Citrus Sinensis ID: 016127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Secondary Structure (PSIPRED)
cccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccccccccccccHcccccccccHEEEEEEEEccccccHcccHcccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHEccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlqmhlsssfslkyhplqkagciktlespvthihgVLNRSQEKKYAIKCSQSNSFYNLTNkiassrnckpfnshrapvtlqdgyasksedddhsnSFLNVFLKKFHALYRFMRAYACAGVIIAttsnsllpvqtladltpAYFTGLMEALVPAVLMHIYVVAINQlsdvevdkvnkpylplasgeismGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAysvqlpllrwkgnSFLAAFCMVSLNGLLTQFPVYVHIQKYvlgrpleiftrplMFATAFISCFCVVIAFIKdlhdvdgdkkfGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Flexible Loop (DISEMBL)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINqlsdvevdKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Low Complexity Region (SEG)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYgaavvvgassPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Disordered region (IsUnstruct)
***********LKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKI*********************************SFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK*****
Disordered Region (DISOPRED)
******************************************************************************************************KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Disordered Region (DISEMBL)
********SFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGY********HSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Disordered Region (DISPRO)
****HLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLT*K*********************************NSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.776	0.778	0.490	5e-83
B7FA90	404	Probable homogentisate ph	yes	no	0.799	0.779	0.451	4e-75
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.736	0.707	0.422	2e-67
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.715	0.689	0.402	2e-58
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.738	0.753	0.313	9e-28
Q0D576	379	Probable homogentisate ph	no	no	0.588	0.612	0.346	3e-24
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.357	0.510	0.302	4e-08
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.477	0.683	0.288	5e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.347	0.496	0.337	1e-07
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.385	0.540	0.290	5e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  308 bits (789), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 151/308 (49%), Positives = 216/308 (70%), Gaps = 2/308 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEIT 372

Query: 382 SFYMFIWK 389
           S YMFIWK
Sbjct: 373 SCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  281 bits (720), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 209/319 (65%), Gaps = 4/319 (1%)

Query: 74  HRAPVTLQD--GYASKSEDDDH-SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLL 130
           HR   +  D  G   +S  + H S+S          A YRF R +   G  ++  S SLL
Sbjct: 74  HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133

Query: 131 PVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGT 190
            V+ L+D++P + TGL+EA+V A+ M+IY+V +NQL D+E+DKVNKP LPLASGE S  T
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193

Query: 191 GIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250
           G+A+  A A MS      + S P   A+     +GTAYS+ LP LRWK ++ +AA C+++
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILA 253

Query: 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFG 310
           +  ++ Q   ++HIQ +V  RP  +FTRPL+FATAF++ F VVIA  KD+ D++GD+ FG
Sbjct: 254 VRAVIVQLAFFLHIQTFVFRRP-AVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312

Query: 311 IKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVR 370
           IK+ SV LG+++VF + V +L +AY  A+++GA+S  L +K  T++GH ILA+I W R R
Sbjct: 313 IKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSR 372

Query: 371 AVDLSDNASILSFYMFIWK 389
           ++DL+   +I SFYMFIWK
Sbjct: 373 SIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 92  DHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALV 151
           D  N  L++F       Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V
Sbjct: 108 DSVNDALDIF-------YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVV 160

Query: 152 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS 211
             + +HI+ V +NQL D+E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S
Sbjct: 161 AVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDS 220

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR 271
            P  W V     V +AY+V LPLLRWK    L A   ++   +      ++H+Q  V  R
Sbjct: 221 WPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKR 280

Query: 272 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSML 331
           P   F RPL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L
Sbjct: 281 P-TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLL 339

Query: 332 SIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
            + YG  ++VGA+SP L +K+IT++GH +LAS+ W   ++VDL+ N  + SFYMFIWK
Sbjct: 340 EMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 176/283 (62%), Gaps = 1/283 (0%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A Y F   Y   G+ +   S+SLL V+ L+D++ ++  G+++ ++P + + IY+  +NQL
Sbjct: 115 AFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
            D+E+DK+NKP+LP+ASG+ S  TG+ I+ A   +S  +  +  S P I  ++      T
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ +PLLRWK   F+AA CM+S   L      + H+Q  VL RP+  F R L F  AF
Sbjct: 235 AYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIG-FPRSLGFLVAF 293

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP 346
           ++ + + +A  KD+ DV+GDK+ GI + +V LG++R F + VS   +A+G  ++ GAS  
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCS 353

Query: 347 FLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
               K+ T +G+ +LASI W + ++VDLSD AS  SFYMFIWK
Sbjct: 354 HFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 18/309 (5%)

Query: 88  SEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGL- 146
           +E DD     L+   +  +A +RF+R +   G  + +T+   L  + L + T      L 
Sbjct: 77  AESDD---PVLDRIARFQNACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLV 130

Query: 147 ---MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 203
              +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L
Sbjct: 131 LKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL 190

Query: 204 AYAVMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262
              V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY 
Sbjct: 191 -LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY- 246

Query: 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           H  +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   
Sbjct: 247 HATRAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRN 305

Query: 323 VFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI 380
           +  L   +L + Y +A+ +    P +    + I  H ILAS    +   ++ ++    +I
Sbjct: 306 IAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAI 365

Query: 381 LSFYMFIWK 389
             +Y FIW 
Sbjct: 366 SGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 16/248 (6%)

Query: 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG--IAITLASALMSLAYA 206
            LV  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ T   + +  A+A  S+   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI--- 185

Query: 207 VMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
           V+    PFI ++    +F+GT YSV  P  R K     A   + ++ G L  F VY +  
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YAT 242

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325
           +  LG   + ++ P+ F T F++ F +VIA  KDL DV+GD+K+ I TL+  LG   +  
Sbjct: 243 RAALGLTFQ-WSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 301

Query: 326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASIL 381
           L   +L   Y AA+ V    P    + + +  H  LA   IF  W+  +A    D  +I 
Sbjct: 302 LGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKD--AIS 359

Query: 382 SFYMFIWK 389
            +Y FIW 
Sbjct: 360 QYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 21/162 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+D++N+P  PL  G +   T +  +L    + LA A++I    F +A++A+I
Sbjct: 56  INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +AA   V+        P+Y  I    +G          + 
Sbjct: 116 TM-FLYAWKLKPLPFIGNIAVAALTGVT--------PLYGAIAVGKIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
            T  +  F V +A   +KD+ DV+GD K G KTL ++LG+ +
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 30/218 (13%)

Query: 116 ACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN 175
           A  G +IATT             TP +F  L+  +V  +    YV  IN + D+EVDK+N
Sbjct: 22  AFMGYVIATTWK----------FTPLFFLPLL--VVSLIAAGGYV--INDVYDIEVDKIN 67

Query: 176 KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLL 235
           KP  PL SG I++      ++    + L  ++ +   PF +A+I  + +   Y+  L  L
Sbjct: 68  KPERPLPSGRIAVNIARRFSIVLFAVGLIISIPLGLIPFGFALITIVLL-YEYARSLKKL 126

Query: 236 RWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIA 295
              GN       +V+L   L+ +  Y  +     G  L  F  P    T +I  F +   
Sbjct: 127 GLVGN------FIVALTSALSAY--YGGLAS---GSLLGNFIIP----TIYIFFFTLSRE 171

Query: 296 FIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333
           F+K + D++GDK+ G+ TL+V LG++  + ++  +L I
Sbjct: 172 FVKGIEDIEGDKRNGVNTLAVKLGEKSTWIIAKIILGI 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 29/166 (17%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASAL--MSLAYAVMIRSPPFIWAVIA 220
           IN   D E+DK+N+P  PL  G  +MG  +A+  +  L  + LA A MI    FI  VIA
Sbjct: 56  INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113

Query: 221 WI--FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           ++  F+   Y+ +L  L + GN  +A        GL    P+Y  +    LG        
Sbjct: 114 YVTMFI---YAWKLKPLPFVGNIVVA--------GLTGATPLYGAVAVEHLG-------- 154

Query: 279 PLMFATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
             +     I  F V +A   IKD+ DV+GD   G KTL ++ GK+R
Sbjct: 155 --LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 20/172 (11%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           AIN   D E+D +NKPY P+ SG IS    + I +A +L  +A ++ +    FI  +I  
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL---GFIEFLIVT 110

Query: 222 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM 281
            F  + Y+      RW   + +    +VSL    T   ++  +    L   + IF+    
Sbjct: 111 AFSLSWYAYA----RWLKRTGVPGNALVSLGVAFTL--IFGSLAAGNLTNKVIIFS---- 160

Query: 282 FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER----VFRLSVS 329
            + AF S    +  F+K + D+ GD+  G++T++V +G +R    VF LS++
Sbjct: 161 -SVAFTSNL--IREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGILVFLLSLA 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
224143266	284	predicted protein [Populus trichocarpa]	0.718	0.996	0.566	3e-86
296082088	398	unnamed protein product [Vitis vinifera]	0.906	0.896	0.451	2e-85
359476155	397	PREDICTED: probable homogentisate phytyl	0.903	0.896	0.447	7e-85
219842170	411	homogentisate geranylgeranyl transferase	0.936	0.897	0.471	7e-85
295656253	401	homogentisate geranylgeranyl transferase	0.964	0.947	0.463	4e-84
185487419	407	homogentisate phytyltransferase [Manihot	0.878	0.850	0.461	2e-82
377657555	394	homogentisate phytyltransferase [Brassic	0.736	0.736	0.508	2e-81
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.776	0.778	0.490	3e-81
297836742	393	predicted protein [Arabidopsis lyrata su	0.776	0.778	0.487	4e-81
171190284	317	homogentisate geranylgeranyl transferase	0.725	0.902	0.536	5e-81

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 161/284 (56%), Positives = 211/284 (74%), Gaps = 1/284 (0%)

Query: 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQ 165
           H+ Y+F R +   G +I  TS SLLPV+T+++L+P +F GL++ALVP+VLM+IYVV +NQ
Sbjct: 2   HSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQ 61

Query: 166 LSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG 225
           L DVE+DKVNKPYLPLASG+ SMGTG+AI  AS L S A  +M +SP    A++    +G
Sbjct: 62  LFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLG 121

Query: 226 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATA 285
           + YS++LP LRWK  +FLAA C++ +  ++ Q   +VH+QK+VLG+   + TR L+FATA
Sbjct: 122 SVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKT-TVVTRSLVFATA 180

Query: 286 FISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASS 345
           F+  F  VIA  KD+ DVDGD+ +GI++ SV LG+ERVF L V+ML IAYGAAVVVGASS
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 346 PFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
            FL +K ITI+GH  LA I WLR R+VDL+   SI SFYMFIWK
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/379 (45%), Positives = 243/379 (64%), Gaps = 22/379 (5%)

Query: 20  AGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH-RA 76
           AGC++  +  V   H  L           C  SN F   +   +SS N +   F SH R 
Sbjct: 3   AGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSHKRN 53

Query: 77  P--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQT 134
           P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP++T
Sbjct: 54  PIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 135 LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194
           ++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 195 TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254
              S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +  +
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAI 226

Query: 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTL 314
           + Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI++ 
Sbjct: 227 VVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSF 285

Query: 315 SVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDL 374
           +V LG+++VF L V+ML +AYGAA V+GASS  +  K  T+  H  LA + W+R ++VDL
Sbjct: 286 TVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDL 345

Query: 375 SDNASILSFYMFIWKASDS 393
           S   ++ SFYMFIWKAS+S
Sbjct: 346 SSKEAVTSFYMFIWKASES 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 169/378 (44%), Positives = 241/378 (63%), Gaps = 22/378 (5%)

Query: 17  LQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH 74
           LQ+ GC++  +  V   H  L           C  SN F   +   +SS N +   F SH
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSH 74

Query: 75  -RAP--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLP 131
            R P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP
Sbjct: 75  KRNPIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           ++T++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
             I   S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
             ++ Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGI 306

Query: 312 KTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA 371
           ++ +V LG+++VF L V+ML +AYGAA V+GASS  +  K  T+  H  LA + W+R ++
Sbjct: 307 QSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQS 366

Query: 372 VDLSDNASILSFYMFIWK 389
           VDLS   ++ SFYMFIWK
Sbjct: 367 VDLSSKEAVTSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  320 bits (820), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 185/392 (47%), Positives = 250/392 (63%), Gaps = 23/392 (5%)

Query: 13  KYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAI---------KCSQSNSFYNLTN-KI 62
           KY  L   G + T+      ++ +L  S  KK  I         K S+    Y L N +I
Sbjct: 15  KYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYVLRNLRI 73

Query: 63  ASSRNCKPFNSHRAPVTLQDGY-ASKSEDDDH--SNSFLNVFLKKFHALYRFMRAYACAG 119
            + +N  P       + LQ+ + A  SED D   S+S     L+  ++LY+F R +   G
Sbjct: 74  LTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179
            II  TS SLLPV+T+ DL+P YF GL++ALVP+VLM+IYVV +NQL DVE+DKVNKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKG 239
           PLASG+ SM TGI I  AS L+SL   +  +SPP + A++    +G+ YS++LP LRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 240 NSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 299
           ++FLAA C++ +  ++ Q   +VHIQK+VLG+ + I  R LMFATAF+  F   IA  KD
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFI-PRSLMFATAFMCFFSAAIALFKD 306

Query: 300 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP--FLANKLITIIG 357
           + DV+GD+ +GI++ SV LG+ERV  L V+ML +AYGAAVV GASSP   L  KLIT+IG
Sbjct: 307 IPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIG 366

Query: 358 HGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
           H  +A I W++ + VDL+   SI SFYMFIWK
Sbjct: 367 HSTIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 184/397 (46%), Positives = 250/397 (62%), Gaps = 17/397 (4%)

Query: 1   MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNL-- 58
           M+Q H     S +       G I  L+ P  H+    N +  KK ++     +S  N+  
Sbjct: 1   MIQAHNHPFVSCRLQNPPNQGLITLLQRPQRHLK-FSNGNTAKKLSV-----HSCVNILA 54

Query: 59  -TNKIASSRNCKPFNSHRAPV-----TLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFM 112
            T  I+SSR+ KP    + P      TL+  +  +S+DD  +        +K  A YRF 
Sbjct: 55  ATLSISSSRS-KPTRGKKLPGQTLCGTLEHEFVIESKDDQLT-LLQGDLWRKIDAFYRFS 112

Query: 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172
           R +   G II  TS SLLP+ ++ DL+PA+F G ++AL+P++ M+IYVV +NQL DVE+D
Sbjct: 113 RPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEID 172

Query: 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQL 232
           KVNKP LPLASGE SMG G AI  A  LMS A  ++ +SPP  +A++     G+AYSV+L
Sbjct: 173 KVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVEL 232

Query: 233 PLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 292
           PLLRWK N+FLAAF ++ +  +      + HIQKYVLGRP+ +F R L FAT  IS F  
Sbjct: 233 PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPM-VFPRSLCFATVCISMFTT 291

Query: 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKL 352
           VIA  KD+ DVDGD+ FGI++ SV LG++RVF L + +L IAY +A+V+GASS FL +KL
Sbjct: 292 VIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKL 351

Query: 353 ITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
           +T+IGH  LASI W R  +V+L DN+S+ SFYM IWK
Sbjct: 352 VTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/349 (46%), Positives = 231/349 (66%), Gaps = 3/349 (0%)

Query: 42  EKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHS-NSFLNV 100
           E+ Y  K       ++L + +  S   +  ++H   V    G   +SE D +S  S  N 
Sbjct: 48  ERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFL-VHATSGQPLESEPDAYSPKSTSNS 106

Query: 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYV 160
            L    A YRF R +   G  ++  S SLL V+ L+DL+P +FTG++EA+V A+LM+IY+
Sbjct: 107 ILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEAVVAALLMNIYI 166

Query: 161 VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 220
           V +NQL+D+E+DKVNKPYLPLASGE S+G G+ I  + ++MS     ++ S P  WA+  
Sbjct: 167 VGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVVGSWPLFWALFV 226

Query: 221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +GTAYS+ LPLLRWK  +F+AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL
Sbjct: 227 SFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVYGRP-AVFSRPL 285

Query: 281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340
           +FATAF+S F VVIA  KD+ D++GDK FGI++ +V LG+ERVF   +S+L IAYG A++
Sbjct: 286 IFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWTCISLLEIAYGVAIL 345

Query: 341 VGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
           VGA+S    +K IT++GH ILASI W R ++VDL   A+I S YMFIWK
Sbjct: 346 VGAASSHTWSKCITVLGHAILASILWNRAKSVDLKSKAAITSCYMFIWK 394

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/291 (50%), Positives = 209/291 (71%), Gaps = 1/291 (0%)

Query: 99  NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
           N F     A YRF R +   G +++  S S L V+ ++D++P  FTG++EA+V A++M+I
Sbjct: 92  NSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNI 151

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
           Y+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS     ++ S P  WA+
Sbjct: 152 YIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWAL 211

Query: 219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTR
Sbjct: 212 FVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPV-MFTR 270

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338
           PL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG+ERVF   VS+L +AY  A
Sbjct: 271 PLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWTCVSLLQMAYAVA 330

Query: 339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
           ++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I S YMFIWK
Sbjct: 331 ILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIWK 381

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/308 (49%), Positives = 216/308 (70%), Gaps = 2/308 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEIT 372

Query: 382 SFYMFIWK 389
           S YMFIWK
Sbjct: 373 SCYMFIWK 380

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/308 (48%), Positives = 216/308 (70%), Gaps = 2/308 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D +NS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-ANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   +S+L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCISLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEIT 372

Query: 382 SFYMFIWK 389
           S YMFIWK
Sbjct: 373 SCYMFIWK 380

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/287 (53%), Positives = 206/287 (71%), Gaps = 1/287 (0%)

Query: 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVA 162
           +K  A YRF R +   G I+  TS SLLP+ +  DL+PA+F GL++ ++P V ++IYVV 
Sbjct: 19  RKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVG 78

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           +NQL DVE+DKVNKP LP+ASGE SM TG AI  A  LMS+   +M +SPP ++ ++   
Sbjct: 79  LNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCF 138

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
           F GTAYS+ +PL RWK N+FLAA C+V +  +  Q  V+ HIQ+YVLGRP+ +F+R L F
Sbjct: 139 FFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPV-LFSRSLAF 197

Query: 283 ATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342
           A   ++ F  VIA  KD+ DVDGD+ FGI+T++V LGK+RVF L +++L IAYG+AVV+G
Sbjct: 198 AIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIG 257

Query: 343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
           +SS  L +KL+T+ GH ILASI W R  +VDL  N SI SFYMFIWK
Sbjct: 258 SSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.769	0.770	0.478	1.2e-74
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.873	0.845	0.376	2.7e-61
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.710	0.682	0.416	2.4e-60
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.692	0.694	0.335	3.7e-32
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.469	0.478	0.230	0.00058

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 146/305 (47%), Positives = 207/305 (67%)

Query:    85 ASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT 144
             A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P  FT
Sbjct:    78 AGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 136

Query:   145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204
             G++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS  
Sbjct:   137 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFW 196

Query:   205 YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264
                ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HI
Sbjct:   197 LGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 256

Query:   265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVF 324
             Q +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++RVF
Sbjct:   257 QTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query:   325 RLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFY 384
                V++L +AY          PF+ +K+I+++GH ILA+  W R ++VDLS    I S Y
Sbjct:   316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375

Query:   385 MFIWK 389
             MFIWK
Sbjct:   376 MFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 132/351 (37%), Positives = 202/351 (57%)

Query:    42 EKKY-AIKCSQSN--SFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFL 98
             +K+Y A+  S+ N    Y +    ++S+ C+      A       Y  ++ D  +    +
Sbjct:    48 QKEYCAVIFSRHNLKQHYKVNEGGSTSKECEKKYVVNAISEQSFEYEPQARDPKNIWGSV 107

Query:    99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
             N  L  F   Y+F R YA   V++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI
Sbjct:   108 NDALDTF---YKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHI 164

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
             + V +NQL D+E+DK+NKP LPLASG +S    + IT +S ++ L +A ++ S P  W V
Sbjct:   165 FDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTV 224

Query:   219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                     AY+V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F R
Sbjct:   225 FICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTT-FPR 283

Query:   279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXX 338
             PL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L +AY   
Sbjct:   284 PLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVT 343

Query:   339 XXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
                    P L +K+IT++GH ILAS+ W   ++ DL+ N  + SFYMFIWK
Sbjct:   344 ILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 117/281 (41%), Positives = 178/281 (63%)

Query:   109 YRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSD 168
             Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D
Sbjct:   118 YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCD 177

Query:   169 VEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY 228
             +E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S P  W V     V +AY
Sbjct:   178 IEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAY 237

Query:   229 SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFIS 288
             +V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S
Sbjct:   238 NVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVS 296

Query:   289 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXXXXXXXPFL 348
              + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L + Y          P L
Sbjct:   297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPIL 356

Query:   349 ANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389
              +K+IT++GH +LAS+ W   ++VDL+ N  + SFYMFIWK
Sbjct:   357 WSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 98/292 (33%), Positives = 153/292 (52%)

Query:   106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI----YVV 161
             +A +RF+R +   G  + +T+   L  + L + T      L+   +  +L  I    Y+V
Sbjct:    99 NACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLVLKALSGLLALICGNGYIV 155

Query:   162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
              INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   V     PFI ++ + 
Sbjct:   156 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLL-VVGFNFGPFITSLYSL 214

Query:   222 -IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +F+GT YSV  P LR K     A   + ++ G L  F VY H  +  LG P + ++ P+
Sbjct:   215 GLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQ-WSAPV 270

Query:   281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXX 340
              F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   +  L   +L + Y     
Sbjct:   271 AFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAIS 330

Query:   341 XXXXXPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASILSFYMFIW 388
                  P +    + I  H ILAS  IF  W+  +A + +  A I  +Y FIW
Sbjct:   331 LAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEA-ISGYYRFIW 380

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
 Identities = 48/208 (23%), Positives = 84/208 (40%)

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWA- 217
             Y   IN   D ++D +N+PY P+ SG IS    I       L  L  A ++     +WA 
Sbjct:   150 YTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILD----VWAG 205

Query:   218 ----VIAWIFVG---TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
                  + ++ +G    +Y    P L+ K N ++  F   +L       P +     +   
Sbjct:   206 HTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGNF---ALGASYISLPWWAGQALFGTL 262

Query:   271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330
              P ++    L+++ A +      IA + D   V+GD+  G+++L V  G E    + V  
Sbjct:   263 TP-DVVVLTLLYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGA 316

Query:   331 LSIAYXXXXXXXXXX--PFLANKLITII 356
             + I              P+ A  L+ +I
Sbjct:   317 IDITQLSVAGYLLASGKPYYALALVALI 344


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      394       384   0.00091  117 3  11 22  0.44    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  236 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.89u 0.13s 31.02t   Elapsed:  00:00:01
  Total cpu time:  30.90u 0.13s 31.03t   Elapsed:  00:00:01
  Start:  Fri May 10 10:46:02 2013   End:  Fri May 10 10:46:03 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-124
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-66
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-22
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-18
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-13
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	3e-12
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	5e-11
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-10
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	8e-09
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-07
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	8e-07
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	4e-06
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	9e-06
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	1e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	7e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.001
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  359 bits (924), Expect = e-124
 Identities = 150/268 (55%), Positives = 206/268 (76%), Gaps = 1/268 (0%)

Query: 122 IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181
           +  TS SLL V++L+D +P +FTGL+EALVPA+LM+IY+V +NQL D+E+DKVNKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 241
           ASGE S+ TG+AI  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK ++
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 242 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 301
             AA C++++  ++ Q   ++H+Q +VLGRP  +FTRPL+FATAF+  F VVIA  KD+ 
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAFMCFFSVVIALFKDIP 179

Query: 302 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGIL 361
           DV+GD+ FGI++ SV LG++RVF L V++L +AY AA++VGASS FL +K+IT++GHGIL
Sbjct: 180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGIL 239

Query: 362 ASIFWLRVRAVDLSDNASILSFYMFIWK 389
           ASI W R ++VDLS  A+I SFYMFIWK
Sbjct: 240 ASILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  213 bits (544), Expect = 1e-66
 Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 18/303 (5%)

Query: 94  SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-------L 146
             + L       +AL++F R +     II T S S+L +  +A +  +  T        L
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHT----IIGT-SLSVLGLYLIA-IAASSNTIALANLGLL 55

Query: 147 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206
           + A +  +  ++Y+V +NQL+D+E+D++NKP+LPLA+GE S   G  I + + +++L  A
Sbjct: 56  LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA 115

Query: 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 266
             +  P  +  V   + +GTAYS  LP +R K    LAA C+ ++ G++    +++H Q 
Sbjct: 116 -ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ- 171

Query: 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRL 326
           ++LG  + I    +   T F+  F   IA  KD+ D++GD+++ I T ++ LGK+ VF+L
Sbjct: 172 WLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL 230

Query: 327 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 386
           S  +L+  Y   + VG  S    N    I+ H IL ++ W R + VDL D  +I  FY F
Sbjct: 231 SCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQF 290

Query: 387 IWK 389
           IWK
Sbjct: 291 IWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 94.5 bits (235), Expect = 3e-22
 Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 19/241 (7%)

Query: 153 AVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210
            +L+      +N   D E+D    NKP  PL SG IS    + + LA  L+ L  A+++ 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLL- 90

Query: 211 SPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
            P  +   +  + +G  YS   P LR K    L    +    GLL      + +  Y +G
Sbjct: 91  GPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLL------ILLGAYAVG 141

Query: 271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330
                   PL+     +    + I    D+ DV+GD+K GI+TL V LG++R   L    
Sbjct: 142 G---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA-- 196

Query: 331 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKA 390
             +   AA+++      L   L+ ++   +LA    +  R +   +       ++FI   
Sbjct: 197 --LLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALL 254

Query: 391 S 391
            
Sbjct: 255 F 255

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 60/293 (20%), Positives = 109/293 (37%), Gaps = 26/293 (8%)

Query: 98  LNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMH 157
           L   LK    L R  R      +++      LL    L  L          A +   L  
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLAR 60

Query: 158 IYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
                IN L+D E+D++N      PL SG +S+   + + +   L+ LA A+++ +P   
Sbjct: 61  SAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLL-NPLAF 119

Query: 216 WAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEI 275
              +A + +  AY         K  +FL    +    GL              L      
Sbjct: 120 LLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL------ 167

Query: 276 FTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335
                         + +    I  + D++GD+K G+K+L V+ G ++   L+  +L +A 
Sbjct: 168 ---LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLLAS 223

Query: 336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIW 388
              V++G         LI ++G  + A +   ++  VD+ D  +  + +    
Sbjct: 224 ALLVLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNL 274

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 27/192 (14%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           A+N   D EVD++N+P  P+ SG IS    + + +   ++ L  A +I    F+  ++  
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           +  G  Y+ +L      GN   +FL     +                   +G   E    
Sbjct: 115 VL-GILYNWKLKEYGLIGNLYVAFLTGMTFI--------------FGGIAVGELNEAVI- 158

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338
            L+ A AF+      I   KD+ DV+GD+  G +TL+++ G++   R++ ++  +A    
Sbjct: 159 -LLAAMAFLMTLGREIM--KDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA---- 211

Query: 339 VVVGASSPFLAN 350
            V+ +  P+L  
Sbjct: 212 -VLLSPLPYLFG 222

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 32/227 (14%)

Query: 146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205
           L+  L+   L   +  +IN   D +VD +N+P  P+ SG IS+       L   +  L  
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 206 AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR---WKGNSFLAAFCMVSLNGLLTQFPVYV 262
           A+++ +   +   +  I +   YS+    L+   W G   +       L  +        
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGL-SYEGLPWM-------- 150

Query: 263 HIQKYVLGRPL--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320
               + +  PL  +     L+++          I  + D   V+GD++ G+++L VM+G 
Sbjct: 151 --AGHAIFAPLTWQSVVVALIYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 321 ERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL 367
           +R   ++V+ +++    A+V+G         L+ I G   +A+I +L
Sbjct: 204 KRAAIVAVTTINVF--QAMVIG---------LLLIWGQPWVATIVFL 239

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 31/204 (15%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+DK+N+P  PL  G +S    +  +L    + LA A +I    F++A+ A++
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +A     +        P+Y  I    +G          + 
Sbjct: 116 LM-FLYAWKLKPLPFIGNVVVALLTGAT--------PIYGAIAVGRIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340
               I  F V +A   +KD+ D++GDK  G KTL +++GK+R      + +   +G   V
Sbjct: 157 GYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR-----AAYIGAIFGVLTV 211

Query: 341 VGASSPFLANKLITIIGHGILASI 364
           + +  P  A      IG G L  I
Sbjct: 212 IASFLPVKAG-----IGLGYLPII 230

Length = 277

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            +N   D EVD +N+PY P+ SG IS+   + +     ++ LA A ++    F+ A++  
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLG- 141

Query: 222 IFVGTAYSVQLPLLR-----WKGNSFLAAFCMVSLNGL--LTQFPVYVHIQKYVLGRPLE 274
           +F+   YS   P LR     W GN  +      S  GL        +             
Sbjct: 142 LFLAWIYSA--PPLRLKQNGWLGNYAVGL----SYEGLPWWAGAAAFGAGLP-----SWP 190

Query: 275 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334
           I    L+++          I  + D   V+GD++ G+++L V+ G++   R++  ++ + 
Sbjct: 191 IVILALLYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLF 245

Query: 335 YGAAVVV 341
             A + +
Sbjct: 246 QLAVIAL 252

Length = 314

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP 212
             L+   V  IN L+D+E D +NKP   + S   + G  + + +    +      +I  P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 213 PFIWAVIAWIFVGTAYSV-------QLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
            F    I  + +G  YSV       ++PL     N  ++      L  L        + Q
Sbjct: 105 KFALIFIIPLILGILYSVFFKRRLKRIPLF---KNLVVS-----LLWALSPLILGVYYYQ 156

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325
             +           L+    FI     +   + D+ D++GD+K G+KTL ++LGKER   
Sbjct: 157 LTI--------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT-L 207

Query: 326 LSVSMLSIAYGAAVVVGA 343
             + +L++ +   +++G 
Sbjct: 208 KFLLILNLLFLILLILGV 225

Length = 285

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            IN + D+E+DK+NKP  P+ SG IS+      ++   ++ L  ++ I    F+ A++  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           I +   Y+  L      GN   ++L       + G L  F V   I              
Sbjct: 115 ILL-YLYAKDLKKTGLIGNLIVAYLTGL--SFIFGGLAVFNVLRII-------------- 157

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334
            ++F  AF S +   I  +KD+ D++GD K  + TL +  G ++ + ++  +L +A
Sbjct: 158 -ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 19/206 (9%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI------RSP 212
           Y   IN   D ++D +N+PY P+ SG IS    I   +   +  +A A ++        P
Sbjct: 69  YTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFP 128

Query: 213 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRP 272
                 +   F+   YS   P L+ K N +L  F + +          Y+ +  +     
Sbjct: 129 NVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGA---------SYIALPWWAGHAL 177

Query: 273 LEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332
                  +   T   S   + IA + D   V+GD+  G+++L V  G E    + V  + 
Sbjct: 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID 237

Query: 333 IAYG--AAVVVGASSPFLANKLITII 356
           I  G  AA ++       A  L+ +I
Sbjct: 238 IFQGLIAAYLLAIGENLYAAALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPF 214
           ++N   D+E+D+VN+P  P+ SG +S    +  ++   L+++   V +       R    
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 215 IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 274
           I +++A +FV   YS   P L+ K N   +A  +    G +T          ++    L 
Sbjct: 128 ISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFIT----------FLSANALF 175

Query: 275 IFTRPLMFATAFISCF-CVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333
              RP +   A ++ F  + +  + D   V+GDK+ G+K+L+VM+G +  F +S  ++ +
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235

Query: 334 AYG 336
            + 
Sbjct: 236 VFA 238

Length = 331

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 29/241 (12%)

Query: 134 TLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGI 192
           ++ADL +PA        L PA   ++++  +N + D + D++N               G 
Sbjct: 37  SVADLFSPAAVALFAYFLFPA---NVFLYGVNDVFDADTDELNPKK---DREREVRYRGD 90

Query: 193 AITLASALMS--LAYAVMIRSPPFIWAVI-AWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249
              L +  +S  LA A ++  PP  W  + A++ +   YS   P LR+K    L +    
Sbjct: 91  RRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDS---- 144

Query: 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKF 309
             NGL        +I   V    L   + P + A A    + + +     + D++ D+  
Sbjct: 145 LSNGL--------YILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAA 196

Query: 310 GIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRV 369
           GI+T + +LG+ R +    +       AA    A    L    + ++   ++ +I    +
Sbjct: 197 GIRTTATVLGERRTYAYCAACWL---LAAAAFAAVDLRLG--ALLLVYPALVLAILRAGI 251

Query: 370 R 370
            
Sbjct: 252 A 252

Length = 282

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 51/222 (22%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMG---TGIAITLASALMSLAYAVMIRS---- 211
           Y   IN   D E+D +N+PY P+ SG IS     T I + L   L  LAY + + +    
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL-GLAYTLDVWAGHDF 196

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLR-----WKGNSFLAA-------FCMVSLNGLLTQFP 259
           P   +  +    +   YS   P L+     W GN  L A       +   +L G LT   
Sbjct: 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLT--- 251

Query: 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319
                         ++    L+++ A +      IA + D   ++GD+  G+++L V  G
Sbjct: 252 -------------PDVVVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVAFG 293

Query: 320 KER-----VFRLSVSMLSIAYGAAVVVGASSPFLANKLITII 356
            E      V  + ++ LS+   A  ++    P+ A  L+ +I
Sbjct: 294 VETAKWICVGSIDITQLSV---AGYLLAIGKPYYALALLGLI 332

Length = 375

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 61/202 (30%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEIS-------------MGTGIAITL-----ASALMSL 203
           AIN   D E+D++N+P  P+ SG +S              G  +A  L     A AL + 
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 204 ----AYAVMIRSPPFIW-AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258
                YA  ++  P +  A +A++                G++FL     V   GLL   
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYL---------------TGSTFLFGGAAVGTEGLLALL 160

Query: 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML 318
                                 +FA A ++     I  IKD+ D++GD+  G +TL +++
Sbjct: 161 V---------------------LFALAALATLAREI--IKDVEDIEGDRAEGARTLPILI 197

Query: 319 GKERVFRLSVSMLSIAYGAAVV 340
           G  +   ++ + L +A  A+ +
Sbjct: 198 GVRKALYVAAAFLLVAVAASPL 219

Length = 276

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N L D+E D+    K   P ASG + +  G+A      L  LA A+ +  P F+
Sbjct: 242 VYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFL 298

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++A++ +  AYS++L
Sbjct: 299 LVLLAYLALTLAYSLRL 315

Length = 479

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N + DVE D++   K   P+ASG +S+     + +   + SLA A ++ SP   
Sbjct: 62  VYL--VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLL-SPKLA 118

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++ ++ +  AYS +L
Sbjct: 119 LVLLVYLVLNLAYSFKL 135

Length = 295

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 24/203 (11%)

Query: 149 ALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEI---SMGTGIAITLASALMSL 203
           AL+ A+L+ I V   N   D +   D      L   SG I   SM   + ++LA  L++ 
Sbjct: 49  ALIAAILLQILVNLANDYFDYKKGTDTHGPDRL-KQSGLIVRQSMKPALILSLALFLLAG 107

Query: 204 AYAVMI-----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKG-NSFLAAFCMVSLNGLLTQ 257
              + +          +   +  I  G  Y+     L + G            L  L   
Sbjct: 108 LALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAY 167

Query: 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVM 317
           +     IQ   L   + + + P+    A        I    +L D++ D + G  TL+V 
Sbjct: 168 Y-----IQTGRLSWAILLPSLPVGILIA-------NILLANNLRDIEEDIRNGKYTLAVR 215

Query: 318 LGKERVFRLSVSMLSIAYGAAVV 340
           LG++   +L  ++L +AY A V+
Sbjct: 216 LGRKNARKLYAALLVVAYLAIVI 238

Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
PLN02922	315	prenyltransferase	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PLN02776	341	prenyltransferase	99.95
PRK08238	479	hypothetical protein; Validated	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.95
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.94
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.91
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.9
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.52
KOG4581	359	consensus Predicted membrane protein [Function unk	99.33
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	89.52
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.85
PRK13591	307	ubiA prenyltransferase; Provisional	88.44
PRK12872	285	ubiA prenyltransferase; Reviewed	87.43
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.31
PLN02922	315	prenyltransferase	86.85
PLN00012	375	chlorophyll synthetase; Provisional	86.3
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	85.58
PRK12884	279	ubiA prenyltransferase; Reviewed	84.86
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	84.22
PRK12392	331	bacteriochlorophyll c synthase; Provisional	83.99
PRK12875	282	ubiA prenyltransferase; Reviewed	83.62
PRK13105	282	ubiA prenyltransferase; Reviewed	83.07
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	82.99
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	82.5
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	82.28
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	81.85
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	81.15
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	81.11

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.4e-53  Score=402.63  Aligned_cols=265  Identities=56%  Similarity=0.983  Sum_probs=243.1

Q ss_pred             HHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 016127          128 SLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV  207 (394)
Q Consensus       128 ~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~  207 (394)
                      +++|.+..+|.++..+.+++.+++++++++.+..++||++|+|+||+|||+||+|||++|+++++.+...+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46676766677666778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHH
Q 016127          208 MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFI  287 (394)
Q Consensus       208 ~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~  287 (394)
                      .+|++++.++++.+++++++||.++||+|+||+++++..+..+++++.+.+|+|.|++++++|++ ..++.+.++..+++
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f~  165 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAFM  165 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHHH
Confidence            99988888877778799999998789999999999999998888888889999999999998875 34556666666788


Q ss_pred             HHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 016127          288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL  367 (394)
Q Consensus       288 ~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~  367 (394)
                      +++..+++++||++|+|||++.|++|+|+++|++++++++..++.++|+..++.|..++..+...++.+||++++..+++
T Consensus       166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~  245 (280)
T PLN02878        166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ  245 (280)
T ss_pred             HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999998888998888778899999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhc
Q 016127          368 RVRAVDLSDNASILSFYMFIWKASDS  393 (394)
Q Consensus       368 ~~~~vd~~~~~~~~~Fy~~i~~l~~~  393 (394)
                      |.+++|++++++..+||||||||||+
T Consensus       246 rs~~vD~~sk~~i~~fY~fiwklfy~  271 (280)
T PLN02878        246 RAQSVDLSSKAAITSFYMFIWKLFYA  271 (280)
T ss_pred             HhHhcCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999996

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=6.5e-51  Score=398.43  Aligned_cols=295  Identities=31%  Similarity=0.538  Sum_probs=245.8

Q ss_pred             chhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 016127           94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (394)
Q Consensus        94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~D  172 (394)
                      |++.+++..+.+++|+|++|||+++++.++++.+++++.....+. +...+...+.++++...++.+++.+||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            456678888899999999999999999999988777664322221 1112334445555556666666669999999999


Q ss_pred             ccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127          173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (394)
Q Consensus       173 r~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~  252 (394)
                      |+|||+||+++|++|+++++.+..++.++++.+++..|++.+ +..+++.+++++||.  ||+|+||+++.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999996544 444678899999995  99999999999999988888


Q ss_pred             hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (394)
Q Consensus       253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  332 (394)
                      |..+.+|.+.+..+...+.  ..++...++..++.++|+.+++++||++|+|||++.|+||+|+++|++++.+++..++.
T Consensus       159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~  236 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT  236 (308)
T ss_pred             HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHH
Confidence            8888788776543222222  23556666777888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 016127          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDS  393 (394)
Q Consensus       333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l~~~  393 (394)
                      ++|+..++.|......+...++.++|++.+..+++|.+++|++|+++.++||||||||||+
T Consensus       237 ~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~  297 (308)
T PRK12887        237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFL  297 (308)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence            9999888777766666666777799999999999999999999999999999999999996

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2e-36  Score=292.69  Aligned_cols=258  Identities=17%  Similarity=0.146  Sum_probs=205.5

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcc
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPl  181 (394)
                      ++|+|.|++||+....+......|.++|.+..++  +.   .+++.+++.+++++++|++||+.|+|+|++|+  |+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4789999999988787777777788887543222  21   24556778889999999999999999999995  59999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (394)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~  261 (394)
                      |+|++|++||+.+..+++++++.+++.+|+.++..+ .....+...|+.      +||++.++++.+++..|..+..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999999998776654 345556667774      8999999999888888866666654


Q ss_pred             hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (394)
Q Consensus       262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~  341 (394)
                           ++.|+.  .+....+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...+..++..++.+.
T Consensus       150 -----Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~  222 (286)
T PRK12895        150 -----AVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWIS  222 (286)
T ss_pred             -----HHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHH
Confidence                 344431  1222334567788999999999999999999999999999999999988877766777776666666


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHH
Q 016127          342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFY  384 (394)
Q Consensus       342 g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~Fy  384 (394)
                      |....    ...|.++.++.+..+.+|+..+|.+|+++| ..||
T Consensus       223 g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        223 GIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            65543    234667888999999999999999999988 6655

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=1.7e-35  Score=287.11  Aligned_cols=259  Identities=19%  Similarity=0.166  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHHchhhhHHHH---HHHHHHHHhcc--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127          102 LKKFHALYRFMRAYACAGVI---IATTSNSLLPV--QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~--~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk  176 (394)
                      ++++++|+|++|.+++.+..   +|+..|..++.  +..++  +.   .+++.+++..++++++|++||+.|+|+|++|+
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            46899999999999987774   45656666653  22222  22   24567889999999999999999999999876


Q ss_pred             --CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (394)
Q Consensus       177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~  254 (394)
                        |+||+|+|++|+++++.+..++.++++.+++.+|+..+..+ .++.++.+.||.      +||++.++++..++..+.
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence              49999999999999999999999999999998887666555 455667889995      899999999988887776


Q ss_pred             HhhhhHHhhhhhHhhCCCCcCCCHHHH-HHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       255 l~~lg~~~~~~t~v~g~~~~~~~~~~i-~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      .+..|+.     ++.|+    .+...+ .++....+|+.+++++++++|+|||++.|+||+|+++|+++..++.. +..+
T Consensus       151 ~~l~g~~-----av~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~  220 (289)
T PLN02809        151 GALLGWA-----AVKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAA  220 (289)
T ss_pred             HHHHHHH-----HHhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHH
Confidence            6666653     34454    233333 36677788999999999999999999999999999999996666654 6666


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  385 (394)
Q Consensus       334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~  385 (394)
                      ++..+...|+..+..+  . +.+++++.+..+.+|++.+|.+|+++|.++|.
T Consensus       221 ~~~~l~~~g~~~~~~~--~-~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        221 SIGGLALSGYNAGLGW--P-YYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHHHHHhcCcH--H-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            6776667777665432  2 44578888889999999999999998877653

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-35  Score=289.14  Aligned_cols=260  Identities=17%  Similarity=0.200  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~  177 (394)
                      .++++++|+|++||+++.+..   +|++.|..+|.+..++  +.   ..++.+++.+++++++|++||++|+|+|++|+|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            446789999999999987775   5777888887654333  22   245677888999999999999999999987653


Q ss_pred             --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127          178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (394)
Q Consensus       178 --~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l  255 (394)
                        +||+|+|++|++|+..+..++.++++.+++.+|+.++..+ +.+.++.+.||.      .||++.++++.+++.+|..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence              8999999999999999999999999999998997666555 345567889995      7999888888888877766


Q ss_pred             hhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 016127          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (394)
Q Consensus       256 ~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~  335 (394)
                      +..|+..     +.|+    ++...+++.+..++|+.+++++|++||+|+|++.|+||+|+++|++++.++.. +..++.
T Consensus       153 ~l~g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~  222 (290)
T PRK12870        153 VLISWSA-----VTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTV  222 (290)
T ss_pred             HHHHHHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHH
Confidence            5555542     3444    35555667778899999999999999999999999999999999998887666 445444


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHH
Q 016127          336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYM  385 (394)
Q Consensus       336 ~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~Fy~  385 (394)
                      .++...|+..+..+   .|..+..+....+.+|+..+  |.+|++.|.+||.
T Consensus       223 ~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~  271 (290)
T PRK12870        223 GFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL  271 (290)
T ss_pred             HHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            55566677665432   24457778888999999988  8778877766654

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=4.2e-35  Score=284.21  Aligned_cols=264  Identities=19%  Similarity=0.206  Sum_probs=207.7

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCCCccc
Q 016127          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLA  182 (394)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~RPla  182 (394)
                      +|+|+|++||++...+......|.++|.++.++  +.   ..++.+++.+++++++|++||+.|+|+|++|  +|+||+|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            689999999999988877777788887554333  22   2566788999999999999999999999998  5799999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHh
Q 016127          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (394)
Q Consensus       183 sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~  262 (394)
                      +|++|++++..+..++.++++.++..+|+.+...+ ..+.++.+.|+.      +||++.++++..++..+..+..|+.+
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a  149 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA  149 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888888887665544 345566789985      89999999999988887766666543


Q ss_pred             hhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 016127          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  342 (394)
Q Consensus       263 ~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g  342 (394)
                           +.|..  +.....+++.+..++|+.+++++||++|+|+|++.|+||+|+++|+|++++++..+..+++.+.++.+
T Consensus       150 -----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       150 -----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             -----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                 33442  11144455667788999999999999999999999999999999999998888877777777666666


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHH
Q 016127          343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMFIWKA  390 (394)
Q Consensus       343 ~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-Fy~~i~~l  390 (394)
                      ...+..+   .|.++..+....+.++.+.+|.+|+++|++ |+.....+
T Consensus       223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~~l  268 (282)
T TIGR01475       223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFL  268 (282)
T ss_pred             HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHH
Confidence            6555432   344556666678899999999999887775 66665443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.2e-35  Score=282.91  Aligned_cols=269  Identities=19%  Similarity=0.170  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (394)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk  176 (394)
                      +.++++|+|+|++||++.+.+....+.|.++|...   ....++.   ..++++++.+++++++|++||++|+|+|++|+
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            34567999999999999998877777777776421   0122332   35677888899999999999999999999997


Q ss_pred             --CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (394)
Q Consensus       177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~  254 (394)
                        |+||+|+|++|+++++.++.++.++++.+++.+|+.+.... +..++....||.      +||++.++++.+++..|.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~  152 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL  152 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence              48999999999999999999998888888888887766555 455667889995      899999999999998887


Q ss_pred             HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA  334 (394)
Q Consensus       255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  334 (394)
                      ++.+|+.     ++.|+    ++...+++.+..++|+.+++++|+++|+|+|++.|+||+|+++|++++.++......+.
T Consensus       153 ~~l~G~~-----av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        153 APIAGVV-----AVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            7777764     34444    35555666777889999999999999999999999999999999999888766555554


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 016127          335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKA  390 (394)
Q Consensus       335 ~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l  390 (394)
                      ..+....+.....   ..++.++..+.+..+.++.+.++.++++.|+.|+..+-++
T Consensus       224 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l  276 (291)
T PRK12874        224 VLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL  276 (291)
T ss_pred             HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            4444444443332   2234567778888899999998877788899988777664

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-35  Score=285.80  Aligned_cols=268  Identities=16%  Similarity=0.194  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127           99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (394)
Q Consensus        99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--  176 (394)
                      ...++++++|+|++||++.+....+...|+++|.+..++  +.   .+++.+++.+++++++|++||++|+|+|++|+  
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            346678999999999999999988888898888654333  22   24567889999999999999999999999985  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (394)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~  256 (394)
                      |+||+|+|++|++|++.+..++.+.++.+++.+|+.+...+. +..++...||.      +||++.++++.+++..|..+
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence            589999999999999999877777777778888876665553 44456778985      89999999999998887666


Q ss_pred             hhhHHhhhhhHhhCCCCc----CCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127          257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (394)
Q Consensus       257 ~lg~~~~~~t~v~g~~~~----~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  332 (394)
                      ..|+..     +.|....    ..+...+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..+..
T Consensus       157 ~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~  230 (300)
T PRK13106        157 FSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL  230 (300)
T ss_pred             HHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence            666543     3342100    012233445567789999999999999999999999999999999 778888887877


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016127          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIW  388 (394)
Q Consensus       333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~  388 (394)
                      ++..++.+.|+..+..+   .|..+..+....+.+|+..+|.+ +++.+.|.+..|
T Consensus       231 ~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~  282 (300)
T PRK13106        231 FSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY  282 (300)
T ss_pred             HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence            77777777777665433   35567778888999999999988 556666655444

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-34  Score=279.85  Aligned_cols=264  Identities=15%  Similarity=0.058  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHchhhhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-
Q 016127          102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP-  177 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~-  177 (394)
                      ++++++|+|++||+++.++.+   |.+.|.+++.+..++  +   ...++++++++++++++|++||+.|+|+|++|+| 
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT   78 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--L---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT   78 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            456889999999999998865   445566665433222  2   2256788999999999999999999999998765 


Q ss_pred             -CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127          178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (394)
Q Consensus       178 -~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~  252 (394)
                       +||+|+|++|+++|+.+..++.++++.+++.+    |+.++..+ ++.++....||.      +||++...++++++..
T Consensus        79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~  151 (294)
T PRK12873         79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCW  151 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHH
Confidence             99999999999999999999999998888765    44455444 345556789995      8999999999999888


Q ss_pred             hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (394)
Q Consensus       253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  332 (394)
                      +..+.+||.     ++.|+.  +.....+++++..++|+.+++++|+++|+|||+++|+||+|+++|++ +......+..
T Consensus       152 a~~~l~gw~-----Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~  223 (294)
T PRK12873        152 GFAVLIPWA-----AAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYF  223 (294)
T ss_pred             HhHHHHHHH-----HHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHH
Confidence            777777763     345542  22223345557889999999999999999999999999999999985 4455555777


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHH-HHHHHHHH
Q 016127          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI-LSFYMFIW  388 (394)
Q Consensus       333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~--~~~~-~~Fy~~i~  388 (394)
                      ++..++...|...+..+   .|.++.++.+..+.+|+..+|.+|  +++| ..|....|
T Consensus       224 ~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~  279 (294)
T PRK12873        224 LTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVI  279 (294)
T ss_pred             HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccH
Confidence            77777778888776543   355677788889999999999987  4666 44544444

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.8e-34  Score=277.07  Aligned_cols=264  Identities=17%  Similarity=0.162  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL  179 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~R  179 (394)
                      .+++++|+|++||++......+...|.++|..+.++  +   ...++.+++.+++++++|++||++|+|+|++|+|  +|
T Consensus         5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            467899999999999998888888888888554333  2   1245677899999999999999999999999984  89


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg  259 (394)
                      |+++|++|++|+..+...+.++++.+++.+|++++..+. +..++...||.      +||++.++++.+++..+..+..|
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g  152 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA  152 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence            999999999999998776666666666778876665553 35566889995      79999999999988877666556


Q ss_pred             HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (394)
Q Consensus       260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~  339 (394)
                      ++.     +.|+    ++...+++.+..++|+.+++++++++|+|||+++|+||+|+++|+++++++........+.+.+
T Consensus       153 ~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        153 WIA-----IRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            542     3444    3566666777789999999999999999999999999999999999998887666666666555


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHH-HHHHHHH
Q 016127          340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD-NASILS-FYMFIWK  389 (394)
Q Consensus       340 ~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~-~~~~~~-Fy~~i~~  389 (394)
                      +.+.....++   .|.++..+....+.++.+.++.+| ++.|++ |...+|.
T Consensus       224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~  272 (291)
T PRK12886        224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI  272 (291)
T ss_pred             HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence            5555544332   344555566667778888888887 356666 5555554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=5.1e-34  Score=276.99  Aligned_cols=264  Identities=17%  Similarity=0.211  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHchhhhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127          102 LKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--  176 (394)
                      .+++++|++++||+++.+.   .+|++.|.++|.... ..++   ...++++++.+++++++|++||++|+|.|++|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            4578999999999988764   578888888875432 1222   225677888999999999999999999999866  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (394)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~  256 (394)
                      ++||+++|++|++++..+..++.++++.+++.+|+..+..+ +++.++.+.||.      .||.+.++++..++..+..+
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~  152 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI  152 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999999888887655544 456677899995      79998889888887777555


Q ss_pred             hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (394)
Q Consensus       257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (394)
                      ..++..     +.|.    ++...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus       153 l~~~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        153 LMAFAA-----VQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            555432     3343    4566667778889999999999999999999999999999999999998888766555444


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHH
Q 016127          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYMFIWK  389 (394)
Q Consensus       337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~Fy~~i~~  389 (394)
                       ..+.++..+..  ..+| ++.++....+.++...+|.+|+++|+ .|...++.
T Consensus       224 -~~~~~~~~~~~--~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  273 (285)
T PRK12847        224 -WLILGIISSLH--NIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYV  273 (285)
T ss_pred             -HHHHHHHhcCc--HHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHH
Confidence             34445544432  2233 34555566888899999988876555 44444444

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=4.6e-34  Score=277.85  Aligned_cols=267  Identities=22%  Similarity=0.329  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127          100 VFLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (394)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk  176 (394)
                      ..+++++.+.+++|+++++++.   +|...|..++....++     +...++++++++++++++|++||+.|+|+||+|+
T Consensus         5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~   79 (289)
T COG0382           5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP   79 (289)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence            3455666777777776666664   4555555555422221     3346788899999999999999999999999999


Q ss_pred             C--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127          177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (394)
Q Consensus       177 ~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~  254 (394)
                      |  +||+|||++|+++++.+.++++++++.+++.+|++.+.+. +++.++.+.|+      ++||.+.+++++++..++.
T Consensus        80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~  152 (289)
T COG0382          80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGL  152 (289)
T ss_pred             CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence            8  9999999999999999999999999999999998665544 57888999995      5999999999999998887


Q ss_pred             HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA  334 (394)
Q Consensus       255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  334 (394)
                      .+..|+..     +.+.    .+...+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ..
T Consensus       153 ~~~~g~~a-----~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~  222 (289)
T COG0382         153 GALAGAAA-----VGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LA  222 (289)
T ss_pred             HHHHHHHH-----HhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HH
Confidence            76666543     2332    34556777888999999999999999999999999999999999999998888665 44


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 016127          335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKA  390 (394)
Q Consensus       335 ~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l  390 (394)
                      ..++..+++......  ..+..+..+.+..+.+|...+|.++++.|+.++..-..+
T Consensus       223 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (289)
T COG0382         223 SALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLL  276 (289)
T ss_pred             HHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHH
Confidence            444555555544321  346677888888999999999999999999988765543

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.8e-34  Score=276.62  Aligned_cols=256  Identities=17%  Similarity=0.164  Sum_probs=199.6

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhcc---ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127          105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (394)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~---~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R  179 (394)
                      +++|+|++||++-+........+.+.+.   ++  ..++.   ..++.+++.+++++++|++||++|+|+|++|+  |+|
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R   76 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDG--SVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR   76 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence            6799999999776654333333443432   22  12232   25667889999999999999999999999998  589


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg  259 (394)
                      |+|+|++|++|++.+...+.++++.++..+|+.++..+ .+.++....|+.      .||++.++++.+++..+..+..|
T Consensus        77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g  149 (284)
T PRK12888         77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA  149 (284)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999998888888888888887666544 344556778985      79999999999888877666566


Q ss_pred             HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (394)
Q Consensus       260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~  339 (394)
                      ++.     +.|+    +++..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++.++...+..+.+.++.
T Consensus       150 ~~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~  220 (284)
T PRK12888        150 WIA-----VTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFV  220 (284)
T ss_pred             HHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHH
Confidence            543     3444    4666677778889999999999999999999999999999999999998877767667776666


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHH
Q 016127          340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFY  384 (394)
Q Consensus       340 ~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~Fy  384 (394)
                      +.|......+   .|.++.++.+..+.||++.+|.+|++.|. .|+
T Consensus       221 ~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        221 WFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            6776665443   34567778888999999999999988775 655

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-34  Score=276.13  Aligned_cols=262  Identities=18%  Similarity=0.202  Sum_probs=193.6

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas  183 (394)
                      ++|+|+|++||++...+.++.+.|++++.+..++  ..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3789999999999999999999999888543221  11   145678889999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (394)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~  263 (394)
                      |++|+++++.++.++.++++.+++.+|+..+... +.+.++.+.||.     |+||.+.++++..+...|..+.+|+.  
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~--  149 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA--  149 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999998986555444 455667889996     79999998988887776655444532  


Q ss_pred             hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 016127          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  343 (394)
Q Consensus       264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~  343 (394)
                          ..+..   .....+.+.+..++|+.+++++||++|+|||+++|+||+|+++|+|++.+++..+....... ...++
T Consensus       150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~-~~~~~  221 (276)
T PRK12882        150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA-SPLPY  221 (276)
T ss_pred             ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                22321   12233445566677889999999999999999999999999999999998877555444332 22222


Q ss_pred             -hcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHH
Q 016127          344 -SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMFIW  388 (394)
Q Consensus       344 -~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-Fy~~i~  388 (394)
                       ...  .+..++..........+.++.+..|.+|++.|++ |...+|
T Consensus       222 ~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  266 (276)
T PRK12882        222 LLST--FGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMF  266 (276)
T ss_pred             HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             112  1222333333333445556777888888877755 444443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-34  Score=275.99  Aligned_cols=262  Identities=17%  Similarity=0.170  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127          102 LKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--  176 (394)
                      ++++++|+|++|++++.++.   +|.+.|..+|.+..++  +.   ..++.+++.+++++++|++||++|+|+|++++  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999988876664   4666777777544333  21   24556788889999999999999999999765  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (394)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~  256 (394)
                      |+||+|+|++|++++..++.++.++++.+++.+|+..+..+ +++.++.+.|+.      .||++.++++.+++..|..+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999998888887665544 456667889984      78988889888888777655


Q ss_pred             hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (394)
Q Consensus       257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (394)
                      .+|+..     +.+.    ++...+++.+...+|+...++.++++|+|||+++|+||+|+++|++++.+... ++.+...
T Consensus       150 ~~g~~a-----~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~  219 (282)
T PRK12848        150 PMAFAA-----VQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLA  219 (282)
T ss_pred             HHHHHH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHH
Confidence            556542     3333    45666677778899999999999999999999999999999999998877764 4444444


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHH
Q 016127          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF-YMFIW  388 (394)
Q Consensus       337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~F-y~~i~  388 (394)
                      .+.+.++..+..   ..|.++..+....+.+++..+|.+|+++|.++ +...|
T Consensus       220 ~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~  269 (282)
T PRK12848        220 LLAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNW  269 (282)
T ss_pred             HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence            444555554432   23456777888889999999999888766544 44333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-33  Score=273.87  Aligned_cols=256  Identities=20%  Similarity=0.277  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccc
Q 016127          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (394)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPla  182 (394)
                      +++++|++++||+++..+.++.+.|.++|.+..+   +   ...++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---L---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---h---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4789999999999999999999999888855322   1   124567788999999999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHh
Q 016127          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (394)
Q Consensus       183 sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~  262 (394)
                      +|++|+++++.++.++.++++.++..+|+..+... +++.++++.||.     ++||+++.++++.++.+|.+...|+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988887555444 456678899996     689999889998888888666555432


Q ss_pred             hhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 016127          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  342 (394)
Q Consensus       263 ~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g  342 (394)
                           + +..    +...+++....++|+.+.++++|++|+|||+++|+||+|+++|+|++.+++..+....+++..+.+
T Consensus       150 -----~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~  219 (279)
T PRK12884        150 -----V-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPY  219 (279)
T ss_pred             -----h-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2 221    224455556778899999999999999999999999999999999999888766666665433333


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHH
Q 016127          343 ASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF  383 (394)
Q Consensus       343 ~~~~~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~F  383 (394)
                      .....++   .|.+...+....+.++. +.++.+|++.++.+
T Consensus       220 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        220 LFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            2222222   34455556666666665 55666666666665

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1.8e-33  Score=277.38  Aligned_cols=255  Identities=19%  Similarity=0.281  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCc
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP  180 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RP  180 (394)
                      .+++|+|++++||+++. ..+|++.|.++|.+.. +++... ...+...++...+..+++|++||++|+|+|++|||.||
T Consensus         9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp   86 (331)
T PRK12392          9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP   86 (331)
T ss_pred             hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence            45689999999999888 7788888877876432 222111 11112223333455677899999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127          181 LASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (394)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l~l~l~~~l~~-------~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g  253 (394)
                      +++|++|+++++.+..++.++++.+++.++.       +.++...+++++++++||.  ||+++||+++.+...+++.++
T Consensus        87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~  164 (331)
T PRK12392         87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG  164 (331)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence            9999999999999999999888887766542       2233333456788999995  899999999888877777776


Q ss_pred             HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      .....+++     ++.+.    +++..+++.+..++|+.+++++||++|+|||++.|+||+|+++|++++.++......+
T Consensus       165 ~~~~~~~~-----a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        165 FITFLSAN-----ALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHH-----HHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            44433322     33443    3555566667788999999999999999999999999999999999999888765556


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016127          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV  372 (394)
Q Consensus       334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v  372 (394)
                      .....+..++.....+.   +....++.+..+.+|.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHHH
Confidence            66655666666554432   3345556666777777754

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3e-33  Score=274.60  Aligned_cols=265  Identities=15%  Similarity=0.108  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHHHHHH---chhhhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127           98 LNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (394)
Q Consensus        98 ~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~  171 (394)
                      .+..++++++|++++   ||+......+|++.|.++|.....   ..++.   ..++.+++.+++++++|++||++|+|+
T Consensus        23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i   99 (314)
T PRK12878         23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI   99 (314)
T ss_pred             hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344778999999999   777888888999999998865311   22221   256778899999999999999999999


Q ss_pred             cccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127          172 DKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (394)
Q Consensus       172 Dr~nk--~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~  249 (394)
                      |++++  ++||+++|++|++++..+..++.++++.+.+..|++.+..+ ++++++.+.|+.      .||+..+++...+
T Consensus       100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~G  172 (314)
T PRK12878        100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLG  172 (314)
T ss_pred             ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHH
Confidence            99876  48999999999999999999999999999888887665554 456677899985      8998888877777


Q ss_pred             HHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHH
Q 016127          250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS  329 (394)
Q Consensus       250 ~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~  329 (394)
                      +..+..+..|++.     +.|+    ++...+++++..++|+.+.+.+++++|+|+|+++|+||+|+++|+++++++.. 
T Consensus       173 l~~~~~~l~g~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~-  242 (314)
T PRK12878        173 LAFSWGALMGWAA-----HFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL-  242 (314)
T ss_pred             HHHHHHHHHHHHH-----HhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH-
Confidence            7666555566543     3443    45555666777889999999999999999999999999999999999988875 


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127          330 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  385 (394)
Q Consensus       330 l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~  385 (394)
                      +..+......+.+...+.++   .+.++.......+.+|..++|.+|++.|+++|.
T Consensus       243 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        243 FYGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence            33443343444444444333   233455555667889999999888776665554

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.7e-33  Score=272.56  Aligned_cols=263  Identities=19%  Similarity=0.228  Sum_probs=194.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas  183 (394)
                      ++++|++++||+++..++++.+.|.+++.+..++  +   ...++.+++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--L---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--h---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3688999999999999999999998888543222  2   1256678899999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (394)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~  263 (394)
                      |++|+++++.++.++.++++.+++.+|++.+..+ +++.++.+.||.     ++||++.++++.++...|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999988887666554 456667889995     589999999999988888666666542 


Q ss_pred             hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 016127          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  343 (394)
Q Consensus       264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~  343 (394)
                          +.+.      ...+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+...+.. .+.
T Consensus       150 ----~~~~------~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~-~~~  218 (279)
T PRK09573        150 ----VFNV------LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP-LPY  218 (279)
T ss_pred             ----Hccc------hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                2221      22334455667888999999999999999999999999999999999887755444443322 222


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHH-HHHHHHHHHHh
Q 016127          344 SSPFLANKLITIIGHGILASIFWLR-VRAVDLSDNASI-LSFYMFIWKAS  391 (394)
Q Consensus       344 ~~~~~~~~~~~~~~~~i~a~~l~~~-~~~vd~~~~~~~-~~Fy~~i~~l~  391 (394)
                      ..+  ..+..|.++..+....+.++ .+..+.+|++.| +.+..+.+.+|
T Consensus       219 ~~~--~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~  266 (279)
T PRK09573        219 FLG--IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMI  266 (279)
T ss_pred             HHH--HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            211  11233444555555556666 344455555543 33344444443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=9.7e-34  Score=274.78  Aligned_cols=222  Identities=20%  Similarity=0.222  Sum_probs=175.8

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccccc
Q 016127          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG  184 (394)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG  184 (394)
                      |+|++++||+++..++++++.|.+++.....+ +++  ...++.++++..+.+.++|++||++|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887422122 222  112344677888999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhh
Q 016127          185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI  264 (394)
Q Consensus       185 ~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~  264 (394)
                      ++|+++++.+..++..+++.+++.++.+......+++.+++++||.  ||+++||+++++++..++.++.....+.+   
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~---  153 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH---  153 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence            9999999999999999999998888766533334567778999995  89999999988988887765533222221   


Q ss_pred             hhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 016127          265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV  340 (394)
Q Consensus       265 ~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~  340 (394)
                        .+.+.    +++..++..+..++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++|...+.
T Consensus       154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence              12232    35555555667778899999999999999999999999999999999999998877777765443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=3.1e-33  Score=274.88  Aligned_cols=225  Identities=21%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHH-HHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT-GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~-~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R  179 (394)
                      .++++++|++++||+++.+++++++.|++.+. . .++...... .++.++++..++++++|++||++|+|+|++|||+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            35678999999999999999999888876543 2 222221111 13445677788999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh-hh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT-QF  258 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~-~l  258 (394)
                      |+++|++|+++++.+..++.++++.+++.+|++.+.+. +++++++++||.  ||+++||+++++++.+++.+|..+ ..
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988886555443 456777899995  888999999889888887765433 22


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (394)
                      +++     ++.++.   .++..++..+..++|+.+++++||++|+|+|+++|+||+|+++|++++++++..++.++|.+.
T Consensus       178 g~~-----~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        178 GAA-----AFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHH-----HhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            322     222222   455556666777788999999999999999999999999999999999999887777776654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-33  Score=268.74  Aligned_cols=260  Identities=13%  Similarity=0.145  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHch-hhhHHHHHHHH-HHHHhcc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127          103 KKFHALYRFMRA-YACAGVIIATT-SNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (394)
Q Consensus       103 ~~l~~~~~l~Rp-~~~~~~~l~~~-~g~llA~------~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~  171 (394)
                      +++|.|.++.|. |+.+.  +|+. .|+++|.      ++   .++     +..+++..++.+++++++|++||+.|+|+
T Consensus         2 ~~~~~~~~~i~~~ht~Fa--lpfa~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~Drdi   74 (300)
T PRK12876          2 MRIKYFQQLINCKYALFS--ALFLSASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAI   74 (300)
T ss_pred             chHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            358899999997 55554  4543 4666774      22   222     23366788999999999999999999999


Q ss_pred             cccCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127          172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (394)
Q Consensus       172 Dr~nk~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~  249 (394)
                      |++|+|  +||+|+|++|+++++.+...+.++++.++..+|+.++..+. +.+++...||.      +||+++++++.++
T Consensus        75 D~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLG  147 (300)
T PRK12876         75 DKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILG  147 (300)
T ss_pred             cCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHH
Confidence            999985  99999999999999999988888888888889987776653 45566689995      8999999999888


Q ss_pred             HHHhHHhhhhHHhhhhhHhhCCCCcCCCH----HHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127          250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR  325 (394)
Q Consensus       250 ~~~g~l~~lg~~~~~~t~v~g~~~~~~~~----~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~  325 (394)
                      +..+..+..++.     ++.+++   .++    ..+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.+
T Consensus       148 l~~~~~~l~~~~-----Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~  219 (300)
T PRK12876        148 LVYYLAILMNFF-----AIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIR  219 (300)
T ss_pred             HHHHHHHHHHHH-----HHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHH
Confidence            877765555554     334442   233    22344556677888999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHH
Q 016127          326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IFWLRVRAVDLSDNASILSFYMF  386 (394)
Q Consensus       326 l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~--~l~~~~~~vd~~~~~~~~~Fy~~  386 (394)
                      +...+..++..++++.|...+..+  .+|..+.++.+.  .+.+|.+.+|.|+++.|..||..
T Consensus       220 ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  280 (300)
T PRK12876        220 IASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG  280 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence            777677776666667777666543  234444443333  34566688888888999887764

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=5.3e-33  Score=269.29  Aligned_cols=261  Identities=18%  Similarity=0.180  Sum_probs=195.6

Q ss_pred             HHHHHHHHchhhhHHH---HHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CC
Q 016127          105 FHALYRFMRAYACAGV---IIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY  178 (394)
Q Consensus       105 l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~  178 (394)
                      +++|.|++|++++.++   .+|.+.|..+|... ... ++.   ..++.+++..++++++|++||++|+|+|+.|+  |+
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~   76 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKS   76 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccC
Confidence            3578899998887666   45666777777541 111 121   24556778889999999999999999999765  48


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      ||+|+|++|++++..+..++.++++.+++.+|+..+..+ +++.++.+.||.      .||++.++++..++..+..+..
T Consensus        77 RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~  149 (281)
T TIGR01474        77 RPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALM  149 (281)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988897666554 456677999995      8999999998888877766666


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (394)
                      |++.     +.|.    ++...+++.....+|+.+.+++|+++|+|+|++.|+||+|+++|++++++... +..++....
T Consensus       150 g~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~  219 (281)
T TIGR01474       150 GWAA-----VTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLL  219 (281)
T ss_pred             HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHH
Confidence            7542     3443    35555556677889999999999999999999999999999999988755544 444433434


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHH
Q 016127          339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF-YMFIWK  389 (394)
Q Consensus       339 ~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~F-y~~i~~  389 (394)
                      .+.+...+..+   .|.++..+.+..+.++...+|.+|+++|+++ ...++.
T Consensus       220 ~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~  268 (281)
T TIGR01474       220 ALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYV  268 (281)
T ss_pred             HHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHH
Confidence            44554444322   3446677778889999999988777655544 444444

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=8.1e-33  Score=276.38  Aligned_cols=273  Identities=19%  Similarity=0.202  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R  179 (394)
                      ..+++|+|++++||++|..++++++.|+.. .+.+ ++.+. .....+.++++..++++++|++||++|+|+|++|+|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~-~g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R  158 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAA-SGNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR  158 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHH-cCCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence            457789999999999999999999998874 3322 22221 11223567778889999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l-------~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~  252 (394)
                      |+++|++|+++++.+..++.++++.+++.+       +++.+.+ .+++++++++||.  ||+++||++++|++.++..+
T Consensus       159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l-~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL-ALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence            999999999999997777766666666544       3322322 3456677999995  89999999999988776655


Q ss_pred             hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (394)
Q Consensus       253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  332 (394)
                      +.++..+.+     ++.|.    +++..+++.++.++|+.++++.||++|+|+|++.|+||+|+++|++++++++..++.
T Consensus       236 ~~lp~~~g~-----a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        236 ISLPWWAGQ-----ALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHH-----HHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            533221111     23444    456666666777889999999999999999999999999999999999998875444


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 016127          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKAS  391 (394)
Q Consensus       333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l~  391 (394)
                      +....  +.++....  ...++......+...++++..+...+|+.++...|.-.=+.|
T Consensus       307 l~~l~--~~~~l~~~--~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~  361 (375)
T PLN00012        307 ITQLS--VAGYLLAI--GKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPF  361 (375)
T ss_pred             HHHHH--HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            44332  22222221  111222122222223333333344457777666665544433

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=3e-32  Score=263.76  Aligned_cols=265  Identities=14%  Similarity=0.123  Sum_probs=194.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcc
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPl  181 (394)
                      ++|+|+|++||++.....++.+.|.+++.+..+  ++.   ..++.+++..++++++|++||++|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGV--SWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            368999999999989999999999888854322  222   24567888899999999999999999999987  69999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhH
Q 016127          182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV  260 (394)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~  260 (394)
                      |+|++|++++..++.++.++++.+++. +|+.+.....+...+..+.||.     ++||+++...+..++..+.++..|+
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~  150 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY  150 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877 7765433333445567789996     5899998777666665555554454


Q ss_pred             HhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 016127          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV  340 (394)
Q Consensus       261 ~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~  340 (394)
                      +.     ..|.    ++...+++.+..++|+.+.....+++|+|||+++|+||+|+++|++++.+....+..+...+...
T Consensus       151 ~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~  221 (279)
T PRK12869        151 AS-----GTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL  221 (279)
T ss_pred             HH-----HhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            32     3343    45666666777888988887778899999999999999999999999988776555444443333


Q ss_pred             HHHhcCCchHHHHHHHHHH-HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHh
Q 016127          341 VGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNA-SILSFYMFIWKAS  391 (394)
Q Consensus       341 ~g~~~~~~~~~~~~~~~~~-i~a~~l~~~~~~vd~~~~~-~~~~Fy~~i~~l~  391 (394)
                      .+. ...  + ..|.++.. ..+..+.++.+.++.++++ +.+.|...+|++.
T Consensus       222 ~~~-~~~--g-~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        222 LYL-YYI--G-LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HHH-hhc--c-HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            333 222  2 23333333 3444566666667655554 5566888888864

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=4.1e-32  Score=264.98  Aligned_cols=267  Identities=13%  Similarity=0.062  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R  179 (394)
                      ++++++|++++||+.+..+.++...|.++|.+..  .++.   ..++++++..++++++|++||++|+|+|++|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            3469999999999999999999999998886432  2232   24567889999999999999999999999987  699


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      |+++|++|++|+..++.++.++++.+++. .|+.+.....+........||.     ++||++.......++..+.++..
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCccchHHHHHHHHhHHHH
Confidence            99999999999999999999999988755 5654554443322335678996     69999965555555544455555


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (394)
                      |++.     +.|.    ++...+++.+..++|+...+..++++|+|||+++|+||+|+++|++++++++.....+.... 
T Consensus       157 g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-  226 (296)
T PRK04375        157 GWAA-----VTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV-  226 (296)
T ss_pred             HHHH-----hCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH-
Confidence            6542     3343    45656677788899999999999999999999999999999999999888766443333222 


Q ss_pred             HHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHH
Q 016127          339 VVVGASSP-FLANKLITIIGHGILASIFWLRVRAVDLSDNA-SILSFYMFIWKA  390 (394)
Q Consensus       339 ~~~g~~~~-~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~-~~~~Fy~~i~~l  390 (394)
                      .+++...+ .++  .++..+....+..+.++.+.++.+|++ +.+.|+...|.+
T Consensus       227 ~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        227 SLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            22222222 222  222224455566677788888777665 557788888775

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=8e-32  Score=263.97  Aligned_cols=226  Identities=21%  Similarity=0.312  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R  179 (394)
                      ..+++|+|++++||+++..++++++.|...+ +.+ ++... .....+.++++..++++++|.+||++|+|.|+.|+|+|
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~R   89 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYR   89 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC
Confidence            4566889999999999999999999888753 322 22211 11123445577789999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~------~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g  253 (394)
                      |+++|++|+++++.++..+.++++.+++.+..      +..+...+++++++++||.  ||+++||+++++++..+..++
T Consensus        90 pi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~  167 (306)
T TIGR02056        90 PIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYI  167 (306)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHH
Confidence            99999999999999998888888877765431      2223333566778999995  889999999888887766655


Q ss_pred             HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      ..+..+.+     ++.|.    +++..++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++++++..++..
T Consensus       168 ~~~~~~~~-----a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~  238 (306)
T TIGR02056       168 ALPWWAGH-----ALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI  238 (306)
T ss_pred             HHHHHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence            33322222     22343    4566666677778899999999999999999999999999999999999998877777


Q ss_pred             HHHHHH
Q 016127          334 AYGAAV  339 (394)
Q Consensus       334 a~~~~~  339 (394)
                      ++.+.+
T Consensus       239 ~~~~~~  244 (306)
T TIGR02056       239 FQGLIA  244 (306)
T ss_pred             HHHHHH
Confidence            665433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=4.1e-31  Score=256.02  Aligned_cols=265  Identities=16%  Similarity=0.106  Sum_probs=195.7

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcccc
Q 016127          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS  183 (394)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPlas  183 (394)
                      |+|+|++||+++..+.++++.|.++|.+.. +.++.   ..++.+++.+++++++|++||++|+|.|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999998885432 12332   25667889999999999999999999999976  6999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHH-HHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127          184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (394)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~l~~~~~-l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~  261 (394)
                      |++|++++..++.++.++|+.+. ..+|+....... ++.+ ..+.||.     .+||++..+.+..++..+..+..|++
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988844 457765554443 3443 4789995     48999888777766554444444543


Q ss_pred             hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (394)
Q Consensus       262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~  341 (394)
                      .     ..|.    ++...+++.....+|+.......+++|+|||+++|+||+|+++|+|++.+..............+.
T Consensus       151 a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~  221 (280)
T TIGR01473       151 A-----VTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLL  221 (280)
T ss_pred             H-----hcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2     2343    456666667778899998888889999999999999999999999988877664443333333333


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHHh
Q 016127          342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DN-ASILSFYMFIWKAS  391 (394)
Q Consensus       342 g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~-~~~~~Fy~~i~~l~  391 (394)
                      +.....++  .++.++..+.+..+.++.+..|.+ |+ ++.+.|+...+.+.
T Consensus       222 ~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~  271 (280)
T TIGR01473       222 AFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA  271 (280)
T ss_pred             HHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            33333222  334356666777788888888766 54 46788888888764

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.8e-31  Score=258.14  Aligned_cols=268  Identities=14%  Similarity=0.164  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-----C
Q 016127          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----P  177 (394)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk-----~  177 (394)
                      +++|.|++++||++......|++.|.++|.....++++.   ..++++++..++++++|.+||++|.+.|+.|+     |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            368899999999999999999999998886543456543   35678899999999999999999965554443     7


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127          178 YLPLASGEISMGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (394)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~~----~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g  253 (394)
                      +||+++|++|+++++.+..++..+++.++.    ..+. ..+...+++.++++.||.  ||+++|+++ +|++..++.+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence            899999999999999988887666654432    2353 333334567889999995  888899876 57777788888


Q ss_pred             HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      ..+.+|.+..     .++.   +++..+...+...+++...+.+|++||+|+|++.|+||+|+++|+|++ +++..+...
T Consensus       155 ~~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~  225 (296)
T PRK05951        155 HMLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLS  225 (296)
T ss_pred             HHHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHH
Confidence            6666665532     2222   455556666777888888999999999999999999999999999999 666557777


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016127          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  386 (394)
Q Consensus       334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~  386 (394)
                      +|+..+......-.++....+.++.......+.++.++.|.++.+.|..+++.
T Consensus       226 ~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        226 PYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            77755444333222333334445555555566677777777766666666654

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=4.3e-31  Score=255.48  Aligned_cols=205  Identities=24%  Similarity=0.326  Sum_probs=163.4

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas  183 (394)
                      ++|+|++++||+++..+.++.+.|++++.+..++  +.   ..+..+++.++.++++|++||++|+|+|+.|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3689999999999999999988898887544322  21   134566788888999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (394)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~  263 (394)
                      |++|++++..+..++.++|+.+++.+|++.+.+. +.+.++++.||.     ++||.+.++++.++..+|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999988887666554 456677999996     689988889988888777555455432 


Q ss_pred             hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHH
Q 016127          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM  330 (394)
Q Consensus       264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l  330 (394)
                          + +.    ++...++ ....++++.+.++.||++|+|+|+++|+||+|+++|+++++++....
T Consensus       150 ----~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        150 ----V-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ----h-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                2 32    2333222 23356667788999999999999999999999999999998877644

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=3.7e-31  Score=254.76  Aligned_cols=259  Identities=18%  Similarity=0.199  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCc
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP  180 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RP  180 (394)
                      ....++.+++++||..|+.++.++.+|...+.+. .|+.+..   +++.+......+.+.|.+||++|+|+|++|+|+||
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            3456788999999999999999999998776542 2322222   34455666778889999999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127          181 LASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (394)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l----~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~  256 (394)
                      +++|++|++++..+..++.+.    ++.+++..|++.+.+. +++.++.++||.  ||+|+|++|++++++. ..+|.+.
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~  159 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPL  159 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHH
Confidence            999999999998865544433    5566777786555443 567789999995  9999999999998876 3345433


Q ss_pred             hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (394)
Q Consensus       257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (394)
                      ..+      ..+.|.+    .....  .....+|++++++++|++|+||||+.|+||+|+++|+|++.+++..+..++..
T Consensus       160 ~~~------~~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~  227 (292)
T PRK13595        160 ALP------ALALGAP----VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA  227 (292)
T ss_pred             HHH------HHHcCCc----chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH
Confidence            222      1234432    22211  24556888999999999999999999999999999999999999877666544


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016127          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK  389 (394)
Q Consensus       337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~  389 (394)
                      ++....  .+   ..+...+..++.+..++     .|.+.++.-..|-.|+|-
T Consensus       228 ~~~~~~--~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  270 (292)
T PRK13595        228 LLWPVS--RL---TALALWLICGGMALALW-----RRPTPETAHRLYPLSIVT  270 (292)
T ss_pred             HHHHhc--ch---HHHHHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHH
Confidence            333221  11   11112233333333322     677777777788888874

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.6e-30  Score=254.31  Aligned_cols=269  Identities=13%  Similarity=0.142  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R  179 (394)
                      +.++++|++++||+++..+.++++.|+.++...  +.++.   ..+.++++..++++++|++||++|+|+|+.++  ++|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            456889999999999999999999999888533  22332   24556788899999999999999999999764  489


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~-~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      |+|+|++|+++++.++.++.++|+.++. ..|+.......+..+...+.||.     ++||++..+++.+++..+.++..
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~  159 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV  159 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999988654 45754443433334445789995     59999999999988887777777


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (394)
                      |+.+     +.|.    ++...+++....++|+...+...+++|+|||+++|+||+|+++|++++.+..... .+.....
T Consensus       160 G~~a-----~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~-~~~~~~~  229 (306)
T PRK13362        160 GYCA-----VTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLY-ILVFALV  229 (306)
T ss_pred             HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHH-HHHHHHH
Confidence            7653     3343    4566677788889999999999999999999999999999999999888755432 3322222


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh---cCCC-HHHHHHHHHHHHHHhh
Q 016127          339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAV---DLSD-NASILSFYMFIWKASD  392 (394)
Q Consensus       339 ~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v---d~~~-~~~~~~Fy~~i~~l~~  392 (394)
                      .......+.  .+..|.+...+....+++...+.   +.++ +.+.+-|..++|+|.-
T Consensus       230 s~l~~~~g~--~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~  285 (306)
T PRK13362        230 TALLPLAGY--TGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA  285 (306)
T ss_pred             HHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            222222221  11223333333333333333221   2233 3467889999999753

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=2.2e-29  Score=245.40  Aligned_cols=226  Identities=17%  Similarity=0.200  Sum_probs=176.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccc--cCCCCC
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL  179 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~--~~Dr--~nk~~R  179 (394)
                      .+|+|++++||+++..+++|++.|.+++... .++++.   ..++.+++.+++++++|.+|||+|+  +.|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3688999999999999999999998888532 234432   3567788999999999999999998  5675  467899


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~----l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l  255 (394)
                      |+++|++|++++..++.++.++++.++..    .++ ...+..+.+++++++||.  ||.++|+++ ++++..++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            99999999999998887777766555443    353 333334567778899995  888888887 5777777878865


Q ss_pred             hhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 016127          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (394)
Q Consensus       256 ~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~  335 (394)
                      +..+.+.     +..+   .++...++..++.++|+...++.||++|+|+|++.|+||+|+++|++++++++..+..++|
T Consensus       154 ~~~~~~~-----~~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~  225 (293)
T PRK06080        154 IVLGTYY-----LQAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY  225 (293)
T ss_pred             HHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence            5554332     1222   2466667777888999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhc
Q 016127          336 GAAVVVGASS  345 (394)
Q Consensus       336 ~~~~~~g~~~  345 (394)
                      ...+...+..
T Consensus       226 ~~~~~~~~~~  235 (293)
T PRK06080        226 LCIVLLALLG  235 (293)
T ss_pred             HHHHHHHHHh
Confidence            8666554443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=248.97  Aligned_cols=267  Identities=18%  Similarity=0.154  Sum_probs=206.9

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127           95 NSFLNVFLKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (394)
Q Consensus        95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~  171 (394)
                      .+..+..+++++.|.|++|.+.++++.+   |+....+++... ..+ +. +.-+.++-.+.++|++++|.+||+.|+|+
T Consensus        54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdl  130 (353)
T KOG1381|consen   54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-GLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDL  130 (353)
T ss_pred             hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-Ccc-ch-hHHHHHhcccHHHhccCCceehhhhhhhh
Confidence            4445556667999999999999999965   565666666532 111 21 11133445778899999999999999999


Q ss_pred             cccCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127          172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (394)
Q Consensus       172 Dr~nk~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~  249 (394)
                      |+..+|  .||++||++|+++|+.+..+.+.+++.+..++|+....+. ..++.+.+.|+.      +||+++..++.++
T Consensus       131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG  203 (353)
T ss_pred             hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence            998665  8999999999999999999999999999999997666443 567778889996      8999998876665


Q ss_pred             --HHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHH
Q 016127          250 --SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLS  327 (394)
Q Consensus       250 --~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~  327 (394)
                        ++||.  .+||-     ++.|..   .+...+.+++.-..|++.+|++|++||+++|.+.|+|+.+.++|+++..|++
T Consensus       204 ltfnwGA--llGw~-----A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~  273 (353)
T KOG1381|consen  204 LTFNWGA--LLGWC-----ALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS  273 (353)
T ss_pred             hhcchhh--hhcch-----hhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh
Confidence              45553  34543     344442   2333455677778999999999999999999999999999999998766665


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127          328 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  385 (394)
Q Consensus       328 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~  385 (394)
                      . +-......+..+|+.++..|.   |..+.++.+..|.+|+.++|+||+++|..+|.
T Consensus       274 g-f~a~~ia~La~aG~~s~q~~p---yy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~  327 (353)
T KOG1381|consen  274 G-FGAAQIASLAAAGIASDQTWP---YYAALGAVAARLGSQIYKVDIDNPSDCWKKFK  327 (353)
T ss_pred             h-hhHHHHHHHHHhhhccCCCch---HHHHHHHHHHHHHhheeeeecCChHHHHHHHH
Confidence            5 555555667788888887663   34458888899999999999999999988774

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.3e-28  Score=239.93  Aligned_cols=258  Identities=13%  Similarity=0.126  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-------
Q 016127          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN-------  175 (394)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n-------  175 (394)
                      +++++|++++||++......++..|.++|......+++..   .++.+++..++..++|++||+.|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999887777777778777731111233321   233344555555778999999999999864       


Q ss_pred             --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCccccccccc---cchhH
Q 016127          176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN---SFLAA  245 (394)
Q Consensus       176 --k--~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~---~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~---~~~~~  245 (394)
                        |  ++||+++|++|++++..+.+++.++++.++..++..   ..+...+.+.++++.|+.      .||.   | .+.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHH
Confidence              3  489999999999999999999999888887665431   121222345567788884      2342   3 122


Q ss_pred             HHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127          246 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR  325 (394)
Q Consensus       246 ~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~  325 (394)
                      +.+++..+.++..| +.     ..|.    ++...++..++.++|+.+++++||++|+|||++.|+||+|+++|++++++
T Consensus       153 l~G~~~~~~~~~~g-~~-----~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~  222 (297)
T PRK12871        153 LLGRTDFTLFPAAG-YL-----CYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY  222 (297)
T ss_pred             HHHHHHHHHHHHHH-HH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence            22222223333333 21     2343    35555666678899999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 016127          326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFY  384 (394)
Q Consensus       326 l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy  384 (394)
                      +...+..+....  ..+...+.  +...+....++.+..+.+|.+..+.+|++.|-+-|
T Consensus       223 ~i~~~~~l~~l~--~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  277 (297)
T PRK12871        223 WVTGFTALHFLA--AIFFLREL--GPIALYGFLAGFVLLAGANLYLWKEKSQDAGMKIL  277 (297)
T ss_pred             HHHHHHHHHHHH--HHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            666454444332  22333332  22333444466777889999999999888885443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=3.4e-28  Score=239.11  Aligned_cols=222  Identities=13%  Similarity=0.064  Sum_probs=173.3

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC----CCCc
Q 016127          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP  180 (394)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk----~~RP  180 (394)
                      +|.|++++||++...++.|++.|.++|.....++++.   ..+++++++++++.++|.+|||+|.+.|..++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            6789999999999999999999998886443445543   25677888899999999999999987655544    6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127          181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (394)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~  256 (394)
                      +++|.+|+++++..+..+.++++.    +.+..|+ ..+...+++++.++.||.  ||+++||++ +|++..++.+|..+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988777776666    5555674 444445678889999995  899999999 68888788888666


Q ss_pred             hhhHHhhhhhHhhCCCCcCCCHHHH--------------------HHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchh
Q 016127          257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV  316 (394)
Q Consensus       257 ~lg~~~~~~t~v~g~~~~~~~~~~i--------------------~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv  316 (394)
                      ..|.+..     ..+.   +++..+                    +..+...+.+...++.||+||+|+|+++|+||+|+
T Consensus       156 v~g~~yv-----~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v  227 (317)
T PRK13387        156 FLLAVYI-----NTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY  227 (317)
T ss_pred             HHHHHHH-----hcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence            5554432     1111   122111                    24555667778889999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127          317 MLGKERVFRLSVSMLSIAYGAAVVV  341 (394)
Q Consensus       317 ~lG~k~a~~l~~~l~~~a~~~~~~~  341 (394)
                      ++|+|++++++..+..++|+..+..
T Consensus       228 ~lG~~~a~~l~~~l~~~a~l~~~~~  252 (317)
T PRK13387        228 YIGREKGVVLFAILFYASYLAIAVI  252 (317)
T ss_pred             eEcHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988865443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=8.6e-27  Score=225.01  Aligned_cols=218  Identities=20%  Similarity=0.188  Sum_probs=156.3

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (394)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la-~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas  183 (394)
                      +|.+++++||.+|+.+.+|+..|+++| ++.++  +.    .++..++ ....+.+.|.+|||+|.|.|+.|+|++.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            367899999999999999999999888 33332  21    2222232 33344445677999999999999875443 4


Q ss_pred             cccCHHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          184 GEISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       184 G~ls~~~a~~~~~~~~~-----l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      |.+++++..........     .++.+....+ +.++....++++.++.||.  ||.|+|++++.++++.++.......+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~  149 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY  149 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence            88999988543333332     2323333335 4444444678889999995  89999999999986554443322334


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (394)
                      |.+.     + ++.   ++...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.
T Consensus       150 G~~~-----~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        150 GLVL-----A-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             HHHH-----h-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence            4332     2 332   455556667778889999999999999999999999999999999999999999999988866


Q ss_pred             HHHH
Q 016127          339 VVVG  342 (394)
Q Consensus       339 ~~~g  342 (394)
                      +..+
T Consensus       221 ~~~~  224 (282)
T PRK13105        221 LALP  224 (282)
T ss_pred             HHHH
Confidence            6444

>PLN02922 prenyltransferase

Probab=99.96  E-value=1.8e-26  Score=226.44  Aligned_cols=234  Identities=19%  Similarity=0.209  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCCC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL  179 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~R  179 (394)
                      .++++.|++++||++....+.|++.|.++|.....++++..   .++++++.++++.++|.+|||+|.+  .|+.++..+
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            35688899999999999999999999999865434566532   5678899999999999999999975  676432221


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l  255 (394)
                      .-..|  |+++....+.+++++++...+.+    +.|.+++..+++++.+++||.  ||+++|++++ |++..++.+|.+
T Consensus        89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l  163 (315)
T PLN02922         89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL  163 (315)
T ss_pred             CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence            12234  89999887777766655322221    224555555678899999995  9999999985 666667888876


Q ss_pred             hhhhHHhhhhhHhhCC-CCc--CCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127          256 TQFPVYVHIQKYVLGR-PLE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (394)
Q Consensus       256 ~~lg~~~~~~t~v~g~-~~~--~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  332 (394)
                      +..|.|.. ++...+. ...  .+++..++..+...+++.+++++||+||+|+|++.|+||+|+++|+++++++...+..
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            66665542 1110101 000  1344556677888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 016127          333 IAYGAAVVVGAS  344 (394)
Q Consensus       333 ~a~~~~~~~g~~  344 (394)
                      .+|...+.....
T Consensus       243 ~~y~~~i~~v~~  254 (315)
T PLN02922        243 LLYSLLAALGLL  254 (315)
T ss_pred             HHHHHHHHHHHH
Confidence            998865554433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=1.9e-26  Score=223.47  Aligned_cols=216  Identities=18%  Similarity=0.125  Sum_probs=169.1

Q ss_pred             chhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccc--CCCCCcccccccCH
Q 016127          113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM  188 (394)
Q Consensus       113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~--nk~~RPlasG~ls~  188 (394)
                      ||+++..++.|++.|.++|.... .+++.   ..+++++++++++.++|.+|||+|.+  .|+.  .+|.|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999986542 56543   35678889999999999999999984  3543  35789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhch-----HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127          189 GTGIAITLASALMSLAYA----VMIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (394)
Q Consensus       189 ~~a~~~~~~~~~l~l~l~----~~l~~-----~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg  259 (394)
                      +++...+.+++++++.++    +..++     ++++...+++++.+++||.  ||+++|+++ +|++.+++.+|.++..|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence            999988877776555443    33443     1444444667788999995  899999998 57777888888776666


Q ss_pred             HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (394)
Q Consensus       260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~  339 (394)
                      .+.     ++.+   .+++..++..+...+.+.+++..||+||+|+|+++|+||+|+++|+|+++++...+...+|.+.+
T Consensus       154 ~~y-----vq~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       154 TQY-----LQAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            543     2222   25666666666677888999999999999999999999999999999999999999888887655


Q ss_pred             HHHH
Q 016127          340 VVGA  343 (394)
Q Consensus       340 ~~g~  343 (394)
                      +...
T Consensus       226 ~~~~  229 (284)
T TIGR00751       226 VFML  229 (284)
T ss_pred             HHHH
Confidence            5433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=4.9e-26  Score=222.18  Aligned_cols=226  Identities=15%  Similarity=0.107  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPY  178 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~  178 (394)
                      .+++++.|++.+||+++..++.|++.|.++|.....++++.   ..++.+++..+++.++|.+|||+|.+  .|+. ++.
T Consensus         8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~   83 (304)
T PRK07419          8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH   83 (304)
T ss_pred             CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence            34678899999999999999999999999986543456653   35678899999999999999999987  6773 222


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127          179 LPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (394)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~  254 (394)
                       ...++..++++....+.+++++++.+    .+..| |+++...+++++.+++||.  ||+++|++++ |++.+++.+|.
T Consensus        84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~  158 (304)
T PRK07419         84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGP  158 (304)
T ss_pred             -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHH
Confidence             23345557888888777666655544    44456 4555555678889999995  9999999995 88888888887


Q ss_pred             HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA  334 (394)
Q Consensus       255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  334 (394)
                      ++..|.+.     +..+   .+++..+...+...+.+.+++.+||+||+|+|++.|+||+|+++|+|++++++..+...+
T Consensus       159 l~v~g~~y-----v~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~a  230 (304)
T PRK07419        159 LAVAAALY-----SQTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI  230 (304)
T ss_pred             HHHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHH
Confidence            77666553     2222   256666777777888889999999999999999999999999999999999999998889


Q ss_pred             HHHHHHHHH
Q 016127          335 YGAAVVVGA  343 (394)
Q Consensus       335 ~~~~~~~g~  343 (394)
                      |...+....
T Consensus       231 y~~~i~~v~  239 (304)
T PRK07419        231 YALELLPVL  239 (304)
T ss_pred             HHHHHHHHH
Confidence            886554433

>PLN02776 prenyltransferase

Probab=99.95  E-value=1.5e-25  Score=220.41  Aligned_cols=257  Identities=14%  Similarity=0.034  Sum_probs=185.4

Q ss_pred             HHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CCcccccccCH
Q 016127          111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM  188 (394)
Q Consensus       111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~RPlasG~ls~  188 (394)
                      ++||.....+++....|+++|.+..++  +   ..+++.+++..++++++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--L---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            367888888888988999998654333  2   2256678899999999999999999999999764  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh-HHhhhhHHhhhhh
Q 016127          189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQFPVYVHIQK  266 (394)
Q Consensus       189 ~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g-~l~~lg~~~~~~t  266 (394)
                      ++++.+++++.++|+.+ ++.+|+.+..++.+..++....||.      +||++.+.. .++...| +++.+||.     
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~~-~lG~~~Ga~ppL~Gw~-----  143 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPANT-WVGAVVGAIPPLMGWA-----  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchhH-HHHHHHHHHHHHHHHH-----
Confidence            99999999999988855 5667876665543333334678995      899998764 5555556 56666764     


Q ss_pred             HhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016127          267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGAS  344 (394)
Q Consensus       267 ~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~l--G~k~a~~l~~~l~~~a~~~~~~~g~~  344 (394)
                      ++.|+    ++...++++..+++|+........+.|+|||+++|++++|+.-  |+++++.+......+....++..+..
T Consensus       144 Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g  219 (341)
T PLN02776        144 AASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG  219 (341)
T ss_pred             HHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34554    4666677888899999988888889999999999999999976  45555555443322222222222211


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Q 016127          345 SPFLANKLITIIGHGILASIFWLRVRAVDLS-DNASILSFYMFIWKAS  391 (394)
Q Consensus       345 ~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~~~~~~Fy~~i~~l~  391 (394)
                      .   .+..++.++.++.+..+.+.++..+.+ ++.+.+.|+.++++|.
T Consensus       220 ~---~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~  264 (341)
T PLN02776        220 V---TSSPFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP  264 (341)
T ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1   122345566666677777777777544 4567788999999975

>PRK08238 hypothetical protein; Validated

Probab=99.95  E-value=3.2e-26  Score=236.05  Aligned_cols=224  Identities=18%  Similarity=0.240  Sum_probs=174.0

Q ss_pred             eeeecc-CCcceEecCCccccccccCCCCCCCccchhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCC
Q 016127           61 KIASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLT  139 (394)
Q Consensus        61 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~  139 (394)
                      .+..|+ ++++++||++++.++.+++.     +.+...+++.+..+++|++++|||+|.++.+.++ +.+++ +.+.+  
T Consensus       151 Dlp~~~~A~~av~Vn~~~~l~~~a~~~-----~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~--  221 (479)
T PRK08238        151 DLPVWAAARRAIVVGASPGVARAARAL-----GPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD--  221 (479)
T ss_pred             HHHHHHhCCCeEEECCCHHHHHHHHHc-----CCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC--
Confidence            348899 99999999998876644333     6677778888889999999999999999998876 44444 44323  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 016127          140 PAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWA  217 (394)
Q Consensus       140 ~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~  217 (394)
                      +..+...++++++++++++++|++||++|+|+||+|  ||+||+|||++|+++|+.++.+++++|+.+++.+|+ .+...
T Consensus       222 ~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~  300 (479)
T PRK08238        222 LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLV  300 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence            333345677888999999999999999999999997  789999999999999999999999999999999886 44445


Q ss_pred             HHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Q 016127          218 VIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFI  297 (394)
Q Consensus       218 l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i  297 (394)
                      +++++++.++||.     ++||.++++++++++.++..+..|+..      .+.     +.+.+++. +..+......+.
T Consensus       301 ~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~-----~~s~wll~-~~~~~~l~la~~  363 (479)
T PRK08238        301 LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGV-----ALSFWLLA-FSMFFFLSLALV  363 (479)
T ss_pred             HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hcc-----CHHHHHHH-HHHHHHHHHHHH
Confidence            5678888999997     699999999999988777655555432      222     33333322 222334555778


Q ss_pred             HhcCChhhhHHcCC
Q 016127          298 KDLHDVDGDKKFGI  311 (394)
Q Consensus       298 ~d~~D~egD~~~Gi  311 (394)
                      +...|.++++..|.
T Consensus       364 KR~~El~~~~~~~~  377 (479)
T PRK08238        364 KRYTELRRALQRGK  377 (479)
T ss_pred             HhHHHHHHHHhcCC
Confidence            88888888887775

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=6.4e-26  Score=215.26  Aligned_cols=188  Identities=26%  Similarity=0.401  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--CCCCCcccccccCHHHHHHHHHH
Q 016127          120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA  197 (394)
Q Consensus       120 ~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~--nk~~RPlasG~ls~~~a~~~~~~  197 (394)
                      ...+++.|..++.+..  .++.   ..+..+++.++++.++|.+||+.|+|+|+.  |||+||+++|+++++++..++.+
T Consensus         4 ~~~~~l~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGGP--FNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcCC--CCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            3455666644443332  2232   244556666799999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCC
Q 016127          198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT  277 (394)
Q Consensus       198 ~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~  277 (394)
                      +.++++.+++..+++.+... +++.+.+++||   ||+|+||++++++++.++.++.....+++.      .++.   .+
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~  145 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP  145 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence            99999999988887555544 55667779999   678899999999999999888666666543      2322   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127          278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR  325 (394)
Q Consensus       278 ~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~  325 (394)
                      ...++...+..++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            444445555567777788888999999999999999999999999887

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.2e-25  Score=218.16  Aligned_cols=220  Identities=21%  Similarity=0.239  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccc
Q 016127          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (394)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPla  182 (394)
                      +.+++++++.|+.+..........+.. . ....+..+     ....+++.++.+.++|++||+.|+|+|+.|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~-~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYM-A-SLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHH-H-HHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            357899999999876665544433211 1 00011111     3345677888999999999999999999999999988


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcccc-ccccccchhHHHHHHHHhHHhhh-h
Q 016127          183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQF-P  259 (394)
Q Consensus       183 sG~ls~~~a~~~~~~~~~l~l~l~~-~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~-rlKr~~~~~~~~~~~~~g~l~~l-g  259 (394)
                      +++.....+..+..+...+++.+.. ..|++.+.. .+++.++++.||.  ||. ++||.|.+++++.++.||..+.. |
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            6554444444444444444444432 346544433 3556778999996  554 58999999999999999855444 3


Q ss_pred             HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (394)
Q Consensus       260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~  339 (394)
                      ++.      .+.   .++...++..++.+++..+.+.++|++|+|+|+++|+||+|+++|+|++++++..+..+++..++
T Consensus       152 ~~~------~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~  222 (285)
T PRK12872        152 VYY------YQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLI  222 (285)
T ss_pred             HHh------ccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence            332      122   13444455556667778889999999999999999999999999999999999988888877655


Q ss_pred             HH
Q 016127          340 VV  341 (394)
Q Consensus       340 ~~  341 (394)
                      ..
T Consensus       223 ~~  224 (285)
T PRK12872        223 LG  224 (285)
T ss_pred             HH
Confidence            43

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.9e-25  Score=216.10  Aligned_cols=219  Identities=19%  Similarity=0.263  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhhhccccccccCCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPA--VLMHIYVVAINQLSDVEVDKVNKP  177 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~ll~~la~--~l~~~a~~~~Nd~~D~~~Dr~nk~  177 (394)
                      .+..+|.++++.||++|..+..|++.|.++|....++ +++..     +++++.  +..+.+.|++||++|+|+||.|+|
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr   78 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPK   78 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence            3467888999999999999999999999998764332 33321     111111  335566788999999999999877


Q ss_pred             CCc---cc-ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127          178 YLP---LA-SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (394)
Q Consensus       178 ~RP---la-sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g  253 (394)
                      ++.   ++ +|+.+..   ........+++.+.+..++.... .+++++++.+.||.  ||+|+|++++.+..+.++.. 
T Consensus        79 k~~~r~~~~s~~~~~~---~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~-  151 (282)
T PRK12875         79 KDREREVRYRGDRRVL---VAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI-  151 (282)
T ss_pred             ccCCCCccHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH-
Confidence            543   33 2211111   11222333444444444432222 33567788999995  89999999998765543321 


Q ss_pred             HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      +++..+++.     ..|.    ++...  +.+...+|+.+++++||+||+|+|++.|+||+|+++|++++++++..+..+
T Consensus       152 ~~~~~~y~~-----~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~  220 (282)
T PRK12875        152 LPGVAAYAL-----VSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLL  220 (282)
T ss_pred             HHHHHHHHH-----HcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHH
Confidence            222223322     2232    34433  233346899999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHHH
Q 016127          334 AYGAAVVVG  342 (394)
Q Consensus       334 a~~~~~~~g  342 (394)
                      +..+.+..+
T Consensus       221 a~~~~~~~~  229 (282)
T PRK12875        221 AAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHH
Confidence            766555544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=7.3e-25  Score=212.46  Aligned_cols=217  Identities=14%  Similarity=0.120  Sum_probs=166.1

Q ss_pred             HHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCCCcccccc
Q 016127          108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGE  185 (394)
Q Consensus       108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~RPlasG~  185 (394)
                      |++.+||+++..++.|++.|.++|.....++++..   .++++++..+.+.++|.+|||+|.+  .|+.+. .+ ..++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence            78999999999999999999999865434566533   5677889999999999999999976  477422 11 22223


Q ss_pred             cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127          186 ISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (394)
Q Consensus       186 ls~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~  261 (394)
                      .++++....+.++.++++.    +.+..+ |+++...+++++.++.||.  ||+++|++++ |++..++.+|.++..+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            3567777666665555444    344445 4555555678889999995  9999999985 888888888876666654


Q ss_pred             hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (394)
Q Consensus       262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~  341 (394)
                      .     ++.+   .+++..++..+...+.+.+++..||+||+|+|++.|+||+|+++|+|++.++...+...+|++.+..
T Consensus       153 y-----vqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~  224 (285)
T TIGR02235       153 Y-----AQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIA  224 (285)
T ss_pred             H-----HhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHH
Confidence            3     2222   2567667777778888999999999999999999999999999999999999999999999865544

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.94  E-value=1.5e-24  Score=208.09  Aligned_cols=223  Identities=17%  Similarity=0.165  Sum_probs=171.0

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccc----CCC
Q 016127          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP  177 (394)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~----nk~  177 (394)
                      +.+.|++++|||++...+.|++.|.++|......+++   +..+++++++.+++..+|..|||.|.+  .|..    .+.
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            4588999999999999999999999998765434443   347788999999999999999999974  5542    233


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127          178 YLPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (394)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g  253 (394)
                      ++-+...+++++..+.+.+.++..+..+    ....++ .+++..+++++.++.|+.  +|+++.+.|+ |++..++.+|
T Consensus        84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG  159 (303)
T COG1575          84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG  159 (303)
T ss_pred             cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence            4555566677777776666555444433    344454 455556788899999996  8889999984 7777778888


Q ss_pred             HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (394)
Q Consensus       254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  333 (394)
                      .+...+.+.     ++.+   .+++..++..+...+.+..++..|++||+|+|+++|++|+|+++|++.++.+...++..
T Consensus       160 ~l~v~g~~y-----iqt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         160 PLIVLGAYY-----IQTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHH-----Hhcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            665555443     2222   25666666777778888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 016127          334 AYGAAVVV  341 (394)
Q Consensus       334 a~~~~~~~  341 (394)
                      +|.+.++.
T Consensus       232 a~l~~~~~  239 (303)
T COG1575         232 AYLAIVIF  239 (303)
T ss_pred             HHHHHHHH
Confidence            98865543

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5e-25  Score=210.85  Aligned_cols=269  Identities=14%  Similarity=0.102  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--C
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y  178 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~  178 (394)
                      ...++|+|+++++|..+..+++....|+.+|...  ..++..   ++++.++..++..+++++|++.|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5678999999999999999999999999999752  233332   56788999999999999999999999999765  9


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhh
Q 016127          179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (394)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~  257 (394)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+..+.++..++-.+.||.     .+||+.....+++++..++++.
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~Ppl  163 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccceeeeecccccccc
Confidence            9999999999999999999999999887 667865555555556667789997     5899998777777776667888


Q ss_pred             hhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 016127          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA  337 (394)
Q Consensus       258 lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~  337 (394)
                      +||.     ++.|.    ++...+++.+.+++|+...--.=++.-+||.+++|++.+|++-|++.+++.......+...+
T Consensus       164 iGwa-----Avtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~  234 (304)
T COG0109         164 IGWA-----AVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPV  234 (304)
T ss_pred             ceee-----eeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHH
Confidence            8875     45665    35555556666666654333333455667779999999999999999887665332222222


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHh
Q 016127          338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAV-D-LSDNASILSFYMFIWKAS  391 (394)
Q Consensus       338 ~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v-d-~~~~~~~~~Fy~~i~~l~  391 (394)
                      .++... .+  ..+..|.+...+....+++...+. . .|.+++.+-|.+++-+|.
T Consensus       235 sl~~~~-~g--~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~  287 (304)
T COG0109         235 SLLLAL-LG--YVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA  287 (304)
T ss_pred             HHHHHH-hc--cchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            222222 11  122223333333333344433333 2 345678999999988865

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=5.8e-23  Score=198.93  Aligned_cols=174  Identities=21%  Similarity=0.205  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccC
Q 016127          151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSV  230 (394)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~  230 (394)
                      +.+.+...++|++||++|+|+|++|+|+||.+    +.+.+..+..+..++|+.+++..|+ .+ ++ +++.+.++.||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcC
Confidence            44556788899999999999999999999987    7888999999999999999998885 33 23 467778999996


Q ss_pred             C--ccc--cccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 016127          231 Q--LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD  306 (394)
Q Consensus       231 ~--~Pp--~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD  306 (394)
                      +  .+|  +|+|+.+.+|++.+++.||.....+.   + . ..+.    + .+.....++...-.++++.+||++|+|||
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g-~-~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---G-S-YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---H-h-hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            3  224  47899999999999999986432110   0 0 0111    0 11111111112223566789999999999


Q ss_pred             HHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127          307 KKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (394)
Q Consensus       307 ~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~  341 (394)
                      ++.|+||+|+++|+++++++...+..++++++++.
T Consensus       208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~  242 (307)
T PRK13591        208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIA  242 (307)
T ss_pred             HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888754443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=1.8e-22  Score=194.03  Aligned_cols=216  Identities=11%  Similarity=0.117  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHchhhh---HHHHHHHHHHHHhc--cccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q 016127          103 KKFHALYRFMRAYAC---AGVIIATTSNSLLP--VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (394)
Q Consensus       103 ~~l~~~~~l~Rp~~~---~~~~l~~~~g~llA--~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~  177 (394)
                      ++++-|.+-+-|-..   ....+.+ ..+.+.  .++.+++.+  ..+.+++++..++..+++|++||++|+|+||+|+|
T Consensus         3 k~~~iy~~e~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P   79 (299)
T PRK13592          3 KRLNVYLKEMYPLLPRLILSLTLFF-EIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP   79 (299)
T ss_pred             hhHHHHHHHhccchhhhHHHHHHHH-HHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence            356667777666332   2222222 112221  122233433  23456667777888999999999999999999999


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhc-----cCCccccccccccchhHHHHHHHH
Q 016127          178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY-----SVQLPLLRWKGNSFLAAFCMVSLN  252 (394)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Y-----s~~~Pp~rlKr~~~~~~~~~~~~~  252 (394)
                      +||+|||++|+++++.++..+.++++.+.....     .. +...+..+.|     +.     ++||.++.+++.++...
T Consensus        80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-----i~-i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~lt  148 (299)
T PRK13592         80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-----NN-VGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVT  148 (299)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhc
Confidence            999999999999999999888777776664441     11 1122333444     64     68999999999999888


Q ss_pred             hHHhhhh--HHhh-hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHH
Q 016127          253 GLLTQFP--VYVH-IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS  329 (394)
Q Consensus       253 g~l~~lg--~~~~-~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~  329 (394)
                      |..+..|  ++.. ......|.+  ......+++.+..++.++++|+.+|++| |||++ |.+|+|+++|.|++.++..+
T Consensus       149 g~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~  224 (299)
T PRK13592        149 HNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEV  224 (299)
T ss_pred             cchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHH
Confidence            7554333  2211 001112321  1111112333445566899999999999 89986 59999999999999988887


Q ss_pred             HHHHHHH
Q 016127          330 MLSIAYG  336 (394)
Q Consensus       330 l~~~a~~  336 (394)
                      +..++..
T Consensus       225 l~ii~v~  231 (299)
T PRK13592        225 VTLLDIL  231 (299)
T ss_pred             HHHHHHH
Confidence            7655544

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.90  E-value=1.1e-21  Score=190.58  Aligned_cols=150  Identities=21%  Similarity=0.290  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCC
Q 016127          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY  178 (394)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~  178 (394)
                      ..+++++|++++|||+|.++.+.+.++ +++.. ..+  +..+...++++++++++++++|++||+.|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hcc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            345789999999999999999877754 34422 212  112234567788888899999999999999999995  789


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      ||+|||++|++++..++.++.++|+.+++.+|+..+.. .++++++.++||.     ++||.+++++++.++.++..+..
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888654443 4667788899997     79999999999998877655544


Q ss_pred             hH
Q 016127          259 PV  260 (394)
Q Consensus       259 g~  260 (394)
                      |.
T Consensus       157 G~  158 (295)
T PRK12324        157 GG  158 (295)
T ss_pred             HH
Confidence            43

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.7e-14  Score=137.99  Aligned_cols=259  Identities=14%  Similarity=0.119  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL  179 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~R  179 (394)
                      .+.++.|+|+.+|.--+.+++....|+++|...+ +++     .++...++..++.++.|.+||+++.+.|++++|  .|
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R  164 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR  164 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence            4568899999999876777777777888886653 332     256778999999999999999999999999776  99


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127          180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (394)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l  258 (394)
                      |+++|++|+.+|+.++.+....|+.+.++ +|+....++..-.++.+.+|+      .+||.-....=.++.+.+++..+
T Consensus       165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTWVGAVVGAIPPLM  238 (409)
T ss_pred             ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhHHHHHhccCCccc
Confidence            99999999999999999888888776554 776443333222334567788      38987643322222222356666


Q ss_pred             hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHH--HHHHHhcCChhhhHHcCCccchhh---hcHHHHHHHHHHHHHH
Q 016127          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVM---LGKERVFRLSVSMLSI  333 (394)
Q Consensus       259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~--~~~i~d~~D~egD~~~Gi~Tlpv~---lG~k~a~~l~~~l~~~  333 (394)
                      ||..     ..|.    .+...+++...+..|.+-  ..+..++  ++|..+.|.+.+++.   +-++.+.+....++.+
T Consensus       239 GwAA-----asg~----l~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L  307 (409)
T KOG1380|consen  239 GWAA-----ASGL----LDPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPL  307 (409)
T ss_pred             hhhh-----hccC----CCccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhh
Confidence            7643     2333    344455566666666422  1222233  345689999999885   3344566666656555


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 016127          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYMFIWKA  390 (394)
Q Consensus       334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~Fy~~i~~l  390 (394)
                      +|.. ..+++...   .   +.+--...-.++.+...+.  |.|..++.+-|+.++|.|
T Consensus       308 ~~~~-~~~~lT~~---w---f~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL  359 (409)
T KOG1380|consen  308 SYAA-PSTDLTTW---W---FAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL  359 (409)
T ss_pred             hccc-cccCcccc---e---eeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence            5442 22332222   1   1111111222223333222  456678999999999885

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.33  E-value=9.9e-13  Score=120.62  Aligned_cols=230  Identities=13%  Similarity=0.134  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccccCCC
Q 016127          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP  177 (394)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~--~~Dr~nk~  177 (394)
                      ..+.+.|+...||.....++.|...|+++|...  ..|+..   ....+..++....+.++|.+|.|+|.  .+|++...
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l---~~~fl~a~avlavh~agnlvntyfdf~kgid~kkad  134 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL---ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD  134 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH---HHHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence            467889999999999999999999999998643  233332   12334445566688999999999996  58887667


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCccccccccccchhHHHHHHH
Q 016127          178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL  251 (394)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~---~~l~~~~~---~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~  251 (394)
                      +|.+...-+.+.+...+++.+..+|...+   ..++|..+   .+..+.++--.+.|+.+   +.+|...+.+.+ +.+.
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyialgdli-ili~  210 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIALGDLI-ILIL  210 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEeccCEE-EEEe
Confidence            89999988999999888888877655433   33444211   11223343445788864   347776654432 2233


Q ss_pred             HhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHH
Q 016127          252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSML  331 (394)
Q Consensus       252 ~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~  331 (394)
                      +|.+.++-.|. .+   .|.    +.+..+-..+.+.+-+-++...|+.+|.|.||++|+-|+++.+|+..+-.++..++
T Consensus       211 fgpiavlfaf~-~q---~g~----l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~ll  282 (359)
T KOG4581|consen  211 FGPIAVLFAFA-IQ---TGH----LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLL  282 (359)
T ss_pred             echHHHHHHHH-Hh---cCc----eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHH
Confidence            44322221121 11   122    11111111122333456677899999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHhcC
Q 016127          332 SIAYGAAVVVGASSP  346 (394)
Q Consensus       332 ~~a~~~~~~~g~~~~  346 (394)
                      ...|.+..+.+.-+.
T Consensus       283 f~py~lf~i~~~~~s  297 (359)
T KOG4581|consen  283 FAPYLLFFIFALHCS  297 (359)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888987777766554

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=89.52  E-value=1.2  Score=43.85  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHH
Q 016127          151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI  194 (394)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~  194 (394)
                      +...+..+.++..|++.|.|+|+.|+|+.+..  ++..+.++.+
T Consensus       183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            44455666778889999999999998754432  3444444443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.85  E-value=1.9  Score=42.83  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHHHHHH
Q 016127          149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA  199 (394)
Q Consensus       149 ~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~  199 (394)
                      ..+...+..+.....||+.|+|+||.+.+ .-|.   ++..+.+..+...+.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~  242 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence            34555566777789999999999998654 4444   344555554443333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=88.44  E-value=2  Score=42.37  Aligned_cols=66  Identities=20%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             HhhhhccccccccCC-CCCcccccccCHHHHHHHHHHHHH---HHHHHHHHhc-----hHHHHHHHHHHHHHHhhccC
Q 016127          162 AINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL---MSLAYAVMIR-----SPPFIWAVIAWIFVGTAYSV  230 (394)
Q Consensus       162 ~~Nd~~D~~~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~---l~l~l~~~l~-----~~~~~~~l~~~~~l~~~Ys~  230 (394)
                      .+||+.|.|.||.+. +.-|..=|+   +.+..+...+.+   +..+++...+     |...+.....+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999864 456665453   333332222221   1222222222     21223344556667788886

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=87.43  E-value=3.1  Score=40.21  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      .++......++||+-|+|.||.+ .+.-|..-|+
T Consensus       170 ~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        170 IFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            33445555688999999999985 4566665554

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.31  E-value=2.8  Score=41.32  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHH
Q 016127          154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAI  194 (394)
Q Consensus       154 ~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~  194 (394)
                      .+........||+-|+|+||.+.+ .-|.   ++.++.+..+
T Consensus       184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l  222 (304)
T PRK07419        184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL  222 (304)
T ss_pred             HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence            345667778999999999999654 4444   3444444443

>PLN02922 prenyltransferase

Probab=86.85  E-value=3.1  Score=41.27  Aligned_cols=42  Identities=10%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHH
Q 016127          151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT  195 (394)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~  195 (394)
                      +...+..+.....||+.|+|+||.++| .-|.   ++..+.+..+.
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~  237 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence            334456667788999999999999765 4444   34445554433

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.30  E-value=3.9  Score=41.55  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhhhcccccccc-CCCCCcccccc
Q 016127          153 AVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (394)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~  185 (394)
                      .++...+....||+-|+|.|+. +++.-|..-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            3456666778999999999997 46777776664

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=85.58  E-value=8  Score=37.53  Aligned_cols=37  Identities=19%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhhhhcccccccc-CCCCCccccccc
Q 016127          150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI  186 (394)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~l  186 (394)
                      +++.++....-..+|++.|+|.|+. +.|.-|..-|+-
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~  203 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDN  203 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhh
Confidence            3444555556678899999999997 456777766643

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=84.86  E-value=8.4  Score=37.10  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhcCChhhhHHcCCccchhhhcH---HHHHHHHH
Q 016127          287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK---ERVFRLSV  328 (394)
Q Consensus       287 ~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~---k~a~~l~~  328 (394)
                      ..+...+-..+||+-|.|.|++. ++.=|+.-|+   +.++....
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~   89 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAI   89 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHH
Confidence            34445666889999999999988 6777877774   34444443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=84.22  E-value=4.7  Score=39.82  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             HHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       155 l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      +...+....||+.|.|.||.. +|.-|..-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            345556789999999999985 5666765554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=83.99  E-value=4.5  Score=40.43  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      ..++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            344555666688999999999985 4566665453

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=83.62  E-value=11  Score=36.79  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhhhccccccccC-CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016127          151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (394)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~  210 (394)
                      ++..+...+...+|++-|+|.|+.. ++.-|.   ++..+.+..+..++.+++..+-+..+
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666789999999999974 455554   34455565555555555444433333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=83.07  E-value=6.8  Score=38.23  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhhhhccccccccC-CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016127          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (394)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~  210 (394)
                      +.+...+..++||+-|.|.||.+ ++.-|.   ++..+.+..+..++.+++.++...++
T Consensus       169 ~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        169 FFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33446667799999999999985 334443   45667777766666666555444443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=82.99  E-value=6.3  Score=38.81  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       154 ~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      .+...+....||+.|+|.|+.+ +|.-|..-|+
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~  225 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI  225 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence            3456667789999999999985 4556654443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=82.50  E-value=9.5  Score=36.93  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHhhhhccccccccC-CCCCccccc
Q 016127          150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG  184 (394)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG  184 (394)
                      .+..++....-..+||..|+|.|+.. .|.-|..-|
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            33445555566789999999999874 456676666

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=82.28  E-value=6.5  Score=38.40  Aligned_cols=43  Identities=12%  Similarity=0.028  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHHHH
Q 016127          152 PAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA  197 (394)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~~~  197 (394)
                      ...+........||+-|+|+||.+.+ .-|.   ++..+.+..+...
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~  212 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPW  212 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHH
Confidence            33456667788999999999998643 4444   3445555544333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=81.85  E-value=7.3  Score=37.84  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhhhhccccccccCC-CCCcccccccCHHHHHHHHHHHH
Q 016127          151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA  199 (394)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~~~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~  199 (394)
                      +...+........||+-|+|.||.+. +.-|.   ++..+.+..+...+.
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~  221 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL  221 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence            33445566677889999999999864 34444   334444444443333

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=81.15  E-value=7.9  Score=37.49  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=22.3

Q ss_pred             HHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       155 l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      +...+....||+-|.|.||.+ ++.-|..=|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            345556789999999999985 4566665444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=81.11  E-value=8.3  Score=37.43  Aligned_cols=36  Identities=14%  Similarity=0.044  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127          150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (394)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~  185 (394)
                      ++..++....-...|++.|+|.|+.+ .|.-|..-|.
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            33444555555688999999999975 4566665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00