Citrus Sinensis ID: 016154

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHccEEEEEcccccccEEEHHHHHHHHHHHHHHHHccEEEEEcccEEEEccHHHHHHHccccccHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHc
ccccHHHcccccHHHHHcccccccccccccHccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHEEEEEEEEEEEHEEEccccEEEEccHHHHHHHHHHccEEEEEEHHEccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHccHcccccccHEEEEcc
msswsetrsplpllfrrhssgeiknLASVSSsllpafgtvvdeGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLdkstyllvDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTgqlhdgrvfGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAhhkipentwigsqvndfkhrsiWLGYTYSIYWSIVTLTtvgygdlhavntGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRygsknrlpegLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
msswsetrsplpllFRRHSSGEIKNLAsvsssllpafgtvvdeghlRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGElftrlekdirfTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILrygsknrlpEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLvvdfffaadiiftffvaYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFlnllrlwrlrrVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
***************************SVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQ**EVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIA****
**************************************************YVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
*********PLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
************L*************ASVSSSLLPA********HLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
P92960 662 Potassium channel KAT3 OS yes no 0.994 0.592 0.669 1e-147
Q0JKV1 935 Potassium channel AKT1 OS yes no 0.916 0.386 0.573 1e-120
P0C550 935 Potassium channel AKT1 OS N/A no 0.916 0.386 0.573 1e-120
Q38998 857 Potassium channel AKT1 OS no no 0.908 0.417 0.538 1e-112
Q6K3T2 718 Potassium channel KAT1 OS no no 0.921 0.505 0.538 1e-111
A2ZX97 593 Potassium channel KAT6 OS no no 0.916 0.608 0.569 1e-110
Q8H569 907 Potassium channel AKT3 OS no no 0.956 0.415 0.523 1e-108
Q75HP9 855 Potassium channel AKT2 OS no no 0.931 0.429 0.507 1e-106
Q5JM04 502 Potassium channel KAT3 OS no no 0.944 0.741 0.501 1e-106
Q652U9 591 Potassium channel KAT4 OS no no 0.918 0.612 0.538 1e-106
>sp|P92960|KAT3_ARATH Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/393 (66%), Positives = 318/393 (80%), Gaps = 1/393 (0%)

Query: 2   SSWSETRSPLPLL-FRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRY 60
           +S +E RSPL +L FRR SS +++N+ SVSSSLLPAFGT +++ +   K +++  +D RY
Sbjct: 27  ASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRY 86

Query: 61  RWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKST 120
           R W+ FLV+LV YSAWAS FELAF KAA G+LL +DLVVDFFFA DII TFFV+YLD +T
Sbjct: 87  RLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTT 146

Query: 121 YLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRR 180
           YL V DHK IA RY+  + F MDVASTLP QFIY+  TG +  G+ FGFLNLLRLWRLRR
Sbjct: 147 YLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFLNLLRLWRLRR 206

Query: 181 VGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVND 240
           V ELF RLEKD  F YF+ R+ KL+CVT+F +H AGC  +++A H+  P +TWIGSQV D
Sbjct: 207 VAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVED 266

Query: 241 FKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
           FK RS+WLGYTYS+YWSIVTLTTVGYGDLHAVN+ EK FNM YMLFNIGLT+YIIG MTN
Sbjct: 267 FKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTN 326

Query: 301 LIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360
           L+VH A+RT  MR+AIN+ILRY SKNRLP+ +REQMLAHMQL+FKTAEL+QEEVL+DLPK
Sbjct: 327 LVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQLKFKTAELRQEEVLQDLPK 386

Query: 361 AIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMV 393
           AIRSSI+QHLFR  +E+ YLF+G    L+ Q+V
Sbjct: 387 AIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLV 419
Probable modulatory (alpha) subunit of inward-rectifying potassium channels. Could mediate potassium uptake from the soil solution by plant roots in association with AKT1.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1 Back     alignment and function description
>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1 Back     alignment and function description
>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2 Back     alignment and function description
>sp|Q6K3T2|KAT1_ORYSJ Potassium channel KAT1 OS=Oryza sativa subsp. japonica GN=Os02g0245800 PE=2 SV=1 Back     alignment and function description
>sp|A2ZX97|KAT6_ORYSJ Potassium channel KAT6 OS=Oryza sativa subsp. japonica GN=Os01g0718700 PE=3 SV=1 Back     alignment and function description
>sp|Q8H569|AKT3_ORYSJ Potassium channel AKT3 OS=Oryza sativa subsp. japonica GN=Os07g0175400 PE=3 SV=1 Back     alignment and function description
>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1 Back     alignment and function description
>sp|Q5JM04|KAT3_ORYSJ Potassium channel KAT3 OS=Oryza sativa subsp. japonica GN=Os01g0756700 PE=2 SV=1 Back     alignment and function description
>sp|Q652U9|KAT4_ORYSJ Potassium channel KAT4 OS=Oryza sativa subsp. japonica GN=Os06g0254200 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
449503568 639 PREDICTED: potassium channel KAT3-like [ 0.987 0.608 0.799 0.0
449437364 632 PREDICTED: potassium channel KAT3-like [ 0.987 0.615 0.799 0.0
359476400 631 PREDICTED: potassium channel KAT3-like [ 0.987 0.616 0.817 0.0
224141813 633 predicted protein [Populus trichocarpa] 0.992 0.617 0.823 0.0
224089080 586 predicted protein [Populus trichocarpa] 0.984 0.662 0.802 1e-180
255551096 629 Potassium channel KAT3, putative [Ricinu 0.984 0.616 0.823 1e-179
6562375 629 potassium channel [Daucus carota] 0.987 0.618 0.784 1e-174
56744191 639 potassium channel NtKC1 [Nicotiana tabac 0.984 0.607 0.758 1e-173
357466431 624 Potassium channel [Medicago truncatula] 0.972 0.613 0.765 1e-171
297591948 641 potassium channel protein NKT5 [Nicotian 0.987 0.606 0.773 1e-169
>gi|449503568|ref|XP_004162067.1| PREDICTED: potassium channel KAT3-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/389 (79%), Positives = 349/389 (89%)

Query: 5   SETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQ 64
           SETRSP+PLLFRRHSSGEIKNL SVSSSLLPAFGTVV++G+  L K+VI PYD RYRWWQ
Sbjct: 6   SETRSPMPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYTHLNKFVIVPYDRRYRWWQ 65

Query: 65  TFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLV 124
           TFLVVLVVYSAW SPFELAF+K ATGSLL VDLVVD FFA DI+ TFFVAYLDK TYLLV
Sbjct: 66  TFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFAIDIVLTFFVAYLDKGTYLLV 125

Query: 125 DDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGEL 184
           D+HKKIALRY+T L F MDVASTLPFQ IYRIFTG++H    FGFLNLLR WRLRRV +L
Sbjct: 126 DNHKKIALRYLTSLGFPMDVASTLPFQVIYRIFTGRMHRSEAFGFLNLLRFWRLRRVSQL 185

Query: 185 FTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHR 244
           FTRLEKDIRF+YF TRL+KLICVTL AVH+AGCFY++LA HHK  ENTWIG +V DF++R
Sbjct: 186 FTRLEKDIRFSYFYTRLAKLICVTLLAVHTAGCFYYWLAVHHKDSENTWIGIEVEDFQNR 245

Query: 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304
           SIWLGYTYSIYWSIVTLTTVGYGDLHAVN GEK+F++ YML NIGLT+Y+IGNMTNLIVH
Sbjct: 246 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLCNIGLTSYLIGNMTNLIVH 305

Query: 305 SAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRS 364
           +A+RT  MR++INEILRYGSKNRLPEGL++QMLAHMQL+FKTAEL+QE+VLEDLPKAIRS
Sbjct: 306 AAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEQVLEDLPKAIRS 365

Query: 365 SISQHLFRGTVEKTYLFQGVSVDLIAQMV 393
           SI+QHLFR TVE  YLF+G+S DLI Q+V
Sbjct: 366 SIAQHLFRHTVENAYLFKGLSEDLIVQLV 394

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449437364|ref|XP_004136462.1| PREDICTED: potassium channel KAT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359476400|ref|XP_003631831.1| PREDICTED: potassium channel KAT3-like [Vitis vinifera] gi|296081948|emb|CBI20953.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141813|ref|XP_002324257.1| predicted protein [Populus trichocarpa] gi|222865691|gb|EEF02822.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224089080|ref|XP_002308628.1| predicted protein [Populus trichocarpa] gi|222854604|gb|EEE92151.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551096|ref|XP_002516596.1| Potassium channel KAT3, putative [Ricinus communis] gi|223544416|gb|EEF45937.1| Potassium channel KAT3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|6562375|emb|CAB62555.1| potassium channel [Daucus carota] Back     alignment and taxonomy information
>gi|56744191|dbj|BAD81035.1| potassium channel NtKC1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357466431|ref|XP_003603500.1| Potassium channel [Medicago truncatula] gi|355492548|gb|AES73751.1| Potassium channel [Medicago truncatula] Back     alignment and taxonomy information
>gi|297591948|gb|ACJ05642.2| potassium channel protein NKT5 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
TAIR|locus:2005524 662 KAT3 "AT4G32650" [Arabidopsis 0.994 0.592 0.605 7.9e-129
TAIR|locus:2043839 857 KT1 "AT2G26650" [Arabidopsis t 0.908 0.417 0.486 6.5e-90
TAIR|locus:2005531 697 KAT2 "potassium channel in Ara 0.926 0.523 0.456 2.1e-84
TAIR|locus:2170468 677 KAT1 "potassium channel in Ara 0.928 0.540 0.450 4.4e-84
TAIR|locus:2127866 880 KT5 "K+ transporter 5" [Arabid 0.916 0.410 0.440 1.9e-81
TAIR|locus:2132065 802 KT2/3 "potassium transport 2/3 0.931 0.457 0.439 3.4e-77
TAIR|locus:2075442 828 SKOR "STELAR K+ outward rectif 0.850 0.404 0.342 4.6e-51
TAIR|locus:2169866 820 GORK "gated outwardly-rectifyi 0.868 0.417 0.336 9.3e-50
UNIPROTKB|F1MBN0 663 CNGA2 "Cyclic nucleotide-gated 0.845 0.502 0.253 2.1e-22
UNIPROTKB|Q03041 663 CNGA2 "Cyclic nucleotide-gated 0.845 0.502 0.253 2.1e-22
TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1232 (438.7 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
 Identities = 238/393 (60%), Positives = 292/393 (74%)

Query:     2 SSWSETRSPLPLL-FRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRY 60
             +S +E RSPL +L FRR SS +++N+ SVSSSLLPAFGT +++ +   K +++  +D RY
Sbjct:    27 ASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRY 86

Query:    61 RWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLXXXXXXXXXXXXXXXXXYLDKST 120
             R W+ FLV+LV YSAWAS FELAF KAA G+LL +DL                 YLD +T
Sbjct:    87 RLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTT 146

Query:   121 YLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFXXXXXXXXXXX 180
             YL V DHK IA RY+  + F MDVASTLP QFIY+  TG +  G+ FGF           
Sbjct:   147 YLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFLNLLRLWRLRR 206

Query:   181 VGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVND 240
             V ELF RLEKD  F YF+ R+ KL+CVT+F +H AGC  +++A H+  P +TWIGSQV D
Sbjct:   207 VAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVED 266

Query:   241 FKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
             FK RS+WLGYTYS+YWSIVTLTTVGYGDLHAVN+ EK FNM YMLFNIGLT+YIIG MTN
Sbjct:   267 FKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTN 326

Query:   301 LIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360
             L+VH A+RT  MR+AIN+ILRY SKNRLP+ +REQMLAHMQL+FKTAEL+QEEVL+DLPK
Sbjct:   327 LVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQLKFKTAELRQEEVLQDLPK 386

Query:   361 AIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMV 393
             AIRSSI+QHLFR  +E+ YLF+G    L+ Q+V
Sbjct:   387 AIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLV 419
GO:0005242 "inward rectifier potassium channel activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISS;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0010163 "high-affinity potassium ion import" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q03041 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032550001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (631 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 1e-153
pfam00520194 pfam00520, Ion_trans, Ion transport protein 3e-19
pfam0788574 pfam07885, Ion_trans_2, Ion channel 1e-09
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information 
 Score =  451 bits (1162), Expect = e-153
 Identities = 194/371 (52%), Positives = 258/371 (69%), Gaps = 3/371 (0%)

Query: 25  NLASVSSSLLPAFG-TVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELA 83
           +L ++S  +LP  G    ++ H+    ++I+P D RYRWW+T +VVLV YSAW  PFE+A
Sbjct: 25  SLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVA 84

Query: 84  FRKAA-TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTM 142
           F  A+    L I D VVD FFA DI+ TFFVAY+D  T LLV D KKIA+RY++  WF M
Sbjct: 85  FLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLM 143

Query: 143 DVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLS 202
           DVAST+PFQ +  + TG +     +  L LLR WRLRRV +LFTRLEKDIRF+YF  R +
Sbjct: 144 DVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCA 203

Query: 203 KLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLT 262
           +L+ VTLF VH AGC Y+ +A  +     TWIG+ + +F+  S+W+ Y  +IYWSI T+T
Sbjct: 204 RLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMT 263

Query: 263 TVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRY 322
           TVGYGDLHAVNT E +F + YMLFN+GLTAY+IGNMTNL+V    RT+  RN+I     +
Sbjct: 264 TVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNF 323

Query: 323 GSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQ 382
             +NRLP  L++Q+LA+M LRFK   L Q+++++ LPK+I  SI QHLF   VEK YLF+
Sbjct: 324 VGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFK 383

Query: 383 GVSVDLIAQMV 393
           GVS +++  +V
Sbjct: 384 GVSREILLLLV 394

Length = 823
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0500 536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.94
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.85
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.81
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.65
KOG4390 632 consensus Voltage-gated A-type K+ channel KCND [In 99.63
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 99.53
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.36
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 98.91
PRK10537393 voltage-gated potassium channel; Provisional 98.89
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 98.86
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.7
PF01007 336 IRK: Inward rectifier potassium channel; InterPro: 98.24
KOG1418 433 consensus Tandem pore domain K+ channel [Inorganic 97.91
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 97.84
PLN03223 1634 Polycystin cation channel protein; Provisional 97.7
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 97.64
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 97.38
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 97.35
KOG3827 400 consensus Inward rectifier K+ channel [Inorganic i 97.29
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 97.23
KOG4404 350 consensus Tandem pore domain K+ channel TASK3/THIK 97.21
COG4709 195 Predicted membrane protein [Function unknown] 95.61
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 95.51
PF00520200 Ion_trans: Ion transport protein calcium channel s 95.05
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 94.03
TIGR00870743 trp transient-receptor-potential calcium channel p 92.9
PF08006181 DUF1700: Protein of unknown function (DUF1700); In 92.64
KOG3676782 consensus Ca2+-permeable cation channel OSM-9 and 91.69
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 90.08
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 89.44
PLN03192 823 Voltage-dependent potassium channel; Provisional 85.82
PLN03223 1634 Polycystin cation channel protein; Provisional 85.53
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 85.5
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-69  Score=527.50  Aligned_cols=352  Identities=40%  Similarity=0.690  Sum_probs=320.9

Q ss_pred             ccccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccC----------cccchHHHHHHHHHHHHHHHHhhc
Q 016154           42 DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKA----------ATGSLLIVDLVVDFFFAADIIFTF  111 (394)
Q Consensus        42 ~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~if~~Di~l~f  111 (394)
                      +++..+...++++|+|++++.||.+++++++|++++.|+.++|...          ....+.+++.++|++|++||+++|
T Consensus        59 ~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~F  138 (727)
T KOG0498|consen   59 KERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNF  138 (727)
T ss_pred             hcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhh
Confidence            4455666778999999999999999999999999999999999866          446788999999999999999999


Q ss_pred             ceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcC-----CcCCCcchhhhhhHHHHhHHhHHHHHH
Q 016154          112 FVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTG-----QLHDGRVFGFLNLLRLWRLRRVGELFT  186 (394)
Q Consensus       112 ~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~-----~~~~~~~~~~l~l~rllRl~ri~~~~~  186 (394)
                      +|+|.++.+.++|.||++|++||+++ ||++|+++++|++.+......     .........++.+.|++|+.|+.++++
T Consensus       139 rtayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~  217 (727)
T KOG0498|consen  139 RTAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFA  217 (727)
T ss_pred             eEEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999999 999999999999988654331     111114667889999999999999999


Q ss_pred             HHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCC-ceeccc-----cCc----ccccchhhhhHH
Q 016154          187 RLEKDIRFTY--FITRLSKLICVTLFAVHSAGCFYFYLAAHHK--IPEN-TWIGSQ-----VND----FKHRSIWLGYTY  252 (394)
Q Consensus       187 ~~~~~~~~~~--~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~--~~~~-~W~~~~-----~~~----~~~~~~~~~Y~~  252 (394)
                      ++++...+++  ++..+.++++..++.+||.||+||+++..+.  +..+ +|+...     .++    +...+++.+|.+
T Consensus       218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~  297 (727)
T KOG0498|consen  218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVY  297 (727)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHH
Confidence            9999888776  4555789999999999999999999998776  6666 999852     234    677888999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHH
Q 016154          253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGL  332 (394)
Q Consensus       253 sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l  332 (394)
                      |+||+++|+||+|||+.+|+|..|++|+|++|++|.++||+++|++.+++++...+.++|+.++.++++||+++++|++|
T Consensus       298 aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~L  377 (727)
T KOG0498|consen  298 ALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDL  377 (727)
T ss_pred             HHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHHHhhhhcccCCcCCCHHHHHhhcC
Q 016154          333 REQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK  394 (394)
Q Consensus       333 ~~rv~~y~~~~~~~~-~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~~F~~~~~~~l~~L~~  394 (394)
                      |+|+++|++|+|+.+ |.||+++|++||+.||+||+.|+|.+++++||+|+++|+++|.+||+
T Consensus       378 RqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~  440 (727)
T KOG0498|consen  378 RQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCS  440 (727)
T ss_pred             HHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHH
Confidence            999999999999996 99999999999999999999999999999999999999999999984

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
4h33_A137 Crystal Structure Of A Voltage-gated K+ Channel Por 2e-04
3ouf_A97 Structure Of A K+ Selective Nak Mutant Length = 97 4e-04
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
            Y  +++W+IVT TTVGYGD+  V    ++   + MLF I     I   +TN
Sbjct: 43  NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITN 94
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
2ptm_A 198 Hyperpolarization-activated (IH) channel; ION chan 1e-12
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 5e-12
3bpz_A 202 Potassium/sodium hyperpolarization-activated cycli 5e-12
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 5e-12
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 9e-12
1lnq_A 336 MTHK channels, potassium channel related protein; 6e-11
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 2e-10
3ouf_A97 Potassium channel protein; ION channel, membrane, 4e-10
3ukn_A 212 Novel protein similar to vertebrate potassium VOL 8e-10
2q67_A114 Potassium channel protein; inverted teepee, helix 1e-09
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 2e-09
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 5e-09
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 7e-09
2a9h_A155 Voltage-gated potassium channel; potassium channel 1e-08
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 1e-08
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 1e-07
1xl4_A301 Inward rectifier potassium channel; integral membr 2e-07
4f8a_A 160 Potassium voltage-gated channel subfamily H membe; 4e-07
1p7b_A333 Integral membrane channel and cytosolic domains; t 7e-06
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 2e-05
3ukm_A280 Potassium channel subfamily K member 1; membrane p 3e-05
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 3e-04
3sya_A 340 G protein-activated inward rectifier potassium CH; 3e-04
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 15/82 (18%), Positives = 38/82 (46%)

Query: 312 MRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLF 371
            R  + ++  Y    +LP  LR ++L + + R++     +  +  ++ ++IR  ++ +  
Sbjct: 10  YREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC 69

Query: 372 RGTVEKTYLFQGVSVDLIAQMV 393
           R  V     F G   + + ++V
Sbjct: 70  RDLVASVPFFVGADSNFVTRVV 91
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.95
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.93
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.92
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.8
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.75
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.72
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.72
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.7
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.64
2ptm_A 198 Hyperpolarization-activated (IH) channel; ION chan 99.62
3ukn_A 212 Novel protein similar to vertebrate potassium VOL 99.61
3bpz_A 202 Potassium/sodium hyperpolarization-activated cycli 99.6
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.56
2q67_A114 Potassium channel protein; inverted teepee, helix 99.51
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.43
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.42
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.3
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.3
1xl4_A301 Inward rectifier potassium channel; integral membr 99.24
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.14
3um7_A309 Potassium channel subfamily K member 4; potassium 99.12
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.12
3um7_A309 Potassium channel subfamily K member 4; potassium 98.95
3sya_A 340 G protein-activated inward rectifier potassium CH; 98.95
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.94
1ors_C132 Potassium channel; voltage-dependent, voltage sens 98.93
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 98.9
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.84
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.84
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.81
1lnq_A 336 MTHK channels, potassium channel related protein; 98.56
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 85.73
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
Probab=99.95  E-value=1.3e-27  Score=211.20  Aligned_cols=207  Identities=21%  Similarity=0.282  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhh--cccCcccchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhcccc
Q 016154           62 WWQTFLVVLVVYSAWASPFELA--FRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW  139 (394)
Q Consensus        62 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~  139 (394)
                      .||.+++++++++.+.++++..  ++.+....+..+|.+++++|.+|+++|+.++      +    ++    ++|+|+  
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------~----~~----~~y~~~--   72 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------G----DP----AGYVKK--   72 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------S----CH----HHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------c----cH----HHHHHH--
Confidence            5899999999999998877753  4444466788999999999999999999987      1    22    799998  


Q ss_pred             ccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016154          140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLE---KDIRFTYFITRLSKLICVTLFAVHSAG  216 (394)
Q Consensus       140 f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~---~~~~~~~~~~~l~~~~~~~l~~~h~~a  216 (394)
                      +++|+++++|++....... +.   .....+|.+|++|+.|+.+..+...   +.........++..++..++++.|+.+
T Consensus        73 ~iiDllailP~~~~~~~~~-~~---~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~  148 (223)
T 1orq_C           73 TLYEIPALVPAGLLALIEG-HL---AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGA  148 (223)
T ss_dssp             HHHHCTTHHHHHHHHHHHH-HH---HTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999987653111 10   1122445555555555555544211   111111111346667778888899999


Q ss_pred             HHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016154          217 CFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIG  296 (394)
Q Consensus       217 c~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~  296 (394)
                      |+++.++..                .+++...+|.+|+||+++|+||+||||+.|.|+.|++++++.+++|+.++|+++|
T Consensus       149 ~~~~~~e~~----------------~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          149 FAIYIVEYP----------------DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHTTSS----------------STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC----------------CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999987521                1122345799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 016154          297 NMTNLIVH  304 (394)
Q Consensus       297 ~i~~~~~~  304 (394)
                      .+++.+++
T Consensus       213 ~i~~~~~~  220 (223)
T 1orq_C          213 TVSNMFQK  220 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-11
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 1e-08
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 3e-07
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 2e-06
d1q3ea_ 193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 1e-05
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302
           +T S+YW+ VT+ TVGYGD          F +  ++  IG  A  +  +   +
Sbjct: 28  WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.66
d1q3ea_ 193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.58
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.51
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.44
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.1
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 98.77
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 98.34
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.66  E-value=2.9e-16  Score=118.12  Aligned_cols=62  Identities=26%  Similarity=0.451  Sum_probs=56.6

Q ss_pred             hhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 016154          247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR  308 (394)
Q Consensus       247 ~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~  308 (394)
                      ...|.+|+||+++|+||+||||+.|.|+.+|+++++.+++|+.+++++++.+++.+...+++
T Consensus        38 ~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~   99 (103)
T d1r3jc_          38 LITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQE   99 (103)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999887665443
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure