Citrus Sinensis ID: 016136

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----

MSSGDRREAAPAAGEVKNGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccHHcccccccccccccccEEEEEEccccccccccccccccEEEEEEcccccccccEEEEcccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccHHHccccccHHHHHHHHHHccHHHHHHcHHHHcHHHHHHHHHcccccccccccccHHHHHHHHHHcccccHHHHcccHHHHccHHHHHHHHcccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccEEHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHcEEEEEEcccccccccccccccEEEEEEEEccccccccEEEccEEEccEEcccccccccEEEEccccEEEEcccccccccccccccHHHEEEEEEHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHcccccc

mssgdrreaapaagevkngvvsgdlsqrqiqsepasgvvapsqnqrlrlnpskdhkpesyddmqldfspsifsslerylpppmlglnrEEKVKFMREILMKYlpqgertrVQRHRDYRQKIITNYQPLHRELYNLhignffvppfvkaIQDNTEESFRSiisepspgvftfemLQPRFCELLLAEVENFEKWVNEAKFrimrpntmnkygavldDFGLETMLDKLMETYIRPLSKVFFAEvggstldshhgfvveygkdrdvdlgfhvddseVTLNVClgkqftggelffrgtrcekhvntgsqteeifdyshvpgravlhrgrhrhgarattsgHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

mssgdrreaapaagevkngvvsgDLSQRQIQSepasgvvapsqnqrlrlnpskdhkpesYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKylpqgertrvqrhRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAkfrimrpntmnKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRhgarattsghrvnlLLWCRSSVFREMKRYQKDFSSWCGECFREKKERqrlsiaatksellkqegestt

MSSGDRREAAPAAGEVKNGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPgravlhrgrhrhgaraTTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

**************************************************************************LERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFR**************************

************************************************************DDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQ*********RDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWV**************KYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEK**********IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGEC*********************Q******

**************EVKNGVVSGDL****************SQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLH************SGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSE**********

*******************************************NQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQE*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		394	2.2.26 [Sep-21-2011]
Q3ED68		397	Uncharacterized PKHD-type	no	no	0.883	0.876	0.614	1e-135
Q28C22		349	2-oxoglutarate and iron-d	yes	no	0.565	0.638	0.391	2e-39
A3KGZ2		345	2-oxoglutarate and iron-d	yes	no	0.591	0.675	0.377	5e-39
Q6N063		350	2-oxoglutarate and iron-d	no	no	0.614	0.691	0.333	3e-35
Q9CQ04		349	2-oxoglutarate and iron-d	yes	no	0.593	0.670	0.335	9e-35
Q20679		730	Procollagen-lysine,2-oxog	yes	no	0.416	0.224	0.267	3e-08
O60568		738	Procollagen-lysine,2-oxog	no	no	0.411	0.219	0.284	7e-07
Q5R6K5		738	Procollagen-lysine,2-oxog	no	no	0.411	0.219	0.284	7e-07
Q9R0E1		741	Procollagen-lysine,2-oxog	no	no	0.408	0.217	0.280	1e-06
Q5U367		741	Procollagen-lysine,2-oxog	no	no	0.408	0.217	0.280	2e-06

>sp\|Q3ED68\|Y1295_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2	Back alignment and function desciption

 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 214/348 (61%), Positives = 278/348 (79%)

Query: 46  RLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQ 105
           +LR  P+++H+PE+Y+D+ LD+SPS+F+SLERYLP  +L   R +K  FMR++L++Y P 
Sbjct: 39  KLRRTPNEEHEPENYEDLPLDYSPSLFTSLERYLPEQLLNSTRIDKASFMRDLLLRYSPD 98

Query: 106 GERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPS 165
            ER RV RH++YR KI+++YQ LH E+Y L   +FF P F+ A    +E +FRS + E  
Sbjct: 99  TERVRVLRHKEYRDKIMSSYQRLHGEIYTLDPSSFFAPSFLGAFSRKSEPNFRSSMVESY 158

Query: 166 PGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKL 225
           PG+FTFEM +P+FCE+LLAEVE+ EKWV +++  IMRPNTMN +G VLDDFG ++ML KL
Sbjct: 159 PGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRSTIMRPNTMNNFGVVLDDFGFDSMLQKL 218

Query: 226 METYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTG 285
           ++ +I P+++V F EV G++LDSHHG++VEYGKDRDVDLGFHVDDSEV+LNVCLGKQF+G
Sbjct: 219 VDDFISPIAQVLFPEVCGTSLDSHHGYIVEYGKDRDVDLGFHVDDSEVSLNVCLGKQFSG 278

Query: 286 GELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCR 345
           GEL+FRG RC+KHVN+ S  +E++DYSHVPG A+LHRGRHRHGARATTSGHR NL+LWCR
Sbjct: 279 GELYFRGVRCDKHVNSDSTEKEVYDYSHVPGHAILHRGRHRHGARATTSGHRANLILWCR 338

Query: 346 SSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGEST 393
           SS FREMK YQ+DFS WCG C  +K+ RQR SI ATK  L ++  E T
Sbjct: 339 SSTFREMKNYQRDFSGWCGGCKLDKQRRQRDSINATKEILARKAAEKT 386

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q28C22\|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Xenopus tropicalis GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|A3KGZ2\|OGFD2_DANRE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Danio rerio GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q6N063\|OGFD2_HUMAN 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2	Back alignment and function description

>sp\|Q9CQ04\|OGFD2_MOUSE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Mus musculus GN=Ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q20679\|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase OS=Caenorhabditis elegans GN=let-268 PE=1 SV=1	Back alignment and function description

>sp\|O60568\|PLOD3_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1	Back alignment and function description

>sp\|Q5R6K5\|PLOD3_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Pongo abelii GN=PLOD3 PE=2 SV=1	Back alignment and function description

>sp\|Q9R0E1\|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus GN=Plod3 PE=1 SV=1	Back alignment and function description

>sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus GN=Plod3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
359490986		395	PREDICTED: uncharacterized PKHD-type hyd	0.964	0.962	0.781	0.0
255567788		411	oxidoreductase, putative [Ricinus commun	0.992	0.951	0.756	0.0
224135445		391	predicted protein [Populus trichocarpa]	0.946	0.953	0.786	1e-176
356520629		370	PREDICTED: uncharacterized PKHD-type hyd	0.921	0.981	0.780	1e-173
356531172		379	PREDICTED: uncharacterized PKHD-type hyd	0.885	0.920	0.805	1e-172
357500135		371	PKHD-type hydroxylase, putative [Medicag	0.911	0.967	0.763	1e-167
449458771		384	PREDICTED: uncharacterized PKHD-type hyd	0.908	0.932	0.756	1e-167
217075821		371	unknown [Medicago truncatula]	0.911	0.967	0.761	1e-165
255570701		379	oxidoreductase, putative [Ricinus commun	0.906	0.941	0.751	1e-164
297734260		312	unnamed protein product [Vitis vinifera]	0.791	1.0	0.852	1e-162

>gi\|359490986\|ref\|XP_002277437.2\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/402 (78%), Positives = 351/402 (87%), Gaps = 22/402 (5%)

Query: 3   SGDRREAAP-----AAGEVK-----NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPS 52
           S DRRE  P      +G +      NGVVSGD S+  + S            QRLRLNP+
Sbjct: 6   SADRREDPPPPQNNGSGAIASIGGGNGVVSGDSSRPFVPS------------QRLRLNPN 53

Query: 53  KDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQ 112
           KDHKP++YDD+QLDF+PSIFSSLERYLPP ML ++RE KV+FMREIL++YLPQGE+TR Q
Sbjct: 54  KDHKPDNYDDLQLDFNPSIFSSLERYLPPSMLSVSREAKVQFMREILLRYLPQGEQTRAQ 113

Query: 113 RHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFE 172
           RHR+YRQKII+NYQPLHRELY +H   FF P F+KAI DNTEESFRSI+SEPSPGV+TFE
Sbjct: 114 RHREYRQKIISNYQPLHRELYAMHPATFFAPQFLKAINDNTEESFRSIMSEPSPGVYTFE 173

Query: 173 MLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRP 232
           M QP FCELLL EVENFE WVNEAKFRIMRPNTMNK+GAVLDDFGLETMLDKLME +IRP
Sbjct: 174 MFQPHFCELLLHEVENFENWVNEAKFRIMRPNTMNKFGAVLDDFGLETMLDKLMEGFIRP 233

Query: 233 LSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRG 292
           +SKVFF+EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGK+F+GGELFFRG
Sbjct: 234 ISKVFFSEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKEFSGGELFFRG 293

Query: 293 TRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREM 352
           TRC+KHVNTGSQ+EEIFDYSHVPG+AVLHRGRHRHGARATT+GHR+NLLLWCRSS+FREM
Sbjct: 294 TRCDKHVNTGSQSEEIFDYSHVPGKAVLHRGRHRHGARATTAGHRINLLLWCRSSIFREM 353

Query: 353 KRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT 394
           K+YQKDFSSWCGEC REK ERQR+SIAATK ELL++EGESTT
Sbjct: 354 KKYQKDFSSWCGECNREKNERQRMSIAATKLELLRREGESTT 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255567788\|ref\|XP_002524872.1\| oxidoreductase, putative [Ricinus communis] gi\|223535835\|gb\|EEF37496.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224135445\|ref\|XP_002322075.1\| predicted protein [Populus trichocarpa] gi\|222869071\|gb\|EEF06202.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356520629\|ref\|XP_003528963.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|356531172\|ref\|XP_003534152.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|357500135\|ref\|XP_003620356.1\| PKHD-type hydroxylase, putative [Medicago truncatula] gi\|355495371\|gb\|AES76574.1\| PKHD-type hydroxylase, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449458771\|ref\|XP_004147120.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus] gi\|449503401\|ref\|XP_004161984.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|217075821\|gb\|ACJ86270.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255570701\|ref\|XP_002526305.1\| oxidoreductase, putative [Ricinus communis] gi\|223534386\|gb\|EEF36094.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297734260\|emb\|CBI15507.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
TAIR\|locus:2092727		394	AT3G18210 [Arabidopsis thalian	0.936	0.936	0.659	8.5e-136
TAIR\|locus:2017774		397	AT1G22950 [Arabidopsis thalian	0.944	0.937	0.551	1.9e-115
TAIR\|locus:2158327		410	AT5G43660 [Arabidopsis thalian	0.870	0.836	0.495	1.9e-92
TAIR\|locus:2008189		291	AT1G48700 [Arabidopsis thalian	0.718	0.972	0.519	8.5e-81
DICTYBASE\|DDB_G0270778		417	DDB_G0270778 "putative prolyl	0.604	0.570	0.299	1.5e-33
ZFIN\|ZDB-GENE-061215-54		345	zgc:158437 "zgc:158437" [Danio	0.631	0.721	0.355	4.1e-33
UNIPROTKB\|F1NPS1		350	F1NPS1 "Uncharacterized protei	0.642	0.722	0.323	6.9e-31
MGI\|MGI:1913877		349	Ogfod2 "2-oxoglutarate and iro	0.614	0.693	0.310	1e-27
UNIPROTKB\|E2QZH8		351	OGFOD2 "Uncharacterized protei	0.631	0.709	0.309	9.4e-27
RGD\|1310594		349	Ogfod2 "2-oxoglutarate and iro	0.614	0.693	0.303	1.5e-26

TAIR\|locus:2092727 AT3G18210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
 Identities = 244/370 (65%), Positives = 294/370 (79%)

Query:    18 NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLER 77
             NG ++G  S     +   +     S  QRLRLNP+ +H+P+SY+D+QLDF  S++SSLE+
Sbjct:    20 NGTIAGQNSHSAAPTTLRATSTMVSC-QRLRLNPNNEHRPDSYEDLQLDFPNSVYSSLEK 78

Query:    78 YLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHI 137
             YLPP ML  NR+EK+KFM +I++++LP GER+R QRH DYR KI TNYQPLH+ELY L  
Sbjct:    79 YLPPNMLVSNRDEKIKFMTDIMLRHLPHGERSRAQRHSDYRLKITTNYQPLHKELYTLVP 138

Query:   138 GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAK 197
                FVP F+KAI +NTEESFR+IISEPSPGVF F+MLQP FCE++LAE++NFE+WV E K
Sbjct:   139 TVCFVPAFLKAINENTEESFRNIISEPSPGVFVFDMLQPSFCEMMLAEIDNFERWVGETK 198

Query:   198 FRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYG 257
             FRIMRPNTMNKYGAVLDDFGL+TMLDKLME +IRP+SKVFF++VGG+TLDSHHGFVVEYG
Sbjct:   199 FRIMRPNTMNKYGAVLDDFGLDTMLDKLMEGFIRPISKVFFSDVGGATLDSHHGFVVEYG 258

Query:   258 KDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPXX 317
             KDRDVDLGFHVDDSEVTLNVCLG QF GGELFFRGTRCEKHVNT ++ +E +DY H+P  
Sbjct:   259 KDRDVDLGFHVDDSEVTLNVCLGNQFVGGELFFRGTRCEKHVNTATKADETYDYCHIPGQ 318

Query:   318 XXXXXXXXXXXXXXTTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLS 377
                           TT GHRVN+LLWCRSSVFRE+K + KDFSSWCGECF EK++ +  S
Sbjct:   319 AVLHRGRHRHGARATTCGHRVNMLLWCRSSVFRELKTHHKDFSSWCGECFCEKRDEKVRS 378

Query:   378 IAATKSELLK 387
             I A + +L K
Sbjct:   379 IDALRKKLFK 388

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR\|locus:2017774 AT1G22950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158327 AT5G43660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008189 AT1G48700 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0270778 DDB_G0270778 "putative prolyl 4-hydroxylase alpha subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061215-54 zgc:158437 "zgc:158437" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NPS1 F1NPS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1913877 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZH8 OGFOD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1310594 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XV.847.1	hypothetical protein (342 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		394
smart00702		165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	7e-26
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	3e-09

>gnl\|CDD\|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

 Score =  102 bits (255), Expect = 7e-26
 Identities = 48/181 (26%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 175 QPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDK--LMETYIRP 232
            P  C+ LL E E    W  E    I  PN  ++Y       G    L +  L+   IR 
Sbjct: 1   SPAECQKLLEEAEPLG-WRGEVTRGIGNPNETSQY---RQSNGTWLELLERDLVIERIRQ 56

Query: 233 LSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVD-----DSEVTLNVCLGKQFTGGE 287
               F   + G  L +    V  YG       G HVD     D   T  + L     GGE
Sbjct: 57  RLADFLGLLAGLPLSAEDAQVARYGPG--GHYGPHVDNFLYGDRIATFILYLNDVEEGGE 114

Query: 288 LFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLH---RGRHRHGARATTSGHRVNLLLWC 344
           L F G R    V    + ++        G  +      GR  HG    T G R  +  W 
Sbjct: 115 LVFPGLRL--MVVATVKPKK--------GDLLFFPSGHGRSLHGVCPVTRGSRWAITGWI 164

Query: 345 R 345
           R
Sbjct: 165 R 165

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		394
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	100.0
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	99.84
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	99.81
PLN00052		310	prolyl 4-hydroxylase; Provisional	99.55
PHA02813		354	hypothetical protein; Provisional	99.33
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	99.17
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	99.03
PHA02869		418	C4L/C10L-like gene family protein; Provisional	99.01
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	98.89
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	98.39
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	98.21
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	97.32
PF05721		211	PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro:	97.28
PF12851		171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	97.18
TIGR02408		277	ectoine_ThpD ectoine hydroxylase. Both ectoine and	96.99
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	96.81
PF13661		70	2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	96.27
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	96.06
TIGR02466		201	conserved hypothetical protein. This family consis	96.04
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.39
COG3826		236	Uncharacterized protein conserved in bacteria [Fun	94.91
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	94.39
PF03336		339	Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR	92.82
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	88.56
PLN02276		361	gibberellin 20-oxidase	88.39
PLN02904		357	oxidoreductase	87.35
PLN02947		374	oxidoreductase	87.13
PLN02365		300	2-oxoglutarate-dependent dioxygenase	86.98
KOG3710		280	consensus EGL-Nine (EGLN) protein [Signal transduc	86.62
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.71
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.66
PLN02216		357	protein SRG1	84.9
PLN02156		335	gibberellin 2-beta-dioxygenase	84.78
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	84.06
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	83.9
COG3751		252	EGL-9 Predicted proline hydroxylase [Posttranslati	83.83
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	83.29
PLN02485		329	oxidoreductase	82.96
PTZ00273		320	oxidase reductase; Provisional	82.53
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	82.51
PLN02254		358	gibberellin 3-beta-dioxygenase	81.13
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	81.12
PLN02704		335	flavonol synthase	80.84
PF10014		195	2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018	80.12

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1e-64  Score=508.67  Aligned_cols=370  Identities=36%  Similarity=0.489  Sum_probs=351.5

Q ss_pred             CcccCCCCCcccccccCCCCccccccccccccCCCCCCCCCCCCCccccCChhHHHHhhhcCCCccCCCCHHHHHHHHHH
Q 016136           18 NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMRE   97 (394)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~   97 (394)
                      ..+..++.+|.. +...  +.....++.++...||.+|.+++|+|++|+|+++...+||.|+||.+|++.++.|+|||.+
T Consensus         8 f~g~a~~~~q~~-~~~~--~d~~d~ni~ld~~~~~fq~l~g~~~dv~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d   84 (415)
T KOG1971|consen    8 FIGYAPQVHQIV-QWPI--EDTDDLNITLDHRSRIFQNLNGAYEDVVLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLD   84 (415)
T ss_pred             ccccCccccccc-cccc--CcchhhcccccCcCcccccCcCCcCCeeEecccCchhhhhhcCCCcceeeccCccHHHHHH
Confidence            345566777777 5444  4444457789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChhhhhhHHhhHHHHHHHHhccCCCCccccccCCcccCCchhHHHhccccHHhhhhhccccCCcEEEeecCCHH
Q 016136           98 ILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPR  177 (394)
Q Consensus        98 il~~~~~~~~r~~~~~~~~~r~~i~~~Y~plh~ely~lnpe~~l~p~f~~ai~~~~~~~~~~i~~ep~P~Vy~fpvfspe  177 (394)
                      +|.+|+|..++.++..++.||++|.++||+|+-+.|.++|+.++.|+|..+...++++.|+++.+|+.|++|+||||++.
T Consensus        85 ~l~nY~~r~~~~~~l~~~~~r~~~~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~  164 (415)
T KOG1971|consen   85 YLGNYIPREWTGCSLCCKNYRELIKSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPD  164 (415)
T ss_pred             HHhhhcchhhhhhhccccccchhhhhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcccccccccCCCCccccccccc--chHHHHHHHHHHHhhhhhh--------------------
Q 016136          178 FCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDF--GLETMLDKLMETYIRPLSK--------------------  235 (394)
Q Consensus       178 fC~~LIeE~E~f~~Ws~gs~~~i~rPn~mN~ygvvLddi--Gl~~~~~~Ll~~yl~PL~~--------------------  235 (394)
                      ||++++.++|+|+.|+.+++++++|||+|++|+++++++  +|+.+..+|.++|+.||++                    
T Consensus       165 ~~ea~~~evE~~r~~~~dad~~i~~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg  244 (415)
T KOG1971|consen  165 FSEARLMEVEHFRKFSVDADFVITRPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVG  244 (415)
T ss_pred             HHHHHHHHHHHhhhcccccceeccCChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhccccee
Confidence            999999999999999999999999999999999999999  9999999999999999999                    


Q ss_pred             -hhcccccCCCCcccceeEEEEeCC-CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecC
Q 016136          236 -VFFAEVGGSTLDSHHGFVVEYGKD-RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSH  313 (394)
Q Consensus       236 -~LfPe~~g~~Ldsh~~FVVrY~~~-~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~  313 (394)
                       .+||.+++..||+|++|++.|..+ .|+++++|+|++++|+|+||++.|+||+++|.+..|++|..+ .+..++|+++|
T Consensus       245 ~~~~P~v~~~yl~~~~~f~~e~~~~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h  323 (415)
T KOG1971|consen  245 VWNVPYVCGAYLDSHDAFRVESSEDNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSH  323 (415)
T ss_pred             EEeecccceeEEecccceeeeccCcCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcC
Confidence             999999999999999999999655 999999999999999999999999999999999999999876 67889999999


Q ss_pred             CCceEEEecCCCCcCCccCCccc-eeEEEeecchhHHHHHHhhhccccccccccchhHHHHHHHHHHHhHHHHHhhhcc
Q 016136          314 VPGRAVLHRGRHRHGARATTSGH-RVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGE  391 (394)
Q Consensus       314 ~~G~AlLHpGrh~HeglpVTsG~-RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  391 (394)
                      .+|+|+||+|.|.|++.++++|+ +-+++.||.++.+|+|.+|+.+|+.||+.|..+|++++.++..+||...+++.+.
T Consensus       324 ~p~qa~LHrg~~~~~a~~~~~~~~~~nv~~~~~~~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~  402 (415)
T KOG1971|consen  324 DPGQAYLHRGYHKHGARATIVGQPCPNVYWFPISSLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGF  402 (415)
T ss_pred             CCccceecCcchhccccccCCCCCCCceeeehhHHHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhh
Confidence            99999999999999999999999 9999999999999999999999999999999999999999999999999988764

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PHA02813 hypothetical protein; Provisional	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PHA02869 C4L/C10L-like gene family protein; Provisional	Back alignment and domain information

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases	Back alignment and domain information

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []	Back alignment and domain information

>TIGR02408 ectoine_ThpD ectoine hydroxylase	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>TIGR02466 conserved hypothetical protein	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02216 protein SRG1	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		394
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 70/221 (31%)

Query: 20  VVSGDLSQRQIQSEPASGVVA-PSQNQRLRLNPSKD---HK--------PESYDDMQLDF 67
           VV+       ++ +P    ++ PS    L++    +   H+        P+++D    D 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--SDDL 464

Query: 68  SPS-----IFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYR---Q 119
            P       +S    ++   +  +   E++   R +   +L            D+R   Q
Sbjct: 465 IPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMV---FL------------DFRFLEQ 505

Query: 120 KIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFC 179
           KI  +    +     L+            +Q    + ++  I +  P    +E       
Sbjct: 506 KIRHDSTAWNASGSILNT-----------LQQ--LKFYKPYICDNDP---KYER------ 543

Query: 180 ELLLAEVENF----EKWVNEAKF-RIMRPNTMNKYGAVLDD 215
             L+  + +F    E+ +  +K+  ++R   M +  A+ ++
Sbjct: 544 --LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		394
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	99.71
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.7
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.7
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	99.25
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	98.07
2rdq_A		288	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II	97.65
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	97.6
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	97.59
2opw_A		291	Phyhd1 protein; double-stranded beta helix, oxygen	97.35
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	97.18
3gja_A		319	CYTC3; halogenase, beta barrel, biosynthetic prote	96.97
3emr_A		310	ECTD; double stranded beta helix, oxidoreductase;	96.81
3nnf_A		344	CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen	95.49
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	94.79
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	94.56
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	94.42
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	90.26
3pl0_A		254	Uncharacterized protein; quorum sensing, biofilm f	87.87
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	82.88
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	82.52
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	80.5

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

Probab=99.71  E-value=2e-17  Score=157.36  Aligned_cols=160  Identities=16%  Similarity=0.295  Sum_probs=109.7

Q ss_pred             CcEEEee-cCCHHHHHHHHHHHHhhhhhhhcccc-cccccCCCCcccccccccchH-HHHHHHHHHHhhhhhhhhccccc
Q 016136          166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF-RIMRPNTMNKYGAVLDDFGLE-TMLDKLMETYIRPLSKVFFAEVG  242 (394)
Q Consensus       166 P~Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~~-~i~rPn~mN~ygvvLddiGl~-~~~~~Ll~~yl~PL~~~LfPe~~  242 (394)
                      +.++.+| |||+++|++||+.++.- .|..+... ...-....||..+..++. +. .+++.+.. .+..   .  |.+.
T Consensus        19 ~~i~~i~dvLs~~Ec~~li~~~e~~-~~~dg~~t~g~~~~~vr~n~~l~~d~~-~~~~l~~~i~~-~l~~---~--~~f~   90 (243)
T 3dkq_A           19 GMLIEIPNVFSKQEVSHLREQLDAR-RWIDGNQTSGAMATTRKRNQQLDKDDP-VAVALGQQIMD-RLLA---H--PQFV   90 (243)
T ss_dssp             TTBEEECCSSCHHHHHHHHHHHHTS-CCEEECCCSSBSSCCCEEEEECCTTCH-HHHHHHHHHHH-HHHT---C--HHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHHhhC-CCccCcccCCCccccceeeeEECCCCH-HHHHHHHHHHH-HHcc---C--cchh
Confidence            6788886 99999999999999852 35432211 111123345544544443 33 33433332 2211   0  0111


Q ss_pred             CCCCc--ccceeEEEEeCCCCCCCcccccCC-----------ceeEEEeccc--cccCcceEEccccccccccCCCCccc
Q 016136          243 GSTLD--SHHGFVVEYGKDRDVDLGFHVDDS-----------EVTLNVCLGK--QFTGGELFFRGTRCEKHVNTGSQTEE  307 (394)
Q Consensus       243 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-----------evTLNI~Ln~--dFeGGgl~F~~~~c~~hv~~~~~~~e  307 (394)
                      ...|.  .....+.+|.+|+  .+++|+|.+           .+|+.++||+  +|+||+|.|.....            
T Consensus        91 ~~~L~~~~e~~~~~rY~~G~--~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~------------  156 (243)
T 3dkq_A           91 SAALPLQFYPPLFNRYQGGE--TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYG------------  156 (243)
T ss_dssp             HHHCEEEEEEEEEEEECTTC--EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTE------------
T ss_pred             hcccccccccceEEEECCCC--eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCC------------
Confidence            11121  2234589999986  999999963           5899999998  99999999996432            


Q ss_pred             eeeecCCCceEEEecCCCCcCCccCCccceeEEEeecchh
Q 016136          308 IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSS  347 (394)
Q Consensus       308 ~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss  347 (394)
                      ...+.|++|.+|+|++..+|+|.|||+|+||+++.|++|.
T Consensus       157 ~~~V~P~~G~~v~F~s~~lH~v~pV~~G~R~~~~~Wi~s~  196 (243)
T 3dkq_A          157 QQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSM  196 (243)
T ss_dssp             EEEECCCTTCEEEEETTSEEEECCEEEECEEEEEEEEEES
T ss_pred             cEEEecCCCEEEEECCCCeEcCccccccCEEEEEEehhhc
Confidence            1347899999999999999999999999999999999975

PyMOL of 3dkq

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*	Back alignment and structure

>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}	Back alignment and structure

>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}	Back alignment and structure

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		394
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	97.77
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	96.87
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	96.82
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	96.33
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	86.45
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	85.08

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00026  Score=63.48  Aligned_cols=177  Identities=15%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             cEEEee-cCCHHHHHHHHHHHHhhhhh-hhccccccccc------CCCCccccc--ccccchH-HHHHHHHHHHhhhhhh
Q 016136          167 GVFTFE-MLQPRFCELLLAEVENFEKW-VNEAKFRIMRP------NTMNKYGAV--LDDFGLE-TMLDKLMETYIRPLSK  235 (394)
Q Consensus       167 ~Vy~fp-vfspefC~~LIeE~E~f~~W-s~gs~~~i~rP------n~mN~ygvv--LddiGl~-~~~~~Ll~~yl~PL~~  235 (394)
                      |...++ +|+++.|++|.++++..-+. ...........      ...+....+  +..+... .++.-+...-|..+++
T Consensus        23 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  102 (296)
T d2a1xa1          23 GFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVE  102 (296)
T ss_dssp             SEEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCTTSHHHHHHHHCHHHHHHHH
T ss_pred             CEEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhhhchhHHhhcccHHHHHHHH
Confidence            777776 99999999999999875432 11001000000      000011111  2222222 2333222223333434


Q ss_pred             hhcccccCCCCc-ccceeEEEEeC-C-CCCCCcccccCC---------ceeEEEeccc-cccCcceEEcccccc----cc
Q 016136          236 VFFAEVGGSTLD-SHHGFVVEYGK-D-RDVDLGFHVDDS---------EVTLNVCLGK-QFTGGELFFRGTRCE----KH  298 (394)
Q Consensus       236 ~LfPe~~g~~Ld-sh~~FVVrY~~-~-~d~~L~~H~D~S---------evTLNI~Ln~-dFeGGgl~F~~~~c~----~h  298 (394)
                      .++    |..+- .+..++++... + +.....+|.|.+         .+|+-|+|.+ +-+.|.+.|....-.    +|
T Consensus       103 ~ll----g~~~~~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~  178 (296)
T d2a1xa1         103 CFT----GPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH  178 (296)
T ss_dssp             HHH----CSSEEEEEEEEEEECCC--------CCBCGGGGCCEECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCC
T ss_pred             Hhh----ccccceecccccccccccccccccCCcccCccccccCCccccceeeEeeeeccccccccceeccccccccccc
Confidence            443    11111 12223333321 1 223467899954         2688899964 456777877532100    00


Q ss_pred             ---------------ccCCCCccceeeecCCCceEEEecCCCCcCCcc-CCccceeEEEeecchh
Q 016136          299 ---------------VNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARA-TTSGHRVNLLLWCRSS  347 (394)
Q Consensus       299 ---------------v~~~~~~~e~~~~~~~~G~AlLHpGrh~Heglp-VTsG~RynLV~W~rss  347 (394)
                                     +.........+.+..++|.+|+|.++.+|++.+ .|...|+.|++-..++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~~l~Hgs~~N~S~~~R~~l~~~y~~~  243 (296)
T d2a1xa1         179 DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASA  243 (296)
T ss_dssp             CC-----------CCCCC-CCCSCCEEECBCTTCEEEECTTCCEEECCBCSSSCEEEEEEEEEET
T ss_pred             ccccccCCcccccccccchhhccceEEeeecCCcEEEECCCeeecCCCCCCcCceEEEEEEEECC
Confidence                           000000112234567899999999999999988 6678899998866554

PyMOL of d2a1xa1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure