641        11 34567789999999999998877642            221  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                        ..+..+|..+...|++++|..+|.++                ..+..+|.++...|++++|++.++++.         
T Consensus       123 --~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~---------  175 (449)
T 1b89_A          123 --AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN---------  175 (449)
T ss_dssp             ----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT---------
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC---------
Confidence              26789999999999999999999865                246789999999999999999999871         


Q ss_pred             CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~  344 (394)
                          ...+|..+..++...|+++.|..+....         ..+|+.   +..+..+|.+.|.++ +|+.++++++.+  
T Consensus       176 ----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l~~lv~~Yek~G~~e-Eai~lLe~aL~l--  236 (449)
T 1b89_A          176 ----STRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---LEELINYYQDRGYFE-ELITMLEAALGL--  236 (449)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---HHHHHHHHHHTTCHH-HHHHHHHHHTTS--
T ss_pred             ----CchhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---HHHHHHHHHHCCCHH-HHHHHHHHHhCC--
Confidence                2467788889999999999996655431         134543   446888999999999 999999999853  


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHH--hcCchhhhhhHHHHHHHHH
Q 016124          345 REFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       345 ~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~  386 (394)
                         .+.|   ...+..||.+|.+  .++..+.++.|...+.+.+
T Consensus       237 ---e~ah---~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          237 ---ERAH---MGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             ---TTCC---HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             ---cHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence               1223   4556666666654  5677777777777666655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.61  E-value=4.2e-14  Score=99.70  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      ++.+.++..+|..++..|+|++|+.+|++++++        +|..+.++.++|.+|..+|++++|+..+++++++.+.. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            466778899999999999999999999999987        56678899999999999999999999999999987664 


Q ss_pred             CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ....+..+.++.++|.++...|++++|+.+|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2345567789999999999999999999999999985

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.61  E-value=1.4e-14  Score=130.12  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=118.3

Q ss_pred             hhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124           71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  150 (394)
Q Consensus        71 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  150 (394)
                      .|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.        .|....++.++|.
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47899999999999876        4566788999999999999999999999999975        3445678999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH
Q 016124          151 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  230 (394)
Q Consensus       151 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  230 (394)
                      ++...|++++|+.++++++++..       +.   ..++.++|.++...|++++|+..++++++.        .|....+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~p-------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAAP-------EH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC-------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            99999999999999999998642       22   456789999999999999999999999986        3555678


Q ss_pred             HHHHHHHHHHc---ccHHHHHHHHHHHHHH
Q 016124          231 LLNLAASYSRS---KNFVEAERLLRICLDI  257 (394)
Q Consensus       231 ~~~la~~~~~~---g~~~~A~~~~~~a~~~  257 (394)
                      +.++|.++...   |++++|...++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            89999999999   9999999999999885

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.7e-14  Score=113.72  Aligned_cols=208  Identities=12%  Similarity=0.022  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhH-------HHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL-------GSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      .++..|.-+ ..+++..|...|.+++.+        +|..+.++..+       +.++...++..+++..+++++.+...
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~   79 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS   79 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGG
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            344555555 589999999999999997        68888999999       89999999999999999998876443


Q ss_pred             hhCCCch-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc
Q 016124          133 VYGENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV  199 (394)
Q Consensus       133 ~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  199 (394)
                      .++....             ........++.++...|+|++|.+.|..++.       .+++.   . ..+.+|.++...
T Consensus        80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-------~~p~~---~-~~~~~a~l~~~~  148 (282)
T 4f3v_A           80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-------AGSEH---L-VAWMKAVVYGAA  148 (282)
T ss_dssp             GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-------TTCHH---H-HHHHHHHHHHHT
T ss_pred             hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCch---H-HHHHHHHHHHHc
Confidence            3221111             1234556688999999999999999987654       12222   2 568899999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc-chHHHHHHH
Q 016124          200 GRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLG  277 (394)
Q Consensus       200 g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la  277 (394)
                      +++++|+..++++...       .++. ...+++.+|.++...|++++|+.+|+++..      ++..|. ...+.+.+|
T Consensus       149 ~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA  215 (282)
T ss_dssp             TCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence            9999999999865432       1232 245889999999999999999999999874      222254 667889999


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHH
Q 016124          278 ITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      .++..+|+.++|...|++++...
T Consensus       216 laL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          216 MARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999998854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.59  E-value=2.4e-14  Score=128.56  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=117.7

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124           29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  108 (394)
Q Consensus        29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
                      .|++++|+..++++++..        |....++..+|.++...|++++|+..++++++.        .|....++..+|.
T Consensus         2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            478999999999998763        344568999999999999999999999999986        4566789999999


Q ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124          109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  188 (394)
Q Consensus       109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  188 (394)
                      ++...|++++|+.+++++++.        .|....++.++|.++...|++++|+..++++++...       +.   ..+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~---~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-------EE---PYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CC---HHH
Confidence            999999999999999999987        344466889999999999999999999999998642       22   345


Q ss_pred             HHHHHHHHHHc---CChHHHHHHHHHHHHH
Q 016124          189 RIDLAELLHIV---GRGQEGRELLEECLLI  215 (394)
Q Consensus       189 ~~~la~~~~~~---g~~~~A~~~~~~a~~~  215 (394)
                      +.++|.++...   |++++|...++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            68899999999   9999999999999876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.58  E-value=1.8e-14  Score=119.97  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=131.1

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC-------CCcchH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-------ESADLV  100 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  100 (394)
                      ..+++++|+..+++++..        .|..+.++..+|.++...|++++|+..|++++.+.......       ..+...
T Consensus       125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  196 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL  196 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence            567788888888877764        36778889999999999999999999999999983221000       001226


Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .++.++|.++...|++++|+.+|++++.+        .|....++.++|.++...|++++|+..|++++++.       |
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P  261 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------P  261 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------S
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------C
Confidence            78999999999999999999999999987        34556789999999999999999999999999974       2


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLIT  216 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~  216 (394)
                      +.   ..++.+++.++...|++++| ...|.+++...
T Consensus       262 ~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          262 NN---KAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32   34568899999999999998 45677666544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.58  E-value=2e-14  Score=119.59  Aligned_cols=163  Identities=17%  Similarity=0.101  Sum_probs=132.1

Q ss_pred             HhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC-------CchHHH
Q 016124           70 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG  142 (394)
Q Consensus        70 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  142 (394)
                      ..+++++|+..+++++..        .|..+.++..+|.++...|++++|+..|++++.+.......       ..+...
T Consensus       125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  196 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL  196 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence            457788888888877765        35667889999999999999999999999999884321000       012236


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      .++.++|.++...|++++|+..+++++++..       +.   ..++.++|.++...|++++|+..|++++.+       
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------  259 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-------NN---EKGLSRRGEAHLAVNDFELARADFQKVLQL-------  259 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------Cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence            7899999999999999999999999999742       22   456789999999999999999999999986       


Q ss_pred             CCccHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHH
Q 016124          223 EHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIM  258 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~  258 (394)
                       .|....++..++.++...|++++| ...|++++...
T Consensus       260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             456667899999999999999999 45677766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=3e-13  Score=96.61  Aligned_cols=131  Identities=21%  Similarity=0.410  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+++.+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            457889999999999999999999998752        223456788999999999999999999999876        3


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            444667889999999999999999999999876        2233457788999999999999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.54  E-value=7.6e-13  Score=94.50  Aligned_cols=131  Identities=21%  Similarity=0.348  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            35778899999999999999999999876        3445678889999999999999999999999876        2


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      |....++..+|.++...|++++|+..+++++....       ..   ..++..+|.++...|++++|..++++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            33345678899999999999999999999998632       22   345678999999999999999999998865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=4.8e-13  Score=96.97  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=96.6

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124            5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus         5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      ++.....+|....+++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|+++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34445567888999999999999999999999999999986        2344567889999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      +.+        .|....+++.+|.++...|++++|+..|++++.+.
T Consensus        82 l~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           82 AVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            987        45566789999999999999999999999999884

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.52  E-value=1.8e-13  Score=99.25  Aligned_cols=104  Identities=16%  Similarity=-0.003  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      +|....+++.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677888999999999999999999999999987        5666788999999999999999999999999987    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                          .|....++.++|.++...|++++|+..|++++++..
T Consensus        85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                334446789999999999999999999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=6.2e-13  Score=98.80  Aligned_cols=140  Identities=12%  Similarity=0.050  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      ...+..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..     
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----   76 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            3467788999999999999999999999999862        333567889999999999999999999999987     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                         .|....++..+|.++...|++++|+.++++++..     .+.++. ......++..+...|++++|+..+.++..+.
T Consensus        77 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           77 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence               3556778999999999999999999999999987     223332 2233556666888999999999999988877


Q ss_pred             Hh
Q 016124          173 KD  174 (394)
Q Consensus       173 ~~  174 (394)
                      ..
T Consensus       148 ~~  149 (166)
T 1a17_A          148 DS  149 (166)
T ss_dssp             HH
T ss_pred             cc
Confidence            55

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=6e-13  Score=93.87  Aligned_cols=123  Identities=12%  Similarity=0.033  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      |..+..+..+|..++..|++++|+..|++++.+.        |....++..+|.++...|++++|+..+++++.+     
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   67 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----   67 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            4567789999999999999999999999999872        334578999999999999999999999999987     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  153 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  153 (394)
                         .|....++..+|.++...|++++|+..|++++.+.....  +.|....+...++.+..
T Consensus        68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence               456678999999999999999999999999999864432  22444455555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=1.3e-12  Score=97.00  Aligned_cols=140  Identities=12%  Similarity=0.042  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+..+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            55677899999999999999999999999986        4455788999999999999999999999999987      


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        .|....++..+|.++...|++++|+.++++++.+..       ..+. ......++..+...|++++|+..+.++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-------HDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              234456789999999999999999999999998642       2222 223355666688899999999999998887


Q ss_pred             HHHh
Q 016124          216 TEKY  219 (394)
Q Consensus       216 ~~~~  219 (394)
                      ....
T Consensus       147 ~~~~  150 (166)
T 1a17_A          147 VDSL  150 (166)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            6543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.4e-12  Score=90.72  Aligned_cols=122  Identities=12%  Similarity=-0.058  Sum_probs=100.1

Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ..+..+..+|..+...|++++|+..|++++..        .|....++.++|.++...|++++|+..+++++++..    
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----   69 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP----   69 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----
Confidence            34567889999999999999999999999987        344457899999999999999999999999999742    


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                         +.   ..++.++|.++...|++++|+..+++++.+.....  ..|....+...++.+..
T Consensus        70 ---~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           70 ---NF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             ---TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred             ---Cc---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence               22   45678999999999999999999999999865543  34555666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.50  E-value=3.3e-13  Score=104.90  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .+..++.+|..+...|++++|+..|++++.       +    ...++..+|.++...|++++|+..+++++..       
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            445578999999999999999999998841       1    2457899999999999999999999999987       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYK  166 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  166 (394)
                       .|....++..+|.++...|++++|+..|++++.......        ....+....++.++|.++...|++++|+..++
T Consensus        67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence             455678899999999999999999999999998643210        00234566889999999999999999999999


Q ss_pred             HHHHHH
Q 016124          167 KALRVI  172 (394)
Q Consensus       167 ~a~~~~  172 (394)
                      +++++.
T Consensus       146 ~al~~~  151 (213)
T 1hh8_A          146 LATSMK  151 (213)
T ss_dssp             HHHTTC
T ss_pred             HHHHcC
Confidence            999853

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=1.8e-12  Score=92.40  Aligned_cols=118  Identities=17%  Similarity=0.055  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC----CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      .+..+...|..++..|+|++|+..|++++++.......    ..|....++.++|.++..+|++++|+..+.++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            45667889999999999999999999999985431110    01123449999999999999999999999999998666


Q ss_pred             hhCCCchHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124          133 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus       133 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .. +-+|....++    +++|.++..+|++++|+..|++++++....
T Consensus        90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            53 4456777788    999999999999999999999999997654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=6e-13  Score=103.39  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ...++.+|..+...|++++|+..|++++.          + ...++..+|.++...|++++|+.+|++++..        
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            34577889999999999999999998731          1 3578999999999999999999999999987        


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc------CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                      .|....++.++|.++...|++++|+..++++++.......      .....+....++.++|.++...|++++|+..+++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3444578999999999999999999999999987543200      0002223356779999999999999999999999


Q ss_pred             HHHH
Q 016124          212 CLLI  215 (394)
Q Consensus       212 a~~~  215 (394)
                      ++.+
T Consensus       147 al~~  150 (213)
T 1hh8_A          147 ATSM  150 (213)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=2.2e-12  Score=91.94  Aligned_cols=117  Identities=10%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG----KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      .+..+...|..++..|+|++|+..|++++++.+....    ...|....++.++|.++..+|++++|+..++++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4566789999999999999999999999998644100    112345669999999999999999999999999998655


Q ss_pred             hcCCCCcchHhhh----HhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPL----FSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        91 ~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      .. +-.|+...+|    +++|.++..+|++++|+..|++++++...
T Consensus        90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            43 3467788888    99999999999999999999999998654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.48  E-value=1.9e-13  Score=104.83  Aligned_cols=163  Identities=12%  Similarity=0.026  Sum_probs=116.8

Q ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC----
Q 016124          104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS----  179 (394)
Q Consensus       104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----  179 (394)
                      ...+......|+++++.+.+......        .+..+..+..+|..+...|++++|+..|.+++.+........    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~   79 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL   79 (198)
T ss_dssp             --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence            34566667778888887777655432        345667889999999999999999999999998754320000    


Q ss_pred             --CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124          180 --LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       180 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                        ........++.++|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|+..|++++.+
T Consensus        80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence              001112467889999999999999999999999986        3556778999999999999999999999999985


Q ss_pred             HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                              .|....++..++.++...++..++.
T Consensus       152 --------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          152 --------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             --------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             --------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                    4556778889999999888887776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=1.6e-12  Score=96.11  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=96.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC---Cc-------hHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIY   81 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~   81 (394)
                      ....+..+...|..++..|+|++|+..|.+++.+......   +.       .|....++.++|.++...|++++|+..+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3456788999999999999999999999999998655321   11       4566788999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           82 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ++++.+        +|....+++.+|.++...|++++|+..|++++.+
T Consensus        87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            999997        5677889999999999999999999999999988

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.47  E-value=2.1e-12  Score=93.08  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124            5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   84 (394)
Q Consensus         5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   84 (394)
                      ++.....+|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|+++
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44555677888899999999999999999999999999986        2344567889999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124           85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  131 (394)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  131 (394)
                      +.+        .|....++..+|.++...|++++|+..|++++.+..
T Consensus        79 l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           79 ALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            987        455667889999999999999999999999998854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.47  E-value=1.7e-13  Score=111.03  Aligned_cols=194  Identities=12%  Similarity=-0.003  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      +..+..+|..+...|++++|+..|++++..        .|....++.++|.++...|++++|+..+++++.+        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            456788999999999999999999999987        4566788999999999999999999999999875        


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      +|....++..+|.++...|++++|+..+++++++......  .-.....     ....      ..++..+...     .
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~-----~~~~------~~~~~~~~~~-----~  129 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIP-----SALR------IAKKKRWNSI-----E  129 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHH-----HHHH------HHHHHHHHHH-----H
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHH-----HHHH------HHHHHHHHHH-----H
Confidence            4555678999999999999999999999999998764310  0001111     0101      1111111111     1


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh-cChHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA  296 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  296 (394)
                      ....+..+..   ...++.+.  .|++++|++.++++++.        .|........++.++... +.+++|...|.++
T Consensus       130 ~~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          130 ERRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HTCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111223333   33445443  68999999988887762        344445555666666665 7788888888877


Q ss_pred             HH
Q 016124          297 LY  298 (394)
Q Consensus       297 ~~  298 (394)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            55

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.46  E-value=2.7e-13  Score=104.03  Aligned_cols=159  Identities=17%  Similarity=0.096  Sum_probs=112.6

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc-
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD-   98 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-   98 (394)
                      ...+......|+++++...+......        .+..+..+..+|..+...|++++|+..|++++.+.....  +... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~   77 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--EWDDQ   77 (198)
T ss_dssp             --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT--TCCCH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccchh
Confidence            34566666778888887777654432        345677889999999999999999999999998632210  0000 


Q ss_pred             ---------hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           99 ---------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        99 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                               ...++.++|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|+..|++++
T Consensus        78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                     1378899999999999999999999999987        34445788999999999999999999999999


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  206 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  206 (394)
                      ++..       +.   ..++..++.++...++..++.
T Consensus       150 ~~~p-------~~---~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          150 SLNP-------NN---LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHST-------TC---HHHHHHHHHHHHHHHHHHC--
T ss_pred             HHCC-------Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence            8742       22   344577888888888777766

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.46  E-value=6.6e-12  Score=90.46  Aligned_cols=105  Identities=14%  Similarity=0.018  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      +|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677788999999999999999999999999986        5666788999999999999999999999999987    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                          .|....++.++|.++...|++++|+..|++++++...
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                2334457889999999999999999999999998653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-12  Score=93.50  Aligned_cols=126  Identities=13%  Similarity=0.080  Sum_probs=106.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      .....|.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A            8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            345667788899999999999999999999999998752        333567899999999999999999999999986


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  157 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  157 (394)
                              .|....++..+|.++...|++++|+.++++++..        .|....++..++.++...|+
T Consensus        80 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 --------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             --------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                    3456778999999999999999999999999986        34445677888888877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.46  E-value=1.8e-12  Score=91.97  Aligned_cols=126  Identities=18%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124            9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   88 (394)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   88 (394)
                      ...+|.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.. 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-   75 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-   75 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-
Confidence            34577888899999999999999999999999999862        233567889999999999999999999999986 


Q ss_pred             HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCH
Q 016124           89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  158 (394)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  158 (394)
                             .|....++..+|.++...|++++|..++++++..        .|....++..++.++...|++
T Consensus        76 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                   3445678999999999999999999999999987        233345678899998888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=1.4e-13  Score=111.55  Aligned_cols=195  Identities=12%  Similarity=0.028  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .+..+..+|..++..|++++|+..|++++...        |....++..+|.++...|++++|+..+++++.+       
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            45678899999999999999999999999862        334567899999999999999999999999875       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                       .|....+++.+|.++...|++++|+..|++++.+.......-.. .......          ..++........    .
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~----~  131 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-DIPSALR----------IAKKKRWNSIEE----R  131 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS-HHHHHHH----------HHHHHHHHHHHH----T
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH-HHHHHHH----------HHHHHHHHHHHH----H
Confidence             56677899999999999999999999999999986542100001 1111111          111111111111    1


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc-ccHHHHHHHHHH
Q 016124          175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRI  253 (394)
Q Consensus       175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  253 (394)
                         ..+..+.+.   ..++.++  .|++++|++.++++++.        .|........++.++... +.+++|...|.+
T Consensus       132 ---~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~  195 (281)
T 2c2l_A          132 ---RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQ  195 (281)
T ss_dssp             ---CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence               122223322   2234433  68899999988887763        345555556666666665 778889998887


Q ss_pred             HHH
Q 016124          254 CLD  256 (394)
Q Consensus       254 a~~  256 (394)
                      +.+
T Consensus       196 a~~  198 (281)
T 2c2l_A          196 VDE  198 (281)
T ss_dssp             SSC
T ss_pred             hhc
Confidence            765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=6.7e-12  Score=88.96  Aligned_cols=124  Identities=19%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           53 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        53 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      ..+.....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+.++.+++..   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            35677888999999999999999999999999986        3445778999999999999999999999999986   


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCCh
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG  202 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  202 (394)
                           .|....++..+|.++...|++++|+.++++++....       +.   ..++..++.++...|++
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------~~---~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-------DN---ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TC---HHHHHHHHHHHHHHTTC
T ss_pred             -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-------cc---hHHHHHHHHHHHHHhcC
Confidence                 233356789999999999999999999999998632       22   23557889999888875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.45  E-value=4.1e-10  Score=91.56  Aligned_cols=224  Identities=7%  Similarity=-0.042  Sum_probs=163.9

Q ss_pred             HHHhhchh-HHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCc----------HHHHHHHHHHHHHHHHHhhCC
Q 016124           68 LGSIGRAK-KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        68 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  136 (394)
                      ....|.++ +|+..+.+++.+        +|....+++..+.++...+.          +++++.++..++..       
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------  103 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------  103 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence            34567776 789999988876        67778888888888887766          56777777777764       


Q ss_pred             CchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGN--AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECL  213 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~  213 (394)
                       +|....++...+.++...|+  +++++.++.++++...+.          ..++...+.+....|. ++++++++.+++
T Consensus       104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN----------y~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A          104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN----------FHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence             56666789999999999984  899999999999864332          4566888888899998 589999999998


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 016124          214 LITEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  279 (394)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  279 (394)
                      ..        +|....++...+.++...              +.++++++++.+++.+        +|....++..+..+
T Consensus       173 ~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          173 TR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWL  236 (331)
T ss_dssp             HH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHH
T ss_pred             HH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            75        677778899999888877              6688999999999884        56677777766555


Q ss_pred             HHhh-----------cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH---HhCCCchHHHHHHHHHHHH
Q 016124          280 LYHL-----------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT---RLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       280 ~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~A~~~~~~al~~  342 (394)
                      +...           +.++++++.+.+++++.     |+.   ..++..++.+..   ..|..+ +...++.+..++
T Consensus       237 l~~~~~~~~~~~~~~~~l~~el~~~~elle~~-----pd~---~w~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~  304 (331)
T 3dss_A          237 LGAGSGRCELSVEKSTVLQSELESCKELQELE-----PEN---KWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAV  304 (331)
T ss_dssp             HHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCTTTTHH-HHHHHHHHHHHH
T ss_pred             HHhccCccccchHHHHHHHHHHHHHHHHHhhC-----ccc---chHHHHHHHHHHhhcccccHH-HHHHHHHHHHHh
Confidence            5554           34677777777777654     333   233333333222   234444 677777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=1.4e-13  Score=119.95  Aligned_cols=180  Identities=11%  Similarity=-0.009  Sum_probs=129.7

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      +..+..+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+|++++|+..+++++++.    
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----   70 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----   70 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence            345667888999999999999999999999987        45556789999999999999999999999999853    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH--HHHcccHHHHHHHHH--
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR--  252 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--  252 (394)
                         ++.   ..++.++|.+|..+|++++|+..+++++++        +|....++..++.+  +...|++++|++.++  
T Consensus        71 ---p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           71 ---KKY---IKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             ---TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             ---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence               222   456789999999999999999999999986        23333456677777  888999999999998  


Q ss_pred             ---------HHHHHHHhhcCCCCCc---chHHHHHHHHHHHhhcChH--HHHHHHHHHHHHHHH
Q 016124          253 ---------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  302 (394)
Q Consensus       253 ---------~a~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~  302 (394)
                               +++.+.....++..+.   ....+..+...+...+...  .+..++.++.++...
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                     5554433333333332   2333344445555555544  445577777777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.43  E-value=2e-12  Score=95.80  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=94.4

Q ss_pred             CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124           10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   89 (394)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   89 (394)
                      ..++..+..+..+|.+++..|++++|+.+|++++.+.        |....++..+|.++...|++++|+..|++++.+  
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--   74 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--   74 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence            3566788899999999999999999999999999873        334678999999999999999999999999987  


Q ss_pred             HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                            .|....++..+|.++...|++++|+.+|++++.+.
T Consensus        75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                  45668899999999999999999999999999874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.43  E-value=3e-12  Score=91.15  Aligned_cols=123  Identities=12%  Similarity=-0.015  Sum_probs=102.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           53 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        53 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      ..+.....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            34567788999999999999999999999999875        4455788999999999999999999999999986   


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  201 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  201 (394)
                           .|....++..+|.++...|++++|+.++++++.....       .   ..++..++.++...|+
T Consensus        80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~---~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-------C---KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-------G---THHHHHHHHHHHHHTC
T ss_pred             -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-------c---hHHHHHHHHHHHHhcC
Confidence                 2334567899999999999999999999999986432       2   2345778888877664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.42  E-value=6.3e-10  Score=90.51  Aligned_cols=223  Identities=9%  Similarity=0.009  Sum_probs=162.5

Q ss_pred             HhhhchH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhc----------hhHHHHHHHHHHHHHHHhcCCC
Q 016124           27 STLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        27 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ...|.++ +|+..+.+++.+        .|....+++..+.+....|.          +++++.++..++..        
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------  103 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  103 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence            4566665 688888888775        35556677777888877766          57777777777765        


Q ss_pred             CcchHhhhHhHHHHHHHhCc--HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGK--AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRVI  172 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  172 (394)
                      +|....++...+.++...|+  +++++.++.++++.        +|....++...+.+....|. +++++.++.++++..
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~  175 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  175 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence            67778899999999999994  89999999999986        56666789999999999998 699999999999863


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIV--------------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  238 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  238 (394)
                      .       .+   ..++...+.++...              +.++++++++.+++.+        +|....+++.+..++
T Consensus       176 p-------~N---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          176 F-------SN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLL  237 (331)
T ss_dssp             S-------CC---HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred             C-------CC---HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence            2       22   34557777777766              4578888998888875        456666776555555


Q ss_pred             HHc-----------ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH---hhcChHHHHHHHHHHHHH
Q 016124          239 SRS-----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       239 ~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~  299 (394)
                      ...           +.++++++.+.+++++        .|+...++..++.+..   ..|..++...++.+.+++
T Consensus       238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          238 GAGSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HhccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            544           4577888888888774        3444555555544332   246667777777777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.41  E-value=6.7e-12  Score=92.94  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  133 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  133 (394)
                      .+..+..+..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++.+    
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            4567788999999999999999999999999987        4566789999999999999999999999999987    


Q ss_pred             hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                          +|....++.++|.++...|++++|+..|++++++..
T Consensus        75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence                344567899999999999999999999999999864

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.41  E-value=1.5e-11  Score=90.87  Aligned_cols=130  Identities=15%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-CCc-------hHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLD-------DSIMENMRIDLAELLHIVGRGQEGRELLE  210 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (394)
                      ...+..+...|..+...|+|++|+..|.+++.+....... .+.       .+....++.++|.++...|++++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            4456788999999999999999999999999986542100 111       45556788999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch-HHHHHHHHHHHhhc
Q 016124          211 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHLN  284 (394)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g  284 (394)
                      +++.+        +|....++..+|.++...|++++|+..|++++.+        .|... .+...++.+....+
T Consensus        88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHH
Confidence            99986        4667789999999999999999999999999985        34433 34445555544433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.41  E-value=6.2e-13  Score=115.44  Aligned_cols=155  Identities=19%  Similarity=0.188  Sum_probs=123.0

Q ss_pred             HhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC-------CchHHH
Q 016124           70 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG  142 (394)
Q Consensus        70 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  142 (394)
                      ..+++++|+..++.++..        .+..+..+..+|..+...|++++|+..|++++.+.......       ..+...
T Consensus       246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  317 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL  317 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence            456677888777776665        35567889999999999999999999999999975331000       012346


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      .++.++|.++..+|++++|+..+++++++..       +.   ..+++++|.+|..+|++++|+..|++++++       
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------  380 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-------AN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------  380 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------cc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            7899999999999999999999999999743       22   456799999999999999999999999875       


Q ss_pred             CCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124          223 EHPSFVTHLLNLAASYSRSKNFVEAERL  250 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~~~~A~~~  250 (394)
                       .|....++..++.++...+++++|...
T Consensus       381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          381 -NPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             455667889999999999999888753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.41  E-value=4.1e-13  Score=116.98  Aligned_cols=181  Identities=10%  Similarity=-0.012  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +..+.++..+|..+...|++++|+..|++++++..       +.   ..++.++|.++..+|++++|+..+++++++   
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-------~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-------SN---AIYYGNRSLAYLRTECYGYALGDATRAIEL---   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------cc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence            34455677888999999999999999999999742       22   556789999999999999999999999985   


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH--HHhhcChHHHHHHHH--
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT--LYHLNRDKEAEKLVL--  294 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--  294 (394)
                           +|....++.++|.++..+|++++|+..+++++++        .|....++..++.+  +...|++++|++.++  
T Consensus        70 -----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           70 -----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                 5667789999999999999999999999999985        34444567777777  888999999999999  


Q ss_pred             ---------HHHHHHHHHcCCCChh---HHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHh
Q 016124          295 ---------EALYIREIAFGKDSLP---VGEALDCLVSIQTRLGEDD-TKLLELLKRVLRIQER  345 (394)
Q Consensus       295 ---------~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~-~~A~~~~~~al~~~~~  345 (394)
                               +++.+.....++..+.   ....+..+...+...+... ..+...+.++.++..+
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                     5555443333443443   2233344444454444433 2455577777777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.40  E-value=2e-10  Score=93.80  Aligned_cols=245  Identities=9%  Similarity=-0.048  Sum_probs=181.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL   90 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~   90 (394)
                      .|+...++..+..+....+..++|+..+.+++.+        .|....+++..+.++...| .+++++..+.+++..   
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---  118 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---  118 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT---
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---
Confidence            4566677777776777777778999999999987        3455677888999999999 599999999999875   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHh-C-cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHH--------H
Q 016124           91 NRGTESADLVLPLFSLGSLFIKE-G-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--------E  160 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~  160 (394)
                           +|....+++..+.++... + ++++++.++.++++.        +|....++...+.+....|.++        +
T Consensus       119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e  185 (349)
T 3q7a_A          119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGS  185 (349)
T ss_dssp             -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence                 677888999999999988 7 889999998888764        5666678888888888888777        9


Q ss_pred             HHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 016124          161 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------GQEGRELLEECLLITEKYKGKEHPSFVTHLLN  233 (394)
Q Consensus       161 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (394)
                      +++++.++++.....          ..++...+.++...++       ++++++++++++.+        +|....+++.
T Consensus       186 ELe~~~k~I~~dp~N----------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Y  247 (349)
T 3q7a_A          186 ELDWCNEMLRVDGRN----------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNY  247 (349)
T ss_dssp             HHHHHHHHHHHCTTC----------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCC----------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            999999998864321          4567888889888887       67888888888875        5667778888


Q ss_pred             HHHHHHHcccHHH------------HHH-HHHHHHHHHHhhcCC-----CCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          234 LAASYSRSKNFVE------------AER-LLRICLDIMTKTVGP-----DDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       234 la~~~~~~g~~~~------------A~~-~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      +..++...|+...            .+. .+....+.+....+.     ..+....++..|+.+|...|+.++|.+.++.
T Consensus       248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~  327 (349)
T 3q7a_A          248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK  327 (349)
T ss_dssp             HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8888887776410            000 011111222222211     1245667888999999999999999988887


Q ss_pred             HHH
Q 016124          296 ALY  298 (394)
Q Consensus       296 a~~  298 (394)
                      ..+
T Consensus       328 l~~  330 (349)
T 3q7a_A          328 LSS  330 (349)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.40  E-value=1.8e-12  Score=97.39  Aligned_cols=125  Identities=13%  Similarity=0.164  Sum_probs=102.2

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhh
Q 016124           24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  103 (394)
Q Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  103 (394)
                      ..+...|++++|+..+++++...        |....++..+|.++...|++++|+.+|++++.+.        |....++
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~   81 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELY   81 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHH
Confidence            33567899999999999998862        3335678999999999999999999999999873        3456788


Q ss_pred             HhHHHH-HHHhCcH--HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          104 FSLGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       104 ~~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ..+|.+ +...|++  ++|+..+++++..        .|....++..+|.++...|++++|+..+++++++.
T Consensus        82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           82 AALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            999999 8899999  9999999999987        34445678899999999999999999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.40  E-value=5.2e-12  Score=109.69  Aligned_cols=143  Identities=17%  Similarity=0.282  Sum_probs=116.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   83 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   83 (394)
                      ..|..+..+..+|..++..|+|++|+..|++++.+......       ...+....++.++|.++...|++++|+..|++
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            35678889999999999999999999999999997543100       01234478899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           84 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      ++.+        .|....+++++|.++..+|++++|+..|++++++        .|....++..++.++...+++++|..
T Consensus       343 al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          343 ALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997        4567889999999999999999999999999986        45556788999999999999988875


Q ss_pred             H-HHHHH
Q 016124          164 L-YKKAL  169 (394)
Q Consensus       164 ~-~~~a~  169 (394)
                      . +.+++
T Consensus       407 ~~~~~~f  413 (457)
T 1kt0_A          407 RIYANMF  413 (457)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            3 44433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.40  E-value=5.9e-12  Score=94.59  Aligned_cols=122  Identities=12%  Similarity=0.128  Sum_probs=99.9

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016124           68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  147 (394)
Q Consensus        68 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  147 (394)
                      +...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++.+.        |....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence            45678999999999999886        45667889999999999999999999999999873        223457889


Q ss_pred             HHHH-HHHCCCH--HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          148 LAHA-KCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       148 la~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      +|.+ +...|++  ++|+..+++++...       |+.   ..++..+|.++...|++++|+..+++++..
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALALD-------SNE---ITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhC-------CCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  99999999999863       222   345688999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.39  E-value=8.2e-11  Score=96.07  Aligned_cols=241  Identities=12%  Similarity=-0.012  Sum_probs=176.8

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcccC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      ..++..+..+....+..++|+..+.+++.+        +|....+++..+.++...| .+++++.++.+++...      
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n------  119 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN------  119 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC------
Confidence            344455555556666778999999999987        5666678999999999999 5999999999999753      


Q ss_pred             CCchHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHH--------HHH
Q 016124          179 SLDDSIMENMRIDLAELLHIV-G-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV--------EAE  248 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~  248 (394)
                       |..   ..++...+.++... + ++++++.++.+++.        .+|....++...+.+....|.++        +++
T Consensus       120 -PKn---y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL  187 (349)
T 3q7a_A          120 -LKS---YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL  187 (349)
T ss_dssp             -CCC---HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             -CCc---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence             333   44567788888887 7 89999999888875        46777889999999999988888        899


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC-------hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  321 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  321 (394)
                      +++.++++.        +|....++...+.++...++       ++++++++.+++.+.        |....++..+..+
T Consensus       188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLRGF  251 (349)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence            999988873        57778899999999998887       678888888887753        5556678888888


Q ss_pred             HHHhCCCch-----------HHHH-HHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          322 QTRLGEDDT-----------KLLE-LLKRVLRIQEREFGSE-----SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       322 ~~~~g~~~~-----------~A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      +...|+...           ..+. .+....+......+..     .+....++.-|+.+|...|+.++|.++++...
T Consensus       252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888887510           0000 0122223333332221     13445678889999999999999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=2.6e-11  Score=85.76  Aligned_cols=116  Identities=11%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .++.+|..+...|++++|+..|++++..     .++++....++..+|.++...|++++|+..|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4678999999999999999999999886     3455555678999999999999999999999999986     33444


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  148 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  148 (394)
                      ....++..+|.++...|++++|+..+++++...     ++++....+...+
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l  119 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERL  119 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHH
Confidence            557889999999999999999999999999862     4455444444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.37  E-value=1.5e-11  Score=86.24  Aligned_cols=118  Identities=18%  Similarity=0.332  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      ...++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++..       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            46778999999999999999999999998762        223457889999999999999999999999876       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  156 (394)
                       .|....++..+|.++...|++++|..++++++..        .|....++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             3445678889999999999999999999999886        2333456677787776543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=3.9e-11  Score=84.80  Aligned_cols=103  Identities=13%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      .++.+|.++...|++++|+..|++++..     .++++....++..+|.++...|++++|+..|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4677899999999999999999999886     3445555578999999999999999999999999986     34455


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ....++..+|.++...|++++|+..+++++...
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            557789999999999999999999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.36  E-value=6.1e-11  Score=83.93  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=99.6

Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                      .+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++......   
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc---
Confidence            4567889999999999999999999999986        23345678999999999999999999999999987652   


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  242 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  242 (394)
                      .++.+....++..+|.++...|++++|+.++++++..        .|. ......++.+....+
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHHH
Confidence            3445555778899999999999999999999999885        122 344555665554433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.36  E-value=9.3e-12  Score=89.12  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|..+..+..+|..++..|++++|+..|++++...        |....++..+|.++...|++++|+..+++++.+    
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----   72 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----   72 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence            34456788999999999999999999999999872        334568999999999999999999999999987    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                          .|....++..+|.++...|++++|+..|++++.+...
T Consensus        73 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                4556788999999999999999999999999998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.35  E-value=5.2e-11  Score=83.46  Aligned_cols=117  Identities=21%  Similarity=0.375  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            567889999999999999999999999876        3445678899999999999999999999999876        


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  200 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  200 (394)
                      .|....++..+|.++...|++++|+.++++++...       |+.+   .++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~---~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNA---EAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH---HHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcH---HHHHHHHHHHHhcc
Confidence            23334578899999999999999999999999863       2222   34466777776544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=2.7e-11  Score=101.82  Aligned_cols=134  Identities=13%  Similarity=0.148  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   85 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   85 (394)
                      ..+..+..+|..++..|++++|+..|++++.+.....        ....|....++.++|.++...|++++|+.++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4567789999999999999999999999999765420        11356778899999999999999999999999999


Q ss_pred             HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      ++        .|....+++.+|.++...|++++|+..|++++++        .|....++..++.++...++++++..
T Consensus       301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            85        4667889999999999999999999999999987        23334567788888888888777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.34  E-value=7.2e-11  Score=83.56  Aligned_cols=106  Identities=8%  Similarity=0.152  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...... +.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            4567889999999999999999999999986        34456788999999999999999999999999986542 22


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      +.+....++..+|.++...|++++|+.+++++++.
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33444778999999999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.32  E-value=1.2e-10  Score=83.25  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=90.9

Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      .+..+..+..+|.++...|++++|+..|.+++..        .|....++.++|.++...|++++|+..+++++.+..  
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--   74 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--   74 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--
Confidence            4556788999999999999999999999999987        344456899999999999999999999999998642  


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                           +.   ..++..+|.++...|++++|+..+++++.+...
T Consensus        75 -----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           75 -----QS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -----TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----hh---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                 22   346789999999999999999999999998765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3.2e-11  Score=87.52  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=92.6

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +|..+..+..+|..+...|++++|+.+|++++..     .++++....++..+|.++...|++++|+..+++++..    
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   94 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----   94 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            4556788899999999999999999999999875     3444556788999999999999999999999999987    


Q ss_pred             cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                          .|....++..+|.++...|++++|+.++++++.+
T Consensus        95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                3455788999999999999999999999999987

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.31  E-value=1.5e-11  Score=85.58  Aligned_cols=97  Identities=14%  Similarity=0.026  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      .++.+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        .|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4677899999999999999999999987        5667889999999999999999999999999987        34


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ....++..+|.++...|++++|+..+++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            445688999999999999999999999998753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.31  E-value=7.3e-10  Score=88.70  Aligned_cols=185  Identities=12%  Similarity=0.076  Sum_probs=128.1

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      ...+..+|.++...|++++|+..+.+.+..     ++ .+....+...++.++..+|+++.|.+.++++.+..+..  ..
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~  171 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VS  171 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cc
Confidence            344568999999999999999999998643     11 13667788889999999999999999999987652100  00


Q ss_pred             CchHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                      .+...+  +...-|.+....|  ++.+|..+|+++..        ..|.  ....+.+   ++..+|++++|...++..+
T Consensus       172 ~~d~~l--~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          172 GDNEMI--LNLAESYIKFATNKETATSNFYYYEELSQ--------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHHHH--HHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred             cchHHH--HHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence            011211  2222344455556  99999999999654        2343  2233333   8999999999999999766


Q ss_pred             HHHHhhcCCC--CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 016124          256 DIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  312 (394)
Q Consensus       256 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  312 (394)
                      +........+  .|....++.+++.+....|+  +|.+++.++....     |+||.+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-----P~hp~i~  290 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-----HEHAFIK  290 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-----CCCHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-----CCChHHH
Confidence            5432210000  25677888899888888997  8888888887754     7887643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.31  E-value=1.1e-10  Score=98.08  Aligned_cols=135  Identities=18%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc------cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      .+..+..+|..+...|++++|+..|++++++.....      ......+....++.++|.++..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            445688999999999999999999999999654310      00013455677889999999999999999999999997


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  291 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (394)
                      +        .|....++..+|.++...|++++|+..|++++++        .|....++..++.++...++.+++..
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4        4667889999999999999999999999999985        35556778889999998888887754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=1.8e-11  Score=85.17  Aligned_cols=96  Identities=11%  Similarity=0.019  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++++        .|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678999999999999999999999986        2445678899999999999999999999999997        56


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ....++..+|.++...|++++|+..++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66788999999999999999999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.29  E-value=1.1e-09  Score=87.59  Aligned_cols=264  Identities=12%  Similarity=0.037  Sum_probs=164.7

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      ++.+ .-.+-.|+|..++.-..+        +.+..+..  ....+.++|..+|++....               .+.|.
T Consensus        17 lf~i-kn~fy~G~yq~~i~e~~~--------~~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~   70 (310)
T 3mv2_B           17 YFNI-KQNYYTGNFVQCLQEIEK--------FSKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL   70 (310)
T ss_dssp             THHH-HHHHTTTCHHHHTHHHHT--------SSCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT
T ss_pred             HHHH-HHHHHhhHHHHHHHHHHh--------cCccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH
Confidence            3444 334558999888873321        12233332  4455678888889887421               12222


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  178 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  178 (394)
                       ..+...++..+.  ++   |+..+++.+..       ..+. ..++..+|.++...|++++|+..+.+.+..       
T Consensus        71 -~~a~~~la~~~~--~~---a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-------  129 (310)
T 3mv2_B           71 -GKVLDLYVQFLD--TK---NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDN-------  129 (310)
T ss_dssp             -HHHHHHHHHHHT--TT---CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-------
T ss_pred             -HHHHHHHHHHhc--cc---HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------
Confidence             223333444332  22   56666555432       1122 233468999999999999999999998652       


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc----HHHHHHHH--HHHHHHcc--cHHHHHHH
Q 016124          179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS----FVTHLLNL--AASYSRSK--NFVEAERL  250 (394)
Q Consensus       179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~  250 (394)
                      ++ ......++..++.++..+|+.+.|.+.+++..+.        +|+    .-.+...+  +++....|  ++.+|..+
T Consensus       130 ~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~  200 (310)
T 3mv2_B          130 DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYY  200 (310)
T ss_dssp             SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH
T ss_pred             CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            22 1223455677899999999999999999987664        231    11233344  44466566  99999999


Q ss_pred             HHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHhC
Q 016124          251 LRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD--SLPVGEALDCLVSIQTRLG  326 (394)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g  326 (394)
                      |+++.+        ..|.  ....+.+   ++..+|++++|...++.+++..-..-..+  .|..+.++.+++.+....|
T Consensus       201 f~El~~--------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          201 YEELSQ--------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             HHHHHT--------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH--------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            999754        2343  2223333   89999999999999997665531100000  1445667888888888888


Q ss_pred             CCchHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 016124          327 EDDTKLLELLKRVLRIQEREFGSESEEVMLT  357 (394)
Q Consensus       327 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  357 (394)
                      +   +|.++++++.+.     .|+||...+.
T Consensus       270 k---~a~~l~~qL~~~-----~P~hp~i~d~  292 (310)
T 3mv2_B          270 L---DTEDLTNQLVKL-----DHEHAFIKHH  292 (310)
T ss_dssp             C---TTHHHHHHHHHT-----TCCCHHHHHH
T ss_pred             h---HHHHHHHHHHHh-----CCCChHHHHH
Confidence            6   677888888764     4778766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=9.3e-11  Score=81.25  Aligned_cols=99  Identities=13%  Similarity=0.043  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   94 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   94 (394)
                      .+..+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999999862        233567889999999999999999999999987       


Q ss_pred             CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                       .|....++..+|.++...|++++|...+++++..
T Consensus        68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence             3455778999999999999999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.28  E-value=1.3e-11  Score=102.62  Aligned_cols=145  Identities=17%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC--C-------chHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--K-------TSILLVTSLLGMAKVLGSIGRAKKAVEIYH   82 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   82 (394)
                      .+..+..+..+|..++..|++++|+..|++++.+......  .       .......++.++|.++...|++++|+..++
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567888999999999999999999999999987422100  0       000011478999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHCCCHHHH
Q 016124           83 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEA  161 (394)
Q Consensus        83 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A  161 (394)
                      +++.+        .|....+++++|.++..+|++++|+..|++++.+        .|....++..++.+ ....+..+++
T Consensus       255 ~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          255 IVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99987        4566789999999999999999999999999876        34445567777777 4456677888


Q ss_pred             HHHHHHHHHHH
Q 016124          162 VELYKKALRVI  172 (394)
Q Consensus       162 ~~~~~~a~~~~  172 (394)
                      ...|.+++...
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            88998888754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-10  Score=83.08  Aligned_cols=119  Identities=10%  Similarity=0.007  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  218 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  218 (394)
                      +.....+..+|..+...|++++|+..|+++++.       .++++....++.++|.++...|++++|+..+++++..   
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence            445678899999999999999999999999874       4555555678899999999999999999999999886   


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 016124          219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  280 (394)
Q Consensus       219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  280 (394)
                           .|....++..+|.++...|++++|+..+++++.+        .|....++..++.+.
T Consensus        95 -----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 -----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             -----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             -----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence                 3445778899999999999999999999999984        344455555555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.28  E-value=1.6e-08  Score=91.05  Aligned_cols=232  Identities=13%  Similarity=0.135  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH
Q 016124          117 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV-ELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  195 (394)
Q Consensus       117 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~  195 (394)
                      +.....|++++..        .|.....+...+..+...|+.++|. ..|++++..+.       ..   ...+...+..
T Consensus       326 ~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-------~s---~~Lwl~~a~~  387 (679)
T 4e6h_A          326 ARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-------NS---AVLAFSLSEQ  387 (679)
T ss_dssp             HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-------TC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHH
Confidence            3455678888775        2344567788888888899999997 99999987542       22   2345678889


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhC---CCCc-----------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124          196 LHIVGRGQEGRELLEECLLITEKYKG---KEHP-----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  261 (394)
Q Consensus       196 ~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  261 (394)
                      ....|++++|...|++++........   +..|           ....++...+.+..+.|+.+.|..+|.+|++..   
T Consensus       388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---  464 (679)
T 4e6h_A          388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---  464 (679)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Confidence            99999999999999999986421110   0012           244567777888888999999999999998731   


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          262 VGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       262 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                          .+.....+...|.+-...| +.+.|..+|+.+++..     ++.+.   .+...+......|+.+ .|...|++++
T Consensus       465 ----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~---~w~~y~~fe~~~~~~~-~AR~lferal  531 (679)
T 4e6h_A          465 ----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGE---YINKYLDFLIYVNEES-QVKSLFESSI  531 (679)
T ss_dssp             ----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHH---HHHHHHHHHHHHTCHH-HHHHHHHHHT
T ss_pred             ----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchH---HHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence                1122345556666666655 4899999999999976     34443   4556677778889888 9999999998


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ...     ++.......+......-...|+.+.+..+.+++.+..++
T Consensus       532 ~~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          532 DKI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             TTS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             Hhc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            632     111245677788888888999999999999999887765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.27  E-value=4.4e-10  Score=77.77  Aligned_cols=113  Identities=15%  Similarity=0.076  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      +..+..+|.++...|++++|+..+++++....       +.   ..++..+|.++...|++++|+..+++++..      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-------HN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-------Cc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh------
Confidence            45688899999999999999999999998632       22   345688999999999999999999999885      


Q ss_pred             CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 016124          222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  280 (394)
Q Consensus       222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  280 (394)
                        .|....++..+|.++...|++++|...+++++..        .|....++..++.+.
T Consensus        68 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 --KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence              3455678899999999999999999999999872        455556666666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.24  E-value=3.2e-11  Score=83.58  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH
Q 016124           28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  107 (394)
Q Consensus        28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  107 (394)
                      ..|++++|+.+|++++.+     +.++|....++..+|.++...|++++|+..++++++.        .|....++..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999874     2335788899999999999999999999999999987        455678899999


Q ss_pred             HHHHHhCcHHHHHHHHHHHHHHH
Q 016124          108 SLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999873

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.20  E-value=4.4e-11  Score=99.54  Aligned_cols=143  Identities=17%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC---------CcchHhhhHhHHHHHHHhCcHHHHHHHHHH
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKEGKAVDAESVFSR  125 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  125 (394)
                      +..+..+..+|..++..|++++|+..|++++.+........         ......++.++|.++...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45667788999999999999999999999998732110000         000113789999999999999999999999


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH-HHHcCChHH
Q 016124          126 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-LHIVGRGQE  204 (394)
Q Consensus       126 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~  204 (394)
                      ++.+        +|....+++++|.+|...|++++|+..|++++++..       ++   ..++..++.+ ....+..++
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-------~~---~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-------DD---KAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CC---HHHHHHHHHHHHHHHHHHHH
Confidence            9987        345567899999999999999999999999987642       22   2344667766 344566778


Q ss_pred             HHHHHHHHHHH
Q 016124          205 GRELLEECLLI  215 (394)
Q Consensus       205 A~~~~~~a~~~  215 (394)
                      +...|.+++..
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            88888887765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.18  E-value=1.6e-10  Score=79.18  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..++++++..    
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----   70 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----   70 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence            445678899999999999999999999999986        23334578899999999999999999999999853    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLI  215 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  215 (394)
                         +. .....++..+|.++... |++++|+.++++++..
T Consensus        71 ---~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           71 ---ED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             ---CC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             ---cc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence               22 00134668999999999 9999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.17  E-value=2e-10  Score=79.52  Aligned_cols=89  Identities=16%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 016124          154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  233 (394)
Q Consensus       154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (394)
                      ..|++++|+.+|++++++       +++.|....++.++|.++...|++++|+.++++++..        .|....++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-------~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~   66 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVF   66 (117)
T ss_dssp             -----CCCHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHH
Confidence            468999999999999874       2234556778899999999999999999999999986        4556788999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHH
Q 016124          234 LAASYSRSKNFVEAERLLRICLDI  257 (394)
Q Consensus       234 la~~~~~~g~~~~A~~~~~~a~~~  257 (394)
                      +|.++...|++++|+..+++++..
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999985

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=3.2e-09  Score=94.22  Aligned_cols=177  Identities=7%  Similarity=-0.033  Sum_probs=148.6

Q ss_pred             Hhhch-hHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCc----------HHHHHHHHHHHHHHHHHhhCCCc
Q 016124           70 SIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        70 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..|++ ++|+..+.+++.+        +|....+++..+.++...|+          +++++..+.+++..        +
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~  103 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  103 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence            44544 5779999999987        67788899999999999988          99999999999876        5


Q ss_pred             hHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLI  215 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~  215 (394)
                      |....+|...+.++...|  ++++++.++.++++...+.          ..+|...+.+....| .++++++++.++++ 
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N----------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-  172 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN----------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-  172 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc----------ccHHHHHHHHHHHcCCChHHHHHHHHHHHH-
Confidence            666778999999999999  7799999999999974332          456788899999999 89999999998876 


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  281 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  281 (394)
                             .+|....++...+.++...              +.++++++++.+++.+        .|....+|..++.++.
T Consensus       173 -------~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          173 -------RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             -------TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHS
T ss_pred             -------HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHh
Confidence                   3677788999999998875              6789999999999884        4667788999999998


Q ss_pred             hhcChHH
Q 016124          282 HLNRDKE  288 (394)
Q Consensus       282 ~~g~~~~  288 (394)
                      ..+++++
T Consensus       238 ~~~~~~~  244 (567)
T 1dce_A          238 RAEPHDV  244 (567)
T ss_dssp             CCCCCSC
T ss_pred             cCCCccc
Confidence            8887555

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.11  E-value=6.6e-10  Score=76.07  Aligned_cols=96  Identities=15%  Similarity=0.032  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124          188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  267 (394)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  267 (394)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..        .|
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~   71 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IE   71 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------Cc
Confidence            4577999999999999999999999885        3445678899999999999999999999999983        34


Q ss_pred             c--chHHHHHHHHHHHhh-cChHHHHHHHHHHHHH
Q 016124          268 S--ISFPMLHLGITLYHL-NRDKEAEKLVLEALYI  299 (394)
Q Consensus       268 ~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  299 (394)
                      .  ...++..+|.++... |++++|+.++++++..
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            4  678899999999999 9999999999998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.11  E-value=6.4e-10  Score=79.11  Aligned_cols=87  Identities=11%  Similarity=0.122  Sum_probs=76.0

Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchh----------HHHHHHHHHHHHHHHhcCCCC
Q 016124           27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK----------KAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .+.+.|++|+..+++++++        .|..+.++.++|.++...|+++          +|+..|++++++        +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            4567899999999999987        3556678999999999998764          999999999998        6


Q ss_pred             cchHhhhHhHHHHHHHhC-----------cHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEG-----------KAVDAESVFSRILKI  129 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  129 (394)
                      |....+++++|.+|..+|           ++++|+.+|++|+++
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            778899999999999885           899999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=2.4e-09  Score=95.00  Aligned_cols=172  Identities=13%  Similarity=-0.050  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhcccCCCchHHH
Q 016124          116 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN----------AEEAVELYKKALRVIKDSNYMSLDDSIM  185 (394)
Q Consensus       116 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~  185 (394)
                      .++|+..+.+++.+        +|....+++..+.++...|+          +++++..+++++....+.          
T Consensus        45 ~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----------  106 (567)
T 1dce_A           45 DESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----------  106 (567)
T ss_dssp             SHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----------
T ss_pred             CHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----------
Confidence            36789999999987        56667789999999999888          999999999999864332          


Q ss_pred             HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhhc
Q 016124          186 ENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKTV  262 (394)
Q Consensus       186 ~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~  262 (394)
                      ..+|...+.++...|  +++++++.++++++.        +|....+|...+.+....| .++++++++.++++      
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~------  172 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT------  172 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT------
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH------
Confidence            456788999999999  669999999999986        5677789999999999999 89999999988876      


Q ss_pred             CCCCCcchHHHHHHHHHHHhh--------------cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124          263 GPDDQSISFPMLHLGITLYHL--------------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  328 (394)
Q Consensus       263 ~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  328 (394)
                        .+|....+|...+.++...              +.+++|++++.+++.+.        |....+|..++.++...+.+
T Consensus       173 --~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--------P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          173 --RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             --TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--------SSCSHHHHHHHHHHSCCCCC
T ss_pred             --HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--------CCCccHHHHHHHHHhcCCCc
Confidence              4678889999999998875              56789999999988754        33445788999999888875


Q ss_pred             c
Q 016124          329 D  329 (394)
Q Consensus       329 ~  329 (394)
                      +
T Consensus       243 ~  243 (567)
T 1dce_A          243 D  243 (567)
T ss_dssp             S
T ss_pred             c
Confidence            5

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.09  E-value=8e-08  Score=86.63  Aligned_cols=230  Identities=10%  Similarity=0.054  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHH
Q 016124           33 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITILELNRGTESADLVLPLFSLGSLFI  111 (394)
Q Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~  111 (394)
                      +.....|++++..+        |.....+...+......|+.++|. ..|++|+..        .|.....+...+.+..
T Consensus       326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence            34566788888763        334567788888899999999997 999999875        3444566778899999


Q ss_pred             HhCcHHHHHHHHHHHHHHHHHhh------CCCc--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124          112 KEGKAVDAESVFSRILKIYTKVY------GEND--------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus       112 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      ..|++++|...|++++.......      .+.+        .....++...+....+.|..+.|..+|.+|++....   
T Consensus       390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~---  466 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL---  466 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG---
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---
Confidence            99999999999999998643111      0110        123446777777778889999999999999875211   


Q ss_pred             CCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                         ..   ..++...|.+....+ +++.|..+|+.+++.+        |.....+...+......|+.+.|..+|++++.
T Consensus       467 ---~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          467 ---VT---PDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             ---SC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             ---CC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence               11   123344566665655 5899999999999864        22233455667778888999999999999987


Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ..     ++.......+......-...|+.+.+....+++.+..
T Consensus       533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            32     1112345566777777788999999999999987765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.05  E-value=8e-10  Score=78.60  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=76.9

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH----------HHHHHHHHHHHHHHHHhhCCCc
Q 016124           69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      .+.+.|++|+..+++++++        .|..+.++.++|.++...+++          ++|+..|++++++        +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            3567899999999999987        677889999999999999876          5999999999988        5


Q ss_pred             hHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRVI  172 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~  172 (394)
                      |....+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            667788999999999875           8999999999999974

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=4.3e-09  Score=68.93  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      ++|..+.++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++.+   
T Consensus         4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---   72 (91)
T 1na3_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---   72 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            345677889999999999999999999999999862        233567889999999999999999999999987   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhC
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEG  114 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g  114 (394)
                           .|....++..+|.++...|
T Consensus        73 -----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHHHhcC
Confidence                 4555678888998887664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.99  E-value=6.1e-09  Score=68.18  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124           55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      +....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++.+     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            456678899999999999999999999999986        3455678999999999999999999999999986     


Q ss_pred             CCCchHHHHHHHHHHHHHHHCC
Q 016124          135 GENDGRVGMAMCSLAHAKCANG  156 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~~g  156 (394)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               3344567788888877654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.96  E-value=5.7e-10  Score=76.33  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=80.9

Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  179 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  179 (394)
                      +..+..+|.++...|++++|+..|++++.+        .|....++.++|.++...|++++|+..+++++++...    .
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST----A   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS----T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----c
Confidence            467889999999999999999999999987        3344567899999999999999999999999986432    1


Q ss_pred             CchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124          180 LDDSIMENMRIDLAELLHIVGRGQEGRELLE  210 (394)
Q Consensus       180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (394)
                      ++......++..+|.++...|+++.|+..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            2334456778899999999998888776554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.2e-09  Score=74.63  Aligned_cols=93  Identities=12%  Similarity=0.018  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  265 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  265 (394)
                      ...+..+|.++...|++++|+..+++++.+        .|....++.++|.++...|++++|+..+++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            345688999999999999999999999986        3555778999999999999999999999999873        


Q ss_pred             CCcc------hHHHHHHHHHHHhhcChHHHHHHHH
Q 016124          266 DQSI------SFPMLHLGITLYHLNRDKEAEKLVL  294 (394)
Q Consensus       266 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~  294 (394)
                      .|..      ..++..+|.++...|+++.|+..++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            3333      6778899999999998888766554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.91  E-value=2.1e-08  Score=68.88  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Q 016124           75 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  154 (394)
Q Consensus        75 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  154 (394)
                      ++|+..|++++..        .|....++..+|.++...|++++|+..|++++..        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3577788887764        4566789999999999999999999999999987        34445688999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 016124          155 NGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       155 ~g~~~~A~~~~~~a~~~~~~  174 (394)
                      .|++++|+..+++++++...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999998654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=4.7e-08  Score=67.15  Aligned_cols=84  Identities=25%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh
Q 016124          203 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  282 (394)
Q Consensus       203 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  282 (394)
                      ++|+..+++++..        .|....++..+|.++...|++++|+..+++++.+        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3567777777753        4566788999999999999999999999999984        45667889999999999


Q ss_pred             hcChHHHHHHHHHHHHHHHH
Q 016124          283 LNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       283 ~g~~~~A~~~~~~a~~~~~~  302 (394)
                      .|++++|+..|++++.+...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999987643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.87  E-value=4.6e-08  Score=65.17  Aligned_cols=71  Identities=18%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  302 (394)
                      +|....++..+|.++...|++++|+..|++++++        .|....++..+|.++...|++++|+..+++++++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4566778999999999999999999999999985        4566778999999999999999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.86  E-value=4.2e-08  Score=65.38  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      +|....+++.+|.++...|++++|+..|++++++        .|....++..+|.+|...|++++|+..+++++++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4666788999999999999999999999999987        3444558999999999999999999999999998654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=9.3e-08  Score=67.94  Aligned_cols=109  Identities=17%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 016124          156 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  235 (394)
Q Consensus       156 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  235 (394)
                      +++++|+.+|+++.+.       + ++.    +.  +|.+|...+..++|+.+|+++.+.          ....+.+++|
T Consensus         9 ~d~~~A~~~~~~aa~~-------g-~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------N-EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------T-CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------C-CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHH
Confidence            4688999999999874       1 111    11  899999999999999999999763          2356889999


Q ss_pred             HHHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHH
Q 016124          236 ASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  298 (394)
Q Consensus       236 ~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  298 (394)
                      .+|..    .+++++|+.+|+++.+.          ....+..+||.+|..    .+++++|+.+|+++.+
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            99998    89999999999999872          345788999999999    8999999999999987

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=4.2e-08  Score=69.73  Aligned_cols=110  Identities=9%  Similarity=-0.011  Sum_probs=90.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 016124          200 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  279 (394)
Q Consensus       200 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  279 (394)
                      +++++|+.+|+++.+.       .++..   .  +|.+|...+..++|+.+|+++.+.          ....+..+||.+
T Consensus         9 ~d~~~A~~~~~~aa~~-------g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------NEMFG---C--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------CCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence            3678899999998764       23332   2  999999999999999999999872          345788999999


Q ss_pred             HHh----hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHH
Q 016124          280 LYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       280 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~A~~~~~~al~~  342 (394)
                      |..    .+++++|+.+|+++.+.       .+   ..+..+||.+|..    .++++ +|+.+|+++.+.
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~~  126 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEK-QAVKTFEKACRL  126 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHHC
Confidence            998    89999999999999762       22   4578999999999    78888 999999999873

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.78  E-value=5.9e-07  Score=78.50  Aligned_cols=166  Identities=14%  Similarity=0.037  Sum_probs=122.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHh
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~  260 (394)
                      ..+-..+.+.|+.++|+.+|++....     | -.|+ ..+++.+-.++...         +..++|.++|++...    
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----   98 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----   98 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----
Confidence            45567888999999999999987653     1 1233 34566666666543         346788888887655    


Q ss_pred             hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                         ........++..+...|...|++++|..++++....       .......++..+...+.+.|+.+ +|.++|++..
T Consensus        99 ---~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~Pd~~tyn~lI~~~~~~g~~~-~A~~l~~~M~  167 (501)
T 4g26_A           99 ---DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-------GIQPRLRSYGPALFGFCRKGDAD-KAYEVDAHMV  167 (501)
T ss_dssp             ---TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred             ---hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCccceehHHHHHHHHCCCHH-HHHHHHHHHH
Confidence               222334567889999999999999999999887542       11223457888999999999999 9999998876


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  384 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  384 (394)
                      +.   -.   .|+ ..++..|...+.+.|+.++|.+++++..+.
T Consensus       168 ~~---G~---~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          168 ES---EV---VPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HT---TC---CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hc---CC---CCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            52   11   222 457888999999999999999999987654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.72  E-value=1.9e-06  Score=75.32  Aligned_cols=167  Identities=9%  Similarity=0.013  Sum_probs=122.9

Q ss_pred             hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHH
Q 016124          102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---------NAEEAVELYKKALRVI  172 (394)
Q Consensus       102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a~~~~  172 (394)
                      .+..+-..+.+.|++++|..+|+++.+.     | -.|+ ..+++.+-.++...+         ..++|..+|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3455567888999999999999998764     1 1222 345666666665544         368888888876652 


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                          ...|+.    .++..+...|.+.|++++|..++++....     | -.| ...+++.+...|.+.|+.++|.++|+
T Consensus       100 ----G~~Pd~----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          100 ----KVVPNE----ATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQP-RLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             ----TCCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-ccceehHHHHHHHHCCCHHHHHHHHH
Confidence                123332    35677889999999999999999886542     1 223 34578889999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  298 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  298 (394)
                      +..+       ........++..|-..+.+.|+.++|.+++++..+
T Consensus       165 ~M~~-------~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          165 HMVE-------SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHH-------TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHh-------cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            8876       12233456788999999999999999999988654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.70  E-value=8.7e-06  Score=67.73  Aligned_cols=212  Identities=12%  Similarity=0.077  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      .+...+|..|...|++++-..++..........   .....+.....+-..+.. -+..+.-.+.+..+++.++.    +
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence            467789999999999999888887765543221   122233344444444433 35556667778888877664    2


Q ss_pred             chHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          138 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       138 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ......  .-..+|..|...|+|.+|...+.+..+-+++.    ++...+..++.....+|...+++.++...+.++...
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            223323  34589999999999999999999999988763    456778888899999999999999999999999888


Q ss_pred             HHHhhCCCCcc-HHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcCh
Q 016124          216 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  286 (394)
Q Consensus       216 ~~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  286 (394)
                      .....  .+|. .+.....-|.++. ..++|.+|..+|-++...+...   ..|....+...++.+-...++.
T Consensus       169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred             hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence            76542  3443 3445556678888 8999999999999987655432   2233334444455555555553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.60  E-value=2e-07  Score=61.97  Aligned_cols=88  Identities=13%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh-hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      ...|..+...|++++|+..++++++.        .|.... ++..+|.++...|++++|+..|++++.+     .++++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence            45788899999999999999999886        455566 8999999999999999999999999987     233332


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                         ++.+        +.+.+++..|+++.....
T Consensus        71 ---~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           71 ---LQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             ---HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             ---HHHH--------HHHHHHHHHHHHHhccCc
Confidence               2211        556777777777766544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.60  E-value=6e-05  Score=62.76  Aligned_cols=212  Identities=10%  Similarity=0.016  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHhcCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-GRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      .+...+|..|...|++++-..++......+...   .....+.....+-..+... +..+.-++....+++..+.    +
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence            567899999999999999988887765544322   2234455555555555432 4445556666777666543    1


Q ss_pred             CcchHh--hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124           96 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus        96 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      ......  .-..+|..|...|+|.+|...+.+....+.+.  .+......++.....+|...+++.++...+.++.....
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence            222222  34489999999999999999999999887663  34567788888899999999999999999999988875


Q ss_pred             hcccCCCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHccc
Q 016124          174 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  243 (394)
                      ..   .+++...+.....-|..+. ..++|.+|..+|-++..-+...   ..|....+...++.+-...++
T Consensus       171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            42   2566667777777888888 8999999999999987554321   223333333334444444444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.57  E-value=0.0002  Score=62.67  Aligned_cols=213  Identities=10%  Similarity=0.049  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHH
Q 016124          117 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  196 (394)
Q Consensus       117 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~  196 (394)
                      +.....|++++...        |.....+...+..+...|+.++|...|++++.. ..       ...+.   ...+.. 
T Consensus       196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-------~~~l~---~~y~~~-  255 (493)
T 2uy1_A          196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-------GMFLS---LYYGLV-  255 (493)
T ss_dssp             HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-------SSHHH---HHHHHH-
T ss_pred             HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-------cHHHH---HHHHhh-
Confidence            45667888887652        223556777888889999999999999999986 32       11111   111111 


Q ss_pred             HHcCChHHHHHHHHHHHHHH---HHhhC--CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124          197 HIVGRGQEGRELLEECLLIT---EKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  271 (394)
Q Consensus       197 ~~~g~~~~A~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  271 (394)
                         .+.++.   ++......   ....+  ...+....++...+......++.+.|...|+++ .    .  +  +....
T Consensus       256 ---~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~--~~~~~  320 (493)
T 2uy1_A          256 ---MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--E--GVGPH  320 (493)
T ss_dssp             ---TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--S--CCCHH
T ss_pred             ---cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--C--CCChH
Confidence               111121   22222111   00000  011223355667777777888999999999988 3    1  1  12344


Q ss_pred             HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC
Q 016124          272 PMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE  350 (394)
Q Consensus       272 ~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~  350 (394)
                      .+...|.+-...+ +.+.|...|+.+++..     ++.|..   +...+......|+.+ .|...|+++.         .
T Consensus       321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~-~aR~l~er~~---------k  382 (493)
T 2uy1_A          321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEE-NARALFKRLE---------K  382 (493)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHH-HHHHHHHHSC---------C
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHH-HHHHHHHHHH---------H
Confidence            5555566666666 6999999999998853     444543   444566777888888 8888888762         1


Q ss_pred             CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          351 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       351 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      +   ...+......-...|+.+.+...+++++...
T Consensus       383 ~---~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~  414 (493)
T 2uy1_A          383 T---SRMWDSMIEYEFMVGSMELFRELVDQKMDAI  414 (493)
T ss_dssp             B---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            2   3445555566667799888888888888643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.55  E-value=2.4e-07  Score=61.50  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHH-HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      +..|..+...|++++|+..|++++...        |.... ++..+|.++...|++++|+..|++++.+        .|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            567899999999999999999999862        23345 7899999999999999999999999987        233


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  130 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  130 (394)
                      ...++..        +.+.++...|+++....
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccC
Confidence            3333321        56777788877776653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.54  E-value=1e-06  Score=58.94  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .-++.+|..++..|+|..|+.+|++|++....... ..+....++..+|.++...|++++|+.++++++.+        .
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            44689999999999999999999999987643211 12345678899999999999999999999999987        3


Q ss_pred             cchHhhhHhHH
Q 016124           97 ADLVLPLFSLG  107 (394)
Q Consensus        97 ~~~~~~~~~l~  107 (394)
                      |....+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            44444555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.47  E-value=2.2e-05  Score=64.29  Aligned_cols=133  Identities=12%  Similarity=0.046  Sum_probs=92.5

Q ss_pred             HHHHHHHHhh---hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhch----hHHHHHHHHHHHHHHHhc
Q 016124           20 LHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA----KKAVEIYHRVITILELNR   92 (394)
Q Consensus        20 ~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~al~~~~~~~   92 (394)
                      +..|..+...   .+..+|+.+|++++++        +|..+.++..++.++.....+    ........+++.....  
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--  269 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--  269 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--
Confidence            4455555544   4568999999999987        355555666666665432211    1222223333332211  


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ....+..+.++..++..+...|++++|+..+++++.+     .   +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n---~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----E---MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1234666778888898899999999999999999998     1   22 346788999999999999999999999996

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.44  E-value=4.9e-06  Score=55.58  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      .-++.+|..+...|+|..|+..+++|++.......   .......++..+|.++..+|++++|+.++++++.+       
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------   75 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------   75 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Confidence            45678999999999999999999999998754311   12233467789999999999999999999999886       


Q ss_pred             CCccHHHHHHHHH
Q 016124          223 EHPSFVTHLLNLA  235 (394)
Q Consensus       223 ~~~~~~~~~~~la  235 (394)
                       .|....+..+++
T Consensus        76 -~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 -DPEHQRANGNLK   87 (104)
T ss_dssp             -CTTCHHHHHHHH
T ss_pred             -CCCCHHHHhhHH
Confidence             344444555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.26  E-value=4e-05  Score=62.74  Aligned_cols=131  Identities=8%  Similarity=0.043  Sum_probs=91.4

Q ss_pred             HHHHHHHh---hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH----HHHHHHHHHHHHHHHHhhCC
Q 016124           64 MAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----VDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        64 l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~al~~~~~~~~~  136 (394)
                      .|..+...   ..+.+|+.+|++|+++        +|..+.++..++.+|.....+    .....-..+++.....  ..
T Consensus       202 ra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~~  271 (372)
T 3ly7_A          202 QAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LP  271 (372)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--CG
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--cc
Confidence            34444443   4568999999999997        677777887777777532111    1222223333332211  12


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ..+..+.++..++..+...|++++|+..+++++.+.       ++    ...+..+|.++...|++++|++.|.+|+.+
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            234455677778888888899999999999999972       22    335577899999999999999999999987

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.26  E-value=0.00073  Score=53.10  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHH
Q 016124          158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKEHPS-FVTHL  231 (394)
Q Consensus       158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~  231 (394)
                      ..+|...+++++++..       + ..-..++..+|.+|...     |+.++|..+|++++++        +|. ...++
T Consensus       179 l~~A~a~lerAleLDP-------~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~  242 (301)
T 3u64_A          179 VHAAVMMLERACDLWP-------S-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHHCT-------T-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHH
T ss_pred             HHHHHHHHHHHHHhCC-------C-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHH
Confidence            4678888888888632       2 22356788999999995     9999999999999997        343 36678


Q ss_pred             HHHHHHHHH-cccHHHHHHHHHHHHHH
Q 016124          232 LNLAASYSR-SKNFVEAERLLRICLDI  257 (394)
Q Consensus       232 ~~la~~~~~-~g~~~~A~~~~~~a~~~  257 (394)
                      ...|..+.. .|++++|..++++++..
T Consensus       243 v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            889999888 49999999999999983

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=5.2e-05  Score=59.48  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHH-----------hhchhHHHHHHHHHHHHHHHhcCCCCcc--hHhhhHhHHHHHHHh-----CcHH
Q 016124           56 LLVTSLLGMAKVLGS-----------IGRAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAV  117 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~  117 (394)
                      ..+..++..|.+...           .+....|...+++++++        +|.  ...++..+|.+|...     |+.+
T Consensus       150 ~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          150 VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred             cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence            345555665555432           12456777888888887        344  567999999999995     9999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 016124          118 DAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCA-NGNAEEAVELYKKALRVI  172 (394)
Q Consensus       118 ~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~  172 (394)
                      +|..+|++++++        +|. ...++...|..+.. .|++++|..++++++..-
T Consensus       222 kA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          222 KAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             HHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence            999999999998        332 24567788888887 599999999999999853

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.22  E-value=0.00012  Score=51.81  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      .++..-...+...|.|+.|+.....++.+..... ..-.+.....++..+|..++..|+|..|...|++++...+.....
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455666778899999999999999988875431 111355667788999999999999999999999999887632211


Q ss_pred             -----------------CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 016124          223 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  280 (394)
Q Consensus       223 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  280 (394)
                                       +.+....+.+.++.||...+++++|+..++..         +....+...-..||.+|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                             11233467889999999999999999987643         12233445555666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.21  E-value=1.8e-05  Score=51.31  Aligned_cols=67  Identities=16%  Similarity=0.015  Sum_probs=58.3

Q ss_pred             ccHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      |.....+..+|.++...++   .++|..++++++.+        +|....++..+|..++..|++++|+.+++++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556778888998876665   79999999999994        6788899999999999999999999999998874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.21  E-value=1.6e-05  Score=51.57  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             CcchHhhhHhHHHHHHHhCc---HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      .|..+..+..+|.+++..++   .++|...+++++.+        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35566788889999987766   79999999999997        5666778999999999999999999999999874

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.17  E-value=0.00011  Score=52.08  Aligned_cols=108  Identities=10%  Similarity=-0.019  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC--
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT--   94 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--   94 (394)
                      ++..-....+..|.|+.|+.....++.+.+..... .......++..+|..++..|+|..|...|++++...+.+...  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45566677888999999999999988886542221 123677889999999999999999999999999987643211  


Q ss_pred             ---------------CCcchHhhhHhHHHHHHHhCcHHHHHHHHHH
Q 016124           95 ---------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSR  125 (394)
Q Consensus        95 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  125 (394)
                                     +.+....+.+.++.||...+++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                           1122336778899999999999999988764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=6.5e-05  Score=52.85  Aligned_cols=69  Identities=20%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             ccHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      +....+.+++|+++.+.+   +.++++.+++..++.       +.| ....++++||..+.+.|+|++|..++++++++.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            346678899999999988   677999999998873       224 557899999999999999999999999999975

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.12  E-value=0.00022  Score=50.19  Aligned_cols=69  Identities=10%  Similarity=0.036  Sum_probs=59.0

Q ss_pred             cchHhhhHhHHHHHHHhC---cHHHHHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      +....+.+++|+++.+..   +.++++.+++..++.       +.| ....+++++|..+.+.|+|++|..++++++++-
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            356788999999999988   677999999988875       235 567889999999999999999999999999963

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.08  E-value=0.0021  Score=56.22  Aligned_cols=215  Identities=12%  Similarity=0.040  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHC
Q 016124           76 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  155 (394)
Q Consensus        76 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  155 (394)
                      .....|++++..        .|.....+...+..+...|+.++|...|++++.. .     .+...   +...+.. ...
T Consensus       197 Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-----~~~~l---~~~y~~~-~e~  258 (493)
T 2uy1_A          197 RMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-----DGMFL---SLYYGLV-MDE  258 (493)
T ss_dssp             HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-----CSSHH---HHHHHHH-TTC
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-----CcHHH---HHHHHhh-cch
Confidence            345567776654        2344677888899999999999999999999986 2     22222   1111111 111


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc---cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Q 016124          156 GNAEEAVELYKKALRVIKDSN---YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  232 (394)
Q Consensus       156 g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  232 (394)
                      +   +.   +++..+......   .....+.....++...+....+.+..+.|...|+++ ..        .+.....+.
T Consensus       259 ~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--------~~~~~~v~i  323 (493)
T 2uy1_A          259 E---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--------EGVGPHVFI  323 (493)
T ss_dssp             T---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------SCCCHHHHH
T ss_pred             h---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------CCCChHHHH
Confidence            1   11   222222110000   000012223456677777777888899999999988 21        112334555


Q ss_pred             HHHHHHHHcc-cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124          233 NLAASYSRSK-NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  311 (394)
Q Consensus       233 ~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  311 (394)
                      ..|.+....+ +++.|..+|+.++..+     ++.|   ..+...+......|+.+.|...|+++.         .+   
T Consensus       324 ~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR~l~er~~---------k~---  383 (493)
T 2uy1_A          324 YCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENARALFKRLE---------KT---  383 (493)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHSC---------CB---
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HH---
Confidence            5666666666 6999999999999842     2223   344556777788999999999998862         12   


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124          312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~  344 (394)
                      ...+......-...|+.+ .+...++++++...
T Consensus       384 ~~lw~~~~~fE~~~G~~~-~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          384 SRMWDSMIEYEFMVGSME-LFRELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhc
Confidence            234555566666779887 88888999987554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.012  Score=50.57  Aligned_cols=217  Identities=11%  Similarity=0.005  Sum_probs=131.4

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124           29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  108 (394)
Q Consensus        29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
                      .|+++.|++-+....+..+  .+.+.+....++..+..++...|+++...+++.-..    +..+. .+...........
T Consensus        29 ~~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls----kkr~q-lk~ai~~~V~~~~  101 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS----KKHGQ-LKLSIQYMIQKVM  101 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----TTTTT-SHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhhh-hHHHHHHHHHHHH
Confidence            4788888876644333222  234455566778888899999999988766554221    11111 1111111111111


Q ss_pred             HHH-HhCcHHHHHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124          109 LFI-KEGKAVDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  184 (394)
Q Consensus       109 ~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  184 (394)
                      -+. .....+.  ......+..........   ....+.....|+.++...|++.+|...+.....-..    ...+...
T Consensus       102 ~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----~~~~~~~  175 (445)
T 4b4t_P          102 EYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY----GSMEMSE  175 (445)
T ss_dssp             HHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----SSSCHHH
T ss_pred             HHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----hcccHHH
Confidence            111 1121111  11111221111111100   123456678899999999999999999998764332    2345566


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  260 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  260 (394)
                      ....+....+++...+++.+|...++++........  .+|. ....+...|.++...++|.+|..+|..+......
T Consensus       176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            777888899999999999999999998765433322  2333 3556678899999999999999999998875443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.024  Score=48.69  Aligned_cols=216  Identities=11%  Similarity=-0.064  Sum_probs=129.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH
Q 016124          114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  193 (394)
Q Consensus       114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la  193 (394)
                      |+++.|++.+.......+  .+.+.+....++..+..++...|+++...+++.-...   .   .+........+...+-
T Consensus        30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk---k---r~qlk~ai~~~V~~~~  101 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK---K---HGQLKLSIQYMIQKVM  101 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT---T---TTTSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---H---hhhhHHHHHHHHHHHH
Confidence            567788776543333222  2345566677788889999999999887766543221   1   1222222222211111


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhh-CCCC--ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-CCcc
Q 016124          194 ELLHIVGRGQEGRELLEECLLITEKYK-GKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSI  269 (394)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~  269 (394)
                      .........+..  .....+....... |.-.  ...+.....|+.++...|++.+|...+.....   +..+.. ....
T Consensus       102 ~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~k  176 (445)
T 4b4t_P          102 EYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEK  176 (445)
T ss_dssp             HHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHH
T ss_pred             HHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHH
Confidence            112222222221  1111221111111 1111  12455667899999999999999999987653   232222 2344


Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124          270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  345 (394)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~  345 (394)
                      ...+.....++...+++.+|...+.++.......  +.+|. ....+...|.++...+++. +|-.+|..+......
T Consensus       177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~-~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYL-EVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhcccc
Confidence            5667778899999999999999999986544332  33443 3455677899999999999 999999988876544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.42  E-value=0.0059  Score=42.41  Aligned_cols=110  Identities=10%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhch------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 016124            8 LKDDEPLLDAILLHMGSMYSTLENY------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY   81 (394)
Q Consensus         8 l~~~~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   81 (394)
                      +.+.+|+....|   .......|+.      ++-++.|++|+...+..........+..+...+.. ...++.++|...|
T Consensus         8 ~~p~~yd~W~~y---l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy   83 (161)
T 4h7y_A            8 MMANNPEDWLSL---LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF   83 (161)
T ss_dssp             --CCSHHHHHHH---HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred             eCCCCHHHHHHH---HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence            445566654443   4444455888      88888999888765332122233566666666655 5679999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           82 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      +.++.+        +...+.++...|..-.++|+...|...+.+++.+
T Consensus        84 ~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           84 QMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            999986        2234888999999999999999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.38  E-value=0.0013  Score=44.48  Aligned_cols=76  Identities=12%  Similarity=-0.034  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ...+.+++|+++.+..+..     ..++.+.+.+.++..+.| ...++++.||..+.+.|+|++|..+++..+++.|...
T Consensus        34 s~~~~F~yAw~Lv~S~~~~-----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYND-----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHH-----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            3467889999999877655     345666666666666656 7889999999999999999999999999999888665


Q ss_pred             Hh
Q 016124          390 QK  391 (394)
Q Consensus       390 ~~  391 (394)
                      |.
T Consensus       109 QA  110 (126)
T 1nzn_A          109 QA  110 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.29  E-value=0.0021  Score=44.62  Aligned_cols=116  Identities=7%  Similarity=-0.074  Sum_probs=80.9

Q ss_pred             CcchHHHHHHHHHHHhhcCh------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          267 QSISFPMLHLGITLYHLNRD------KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                      |.....+..........|+.      ++-++.|++|+..............+..+...+.. ...++.+ +|.+.|+.++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d-~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPD-DARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGG-GCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHH-HHHHHHHHHH
Confidence            34445666666677777888      77777777777643211111223345555566644 5668888 9999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhh
Q 016124          341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  392 (394)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  392 (394)
                      .+ -    ..   .+.++...|..-.++|+...|...+.+++.++++-.+++
T Consensus        88 ~~-h----Kk---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           88 AN-C----KK---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HH-C----TT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HH-h----HH---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            86 1    12   277888889999999999999999999998876554443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.24  E-value=0.0094  Score=40.33  Aligned_cols=68  Identities=18%  Similarity=0.084  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHHHcccHHH---HHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          226 SFVTHLLNLAASYSRSKNFVE---AERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ....+.+++|+++....+..+   ++.+++..+.       .+.| ....+++.||..+.+.|+|++|..+++..+++.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            455788899999998887766   6666665443       3334 567789999999999999999999999999865

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.013  Score=50.19  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=88.3

Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  176 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  176 (394)
                      .....++..+|..|...|++++|.+.|.++...+.     ........+..+..++...+++..+..++.++..+...  
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--  200 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--  200 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence            44567888999999999999999999999877542     23445677888888999999999999999999887654  


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                        ++++..........|.++...++|.+|...|-++...
T Consensus       201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              3455555556667788888999999999999877643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.076  Score=45.42  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..++..+|..|...|++++|.+.|.++.....     ........+..+..++...+++..+..++.++.......  ++
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~d  203 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--GD  203 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--CC
Confidence            34567899999999999999999999877542     234567788888999999999999999999998775542  23


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      ...........|.++...++|.+|...|..+....
T Consensus       204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            33334445566777888999999999998887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.68  E-value=0.043  Score=51.44  Aligned_cols=107  Identities=10%  Similarity=-0.070  Sum_probs=81.0

Q ss_pred             CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124          224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  303 (394)
Q Consensus       224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  303 (394)
                      ......+++.+...|++.|+.++|..+|........+-   -.| ...+|..|...|.+.|+.++|.++|++..+.    
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----  194 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----  194 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence            44556678899999999999999999998765432222   123 3468899999999999999999999987552    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124          304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  341 (394)
Q Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~  341 (394)
                        .-.| ...+|..+...+.+.|+..++|.+++++..+
T Consensus       195 --G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          195 --GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             --TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             --CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence              1223 3467888888999999864378888887764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.63  E-value=0.041  Score=51.55  Aligned_cols=103  Identities=11%  Similarity=-0.012  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124          185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  264 (394)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  264 (394)
                      ...+++.+-..|.+.|+.++|..++.+......+-.   .|+ ..+|+.|...|.+.|+.++|.++|++....      +
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G  195 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA------G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence            345678899999999999999999987654433222   233 457899999999999999999999988761      2


Q ss_pred             CCCcchHHHHHHHHHHHhhcCh-HHHHHHHHHHHH
Q 016124          265 DDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY  298 (394)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~  298 (394)
                      -.| ...+|..+-.++.+.|+. ++|.+++++..+
T Consensus       196 ~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          196 LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            233 456788888899999985 688888887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.51  E-value=0.0025  Score=43.28  Aligned_cols=73  Identities=11%  Similarity=-0.077  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          312 GEALDCLVSIQTRLGEDDT--KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ..+.+++|+++.+..+..+  +++.+++..+.       .+.....+.++.||..+.+.|+|++|..+.+..+++.|...
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            4678899999998876541  34444444433       23335688999999999999999999999999888877665


Q ss_pred             Hh
Q 016124          390 QK  391 (394)
Q Consensus       390 ~~  391 (394)
                      |.
T Consensus       113 QA  114 (134)
T 3o48_A          113 QV  114 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.37  E-value=0.086  Score=49.42  Aligned_cols=47  Identities=13%  Similarity=0.074  Sum_probs=34.1

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH
Q 016124           68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  127 (394)
Q Consensus        68 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  127 (394)
                      ....|++++|.+..+.             ......+..+|..+...|+++.|+.+|.++-
T Consensus       662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3456666666655321             1234678899999999999999999999863

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.36  E-value=0.006  Score=42.02  Aligned_cols=75  Identities=11%  Similarity=-0.074  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          310 PVGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       310 ~~~~~~~~l~~~~~~~g~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      ....+.+++|+++.+..+..  .+++.+++..+.       .......+.++.||..+.+.|+|++|..+.+..+++.|.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            34567889999999888654  144444444443       222256788999999999999999999999998887776


Q ss_pred             HHHh
Q 016124          388 YKQK  391 (394)
Q Consensus       388 ~~~~  391 (394)
                      ..|.
T Consensus       110 n~QA  113 (144)
T 1y8m_A          110 NKQV  113 (144)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            5553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.32  E-value=0.08  Score=49.63  Aligned_cols=75  Identities=21%  Similarity=0.120  Sum_probs=52.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  225 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  225 (394)
                      ..+...+...|.+++|+...+.              +..       ........|++++|.+..+.             .
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~--------------~~~-------~f~~~l~~~~~~~A~~~~~~-------------~  678 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD--------------QDQ-------KFELALKVGQLTLARDLLTD-------------E  678 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC--------------HHH-------HHHHHHHHTCHHHHHHHHTT-------------C
T ss_pred             HHHHHHHHhCCChHHheecCCC--------------cch-------heehhhhcCCHHHHHHHHHh-------------h
Confidence            4556667788888887765422              111       12234678899988877532             1


Q ss_pred             cHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124          226 SFVTHLLNLAASYSRSKNFVEAERLLRIC  254 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  254 (394)
                      .....+..+|..+...|+++.|+.+|.++
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            23357889999999999999999999876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.91  E-value=0.26  Score=41.47  Aligned_cols=109  Identities=11%  Similarity=0.019  Sum_probs=80.7

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch--------------HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124           21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus        21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .-|......|+.+.|...+.+|+.++...+-.+.              .....+...++..+...|++.+++..+.+++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344445568899999999999987643211111              12334555677888899999999999998877


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      .        +|..-..+..+..++...|+..+|+..|++.......-+|-+
T Consensus       200 ~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          200 E--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             H--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            5        555666888899999999999999999999998877665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.82  E-value=0.25  Score=41.61  Aligned_cols=107  Identities=12%  Similarity=-0.097  Sum_probs=77.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCC---Cc-----------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124          194 ELLHIVGRGQEGRELLEECLLITEKYKGKE---HP-----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  259 (394)
                      ......|+.+.|...+.+++.++...+-++   .+           ....+...++..+...|++.+++..+...+..  
T Consensus       123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--  200 (388)
T 2ff4_A          123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--  200 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            333456777788888888777653211000   01           11234456678888999999999999988773  


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                            +|..-..+..+..++...|+..+|+..|++......+.+|.+.
T Consensus       201 ------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          201 ------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             ------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                  5666778889999999999999999999999998877777554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.54  Score=43.06  Aligned_cols=124  Identities=9%  Similarity=-0.045  Sum_probs=80.0

Q ss_pred             HCCC-HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH--HHHc-CChHHHHHHHHHHHHHHHHhhCC---CC--
Q 016124          154 ANGN-AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIV-GRGQEGRELLEECLLITEKYKGK---EH--  224 (394)
Q Consensus       154 ~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~-g~~~~A~~~~~~a~~~~~~~~~~---~~--  224 (394)
                      ..++ ++.|+.++++.....       +....    +...+.+  .... .+--+|+..+.++++........   .+  
T Consensus       260 ~t~~~~~~a~~~le~L~~~~-------p~~~~----~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKD-------PIHDI----YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHC-------GGGHH----HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             ccccHHHHHHHHHHHHHhhC-------CchhH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            3455 577888888866532       21111    1111221  1122 23446778887777543222111   11  


Q ss_pred             -----ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          225 -----PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       225 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                           +.....+..-+..+...|+++-|+.+.++++..        .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                 112234555678888999999999999999985        5777889999999999999999999877665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.62  E-value=0.33  Score=33.54  Aligned_cols=68  Identities=15%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             cHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          226 SFVTHLLNLAASYSRSKNFV---EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       226 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ....+.+++|+++....+..   +++.+++..+.       ........+++.||..+.+.|+|++|..+.+..+++.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            45667889999998877554   56677766655       1222567789999999999999999999999998854

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.46  E-value=0.36  Score=32.88  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=50.8

Q ss_pred             hHhhhHhHHHHHHHhCcHH---HHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAV---DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ...+.+++|+++.+..+..   +++.+++..+..       +.......++.+|..+.+.|+|++|..+.+..+++
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4577888999998887653   456666554432       23356778999999999999999999999999885

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.29  Score=42.24  Aligned_cols=145  Identities=11%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             HHHhhhchHHHHHHHHHHH--HHHHHHh-CCchHHHHHHHHHHHHHHHHhhchhHHHHHH-------HHHHHHHHHh-cC
Q 016124           25 MYSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIY-------HRVITILELN-RG   93 (394)
Q Consensus        25 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~   93 (394)
                      .+...+++++|..+-...+  +...... ..-++..+.+|+..+.++...|+........       ...+...+.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            4557788999888877665  2222110 0112345666777777777777665533221       1222222222 22


Q ss_pred             CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           94 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      .+....+..++.+-..|...+.+++|..+..++.  +... ...+...+..++.+|.++..+++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3455567778888999999999999999998874  1110 01234567778899999999999999999999998754

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.98  E-value=1.2  Score=36.19  Aligned_cols=212  Identities=11%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhhCCCC
Q 016124          146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEH  224 (394)
Q Consensus       146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~  224 (394)
                      ..-+..+.+.|++..|.++..-.++.+.+.. ...+..    ....+..++.....-+ .=..+.++++....+. |...
T Consensus        59 ~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~----~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~  132 (336)
T 3lpz_A           59 ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGA----SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYP  132 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHH----HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCT
T ss_pred             HHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCC
Confidence            3334445555666666666555555554431 111211    2233444444433211 2245667777766653 3223


Q ss_pred             ccHHHHHHHHHHHHHHcccHHHHHHHHH--------HHHHHHHhhcCCCCCcchHHHHH-HHHHHHhhcChHHHHHHHHH
Q 016124          225 PSFVTHLLNLAASYSRSKNFVEAERLLR--------ICLDIMTKTVGPDDQSISFPMLH-LGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~  295 (394)
                      ......+..+|..|.+.+++.+|..+|-        ...++.-+......+.....+.. ....|...++...|...+..
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~  212 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI  212 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3344567789999999999999988862        11122222222222333333333 33456788999999988877


Q ss_pred             HHHHHHHHcC-----------------CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 016124          296 ALYIREIAFG-----------------KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL  358 (394)
Q Consensus       296 a~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  358 (394)
                      ..+...+...                 +..|.. . ...+...-...+     +...|+...+.+...+..+.|.....+
T Consensus       213 f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL-N-Fl~lLllt~q~~-----~~~lF~~L~~~Y~~~l~rd~~~~~~~L  285 (336)
T 3lpz_A          213 FTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL-N-FISMLLLSVQKG-----SPDLFRQLKSKYEANLNELNGIWDTAL  285 (336)
T ss_dssp             HHHHHHHHCTTSCCEESCC--CCCEECTTCHHH-H-HHHHHHHHHHSC-----CHHHHHHHHHHTHHHHHTTTTTTHHHH
T ss_pred             HHHHHhhcCCCccccccccCCcccccCCCCchH-H-HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence            7665533211                 112211 1 111222222333     234666666665555544432567788


Q ss_pred             HHHHHHHHHhcC
Q 016124          359 KKVVSYLDKLGR  370 (394)
Q Consensus       359 ~~la~~~~~~g~  370 (394)
                      ..+|..|.....
T Consensus       286 ~~IG~~YFgi~~  297 (336)
T 3lpz_A          286 ELIAEMYFGIQR  297 (336)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCC
Confidence            889999987643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.52  Score=34.12  Aligned_cols=101  Identities=13%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016124           68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  147 (394)
Q Consensus        68 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  147 (394)
                      ....|+++.|.+..+..             +....|..||......|+++-|+.+|.++-+.                ..
T Consensus        15 AL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~   65 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DK   65 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HH
T ss_pred             HHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HH
Confidence            34678888888775532             12457888999999999999999999876432                23


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                      +..+|...|+.+.-....+.+...        .+.       +.-..++...|+++++++++.+.
T Consensus        66 L~~Ly~~tg~~e~L~kla~iA~~~--------g~~-------n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           66 LSFLYLVTGDVNKLSKMQNIAQTR--------EDF-------GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT--------TCH-------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHC--------ccH-------HHHHHHHHHcCCHHHHHHHHHHC
Confidence            445566667765544333333221        111       22234566788888888887653

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=94.73  E-value=0.98  Score=34.07  Aligned_cols=60  Identities=8%  Similarity=0.011  Sum_probs=50.3

Q ss_pred             cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH-hhcChHHHHHHHHHHHHHH
Q 016124          241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       241 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~  300 (394)
                      .|+.+.|...|+.|.++....+++.||.......+.+..|. -.+++++|..+.++|+++.
T Consensus       138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            46678999999999999988788889988777777777665 4799999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.51  E-value=0.28  Score=42.53  Aligned_cols=63  Identities=13%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      .++..+|.+......+..|..+|.+|..+        .|..+..++.||.+....|+.-+|.-+|.+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46677888888889999999999999987        6778899999999999999999999999998753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.49  E-value=4  Score=40.02  Aligned_cols=208  Identities=11%  Similarity=-0.026  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-------------CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  211 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (394)
                      .+.+|.++...|++++|..+|+++-.-.......             .+........|..+..++...|.++.+++..+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4779999999999999999998863221110000             000111223466778889999999999999999


Q ss_pred             HHHHHHHhhCCCCccH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124          212 CLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  290 (394)
Q Consensus       212 a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (394)
                      |++..    +.+++.. ...+.++=..+...|+|++|...+...-.         ......++..|....+..|+.+.=.
T Consensus       925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence            98752    2233332 23567777888999999999877643321         2233455666666666665544332


Q ss_pred             H--------HHHHHHHHHH-HH-cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCC---HHHHHH
Q 016124          291 K--------LVLEALYIRE-IA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVMLT  357 (394)
Q Consensus       291 ~--------~~~~a~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~  357 (394)
                      .        ..+..+.... .. .....|..   +..|-..+...|++...|..+|+++..+....-....   .....+
T Consensus       992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Y---y~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~ 1068 (1139)
T 4fhn_B          992 NYSMPTLRQDVDNLLERKAFQMINVESQPCW---YNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEH 1068 (1139)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHhCCccccCCCH---HHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHH
Confidence            2        1122222111 11 01222332   3445556677888887888899998877653211111   123345


Q ss_pred             HHHHHHHHHHh
Q 016124          358 LKKVVSYLDKL  368 (394)
Q Consensus       358 ~~~la~~~~~~  368 (394)
                      +..+..++.--
T Consensus      1069 yL~~INaLslv 1079 (1139)
T 4fhn_B         1069 YLIVLNTLELL 1079 (1139)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhcC
Confidence            55555555544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.14  Score=44.08  Aligned_cols=143  Identities=11%  Similarity=0.064  Sum_probs=62.1

Q ss_pred             HHHhhchhHHHHHHHHHH--HHHHHhc-CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHH-------HHHHHHHHh-hCC
Q 016124           68 LGSIGRAKKAVEIYHRVI--TILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFS-------RILKIYTKV-YGE  136 (394)
Q Consensus        68 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~al~~~~~~-~~~  136 (394)
                      +...+++++|..+-...+  ....... ..-+...+.+|+..+.++...|+.........       ..+..++.. +..
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            456678888888776554  2222111 01134456677777788877787765432211       122222222 223


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      +....+..++.+-..|...+.+++|..+..++.  +..   ........+..++.+|.++..+++|.+|.+++..|+..
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            445567778889999999999999999998874  111   11244556777889999999999999999999988753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.04  E-value=1.2  Score=32.28  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      ....|+++.|.+..+..            +.   ...|..+|......|+++-|+.+|.++-.                +
T Consensus        15 AL~lg~l~~A~e~a~~l------------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------------ND---SITWERLIQEALAQGNASLAEMIYQTQHS----------------F   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------H
T ss_pred             HHhcCCHHHHHHHHHHh------------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------H
Confidence            35789999998876543            11   23567899999999999999999887532                2


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  296 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (394)
                      ..+..+|...|+.+.-....+.+..       ...      +..-..++...|+++++++.|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~-------~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQT-------RED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH-------TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH-------Ccc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            2344556667776554444333322       111      122234567788988888888654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.93  E-value=2  Score=34.54  Aligned_cols=172  Identities=10%  Similarity=-0.056  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      ..+..+..=|..++++++|++++....                        ..+.+.|++..|.++..-.++...+..  
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga------------------------~~ll~~~Q~~sa~DLa~llvev~~~~~--   87 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQGA------------------------LSFLKAKQGGSGTDLIFYLLEVYDLAE--   87 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH------------------------HHHHHCCCcchHHHHHHHHHHHHHHcC--
Confidence            344555555666667766666654433                        334444555555555444444444432  


Q ss_pred             CCccHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH------
Q 016124          223 EHPSFVTHLLNLAASYSRSKNFV-EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE------  295 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------  295 (394)
                       .+........+..++.....-+ .=..+.++++....+. +.........+..+|..+...|++.+|..+|--      
T Consensus        88 -~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~  165 (312)
T 2wpv_A           88 -VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSM  165 (312)
T ss_dssp             -CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccH
Confidence             1112223334444443322111 1245566666644443 222334567788899999999999999987742      


Q ss_pred             --HHHHHHHHcCC---CChhHHHHHHHHHH-HHHHhCCCchHHHHHHHHHHHHH
Q 016124          296 --ALYIREIAFGK---DSLPVGEALDCLVS-IQTRLGEDDTKLLELLKRVLRIQ  343 (394)
Q Consensus       296 --a~~~~~~~~~~---~~~~~~~~~~~l~~-~~~~~g~~~~~A~~~~~~al~~~  343 (394)
                        ...+.-+....   +.|.....+..-+. .|...|+.. .|...+....+..
T Consensus       166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~-~A~~~~~~f~~~~  218 (312)
T 2wpv_A          166 IKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNIS-FAHESKDIFLERF  218 (312)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHH
Confidence              11111111111   33444444433333 356778877 8888877766544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.58  E-value=1  Score=39.16  Aligned_cols=63  Identities=10%  Similarity=0.065  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                      ..++..+|.+......++.|..+|.+|..+        .|..+..++.||.+....|+.-+|.-+|.+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            456788999999999999999999999986        577888999999999999999999998888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.44  E-value=2.1  Score=30.55  Aligned_cols=98  Identities=16%  Similarity=0.088  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH---------
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT---------  131 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------  131 (394)
                      -..++.+++..|.|..++-++.             ....+.+.+.-+.||....+|..|+..++..+.---         
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~  102 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR  102 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence            3456778888999988876543             223455666678899999999999999998873100         


Q ss_pred             -HhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          132 -KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       132 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                       ..+--+..+.-..+..+|.++...|+-++|+.++......
T Consensus       103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence             0000111222335778999999999999999999988764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.11  E-value=3.1  Score=29.73  Aligned_cols=97  Identities=14%  Similarity=0.035  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----------
Q 016124          190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT----------  259 (394)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----------  259 (394)
                      ..++.++.-.|.+..++-++..             ..++.+.+.-+.+|....++..|+..++..+.---          
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            3467788889999888776542             23455666678899999999999999998873100          


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124          260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  299 (394)
Q Consensus       260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  299 (394)
                      +..--+..+--..+..+|.++...|+.++|+.++......
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            0111111223345677899999999999999999887654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.88  E-value=5.6  Score=32.31  Aligned_cols=244  Identities=7%  Similarity=-0.051  Sum_probs=134.3

Q ss_pred             HHhhhch---HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           26 YSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        26 ~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      -...|+|   =+|-+.++......-+  ........+.++.-+..+...|++..|.++..-.++.+.+..-+   .....
T Consensus        22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~--~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~~~~~   96 (336)
T 3lpz_A           22 RIAEGQPEEQYEAAQETRLVAARYSK--QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---VDGAS   96 (336)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCHHH
T ss_pred             HHhCCCCccccHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHH
Confidence            4456777   6666666665544433  33445566667777777777888888877777777776664321   11234


Q ss_pred             hHhHHHHHHHhCcH-HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH------------HH
Q 016124          103 LFSLGSLFIKEGKA-VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK------------AL  169 (394)
Q Consensus       103 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------a~  169 (394)
                      ...+..++.....- ..=..+..+++....+. +............+|..|...+++.+|..+|--            ..
T Consensus        97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~  175 (336)
T 3lpz_A           97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY  175 (336)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence            44555555444321 12255777788777663 322222334567789999999999999887621            11


Q ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC--------C------CccHHH-HHHHH
Q 016124          170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK--------E------HPSFVT-HLLNL  234 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------~------~~~~~~-~~~~l  234 (394)
                      +...+.   ++....+  ........|...++...|...+..-.+...+....        .      .|.... -+..+
T Consensus       176 ew~~~~---~~~e~dl--fiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~l  250 (336)
T 3lpz_A          176 EWYKQD---ESHTAPL--YCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISM  250 (336)
T ss_dssp             HHHHTS---CGGGHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHH
T ss_pred             HHHHhc---CCccHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHH
Confidence            122211   1111111  11223345778899999988877766654332110        0      111111 11222


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124          235 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  284 (394)
Q Consensus       235 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  284 (394)
                      ...-+..+.    ...|....+.+...+..+.+.....+..+|..|+...
T Consensus       251 Lllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          251 LLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             HHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            223344443    3456655555555544443366777788888888654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.94  E-value=7  Score=30.52  Aligned_cols=122  Identities=15%  Similarity=0.077  Sum_probs=75.4

Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124          238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  317 (394)
Q Consensus       238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  317 (394)
                      ..+.|+.++|+...+..++        ..|........+..+++-.|+|+.|...++.+.++.     +.....+..|..
T Consensus         7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~   73 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRH   73 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHH
Confidence            4677899999999888877        568888888999999999999999999998877754     222222222322


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124          318 LVSIQTRLGEDDTKLLELLKRVLR--IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  385 (394)
Q Consensus       318 l~~~~~~~g~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  385 (394)
                      +..+-..           =.+.+.  .....++. .+. ......-+......|+.++|.++-.++.+..
T Consensus        74 lI~aE~~-----------R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           74 LVKAAQA-----------RKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR  130 (273)
T ss_dssp             HHHHHHH-----------HHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-----------HHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence            2211110           001110  00111222 222 2233334555667799999999988887654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.84  E-value=14  Score=34.01  Aligned_cols=88  Identities=11%  Similarity=-0.002  Sum_probs=62.9

Q ss_pred             chhHHHHHHHHHHHHHHHhcCC---CC-------cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124           73 RAKKAVEIYHRVITILELNRGT---ES-------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  142 (394)
Q Consensus        73 ~~~~A~~~~~~al~~~~~~~~~---~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  142 (394)
                      +--+|+....++++........   .+       +.....+..-+..+...|+++-|+.+.++|...        .|...
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF  371 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSF  371 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------Cchhh
Confidence            3456777777776543221110   11       112335556678888999999999999999987        45566


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKA  168 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a  168 (394)
                      .+|..|+.+|..+|+|+.|+-.+..+
T Consensus       372 ~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          372 ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            78999999999999999999777654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.52  E-value=20  Score=35.24  Aligned_cols=184  Identities=10%  Similarity=0.030  Sum_probs=106.4

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH-------------Hhh--CCCchHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYT-------------KVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY  165 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  165 (394)
                      ...+.+|.++...|++++|..+|+++-.-..             ...  ..........|..+..++...|.++.++++.
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3457899999999999999999988632110             000  0001112345777888999999999999999


Q ss_pred             HHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHH
Q 016124          166 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  245 (394)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  245 (394)
                      +.|++...     ..++......+.++=..+...|+|++|...+...-         +......++..+....+..|..+
T Consensus       923 ~lAi~~~~-----~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p---------d~~~r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          923 LLADASKE-----TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS---------TTPLKKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHCC-----SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH---------HSSSCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHhcc-----CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHhCCChh
Confidence            99998642     22333344467778888999999999987764321         11122344555555555555443


Q ss_pred             HHHHH--------HHHHHHHH-Hhh-cCCCCCcchHHHHHHHHHHHhhcChHHHH-HHHHHHHHHHH
Q 016124          246 EAERL--------LRICLDIM-TKT-VGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEALYIRE  301 (394)
Q Consensus       246 ~A~~~--------~~~a~~~~-~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~  301 (394)
                      .=..+        .+..+.-. +.. .....|   ..+..|=..+...|++..|. .+|+.+.++..
T Consensus       989 ~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p---~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B          989 QLLNYSMPTLRQDVDNLLERKAFQMINVESQP---CWYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             hhhCCCCccHHHHHHHHHHHHHHhCCccccCC---CHHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence            33211        11122111 111 001112   22333444566778887654 46677666544

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.38  E-value=12  Score=31.43  Aligned_cols=131  Identities=11%  Similarity=-0.094  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC---------CCCcchHHHH
Q 016124          204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP---------DDQSISFPML  274 (394)
Q Consensus       204 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~  274 (394)
                      .-+.+|+..+.-+....   +|-.  ....+..+.....+.++|.+++++......+....         .......+..
T Consensus        57 ~~~~ly~~fi~~f~~ki---n~L~--lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~  131 (393)
T 4b4t_O           57 LRLRLYDNFVSKFYDKI---NQLS--VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS  131 (393)
T ss_dssp             CCHHHHHHHHHHHHHHS---CSHH--HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc---CHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence            33456666665554433   1211  11113345566778999999988765433322211         1123345566


Q ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124          275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  340 (394)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al  340 (394)
                      .++..|...|+.++|..+++++-.......+.+..-....+...+..+...+++. .+....-..+
T Consensus       132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a-~~y~~~l~~l  196 (393)
T 4b4t_O          132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFN-SFYYTSLLYL  196 (393)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Confidence            7889999999999999999999888776544333344555555667777777665 4443333333

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=86.20  E-value=10  Score=29.47  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHhh--CCCCccHHHH
Q 016124          163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------GQEGRELLEECLLITEKYK--GKEHPSFVTH  230 (394)
Q Consensus       163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~  230 (394)
                      ..+..++.+.....-+....+.....+-..|..|.-.-.          .+.|...|++|.++.....  ++.||-....
T Consensus       119 ~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGL  198 (268)
T 3efz_A          119 LESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLAT  198 (268)
T ss_dssp             HHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence            344555555544311112222223333445666654322          3678899999999998777  7888887777


Q ss_pred             HHHHHHHHH-HcccHHHHHHHHHHHHHH
Q 016124          231 LLNLAASYS-RSKNFVEAERLLRICLDI  257 (394)
Q Consensus       231 ~~~la~~~~-~~g~~~~A~~~~~~a~~~  257 (394)
                      ..|.+..|. -.+++++|..+.+++.+-
T Consensus       199 aLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          199 ILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            777777766 579999999999998874

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.64  E-value=15  Score=30.85  Aligned_cols=136  Identities=7%  Similarity=0.022  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC---------CCcchHhhh
Q 016124           33 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT---------ESADLVLPL  103 (394)
Q Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~  103 (394)
                      +.-+.+|...+.-+.....+  -..+.   .+..+.....+.++|.+++++...........         .......+.
T Consensus        56 ~~~~~ly~~fi~~f~~kin~--L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~  130 (393)
T 4b4t_O           56 PLRLRLYDNFVSKFYDKINQ--LSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLID  130 (393)
T ss_dssp             CCCHHHHHHHHHHHHHHSCS--HHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCH--HHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHH
Confidence            33456666666655443221  11111   12334456678889998888765443332211         112234556


Q ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      ..++..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-..+....
T Consensus       131 ~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          131 SEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            6788999999999999999999988877654444445566667778888899999988877777776554

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=83.90  E-value=13  Score=28.82  Aligned_cols=55  Identities=16%  Similarity=0.092  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHH
Q 016124          203 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDI  257 (394)
Q Consensus       203 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~  257 (394)
                      +.|...|++|..+......+.||.......+.+..|.. .+++++|..+.+++++-
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            57888999999999888888899877777777776665 69999999988887763

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.38  E-value=4.9  Score=25.06  Aligned_cols=38  Identities=11%  Similarity=0.053  Sum_probs=31.6

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR   49 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   49 (394)
                      +-+.+..+...+..+...|+|++|+++.+++.......
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA   48 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   48 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            44567778899999999999999999999998766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 21  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80
           ++G +++       ++  +++ + +  +         + + + +  VL       +AV  
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPN--------FLDAYINLGNVLKEARIFDRAVAA 225

Query: 81  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140
           Y R +++        S +  +   +L  ++ ++G    A   + R +++           
Sbjct: 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPH 269

Query: 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 200
              A C+LA+A    G+  EA + Y  ALR                +   +LA +    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR----------LCPTHADSLNNLANIKREQG 319

Query: 201 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260
             +E   L  + L +         P F     NLA+   +     EA    +  + I   
Sbjct: 320 NIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 368

Query: 261 TVGPDDQSISFPMLHLGITLYHLN 284
                  + +    ++G TL  + 
Sbjct: 369 -----SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 42/236 (17%)

Query: 64  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 123
           +  V  + G    A+  + + +T+          + +    +LG++  +      A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 124 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 183
            R L +             +   +LA      G  + A++ Y++A+ +            
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------- 270

Query: 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 243
              +   +LA  L   G   E  +     L        +  P+    L NLA       N
Sbjct: 271 --PDAYCNLANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGN 320

Query: 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299
             EA RL R  L++      P+  +      +L   L    + +EA     EA+ I
Sbjct: 321 IEEAVRLYRKALEVF-----PEFAAA---HSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 18  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 77
           +  ++  +Y      + ++  Y+R I +              +   +A  L   G   +A
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEA 290

Query: 78  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
            + Y+  + +   +  +          +L ++  ++G   +A  ++ + L+++ +     
Sbjct: 291 EDCYNTALRLCPTHADSL--------NNLANIKREQGNIEEAVRLYRKALEVFPEFA--- 339

Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170
                 A  +LA      G  +EA+  YK+A+R
Sbjct: 340 -----AAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 35/230 (15%), Positives = 63/230 (27%), Gaps = 43/230 (18%)

Query: 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 203
           A  +L     A G    A+  ++KA+ +  +            +  I+L  +L       
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYINLGNVLKEARIFD 220

Query: 204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 263
                                P+      NLA  Y        A    R  +++      
Sbjct: 221 RAVAAYLRA--------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------ 266

Query: 264 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 323
                      +L   L       EAE     AL +                + L +I+ 
Sbjct: 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--------NNLANIKR 316

Query: 324 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373
             G  + + + L ++ L +       E       L  V   L + G+ +E
Sbjct: 317 EQGNIE-EAVRLYRKALEVFP-----EFAAAHSNLASV---LQQQGKLQE 357

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
              L     + G    AE    ++ +      G         +  L+         + + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSA 53

Query: 163 ELYKKALR 170
                A++
Sbjct: 54  HFSTLAIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290
            + LA    ++ +F  AER              PD+  +   +L L    +   R   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQE-----PDNTGV---LLLLSSIHFQCRRLDRSA 53

Query: 291 KLVLEALYI 299
                A+  
Sbjct: 54  HFSTLAIKQ 62

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 39/333 (11%), Positives = 89/333 (26%), Gaps = 50/333 (15%)

Query: 9   KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 68
                        +G +        +S+ + Q+   +          L          +L
Sbjct: 44  PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE--IL 101

Query: 69  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128
            + G  + A E   +   ++      +       +     L     +  +AE+     ++
Sbjct: 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161

Query: 129 IYTKVY--------------------------------------GENDGRVGMAMCSLAH 150
           + +                                           +   +  A      
Sbjct: 162 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221

Query: 151 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 210
                G+   A    +   +    +N+       ++    ++A    ++G  +    +LE
Sbjct: 222 YWQMTGDKAAAANWLRHTAKPEFANNH------FLQGQWRNIARAQILLGEFEPAEIVLE 275

Query: 211 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 270
           E          +       +LL L   Y ++    +A+R+L   L +  +T       I 
Sbjct: 276 ELNEN--ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333

Query: 271 FP-MLHLGITLYHLNRDKEAEKLVLEALYIREI 302
              M      L  LN   E E+   + + +REI
Sbjct: 334 GEAMAQQLRQLIQLNTLPELEQHRAQRI-LREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 7/138 (5%)

Query: 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 207
            A     +GN +EA  L K AL  +    + S   +        L E+LH  G       
Sbjct: 18  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS-----VLGEVLHCKGELTRSLA 72

Query: 208 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 267
           L+++   +    +       +  L+  +           A         ++ +       
Sbjct: 73  LMQQTEQMA--RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130

Query: 268 SISFPMLHLGITLYHLNR 285
              F +      L+   R
Sbjct: 131 MHEFLVRIRAQLLWAWAR 148

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 14/167 (8%), Positives = 41/167 (24%), Gaps = 5/167 (2%)

Query: 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 240
           +D++        A++    G   E   L +  L   E+       S +     L      
Sbjct: 7   EDTMHAEFNALRAQVAINDGNPDEAERLAKLAL---EELPPGWFYSRIVATSVLGEVLHC 63

Query: 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300
                 +  L++    +  +          + ++     L+     + A +   +A  + 
Sbjct: 64  KGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121

Query: 301 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 347
                +        +     +       D         +  +   + 
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 45/280 (16%)

Query: 15  LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 74
             A         +     E +   Y +++  L + +    +        +  +       
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHT 136

Query: 75  KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134
              V+      +                L  LG +     +   AES +    ++     
Sbjct: 137 SAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181

Query: 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194
                  G     LA    + G+    +  Y +++ V           +   N++     
Sbjct: 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQK---- 228

Query: 195 LLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 253
                         L + L   ++ K K     F+   +        SK+  +   L   
Sbjct: 229 -------------ALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 254 CLDIMTKTV--GPDDQSISFPMLHLGITLYHLNRDKEAEK 291
             +   + +     +      +  + +   H  RD   E 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 8   LKDDEPLLDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 66
            +++ PL D       G       +   ++L+++  +   + ++       + +   +  
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKH-------MEAWQYLGT 61

Query: 67  VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 126
                 +   A+    R + +   N+    A  V            E          +  
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121

Query: 127 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-- 184
             +     G     +G +   L      +    E  EL+  A+R+   S    +   +  
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 185 -----------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 227
                              ++R +   L + +G         EE +    +   +  P +
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGY 239

Query: 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP---MLHLGITLYHLN 284
           +    NL  S        EA       L++  K+ GP  +  +        L + L  L 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 285 RDKEAEKLVLEALYIREIAFG 305
           +           L      FG
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162
           L++ G L   +     A   FS +   ++++             ++        N  EA 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-----------FNIGCMYTILKNMTEAE 56

Query: 163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222
           + + +++   K          ++          +  +   +E    L    LI  K  G 
Sbjct: 57  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL---KEALIQLRGNQLIDYKILGL 113

Query: 223 EHPSFVTHLL-NLAASYSRSKNFVEAERLLRICLDI 257
           +   F   +L N+A  Y++ + + +AE  L +   +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 20/134 (14%)

Query: 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI--------MENMRID---- 191
           A  +      A G  E+A      ALR  +      L D          +   ++     
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72

Query: 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251
            AE     GR       LE            EHP        L  +Y  S    +A    
Sbjct: 73  KAEAEIACGRASAVIAELEALT--------FEHPYREPLWTQLITAYYLSDRQSDALGAY 124

Query: 252 RICLDIMTKTVGPD 265
           R     +   +G D
Sbjct: 125 RRVKTTLADDLGID 138

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 213
           + G  ++A+EL  +A++        SL        R    ELL I G  +   E L + +
Sbjct: 8   SEGQLQQALELLIEAIK--ASPKDASL--------RSSFIELLCIDGDFERADEQLMQSI 57

Query: 214 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 273
                   K  P ++     L      ++   +  +                +       
Sbjct: 58  --------KLFPEYLPGASQLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKS 102

Query: 274 LHLGITLYHLNRDKEAEKLVLEALYIR 300
           L            ++  +L L+   +R
Sbjct: 103 LVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.45
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.43
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.35
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.28
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.18
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.89
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.66
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.11
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.77
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.95
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.96
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	91.34
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	91.01
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.6
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	88.9
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	87.04
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	85.09
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	83.59
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	82.33
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	80.42

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-32  Score=232.49  Aligned_cols=311  Identities=16%  Similarity=0.161  Sum_probs=260.6

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124           20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL   99 (394)
Q Consensus        20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   99 (394)
                      ..+|..++..|++++|+..|+++++.        +|....++..+|.++...|++++|+..++++++.        +|..
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~   66 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL   66 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            45889999999999999999999875        2344567889999999999999999999999987        5667


Q ss_pred             HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh-----------------------------hC---------------
Q 016124          100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-----------------------------YG---------------  135 (394)
Q Consensus       100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------~~---------------  135 (394)
                      ..++..+|.++...|++++|+..+..+.......                             ..               
T Consensus        67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (388)
T d1w3ba_          67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999998876542100                             00               


Q ss_pred             ----------------CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc
Q 016124          136 ----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV  199 (394)
Q Consensus       136 ----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  199 (394)
                                      ...|....++..+|..+...|++++|...+++++++.       |+.   ..++..+|.++...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~l~~~~~~~  216 (388)
T d1w3ba_         147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNF---LDAYINLGNVLKEA  216 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHTT
T ss_pred             ccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------ccc---HHHHHHHhhhhhcc
Confidence                            0012234567888999999999999999999999863       222   34568899999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 016124          200 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  279 (394)
Q Consensus       200 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  279 (394)
                      |++++|+..++++...        .+.....+..+|.++...|++++|+..|++++++        .|....++..+|.+
T Consensus       217 ~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~  280 (388)
T d1w3ba_         217 RIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANA  280 (388)
T ss_dssp             TCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            9999999999998775        3455677889999999999999999999999883        56778899999999


Q ss_pred             HHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 016124          280 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  359 (394)
Q Consensus       280 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  359 (394)
                      +...|++++|+..+++++...        |.....+..++.++...|+++ +|+..|++++++        +|+...++.
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~--------~p~~~~~~~  343 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIE-EAVRLYRKALEV--------FPEFAAAHS  343 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HHHHHHHHHTTS--------CTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence            999999999999999987643        445567889999999999999 999999999863        355577899


Q ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          360 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      .+|.++...|++++|+..|++++++.|+..
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999998876544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.8e-31  Score=222.26  Aligned_cols=301  Identities=19%  Similarity=0.181  Sum_probs=251.8

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   90 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   90 (394)
                      .+|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+..+......
T Consensus        28 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   99 (388)
T d1w3ba_          28 QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHhhhhccccccccccccccccccc
Confidence            34556678899999999999999999999999986        2444678899999999999999999999887653110


Q ss_pred             h--------------c----------------------------------------------CCCCcchHhhhHhHHHHH
Q 016124           91 N--------------R----------------------------------------------GTESADLVLPLFSLGSLF  110 (394)
Q Consensus        91 ~--------------~----------------------------------------------~~~~~~~~~~~~~l~~~~  110 (394)
                      .              .                                              ....|....++..+|.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  179 (388)
T d1w3ba_         100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF  179 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccc
Confidence            0              0                                              001233456778899999


Q ss_pred             HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHH
Q 016124          111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  190 (394)
Q Consensus       111 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  190 (394)
                      ...|++++|...+++++..        +|....++..+|.++...|++++|+..++++.....       ..   ...+.
T Consensus       180 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~  241 (388)
T d1w3ba_         180 NAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-------NH---AVVHG  241 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-------TC---HHHHH
T ss_pred             cccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-------hH---HHHHH
Confidence            9999999999999999986        355566889999999999999999999999887632       22   34567


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124          191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  270 (394)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  270 (394)
                      .+|.++...|++++|+..+++++++        +|....++..+|.++...|++++|+..++.++..        .|...
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  305 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHA  305 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccc
Confidence            8999999999999999999999874        5666788999999999999999999999998873        45667


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC
Q 016124          271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE  350 (394)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~  350 (394)
                      ..+..+|.++...|++++|+..+++++++        .|....++..+|.++...|+++ +|+..|++++++        
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~l--------  368 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRI--------  368 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCH-HHHHHHHHHHTT--------
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------
Confidence            88899999999999999999999999864        3556678999999999999999 999999999964        


Q ss_pred             CHHHHHHHHHHHHHHHHhcC
Q 016124          351 SEEVMLTLKKVVSYLDKLGR  370 (394)
Q Consensus       351 ~~~~~~~~~~la~~~~~~g~  370 (394)
                      +|+...++.++|.+|.++|+
T Consensus       369 ~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         369 SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence            45557789999999999885

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1e-25  Score=189.05  Aligned_cols=347  Identities=10%  Similarity=-0.033  Sum_probs=279.4

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+......|.++...|++++|+.+++++++..+.   .+.+....++..+|.++...|++++|+..+++++.+.....
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            345566777899999999999999999999986422   23345667899999999999999999999999999877642


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                        +.+....++..++.++...|++..|...+.+++.+......+..+........+|.++...|+++.+...+.++....
T Consensus        86 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          86 --VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence              456677888999999999999999999999999998887666777778888999999999999999999999999887


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  252 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  252 (394)
                      ...     .......++...+..+...+++.++...+.++........ ...+....++..++.++...|++++|...++
T Consensus       164 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  237 (366)
T d1hz4a_         164 SSY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLR  237 (366)
T ss_dssp             TTS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhh-----hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            543     2223345668889999999999999999999988765432 2234456677888999999999999999998


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124          253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  332 (394)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A  332 (394)
                      +++.+.    ...++.....+.++|.++...|++++|...+++++......  ..+|....++..+|.++...|+++ +|
T Consensus       238 ~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A  310 (366)
T d1hz4a_         238 HTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-DA  310 (366)
T ss_dssp             HSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-HH
T ss_pred             HHHHhc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHH-HH
Confidence            876532    23345556677889999999999999999999999988764  566788899999999999999999 99


Q ss_pred             HHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124          333 LELLKRVLRIQEREFGSE-SEEVMLTLKKVVSYLDKLGRKEEKFPL  377 (394)
Q Consensus       333 ~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  377 (394)
                      ++.+++++++..+.-... .......+..+...+...++.+++...
T Consensus       311 ~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         311 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999999999877632110 011123445555666777888887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=5.9e-25  Score=184.32  Aligned_cols=316  Identities=13%  Similarity=0.005  Sum_probs=259.9

Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124           56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  135 (394)
Q Consensus        56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  135 (394)
                      ..+......|.++...|++++|+.+++++++....   .+.+....++..+|.++...|++++|+..|++++.+....  
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            44556666799999999999999999999886321   1223345688899999999999999999999999987763  


Q ss_pred             CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ++.+....++..++.++...|++..|...+.+++.+....  ..+..+....++..+|.++...|+++.+...+.+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  162 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            4566777889999999999999999999999999988765  34445555667788999999999999999999999876


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      ....   .......++..++..+...+++.++...+.++........ ...+.....+..++.++...|++++|...+++
T Consensus       163 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         163 LSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             TTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            5432   2344567788899999999999999999999988765542 23344556678889999999999999999998


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124          296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  375 (394)
Q Consensus       296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (394)
                      ++...    ..+++.....+..+|.++...|+++ +|...+++++......  ...|....++..+|.+|...|++++|.
T Consensus       239 ~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         239 TAKPE----FANNHFLQGQWRNIARAQILLGEFE-PAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             SCCCC----CTTCGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhc----cccchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            86642    2334555667888999999999999 9999999999988763  456888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 016124          376 PLKKRLSNLRMKYK  389 (394)
Q Consensus       376 ~~~~~a~~~~~~~~  389 (394)
                      +.+++++.+.++.+
T Consensus       312 ~~l~~Al~l~~~~~  325 (366)
T d1hz4a_         312 RVLLDALKLANRTG  325 (366)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhcC
Confidence            99999999887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=185.37  Aligned_cols=286  Identities=16%  Similarity=0.140  Sum_probs=217.3

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   98 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   98 (394)
                      .+..|..++..|++++|+..|+++++.        +|..+.++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            467899999999999999999999975        3555778999999999999999999999999987        456


Q ss_pred             hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-HHH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVG------MAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ....+..+|.++...|++++|+..+++++...+........ ...      .........+...+.+.+|...+.+++.+
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999998763321000000 000      01111222344567788999999998876


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  251 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  251 (394)
                      ...     ...   ..++..+|.++...|++++|+..+++++..        +|....++..+|.++...|++++|+..|
T Consensus       166 ~p~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         166 DPT-----SID---PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             STT-----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhc-----ccc---cccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHH
Confidence            422     111   345678999999999999999999999875        4566788999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC---ChhHHHHHHHHHHHHHHhCCC
Q 016124          252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD---SLPVGEALDCLVSIQTRLGED  328 (394)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~  328 (394)
                      ++++++        .|....++.++|.+|...|++++|+..|++++++.....+..   .......+..++.++...|+.
T Consensus       230 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         230 RRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence            999984        466678999999999999999999999999999864322111   111233566788888888887


Q ss_pred             chHHHHHHHHHHHHHHh
Q 016124          329 DTKLLELLKRVLRIQER  345 (394)
Q Consensus       329 ~~~A~~~~~~al~~~~~  345 (394)
                      + .+.....+.++...+
T Consensus       302 d-~~~~~~~~~l~~l~~  317 (323)
T d1fcha_         302 D-AYGAADARDLSTLLT  317 (323)
T ss_dssp             G-GHHHHHTTCHHHHHH
T ss_pred             H-HHHHHHHhCHHHHHH
Confidence            7 555555555544433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-25  Score=183.03  Aligned_cols=286  Identities=15%  Similarity=0.053  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      .+..|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            457899999999999999999999975        6777889999999999999999999999999987        344


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-----MENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      ....+..+|.++...|++++|+..+++++...............     ...........+...+.+.+|...+.+++..
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999998864432100000000     0001112223344566788899998888765


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  295 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (394)
                      .     ++ .....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++
T Consensus       166 ~-----p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  231 (323)
T d1fcha_         166 D-----PT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRR  231 (323)
T ss_dssp             S-----TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             h-----hc-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHH
Confidence            2     22 223567889999999999999999999999874        466778999999999999999999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHhcCch
Q 016124          296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE---SEEVMLTLKKVVSYLDKLGRKE  372 (394)
Q Consensus       296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~  372 (394)
                      ++++.        |....++..+|.++...|+++ +|+..|++++++.....+..   ......++..++.++...|+.+
T Consensus       232 al~~~--------p~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         232 ALELQ--------PGYIRSRYNLGISCINLGAHR-EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHC--------TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHh--------hccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            99853        444568999999999999999 99999999999876532211   1112245677888999999998


Q ss_pred             hhhhhHHHHHHHH
Q 016124          373 EKFPLKKRLSNLR  385 (394)
Q Consensus       373 ~A~~~~~~a~~~~  385 (394)
                      .+.....+.+...
T Consensus       303 ~~~~~~~~~l~~l  315 (323)
T d1fcha_         303 AYGAADARDLSTL  315 (323)
T ss_dssp             GHHHHHTTCHHHH
T ss_pred             HHHHHHHhCHHHH
Confidence            8877766666433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.3e-21  Score=155.17  Aligned_cols=262  Identities=10%  Similarity=-0.039  Sum_probs=209.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCc-HHHHHHHHHHHHHHHHH
Q 016124           54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  132 (394)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~  132 (394)
                      .|....++..+|.++...+.+++|+..+++++++        .|....+++..|.++...|+ +++|+..+++++.+   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            4678899999999999999999999999999998        67888999999999999874 99999999999987   


Q ss_pred             hhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124          133 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  212 (394)
Q Consensus       133 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  212 (394)
                           +|....++.++|.++..+|++++|+..+.+++++..+       .   ..++.++|.++...|++++|+..++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-------n---~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------N---YHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-------c---hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                 5666789999999999999999999999999997432       2   457789999999999999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcCh
Q 016124          213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  286 (394)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  286 (394)
                      +++        +|....++.++|.++...+.      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       173 l~~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         173 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             HHH--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            986        56777889999999887665      67899999998884        4667788888988866544 6


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 016124          287 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  364 (394)
Q Consensus       287 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  364 (394)
                      +++...+.+++++.     +++ .....+..++.++...  ++.+ .+...+.+++++.......-+|.....|..++..
T Consensus       236 ~~~~~~~~~~~~l~-----~~~-~~~~~~~~l~~~y~~~~~~~~~-~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PSH-SSPYLIAFLVDIYEDMLENQCD-NKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TTC-CCHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CCc-CCHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88888888887754     222 2233455667666543  6667 8888999998876654333344444445555544


Q ss_pred             H
Q 016124          365 L  365 (394)
Q Consensus       365 ~  365 (394)
                      +
T Consensus       309 l  309 (315)
T d2h6fa1         309 L  309 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.8e-21  Score=154.97  Aligned_cols=261  Identities=11%  Similarity=0.002  Sum_probs=208.3

Q ss_pred             chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHH
Q 016124           12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILEL   90 (394)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~   90 (394)
                      +|+...++..+|.++...+.+++|+..+++++.+        .|....+++..|.++...|. +++|+..+++++.+   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            6889999999999999999999999999999997        35567789999999999875 89999999999987   


Q ss_pred             hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124           91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  170 (394)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  170 (394)
                           +|....++..+|.++..+|++++|+..+.+++++        +|....++.++|.++...|++++|+..++++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 6778899999999999999999999999999987        566667899999999999999999999999999


Q ss_pred             HHHhcccCCCchHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccH
Q 016124          171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  244 (394)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  244 (394)
                      +..       ..   ..++.++|.++...++      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       175 ~~p-------~n---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         175 EDV-------RN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             HCT-------TC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             HCC-------cc---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            632       22   4467889999888877      46888888888875        4666778888888866544 5


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124          245 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  321 (394)
Q Consensus       245 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  321 (394)
                      +++...++.++++.      ..+....++..++.+|..  .++.+.+...+.+++.+.......-+|.....|..++..
T Consensus       236 ~~~~~~~~~~~~l~------~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GGCHHHHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC------CCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            78888888887752      223345566677777755  467788888999988876554323334333444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=9.3e-19  Score=140.93  Aligned_cols=229  Identities=12%  Similarity=0.084  Sum_probs=177.3

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+..|...|.+|...|+|++|+..|.+++++....  .+.+..+.++..+|.+|...|++++|+..+++++.+.....
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence            3347789999999999999999999999999998763  45567889999999999999999999999999999987753


Q ss_pred             CCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                        .......++..+|.++.. .|++++|+.+|++++++....  ...+....++.++|.++...|+|++|+..|++++..
T Consensus       112 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         112 --QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence              445567788899998865 699999999999999988764  345567788999999999999999999999999887


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH--cccHHHHHH
Q 016124          172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAER  249 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~  249 (394)
                      ....   ..........+...+.++...|+++.|...+++++++.....   .......+..+...+..  .+.+++|+.
T Consensus       188 ~~~~---~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~  261 (290)
T d1qqea_         188 SMGN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCK  261 (290)
T ss_dssp             TSSC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             Cccc---hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            6542   112233445567889999999999999999998876543221   11112344555555544  345777777


Q ss_pred             HHHH
Q 016124          250 LLRI  253 (394)
Q Consensus       250 ~~~~  253 (394)
                      .|.+
T Consensus       262 ~y~~  265 (290)
T d1qqea_         262 EFDN  265 (290)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.8e-19  Score=142.16  Aligned_cols=228  Identities=13%  Similarity=0.019  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+..+...|.+|...|+|++|+..|.+++++.....  +.+..+.++.++|.+|...|++++|+.++++++.+....  .
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~  111 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--G  111 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--c
Confidence            355677778999999999999999999999987754  556778899999999999999999999999999998875  3


Q ss_pred             CchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .......++..+|.++.. .|++++|+.++++++++....    ..++....++.++|.++..+|++++|+..|++++..
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~----~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc----CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            455667788999998865 699999999999999998763    456667788999999999999999999999998876


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh--hcChHHHHHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLV  293 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~  293 (394)
                      ..... .........+...+.++...|++..|...++++.++.....   .......+..+..++..  .+.+++|+..|
T Consensus       188 ~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         188 SMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             TSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             Cccch-hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            43221 12234455677889999999999999999998876432210   11112344555555554  34567777776


Q ss_pred             HHH
Q 016124          294 LEA  296 (394)
Q Consensus       294 ~~a  296 (394)
                      .++
T Consensus       264 ~~~  266 (290)
T d1qqea_         264 DNF  266 (290)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.6e-19  Score=142.22  Aligned_cols=213  Identities=11%  Similarity=0.058  Sum_probs=146.4

Q ss_pred             cccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 016124            4 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   83 (394)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   83 (394)
                      ++......++..+.+++.+|.+|...|++++|+..|++++.+     .   |..+.++..+|.++...|++++|+..|++
T Consensus        25 ~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   96 (259)
T d1xnfa_          25 ILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----R---PDMPEVFNYLGIYLTQAGNFDAAYEAFDS   96 (259)
T ss_dssp             HHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----C---CCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence            344444467788899999999999999999999999999987     2   34456789999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124           84 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  163 (394)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  163 (394)
                      ++.+        +|....++.++|.++...|++++|+..++++++..     +.+   ......++..+...+..+.+..
T Consensus        97 al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T d1xnfa_          97 VLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND---PFRSLWLYLAEQKLDEKQAKEV  160 (259)
T ss_dssp             HHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-----ccc---HHHHHHHHHHHHHhhhHHHHHH
Confidence            9987        45667789999999999999999999999998862     222   2334455666666665555444


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHccc
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  243 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  243 (394)
                      ........       .+..+........++. ....+..+.+...+......        .+....++.++|.++...|+
T Consensus       161 ~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~  224 (259)
T d1xnfa_         161 LKQHFEKS-------DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLGD  224 (259)
T ss_dssp             HHHHHHHS-------CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhcc-------chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHHHHHHHHHHCCC
Confidence            43333221       1222211111111110 01111223333333332222        24456788899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 016124          244 FVEAERLLRICLD  256 (394)
Q Consensus       244 ~~~A~~~~~~a~~  256 (394)
                      +++|+.+|++++.
T Consensus       225 ~~~A~~~~~~al~  237 (259)
T d1xnfa_         225 LDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3e-19  Score=147.34  Aligned_cols=276  Identities=10%  Similarity=-0.072  Sum_probs=206.3

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHhCCchHHH-------HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           25 MYSTLENYEKSMLVYQRVINVLESRYGKTSILL-------VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        25 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .....+..++|+.++++++.+     .|+.+..       ...+...+..+...|++.+|+.++++++..        +|
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~-----~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~p  104 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGA-----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP  104 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhcccccHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CC
Confidence            333333458999999999986     2333221       122233344455667788999999998876        56


Q ss_pred             chHhhhHhHHHHHHHhCc--HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124           98 DLVLPLFSLGSLFIKEGK--AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  175 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  175 (394)
                      ....++..+|.++...++  +++|+..+.+++..       +..........+|.++...+++++|+..+++++.+.   
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---  174 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---  174 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---
Confidence            777888889988888765  89999999999987       222233335677899999999999999999988742   


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124          176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  255 (394)
Q Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  255 (394)
                          |..   ..++.++|.++...|++++|...+.+++.+....            ......+...+..+++...+.+++
T Consensus       175 ----p~~---~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         175 ----FSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------LELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             ----CCC---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             ----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------HHHHHHHHHhcchhHHHHHHHHHH
Confidence                332   4567899999999999999999888887765332            123334556677888998888887


Q ss_pred             HHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHH
Q 016124          256 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  335 (394)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~  335 (394)
                      ..        .|.....+..++.++...|++.+|+..+.+++.        .+|....++..+|.++...|+++ +|+.+
T Consensus       236 ~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~-eA~~~  298 (334)
T d1dcea1         236 LG--------RAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEK-ETLQY  298 (334)
T ss_dssp             HS--------CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHH-HHHHH
T ss_pred             Hh--------CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHH-HHHHH
Confidence            62        344444556788899999999999999888764        56888899999999999999999 99999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 016124          336 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  367 (394)
Q Consensus       336 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  367 (394)
                      |++++++        +|.....+..|+..+..
T Consensus       299 ~~~ai~l--------dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         299 FSTLKAV--------DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHH--------CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHH--------CcccHHHHHHHHHHHhH
Confidence            9999986        45556677778777664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.1e-18  Score=135.20  Aligned_cols=222  Identities=14%  Similarity=0.047  Sum_probs=152.4

Q ss_pred             hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124           72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  151 (394)
Q Consensus        72 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  151 (394)
                      ++.+.|+..+++++...    ...++..+.+++.+|.+|...|++++|+..|++++.+        +|..+.++.++|.+
T Consensus        13 ~~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          13 LQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchH
Confidence            34556666666554321    1234567789999999999999999999999999987        34456689999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124          152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  231 (394)
Q Consensus       152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  231 (394)
                      +...|++++|+..|++++++.+       +.   ..++.++|.++...|++++|+..++++++.        .|......
T Consensus        81 ~~~~g~~~~A~~~~~~al~~~p-------~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  142 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLELDP-------TY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRS  142 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-------TC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHh-------hh---hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--------ccccHHHH
Confidence            9999999999999999999743       22   345689999999999999999999999886        23333445


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHHHHHHcCCC
Q 016124          232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKD  307 (394)
Q Consensus       232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~  307 (394)
                      ..++..+...+..+.+.........     .....+.     ..+...+..    .+..+.+...+.......       
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  205 (259)
T d1xnfa_         143 LWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWG-----WNIVEFYLGNISEQTLMERLKADATDNTSLA-------  205 (259)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTH-----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhc-----cchhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-------
Confidence            5566666666655554444333322     1111111     112222211    122333333333333322       


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124          308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~  342 (394)
                       |....++..+|.++...|+++ +|+.+|++++..
T Consensus       206 -~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~  238 (259)
T d1xnfa_         206 -EHLSETNFYLGKYYLSLGDLD-SATALFKLAVAN  238 (259)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT
T ss_pred             -cccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHc
Confidence             555678889999999999999 999999999863

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=8.3e-19  Score=144.63  Aligned_cols=257  Identities=11%  Similarity=-0.006  Sum_probs=196.4

Q ss_pred             HhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH----------HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           70 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG----------SLFIKEGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        70 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      ..+..++|+.++++++..        +|+...++...+          ..+...|++++|+.++++++..        +|
T Consensus        41 ~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~p  104 (334)
T d1dcea1          41 AGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP  104 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             cccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CC
Confidence            333458999999999986        445454444433          4455556688888888888875        45


Q ss_pred             HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGN--AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      ....++..+|.++...++  +++|+..+.+++.....      ..   .......|.++...+++++|+..+++++.+  
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~------~~---~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--  173 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NF---HCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CH---HHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch------hh---hhhhhHHHHHHHhccccHHHHHHHHHHHHc--
Confidence            556678888888877664  89999999999996321      11   222356788999999999999999988764  


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                            +|....++.++|.++...|++++|...+++++.+....            ......+...+..+++...+.+++
T Consensus       174 ------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------LELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------HHHHHHHHHhcchhHHHHHHHHHH
Confidence                  67788899999999999999999988888777754322            233445566788889999988887


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124          298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  377 (394)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  377 (394)
                      ...     +..   ...+..++.++...|++. +|+..+.+++        ..+|....++..+|.++...|++++|+.+
T Consensus       236 ~~~-----~~~---~~~~~~l~~~~~~~~~~~-~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~~~~~eA~~~  298 (334)
T d1dcea1         236 LGR-----AEP---LFRCELSVEKSTVLQSEL-ESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQY  298 (334)
T ss_dssp             HSC-----CCC---SSSCCCCHHHHHHHHHHH-HHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred             HhC-----cch---hhHHHHHHHHHHHHhhHH-HHHHHHHHHH--------hhCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            632     222   234567788888888888 8888888776        45789999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 016124          378 KKRLSNLRMKY  388 (394)
Q Consensus       378 ~~~a~~~~~~~  388 (394)
                      |++++++.|..
T Consensus       299 ~~~ai~ldP~~  309 (334)
T d1dcea1         299 FSTLKAVDPMR  309 (334)
T ss_dssp             HHHHHHHCGGG
T ss_pred             HHHHHHHCccc
Confidence            99999998743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.6e-15  Score=129.66  Aligned_cols=233  Identities=13%  Similarity=0.029  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh
Q 016124           34 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  113 (394)
Q Consensus        34 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (394)
                      +|+.+|++|+.+-        |..+.++.++|.++..+|++.+|   |++++..        +|..+..+...+.+.  .
T Consensus         4 eA~q~~~qA~~l~--------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~   62 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--N   62 (497)
T ss_dssp             HHHHHHHHHHHHH--------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--H
T ss_pred             HHHHHHHHHHHcC--------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--H
Confidence            7899999999873        45566788899999999999887   7887765        344444433332222  1


Q ss_pred             CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH
Q 016124          114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  193 (394)
Q Consensus       114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la  193 (394)
                      ..|..+++.+++.....   ...+....  ....++.+....+.|+.|+..+.+++.+.          +.....+.++|
T Consensus        63 ~~y~~~ie~~r~~~k~~---~~~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~----------~~~~~~~~~lg  127 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKNR---ANPNRSEV--QANLSLFLEAASGFYTQLLQELCTVFNVD----------LPCRVKSSQLG  127 (497)
T ss_dssp             HHTHHHHHHHHHHHSCS---SCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHHHHHhcccc---cCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHhH
Confidence            12344555555443210   01111111  11223444444555555555555554431          22244568899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 016124          194 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  273 (394)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  273 (394)
                      .++...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++++.+        .|....++
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~  189 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPY  189 (497)
T ss_dssp             ---------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHH
Confidence            99999999999999999887653          2357889999999999999999999999985        57888999


Q ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124          274 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  328 (394)
Q Consensus       274 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  328 (394)
                      ..||.++...|++.+|+.+|.+++.+.        +....++.+|+.++.+..+.
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAVK--------FPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999998643        33456788898888776544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8e-16  Score=132.88  Aligned_cols=232  Identities=10%  Similarity=0.026  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHC
Q 016124           76 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  155 (394)
Q Consensus        76 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  155 (394)
                      +|+++|++|+++        .|+.+.++.++|.++..+|++++|   |++++..        +|.........+.+.  .
T Consensus         4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~   62 (497)
T d1ya0a1           4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--N   62 (497)
T ss_dssp             HHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--H
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--H
Confidence            689999999998        466778899999999999999887   7888765        455444443333222  1


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 016124          156 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  235 (394)
Q Consensus       156 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  235 (394)
                      ..|..+++.+++..+..     ..++......  ..++.+....+.|+.|+..+.+++.+        .|.....+.++|
T Consensus        63 ~~y~~~ie~~r~~~k~~-----~~~~~~~~~~--~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg  127 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKNR-----ANPNRSEVQA--NLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLG  127 (497)
T ss_dssp             HHTHHHHHHHHHHHSCS-----SCTTTTHHHH--HHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred             HHHHHHHHHHHHhcccc-----cCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhH
Confidence            12445555555544321     1122222211  22344455555666666655555443        355566788999


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 016124          236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  315 (394)
Q Consensus       236 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  315 (394)
                      ..+...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++|+.+.        |..+.++
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~  189 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPY  189 (497)
T ss_dssp             ---------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHH
Confidence            99999999999999999888742          23578899999999999999999999999865        5666789


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 016124          316 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  370 (394)
Q Consensus       316 ~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  370 (394)
                      +.||.++...|+.. +|+.+|.+++.+     .   |....++.+|+.++.+..+
T Consensus       190 ~~Lg~~~~~~~~~~-~A~~~y~ral~~-----~---~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         190 NQLAILASSKGDHL-TTIFYYCRSIAV-----K---FPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHHSS-----S---BCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHhC-----C---CCCHHHHHHHHHHHHHhhh
Confidence            99999999999999 999999999853     1   2224455666666555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.9e-14  Score=105.54  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .+...|..+...|+|++|+..|.++        .+.+   ..+++++|.++..+|++++|+..|++++++        +|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp   67 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   67 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence            3456799999999999999998753        1222   346889999999999999999999999987        57


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh-------hC-CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------YG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      ..+.++.++|.++..+|++++|+..|++++...+..       .+ ........+++++|.++...|++++|+..+.+++
T Consensus        68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            778899999999999999999999999998753221       00 0112245678999999999999999999999988


Q ss_pred             HHH
Q 016124          170 RVI  172 (394)
Q Consensus       170 ~~~  172 (394)
                      .+.
T Consensus       148 ~~~  150 (192)
T d1hh8a_         148 SMK  150 (192)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-14  Score=105.54  Aligned_cols=136  Identities=14%  Similarity=0.130  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      +++.|..+...|+|++|++.|.++           .+..+.+++++|.+|..+|++++|+..|++++++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i-----------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV-----------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-----------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            446699999999999999988752           1223567899999999999999999999999987        466


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC------CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      .+.++.++|.++..+|++++|+..|++++...+.....      .........++.++|.++...|++++|++.+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            67799999999999999999999999999865432100      000112246778999999999999999999998876


Q ss_pred             H
Q 016124          215 I  215 (394)
Q Consensus       215 ~  215 (394)
                      +
T Consensus       149 ~  149 (192)
T d1hh8a_         149 M  149 (192)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-13  Score=98.18  Aligned_cols=130  Identities=13%  Similarity=0.072  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   93 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   93 (394)
                      ..+..+...|..++..|+|++|+..|++++++        +|....++..+|.++...|++++|+..|++++++      
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence            45677889999999999999999999999987        2456778999999999999999999999999988      


Q ss_pred             CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--HHHCCCHHHHHHHHHH
Q 016124           94 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA--KCANGNAEEAVELYKK  167 (394)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~  167 (394)
                        .|....++..+|.++..+|++++|+..+++++.+     .++++.   +...++.+  ....+.+++|+.....
T Consensus        74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence              5677889999999999999999999999999987     333433   33334433  3334445555544333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.52  E-value=4.1e-13  Score=96.42  Aligned_cols=138  Identities=9%  Similarity=0.102  Sum_probs=105.9

Q ss_pred             HHHHHHHHH--HHHHHhhhchHHHHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           14 LLDAILLHM--GSMYSTLENYEKSMLVYQRVINVLESRYGK----TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        14 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      +++.++..+  |..++..|+|++|+..|++++++.+.....    ..+..+.++.++|.+|..+|++++|+..+++++.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            455666555  788889999999999999999987654221    13356778999999999999999999999999999


Q ss_pred             HHHhcCCC---CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 016124           88 LELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  152 (394)
Q Consensus        88 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  152 (394)
                      ..+.....   .+....+++++|.+|..+|++++|+..|++++++.+...+ ..+........++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l  151 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRI  151 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHH
Confidence            88764322   2345667899999999999999999999999999887643 2333334444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.52  E-value=1.3e-12  Score=93.74  Aligned_cols=140  Identities=19%  Similarity=0.175  Sum_probs=105.9

Q ss_pred             HhhhHhH--HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124          100 VLPLFSL--GSLFIKEGKAVDAESVFSRILKIYTKVYGEN----DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  173 (394)
Q Consensus       100 ~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  173 (394)
                      +.++..+  |..++..|+|++|+..|++++++.+......    .+..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3444444  7888899999999999999999976642211    233567899999999999999999999999999987


Q ss_pred             hcccCC-CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q 016124          174 DSNYMS-LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  240 (394)
Q Consensus       174 ~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  240 (394)
                      +..... ...+....+++++|.+|..+|++++|+..|++++++..+..+. .+........++..+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHH
Confidence            642222 3345667788999999999999999999999999998776543 34444444444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.4e-13  Score=94.99  Aligned_cols=100  Identities=14%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124           57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+..+...|..++..|+|++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++       
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------   73 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-------
Confidence            3455677899999999999999999999997        5778899999999999999999999999999987       


Q ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                       +|....++..+|.++..+|++++|+..+++++.+.
T Consensus        74 -~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          74 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             -cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence             45666789999999999999999999999999863

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-13  Score=93.13  Aligned_cols=97  Identities=13%  Similarity=0.074  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      .-+...|..++..|++++|+..|++++..        .|....++..+|.++...|++++|+..+.+++.+        .
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~   67 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K   67 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------c
Confidence            33677899999999999999999999986        2455678999999999999999999999999987        5


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      |....++..+|.++..+|++++|+..|+++++.
T Consensus        68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            667789999999999999999999999999976

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.8e-13  Score=90.71  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      +...|..++..|++++|+..|++++..        .|..+.++..+|.++...|++++|+..+.+++.+        .|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            556799999999999999999999987        5777889999999999999999999999999987        355


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      ...++.++|.++..+|++++|+..|++++++
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.8e-13  Score=96.31  Aligned_cols=131  Identities=18%  Similarity=0.212  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   87 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   87 (394)
                      .+..+...|..++..|+|++|+..|++++...+......       .+....++.++|.+|...|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            466778899999999999999999999998864332211       1245567788999999999999999999999987


Q ss_pred             HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHH
Q 016124           88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  161 (394)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  161 (394)
                              +|....++..+|.++..+|++++|+..|++++.+     .|+++   .+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNK---AAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHHH
Confidence                    5677889999999999999999999999999987     33444   3455666666555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-12  Score=92.18  Aligned_cols=133  Identities=12%  Similarity=0.061  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc-----hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-----DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .+..+...|..++..|+|++|+..|++++.+..........     ......++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35567789999999999999999999999987654211111     2344567788999999999999999999999986


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  289 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (394)
                              +|....++..+|.++..+|++++|+..|++++.+        +|....+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    4667788999999999999999999999999985        355566777788877766655544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-12  Score=89.75  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=91.9

Q ss_pred             hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124          101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      ..+..+|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|+|++|+..+++++++.+..   ..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~---~~   73 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---RE   73 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc---HH
Confidence            45668999999999999999999999987        34456689999999999999999999999999998763   34


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .....+.++..+|.++...+++++|+.+|++++..
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            55677889999999999999999999999999864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-12  Score=87.52  Aligned_cols=105  Identities=9%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      +..+..+|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.+... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            345668899999999999999999999997        456678999999999999999999999999999876642 33


Q ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124          138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  171 (394)
Q Consensus       138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  171 (394)
                      .+..+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4567789999999999999999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=8.1e-11  Score=92.73  Aligned_cols=222  Identities=15%  Similarity=0.167  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH----hhchhHHHHHHHHHHHHHHHh
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELN   91 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~   91 (394)
                      +.+++.+|..++..+++++|+.+|+++.+.     +     ...++..||.+|..    ..++..|..+++.+...    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-----K-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            357889999999999999999999999763     1     23578889999987    56888888888887653    


Q ss_pred             cCCCCcchHhhhHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----CCCHHHHHH
Q 016124           92 RGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVE  163 (394)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  163 (394)
                            ....+...+|.++..    ..+.+.|...++++...       ..+   .+...++..+..    ......|..
T Consensus        68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~~---~a~~~l~~~~~~~~~~~~~~~~a~~  131 (265)
T d1ouva_          68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KYA---EGCASLGGIYHDGKVVTRDFKKAVE  131 (265)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ------cccchhhccccccccccccchhhHHHHHHHhhhhhh-------hhh---hHHHhhcccccCCCcccchhHHHHH
Confidence                  233556677777765    46788899999888753       122   234556666654    455777777


Q ss_pred             HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124          164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  239 (394)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  239 (394)
                      .+.+....         ..   ...+..+|.++...    .+...+..+++.+.+.          ....+..++|.+|.
T Consensus       132 ~~~~~~~~---------~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~  189 (265)
T d1ouva_         132 YFTKACDL---------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYH  189 (265)
T ss_dssp             HHHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred             Hhhhhhcc---------cc---cchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcc
Confidence            77765542         11   23457788888863    4555666666665532          23567889999998


Q ss_pred             H----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHH
Q 016124          240 R----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  299 (394)
Q Consensus       240 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  299 (394)
                      .    ..++++|+.+|+++.+.       .   ...++++||.+|..    ..++++|..+|++|...
T Consensus       190 ~g~~~~~d~~~A~~~~~~aa~~-------g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         190 HGEGATKNFKEALARYSKACEL-------E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cCcccccchhhhhhhHhhhhcc-------c---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            7    67899999999999772       2   35688999999986    44899999999999774

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.45  E-value=1.4e-10  Score=91.26  Aligned_cols=221  Identities=17%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhh
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVY  134 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~  134 (394)
                      .+++.+|..+...|++++|+++|+++.+.          ....+...||.+|..    ..++..|..+++.+...     
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            46889999999999999999999999654          235678899999987    67899999998887653     


Q ss_pred             CCCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHH
Q 016124          135 GENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGR  206 (394)
Q Consensus       135 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  206 (394)
                        .++   .+...+|.++..    ..+.+.|...++.+...       +..     .+...++..+..    ......|.
T Consensus        68 --~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~~-----~a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          68 --NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KYA-----EGCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             --TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH-----HHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             --ccc---chhhccccccccccccchhhHHHHHHHhhhhhh-------hhh-----hHHHhhcccccCCCcccchhHHHH
Confidence              233   345667777654    56889999999988762       111     223456666654    33455566


Q ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh
Q 016124          207 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  282 (394)
Q Consensus       207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  282 (394)
                      ..+.+...          +.....+..+|.++..    ..+...+..+++.+.+          .....+..++|.+|..
T Consensus       131 ~~~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~A~~~lg~~y~~  190 (265)
T d1ouva_         131 EYFTKACD----------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----------LKDSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHHH----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhc----------ccccchhhhhhhhhccCCCcccccccchhhhhcccc----------ccccccccchhhhccc
Confidence            66555433          2234567789999886    4566777777777765          2245688899999987


Q ss_pred             ----hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHH
Q 016124          283 ----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI  342 (394)
Q Consensus       283 ----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~A~~~~~~al~~  342 (394)
                          ..++++|+.+|+++.+.       ++   ..+++.||.+|..    ..++. +|..+|++|.+.
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~-~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEK-QAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCST-THHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHH-HHHHHHHHHHHC
Confidence                67899999999998762       33   3478899999985    33677 999999999874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.45  E-value=3.4e-12  Score=92.75  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      ..+..+...|..++..|+|.+|+..|++++...+.....       ..+....++.++|.+|..+|++++|+..+++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            456778899999999999999999999999876443221       1234566788899999999999999999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHH-HHHHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELY  165 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~  165 (394)
                      +        +|....+++.+|.++..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ....+
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7        5677889999999999999999999999999976        23334456666666655554433 33444


Q ss_pred             HHHHH
Q 016124          166 KKALR  170 (394)
Q Consensus       166 ~~a~~  170 (394)
                      .+..+
T Consensus       157 ~~~f~  161 (168)
T d1kt1a1         157 ANMFK  161 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=2.2e-12  Score=94.03  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124           15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   86 (394)
Q Consensus        15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   86 (394)
                      .+..+...|..++..|+|.+|+..|++++........        ...|..+.++.++|.++...|++++|+..++++++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            3455678899999999999999999999987543211        12466788899999999999999999999999998


Q ss_pred             HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHH
Q 016124           87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  159 (394)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  159 (394)
                      +        +|..+.+++.+|.++..+|++++|+..|++++++     .++++   .+...++.+........
T Consensus       106 ~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~---~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         106 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDK---AIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHHHH
T ss_pred             h--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHH
Confidence            6        5677899999999999999999999999999997     33333   34555665554444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.43  E-value=1.3e-12  Score=93.27  Aligned_cols=108  Identities=13%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124           14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   85 (394)
Q Consensus        14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   85 (394)
                      ..+..+...|..++..|+|.+|+..|++++...........        +....++.++|.+|..+|++++|+..+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            34556788999999999999999999999987543322211        2345678899999999999999999999999


Q ss_pred             HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ++        +|....+++.+|.++..+|++++|+..|++++++
T Consensus        95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            87        5777899999999999999999999999999998

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=7.6e-13  Score=99.94  Aligned_cols=100  Identities=19%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..+...|..++..|+|++|+..|++++.+        .|..+.++.++|.+|...|++++|+..|++++++        +
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            34668899999999999999999999997        5677899999999999999999999999999876        4


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      |....++.++|.+|..+|++++|+..|++++.+.+.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            666778999999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=1.4e-12  Score=87.60  Aligned_cols=93  Identities=15%  Similarity=0.042  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  140 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  140 (394)
                      .+.+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            467899999999999999999999987        5667899999999999999999999999999997        456


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKAL  169 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~  169 (394)
                      ...++..+|.+|...|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            66789999999999999999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=9.1e-13  Score=99.48  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   96 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   96 (394)
                      ..+...|..++..|+|++|+.+|++++.+.        |..+.++.++|.+|...|++++|+..|++++++        .
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            446789999999999999999999999872        445678999999999999999999999999876        5


Q ss_pred             cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124           97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  132 (394)
Q Consensus        97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  132 (394)
                      |....++.++|.+|..+|++++|+..|++++.+.+.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            777889999999999999999999999999998654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.40  E-value=1.4e-11  Score=87.85  Aligned_cols=127  Identities=14%  Similarity=0.064  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD------DSIMENMRIDLAELLHIVGRGQEGRELLEECLL  214 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  214 (394)
                      .+..+...|..++..|+|.+|+..|.+++.+..........      .+....++.++|.+|..+|++++|+..+++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            34456778999999999999999999999877553111111      122356788999999999999999999999998


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124          215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  283 (394)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  283 (394)
                      +        +|....+++++|.++..+|++++|+..|++++++        .|....+...++.+....
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            6        5677889999999999999999999999999985        355555666666655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=3.7e-12  Score=85.45  Aligned_cols=93  Identities=11%  Similarity=-0.063  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124          189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  268 (394)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  268 (394)
                      ...+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            367899999999999999999999986        4667889999999999999999999999999995        577


Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124          269 ISFPMLHLGITLYHLNRDKEAEKLVLEAL  297 (394)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~  297 (394)
                      ...++..+|.+|...|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            78899999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=2.4e-11  Score=88.17  Aligned_cols=132  Identities=13%  Similarity=0.069  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC-----CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124          141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-----LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  215 (394)
Q Consensus       141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  215 (394)
                      .+..+...|..++..|+|.+|+..|.+++..........     ...+....++.++|.+|..+|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            345677889999999999999999999999875531111     122345667889999999999999999999999986


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHH
Q 016124          216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  288 (394)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  288 (394)
                              +|....++.++|.++...|++++|+..|++++.+        +|....+...++.+....+.+.+
T Consensus        94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHH
Confidence                    5677789999999999999999999999999883        45666777788877766665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.2e-10  Score=93.81  Aligned_cols=193  Identities=16%  Similarity=0.119  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH
Q 016124          116 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  195 (394)
Q Consensus       116 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~  195 (394)
                      .++|...|++++..       ..|.....+...+......|++++|...|++++...       +.+.  ..++...+..
T Consensus        80 ~~~a~~i~~ral~~-------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~--~~~w~~~~~~  143 (308)
T d2onda1          80 SDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDP--TLVYIQYMKF  143 (308)
T ss_dssp             HHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCT--HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-------cCCh--HHHHHHHHHH
Confidence            45555555555532       233444567788899999999999999999998742       2221  2235677888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124          196 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  274 (394)
Q Consensus       196 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (394)
                      ....|+++.|...|++++..        .|.....+...+... ...|+.+.|...|++++..        .|.....+.
T Consensus       144 ~~~~~~~~~ar~i~~~al~~--------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~  207 (308)
T d2onda1         144 ARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVL  207 (308)
T ss_dssp             HHHHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHH
Confidence            88999999999999998763        334445566666654 4468999999999999984        345567788


Q ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhh
Q 016124          275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE  346 (394)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~  346 (394)
                      ..+..+...|+++.|..+|++++...     +.+|. ....+..........|+.+ .+...++++.+.+...
T Consensus       208 ~y~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~~~fE~~~G~~~-~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         208 AYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLA-SILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCccc
Confidence            88999999999999999999998743     33333 3445666777778889999 9999999998877543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=2.3e-11  Score=88.47  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124          144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  217 (394)
Q Consensus       144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  217 (394)
                      .+...|..+...|+|++|+..|.+++..........      ...+....++.++|.++..+|++++|+..+++++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            345678889999999999999999998754321011      123556778899999999999999999999999874  


Q ss_pred             HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHH
Q 016124          218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  289 (394)
Q Consensus       218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (394)
                            +|....++.++|.++..+|++++|+..|++++++        .|....+...++.+........++
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  5777889999999999999999999999999995        344555666777776655544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.3e-10  Score=91.14  Aligned_cols=224  Identities=13%  Similarity=0.036  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--------------HhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           32 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG--------------SIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      .+.+...|++|+....     .+|.   .+...+..+.              ..+..++|...|++++..       ..|
T Consensus        32 ~~Rv~~vyerAl~~~~-----~~~~---lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p   96 (308)
T d2onda1          32 TKRVMFAYEQCLLVLG-----HHPD---IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCHH---HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred             HHHHHHHHHHHHHHCC-----CCHH---HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence            4567778888887642     2332   3333333322              223345566666665542       244


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  177 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  177 (394)
                      .....+...+.+....|+++.|...|++++..     .+.+  ...++...+......|+++.|...|+++++..     
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~--~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-----  164 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----  164 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCC--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----
Confidence            55567788899999999999999999999864     1222  23356777888889999999999999998743     


Q ss_pred             CCCchHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124          178 MSLDDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  256 (394)
Q Consensus       178 ~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  256 (394)
                        +...   ..+...+... ...|+.+.|...|++++...        |.....+...+......|+++.|..+|++++.
T Consensus       165 --~~~~---~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         165 --RTRH---HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             --TCCT---HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             --CCcH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence              2222   2234555554 44689999999999998752        44456778889999999999999999999987


Q ss_pred             HHHhhcCCCCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124          257 IMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  300 (394)
Q Consensus       257 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  300 (394)
                      ..     +.+| .....+......-...|+.+.+..+++++.+.+
T Consensus       232 ~~-----~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         232 SG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             SS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             hC-----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            32     2223 233456666777778899999999999887776

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-11  Score=83.40  Aligned_cols=97  Identities=10%  Similarity=0.022  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC---cHHHHHHHHHHHHHHHHHhhCCCc
Q 016124           62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEND  138 (394)
Q Consensus        62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~  138 (394)
                      ..++..+...+++++|++.|++++.+        .|....+++++|.++...+   ++++|+..+++++..      ...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCC
Confidence            35677888999999999999999997        6777889999999998754   455688888887753      123


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  172 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  172 (394)
                      +....+++++|.+|...|++++|+.+|++++++.
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            4456789999999999999999999999999973

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.7e-11  Score=80.78  Aligned_cols=113  Identities=8%  Similarity=-0.077  Sum_probs=87.5

Q ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhcccCCC
Q 016124          104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---AEEAVELYKKALRVIKDSNYMSL  180 (394)
Q Consensus       104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~  180 (394)
                      .+++..+...+++++|++.|++++.+        +|....+++++|.++...++   +++|+..+++++..       . 
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-------~-   66 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------G-   66 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------S-
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-------c-
Confidence            35677888999999999999999987        45556689999999987554   45688888887752       1 


Q ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q 016124          181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  240 (394)
Q Consensus       181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  240 (394)
                      ..+....+++++|.+|...|++++|+.+|++++++        .|....+...++.+...
T Consensus        67 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHH
Confidence            23444567899999999999999999999999986        45555666555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.8e-11  Score=76.63  Aligned_cols=88  Identities=14%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      ++-++.+|.+++..|+|++|+.+|++|+++.+... ...+..+.++.++|.++...|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34578999999999999999999999999876532 233466789999999999999999999999999998        


Q ss_pred             CcchHhhhHhHHHHHHH
Q 016124           96 SADLVLPLFSLGSLFIK  112 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~  112 (394)
                      .|....++.+++.+...
T Consensus        76 ~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHH
Confidence            46666788887665443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-10  Score=73.43  Aligned_cols=87  Identities=13%  Similarity=0.002  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124          143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  222 (394)
Q Consensus       143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  222 (394)
                      ..++.+|.++...|+|++|+..|++|+++....   ....+....++.++|.++...|++++|+.++++++++       
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~---~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEG---EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh---hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-------
Confidence            456799999999999999999999999988764   2223344678899999999999999999999999987       


Q ss_pred             CCccHHHHHHHHHHHHHH
Q 016124          223 EHPSFVTHLLNLAASYSR  240 (394)
Q Consensus       223 ~~~~~~~~~~~la~~~~~  240 (394)
                       +|....++.+++.+...
T Consensus        76 -~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          76 -DPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             -CTTCHHHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHH
Confidence             45666788888765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=1.2e-10  Score=81.75  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh----------hchhHHHHHHHHHHHHHHHhc
Q 016124           23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----------GRAKKAVEIYHRVITILELNR   92 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~   92 (394)
                      +..+.+.+.|++|+..|++++++        +|..+.++..+|.++...          +.+++|+..|++++++     
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----   70 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----   70 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             hHHHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----
Confidence            44567788999999999999987        355677889999998855          4457888888888887     


Q ss_pred             CCCCcchHhhhHhHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 016124           93 GTESADLVLPLFSLGSLFIKEGK-----------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  152 (394)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  152 (394)
                         +|....+++++|.+|..+|+           +++|..+|++++++        +|....++..++.+.
T Consensus        71 ---~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          71 ---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             ---cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHH
Confidence               67778899999999988764           57777777777776        344444555566553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=4.2e-10  Score=78.97  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=72.2

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh----------CcHHHHHHHHHHHHHHHHHhhCC
Q 016124           67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----------GKAVDAESVFSRILKIYTKVYGE  136 (394)
Q Consensus        67 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  136 (394)
                      .+.+.+.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            456788899999999999998        678889999999999865          4457888888888876       


Q ss_pred             CchHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
Q 016124          137 NDGRVGMAMCSLAHAKCANGN-----------AEEAVELYKKALRV  171 (394)
Q Consensus       137 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~  171 (394)
                       +|....++.++|.+|..+|+           +++|..+|++++++
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence             46666789999999987654           57777788887775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=3.1e-08  Score=71.72  Aligned_cols=117  Identities=10%  Similarity=-0.033  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc--------------hHHHHHHHHHHHHHHHHhhchhHHH
Q 016124           13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--------------SILLVTSLLGMAKVLGSIGRAKKAV   78 (394)
Q Consensus        13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~   78 (394)
                      ......+...|......|++++|+..|.+++.+++.....+              .+....++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34566788999999999999999999999998754221111              1345678889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124           79 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  137 (394)
Q Consensus        79 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  137 (394)
                      ..+++++..        +|....++..++.++...|++.+|+..|+++......-+|-+
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999997        677788999999999999999999999999998877665544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=6.9e-08  Score=69.87  Aligned_cols=118  Identities=11%  Similarity=-0.143  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--------------CccHHHHHHHHHHHHHHcccHHHHH
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--------------HPSFVTHLLNLAASYSRSKNFVEAE  248 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~  248 (394)
                      ......+...|......|++++|...|.+++.+.......+              .+....++.+++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34456678899999999999999999999998753221100              1123467788999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124          249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  308 (394)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  308 (394)
                      ..+++++.+        +|....++..++.++...|++.+|+..|+++.....+.+|.+.
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999984        6778889999999999999999999999999998877776653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.66  E-value=7.4e-08  Score=74.37  Aligned_cols=127  Identities=9%  Similarity=-0.071  Sum_probs=97.2

Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 016124          237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  316 (394)
Q Consensus       237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  316 (394)
                      -....|++++|+..++++++        .+|.....+..++.++...|++++|+..+++++++.        |.......
T Consensus         5 ~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~   68 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGAS   68 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHHH
Confidence            35678999999999999998        478889999999999999999999999999998864        55556677


Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124          317 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  387 (394)
Q Consensus       317 ~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  387 (394)
                      .++.++...+... +       +........-...|.....+...+.++...|++++|.+.++++.++.+.
T Consensus        69 ~l~~ll~a~~~~~-~-------a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          69 QLRHLVKAAQARK-D-------FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHH-H-------HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhccccH-H-------HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            7777766555333 2       2221111112234566677778899999999999999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.66  E-value=2.4e-08  Score=77.19  Aligned_cols=129  Identities=10%  Similarity=-0.040  Sum_probs=99.0

Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124           23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  102 (394)
Q Consensus        23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  102 (394)
                      +.-.+..|++++|+..++++++.        +|....++..++.+++..|++++|+..+++++++        .|.....
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~   66 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPG   66 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence            34567789999999999999985        4666778999999999999999999999999987        5666777


Q ss_pred             hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124          103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  174 (394)
Q Consensus       103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  174 (394)
                      ...++.++...+..+++...+.+..       -...|.....+...+..+...|++++|...+.++.+....
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            7777777766555554433222111       1124555566777899999999999999999999887543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=3.7e-05  Score=52.22  Aligned_cols=108  Identities=18%  Similarity=0.133  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124          157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  236 (394)
Q Consensus       157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  236 (394)
                      ++++|+.+|+++.+.       + +.    .+..+++.  ....++++|+.+++++.+.          ....+...||.
T Consensus         8 d~~~A~~~~~kaa~~-------g-~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL-------N-EM----FGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT-------T-CT----THHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-------C-Ch----hhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHH
Confidence            688999999998763       1 11    12234443  3456889999999988653          23457788999


Q ss_pred             HHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHH
Q 016124          237 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  298 (394)
Q Consensus       237 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  298 (394)
                      +|..    ..++++|..+|+++.+.          ....+...||.+|..    ..+..+|..+|++|.+
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            9886    46789999999999872          235677899999887    4689999999999876

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.10  E-value=1.6e-05  Score=54.04  Aligned_cols=112  Identities=9%  Similarity=-0.015  Sum_probs=81.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124          242 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  321 (394)
Q Consensus       242 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  321 (394)
                      .|+++|+.+|+++.+.       .+   ..+...|+.  ....+.++|+.+++++.+       .+++   .+.+.||.+
T Consensus         7 kd~~~A~~~~~kaa~~-------g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~-------~g~~---~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-------NE---MFGCLSLVS--NSQINKQKLFQYLSKACE-------LNSG---NGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-------TC---TTHHHHHHT--CTTSCHHHHHHHHHHHHH-------TTCH---HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-------CC---hhhhhhhcc--ccccCHHHHHHHHhhhhc-------ccch---hhhhhHHHh
Confidence            4788999999998762       22   234555653  345788999999998866       2333   467889998


Q ss_pred             HHH----hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----hcCchhhhhhHHHHHHHHH
Q 016124          322 QTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRM  386 (394)
Q Consensus       322 ~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~  386 (394)
                      |..    ..+.+ +|+++|+++.+.       .+   ..+...||.+|..    ..+.++|..+|+++.+...
T Consensus        65 y~~g~~~~~d~~-~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          65 YENGKYVKKDLR-KAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHCSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccchhhH-HHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            875    23345 888888888752       33   4567889999887    4678999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=1.5e-05  Score=52.02  Aligned_cols=73  Identities=11%  Similarity=-0.078  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124          312 GEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  389 (394)
Q Consensus       312 ~~~~~~l~~~~~~~g~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  389 (394)
                      ..+.++.|+++.+..+.+  .+|+.+++.++.       .+.....++++.||..|.+.|++++|..++++++++.|.+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            567889999998776543  155555555543       22234468999999999999999999999999999988776


Q ss_pred             Hh
Q 016124          390 QK  391 (394)
Q Consensus       390 ~~  391 (394)
                      +.
T Consensus       108 qA  109 (124)
T d2pqrb1         108 QV  109 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=0.0003  Score=45.73  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124           58 VTSLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  129 (394)
Q Consensus        58 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  129 (394)
                      ..+.++.|+++...   .+.++++.+++.++..       ++.....+++.||..|.+.|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45677788887644   5677888888887653       22344679999999999999999999999999998

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.95  E-value=0.17  Score=36.45  Aligned_cols=157  Identities=8%  Similarity=-0.066  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-ccCCC-chHHHHHHHHHHHH-----------HHHHc-CChHH--HHH-
Q 016124          145 MCSLAHAKCANGNAEEAVELYKKALRVIKDS-NYMSL-DDSIMENMRIDLAE-----------LLHIV-GRGQE--GRE-  207 (394)
Q Consensus       145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~-~~~~~~~~~~~la~-----------~~~~~-g~~~~--A~~-  207 (394)
                      ...+|.+....|+|++...+.++++++.... ..... +...+..++-+...           +-... ++-..  .+. 
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~~R~s~R~i~~ie~k~~~~~~~~~~~~~   86 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDELVKICSE   86 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            4457889999999999999999999875310 00111 12223323222211           11111 22111  111 


Q ss_pred             -----------HHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124          208 -----------LLEECLLITEKYKGKEHPS-FVTHLLNLAASYS-----RSKNFVEAERLLRICLDIMTKTVGPDDQSIS  270 (394)
Q Consensus       208 -----------~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  270 (394)
                                 .+...+.+......+ ++. .+..+-..|..|.     ..|.-++|...|++|..+....+++.+|...
T Consensus        87 y~~~i~~el~~~c~~i~~lid~~L~~-~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirL  165 (220)
T d2o8pa1          87 YVFSLRKDIKAFLQSFEDCVDRLVEK-SFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPL  165 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCC-SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence                       122223333222322 222 1222223344442     4577899999999999998887888889888


Q ss_pred             HHHHHHHHHHHh-hcChHHHHHHHHHHHHHHHH
Q 016124          271 FPMLHLGITLYH-LNRDKEAEKLVLEALYIREI  302 (394)
Q Consensus       271 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~  302 (394)
                      ....+.+..+.. .++.++|.+..++|.+.+..
T Consensus       166 GLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         166 GFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  198 (220)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            877888876655 79999999999988554443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.96  E-value=0.59  Score=26.85  Aligned_cols=40  Identities=10%  Similarity=0.050  Sum_probs=33.6

Q ss_pred             CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh
Q 016124           11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY   50 (394)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   50 (394)
                      .|-+.+..+...+.-+...|.|++|+++++++........
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~   42 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM   42 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            3456778888999999999999999999999988776543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.34  E-value=1.8  Score=31.33  Aligned_cols=185  Identities=14%  Similarity=0.110  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124           17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTE   95 (394)
Q Consensus        17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~   95 (394)
                      .-+..+|.+....++|++.+.+..+++....   +++  ....-.+.+..+|- ..|....+...+....... .  +..
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~---~~~--Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~-~--~~~   76 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLG---SEE--LTVEERNLLSVAYKNVIGARRASWRIISSIEQKE-E--SRG   76 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCS---SSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--TTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC---CCC--CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-H--ccC
Confidence            4466788888999999999999998876521   111  00111222233332 2233344444443322111 1  111


Q ss_pred             CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC--CCchH-HHHHHHHHHHHHHH-----CCC-----HHHHH
Q 016124           96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG--ENDGR-VGMAMCSLAHAKCA-----NGN-----AEEAV  162 (394)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~-~~~~~~~la~~~~~-----~g~-----~~~A~  162 (394)
                      .+....    +..-|.. .=-++=...+...+++....+-  ..++. .+..+...|..|..     .|+     -+.|.
T Consensus        77 ~~~~~~----~i~~yk~-kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          77 NEEHVN----SIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             CHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             ChHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            111111    1111111 0112233445555555443211  11222 22333344554432     222     45788


Q ss_pred             HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 016124          163 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEGRELLEECLLIT  216 (394)
Q Consensus       163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~  216 (394)
                      ..|++|..+....  ..|.+|.......|.+..++. .|+.++|..+.++++...
T Consensus       152 ~aY~~A~~~a~~~--l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         152 TAYKAAQDIATTE--LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999988764  567777777777788877765 589999999888887654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.01  E-value=2  Score=31.13  Aligned_cols=185  Identities=14%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  139 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  139 (394)
                      +..+|.+....++|++...+.+++++..    + +......=.+.+..+|-. .|....+...+....... .  +..++
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~~----~-~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~-~--~~~~~   78 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNSL----G-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE-E--SRGNE   78 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTC----S-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--TTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhc----C-CCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-H--ccCCh
Confidence            5567888888999999999999887641    0 111111222233333322 233333444433222111 1  11122


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc-CCCchHHHHHHHHHHHHHHHHc-----CC-----hHHHHHH
Q 016124          140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY-MSLDDSIMENMRIDLAELLHIV-----GR-----GQEGREL  208 (394)
Q Consensus       140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~-----g~-----~~~A~~~  208 (394)
                      .....    ..-|. ..=-++=..++..++++...... ...++......+...|..|.-.     |+     .+.|...
T Consensus        79 ~~~~~----i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~a  153 (236)
T d1o9da_          79 EHVNS----IREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTA  153 (236)
T ss_dssp             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHH
Confidence            21111    11110 00012223344555554433210 1122233333334455555432     22     4578899


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHH
Q 016124          209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIM  258 (394)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~  258 (394)
                      |++|..+......+.+|.......|.+..+.. .|+.++|.++.+++++-.
T Consensus       154 Y~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         154 YKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999888888888887777777777665 599999999888887643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.75  E-value=0.82  Score=26.24  Aligned_cols=39  Identities=10%  Similarity=-0.003  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124          183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  221 (394)
Q Consensus       183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  221 (394)
                      -..+..+...|.-+...|+|++|+++.+++.........
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k   43 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            344556677888899999999999999999988776654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=3.6  Score=33.34  Aligned_cols=199  Identities=12%  Similarity=-0.002  Sum_probs=116.5

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124          149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  228 (394)
Q Consensus       149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  228 (394)
                      +..-....+.+.|...+.......      .............++......+..+.+..++......        .....
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--------~~~~~  286 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQ------QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTS  286 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhcc------cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--------ccchH
Confidence            333344567777877776654422      2233334444445555555567777777776654321        12222


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH-------HH
Q 016124          229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-------RE  301 (394)
Q Consensus       229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~  301 (394)
                      .....++ .....+++..+...+...        ...........+-+|..+...|+.++|..+|..+..-       ..
T Consensus       287 ~~~w~~~-~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa  357 (450)
T d1qsaa1         287 LIERRVR-MALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAA  357 (450)
T ss_dssp             HHHHHHH-HHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred             HHHHHHH-HHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHH
Confidence            2222233 345668888877776542        2233445677789999999999999999999986541       11


Q ss_pred             HHcCCCC----------h---hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 016124          302 IAFGKDS----------L---PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  368 (394)
Q Consensus       302 ~~~~~~~----------~---~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  368 (394)
                      ..+|...          +   .........+..+...|+.. .|...+..++.       ..++.   -...++.+..+.
T Consensus       358 ~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~-~A~~e~~~l~~-------~~~~~---~~~~la~lA~~~  426 (450)
T d1qsaa1         358 QRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDN-TARSEWANLVK-------SKSKT---EQAQLARYAFNN  426 (450)
T ss_dssp             HHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHH-HHHHHHHHHHT-------TCCHH---HHHHHHHHHHHT
T ss_pred             HHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCch-HHHHHHHHHHh-------CCCHH---HHHHHHHHHHHC
Confidence            1122110          0   00111234466677888888 88777765542       22333   345678889999


Q ss_pred             cCchhhhhhHHHH
Q 016124          369 GRKEEKFPLKKRL  381 (394)
Q Consensus       369 g~~~~A~~~~~~a  381 (394)
                      |.++.|+....++
T Consensus       427 g~~~~aI~a~~~~  439 (450)
T d1qsaa1         427 QWWDLSVQATIAG  439 (450)
T ss_dssp             TCHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHH
Confidence            9999998776654

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=88.90  E-value=2.9  Score=29.83  Aligned_cols=186  Identities=9%  Similarity=0.020  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124           19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTESA   97 (394)
Q Consensus        19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~   97 (394)
                      ...+|.+....|+|++...+.++++.+.......-+.   .-.+.+..+|- ..|....+......   +-++ . ....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~---eERnLLsvayKn~i~~~R~s~R~i~~---ie~k-~-~~~~   78 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQ---EQTK-Q-LNND   78 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-S-CSCH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH---HHHHHHHHHHHHHHhhhHHHHHHHHH---HHHh-h-ccch
Confidence            4557899999999999999999999875421111111   11222233331 12333334333322   1111 1 1111


Q ss_pred             chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHH
Q 016124           98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVI  172 (394)
Q Consensus        98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~  172 (394)
                      ...    .+..-|.. .=-.+-...+...+.+....+.++.......+-..|..|.     ..|.-++|...|++|..+.
T Consensus        79 ~~~----~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia  153 (220)
T d2o8pa1          79 ELV----KICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL  153 (220)
T ss_dssp             HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            111    11111111 1123345566666776666654432222223333444442     4788899999999999988


Q ss_pred             HhcccCCCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHh
Q 016124          173 KDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKY  219 (394)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~  219 (394)
                      ...  .+|.+|.......|.+..++ -.++.++|.++.+.|.+.+...
T Consensus       154 ~~~--l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdea  199 (220)
T d2o8pa1         154 CEH--PDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQ  199 (220)
T ss_dssp             HHC--GGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--CCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            764  45666666666677776655 4789999999999886554443

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=87.04  E-value=2.9  Score=29.85  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 016124          158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEGRELLEECLLITE  217 (394)
Q Consensus       158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~  217 (394)
                      .++|...|++|+++........|.+|.......|.+..|+. .++.++|..+.+++.+...
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~  183 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAE  183 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            36788999999998876433456677766666777777765 7999999999999887543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.09  E-value=5.1  Score=28.77  Aligned_cols=58  Identities=12%  Similarity=-0.029  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHH
Q 016124          286 DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQE  344 (394)
Q Consensus       286 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~A~~~~~~al~~~~  344 (394)
                      .+.|...|++|+.+....+.|.||-......+.+..+.. .|+.+ +|.+..+++++-..
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~-~A~~lak~afd~ai  200 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPE-KACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence            357999999999999888889899877776777766554 56666 99999998886553

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.59  E-value=6  Score=28.38  Aligned_cols=181  Identities=14%  Similarity=0.069  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhC-CCc
Q 016124           61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYG-END  138 (394)
Q Consensus        61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~  138 (394)
                      +..++.+....++|++...+.+++...       +......=.+.+..+|-. .|....+...+....+   +..+ ...
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~---k~~~~~~~   75 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQ-------GAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQ---KTEGAEKK   75 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C------C
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHcCcchh
Confidence            456788888999999999999988765       111222222233333322 2333333333322111   1000 011


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc-CCCchHHHHHHHHHHHHHHHHcC----------ChHHHHH
Q 016124          139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY-MSLDDSIMENMRIDLAELLHIVG----------RGQEGRE  207 (394)
Q Consensus       139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~  207 (394)
                      .....       -|. ..=-++=...+...+++...... ...++......+...|..|.-.-          -.+.|..
T Consensus        76 ~~~i~-------~yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~  147 (230)
T d2o02a1          76 QQMAR-------EYR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQ  147 (230)
T ss_dssp             HHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             hHHHH-------HHH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHH
Confidence            11111       110 00012223444555554433211 11223333333444566554332          1347899


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHH
Q 016124          208 LLEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~  259 (394)
                      .|++|+.+......+.+|.......|.+..+ .-.|+.++|.+..+++++-..
T Consensus       148 aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai  200 (230)
T d2o02a1         148 AYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999998888888888777666666655 457999999999999887543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=82.33  E-value=11  Score=30.35  Aligned_cols=166  Identities=10%  Similarity=-0.054  Sum_probs=92.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124          195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  274 (394)
Q Consensus       195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (394)
                      .-....+.+.|...+......    ..............++......+..+.+...+.....        ........ .
T Consensus       223 ~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~-~  289 (450)
T d1qsaa1         223 ASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--------RSQSTSLI-E  289 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--------TCCCHHHH-H
T ss_pred             HHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc--------cccchHHH-H
Confidence            333445667777666554321    1111222233333444444555667777777665543        11122222 2


Q ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------HHhhc
Q 016124          275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI-------QEREF  347 (394)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~-------~~~~~  347 (394)
                      .++......+++..+...+...        .+.........+.+|..+...|+.+ +|...|..+..-       ....+
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~-~A~~~~~~~a~~~~fYG~LAa~~L  360 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREA-EAKEILHQLMQQRGFYPMVAAQRI  360 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSCSHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChh-hHHHHHHHHhcCCChHHHHHHHHc
Confidence            2233445678888877766542        2333455677899999999999988 999999887531       11111


Q ss_pred             CCC-------------CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124          348 GSE-------------SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  382 (394)
Q Consensus       348 ~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  382 (394)
                      |..             ..-....-...+..+...|+..+|...+..++
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~  408 (450)
T d1qsaa1         361 GEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV  408 (450)
T ss_dssp             TCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            211             11111222345677888899999988776654

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=80.42  E-value=7.8  Score=27.53  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHH
Q 016124          203 QEGRELLEECLLITEKYK--GKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT  259 (394)
Q Consensus       203 ~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~  259 (394)
                      ++|...|++|+++.....  .|.||-......|.+..|. -.+++++|.++.+.+.+...
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~  183 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAE  183 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            568899999999887743  3667776666667766665 47999999999998887443