Citrus Sinensis ID: 016155
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | 2.2.26 [Sep-21-2011] | |||||||
| Q80UY1 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.639 | 0.63 | 0.5 | 2e-71 | |
| Q5BJZ6 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.639 | 0.63 | 0.5 | 3e-71 | |
| Q8N4J0 | 409 | UPF0586 protein C9orf41 O | yes | no | 0.639 | 0.616 | 0.492 | 6e-70 | |
| Q9I7X6 | 439 | UPF0586 protein CG11596 O | yes | no | 0.652 | 0.585 | 0.445 | 8e-62 | |
| Q9Y7J3 | 373 | UPF0586 protein C1778.07 | yes | no | 0.705 | 0.745 | 0.415 | 2e-56 | |
| Q54ST2 | 463 | UPF0586 protein OS=Dictyo | yes | no | 0.697 | 0.593 | 0.410 | 6e-55 | |
| P53934 | 400 | UPF0586 protein YNL092W O | yes | no | 0.639 | 0.63 | 0.315 | 1e-34 | |
| Q03648 | 457 | Uncharacterized protein Y | no | no | 0.446 | 0.385 | 0.290 | 2e-06 |
| >sp|Q80UY1|CI041_MOUSE UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 175/260 (67%), Gaps = 8/260 (3%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 184
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 185 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 304
PD+ P S FSM GDF E+Y S+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 363
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 364 TNPRSMMQNRYFTAFWTMRK 383
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
|
Mus musculus (taxid: 10090) |
| >sp|Q5BJZ6|CI041_RAT UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 174/260 (66%), Gaps = 8/260 (3%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 184
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 185 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 304
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 363
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 364 TNPRSMMQNRYFTAFWTMRK 383
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8N4J0|CI041_HUMAN UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 174/260 (66%), Gaps = 8/260 (3%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 184
D+DK++ ++ VRDW+ GK ERD CY+PI++E+ FP R S LVPGAGLGR
Sbjct: 154 DMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGR 213
Query: 185 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 214 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 273
Query: 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 304
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I +
Sbjct: 274 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWK 330
Query: 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 363
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 331 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYT 387
Query: 364 TNPRSMMQNRYFTAFWTMRK 383
N SMM+ Y + +RK
Sbjct: 388 VNDLSMMKYYYECVLFVVRK 407
|
Homo sapiens (taxid: 9606) |
| >sp|Q9I7X6|U586_DROME UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 166/265 (62%), Gaps = 8/265 (3%)
Query: 121 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPACLVPG 179
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 180 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 240 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 299
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 300 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT-I 358
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + GF EK +T I
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 359 ETTYTTNPRSMMQNRYFTAFWTMRK 383
T Y NP SM Q+ Y + FW RK
Sbjct: 353 RTKYAQNPSSMKQSEYQSLFWVCRK 377
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y7J3|YOI7_SCHPO UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 168/289 (58%), Gaps = 11/289 (3%)
Query: 104 GNASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 162
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++
Sbjct: 77 ANAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNS 136
Query: 163 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGE 221
LFP+ S S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + +
Sbjct: 137 LFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQ 196
Query: 222 WNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAW 280
+ +YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 197 FLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSF 256
Query: 281 DAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS------- 333
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF G + S
Sbjct: 257 QVVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHFES-EGTSNSNSDSQQQPF 315
Query: 334 IELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMR 382
+EL+LE + V GFE K +++TTY + RSM++ Y +W R
Sbjct: 316 VELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHPHYWVCR 364
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54ST2|U586_DICDI UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 183/302 (60%), Gaps = 27/302 (8%)
Query: 92 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 149
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 150 DQCYKPILEELDAL-----FPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 204
DQ ++PI ++L + F RSK PGAGLGRL LEI+ LGF SQG E+S+
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSK---IRVYSPGAGLGRLCLEIASLGFSSQGIEYSFM 285
Query: 205 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI-----HPASAGITEG 259
M+I S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E
Sbjct: 286 MLIVSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE- 344
Query: 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL 319
FSM GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLL
Sbjct: 345 FSMSAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLL 400
Query: 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW 379
YH A + + SIELS E ++ + F+F+KE+ + Y +N +S++++ Y F+
Sbjct: 401 YHHA-----KKKDSIELSYEQLRYLICKKQFQFKKEEIRDAEYCSNQKSLLRSIYKCQFF 455
Query: 380 TM 381
+
Sbjct: 456 VV 457
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P53934|YNJ2_YEAST UPF0586 protein YNL092W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL092W PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 49/301 (16%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL 185
D+ K ++ + R+W+AE +ER+ ++ L L P ++ L+PG G GRL
Sbjct: 98 DMSKTCSLLTQVYREWSAEAISERNCLNSRLVPFLKTLSPPKAD-----ILIPGCGTGRL 152
Query: 186 ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245
+++S +G+ +GNEFSY+M++ S ++LN + IYP+IH + DQL P+
Sbjct: 153 LVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIK 212
Query: 246 IPDIHPASAGITEG-FSMCGGDFVEVY--------------------SDPSQVGAWDAVV 284
+PDI S+ G S+C G FV+ Y S + D VV
Sbjct: 213 VPDIEAWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSKDVVV 272
Query: 285 TCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE------------- 331
T FFIDT NI++Y++ I +LK GG+W N GPLLYHF + +G E
Sbjct: 273 TNFFIDTGSNILDYLDTIGHVLKPGGIWCNFGPLLYHFENDHGVETTYEVNPYSGFQDKI 332
Query: 332 ------MSIELSLEDVKRVAL-HYGFEF-EKEKTIETTY--TTNPRSMMQNRYFTAFWTM 381
M +ELS +D+ +A H FE +E I Y P S Y +W +
Sbjct: 333 NDYTPLMGLELSSDDIISIATNHLDFELIRRESGILCGYGRYAGPESCAMPGYMCHYWIL 392
Query: 382 R 382
+
Sbjct: 393 K 393
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q03648|YM59_YEAST Uncharacterized protein YMR209C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR209C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 20/196 (10%)
Query: 134 IRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLV-PGAGLGRLA--LEIS 190
+ ++ RD+++ ERD I+ ++ + +V PGAG+G L+ L +
Sbjct: 210 LAHLCRDFSSYYSVERDPLQNFIISRINHHVISAGDMKEKILIVTPGAGVGGLSHTLATT 269
Query: 191 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS-NCNSLSDSDQLRPVSIPDI 249
E S M IC+ F L E + I P++ +C ++ D +QLR +S D+
Sbjct: 270 FPKIQVDSIELSALMYICNLFAL---EYKHDVKIRPFVQQYSCQTVFD-NQLRSLS-ADL 324
Query: 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEY---IEIISR 304
+ G GDF YS S+ +D ++ C +FIDTA N+ EY IE + +
Sbjct: 325 --SKVGHRSNLDPLWGDFTR-YSPISK--DYDKIIICSAYFIDTAENMFEYLSSIEALKK 379
Query: 305 ILKDGGVWINLGPLLY 320
K+ W+N+GPL Y
Sbjct: 380 YCKELH-WVNVGPLKY 394
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| 296089545 | 498 | unnamed protein product [Vitis vinifera] | 0.979 | 0.775 | 0.72 | 1e-165 | |
| 356577478 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.622 | 0.724 | 1e-162 | |
| 356551269 | 456 | PREDICTED: UPF0586 protein C9orf41 homol | 0.906 | 0.782 | 0.695 | 1e-155 | |
| 449463611 | 492 | PREDICTED: UPF0586 protein C9orf41 homol | 0.959 | 0.768 | 0.707 | 1e-154 | |
| 359493498 | 611 | PREDICTED: uncharacterized protein LOC10 | 0.642 | 0.414 | 0.882 | 1e-150 | |
| 224086635 | 281 | predicted protein [Populus trichocarpa] | 0.692 | 0.971 | 0.919 | 1e-150 | |
| 297822971 | 508 | hypothetical protein ARALYDRAFT_902264 [ | 0.936 | 0.726 | 0.669 | 1e-143 | |
| 30685202 | 504 | N2227-like domain-containing protein [Ar | 0.946 | 0.740 | 0.657 | 1e-142 | |
| 255559134 | 284 | Protein C9orf41, putative [Ricinus commu | 0.675 | 0.936 | 0.875 | 1e-140 | |
| 224147033 | 282 | predicted protein [Populus trichocarpa] | 0.657 | 0.918 | 0.895 | 1e-138 |
| >gi|296089545|emb|CBI39364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/400 (72%), Positives = 319/400 (79%), Gaps = 14/400 (3%)
Query: 1 MSQDMDICEDSHVSHTHYDNQSDG-RNVCSGHSTSSSGRMCCSKGDHADCNEQSKVVETA 59
MSQD D+CE+ H+ + D+ G RN+C + S+SGR+ + D A +S + +
Sbjct: 99 MSQDTDMCENPHLENALDDHLDSGERNICPCEAASTSGRISFPQSDQASYG-KSDITCKS 157
Query: 60 KEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND------------FTDSNGNAS 107
E N+E TE E C N ET+Q+ S+D F DSNGN S
Sbjct: 158 PEGVNNKELGTESCCESGPGICNAYPGNNRETDQAGSSDVKINNDEATPYSFADSNGNVS 217
Query: 108 SPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR 167
S +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD LFPNR
Sbjct: 218 SSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELDGLFPNR 277
Query: 168 SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227
SK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+ +TA EW IYPW
Sbjct: 278 SKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNNAQTAEEWTIYPW 337
Query: 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287
IHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSDPSQ+G WDAVVTCF
Sbjct: 338 IHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDPSQIGVWDAVVTCF 397
Query: 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH 347
FIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQEDEMSIELSLEDVK+VALH
Sbjct: 398 FIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQEDEMSIELSLEDVKKVALH 457
Query: 348 YGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 387
YGF+ EKE+TIETTYTTNPRSMMQNRYF AFWTMRKK V
Sbjct: 458 YGFQMEKERTIETTYTTNPRSMMQNRYFAAFWTMRKKPVA 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577478|ref|XP_003556852.1| PREDICTED: uncharacterized protein LOC100791662 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/396 (72%), Positives = 321/396 (81%), Gaps = 6/396 (1%)
Query: 1 MSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSGRMCCSKGDHADCNEQ-SKVVET 58
MSQD+D ED H T D+ S+G + CS S R+ CS D C E + +
Sbjct: 233 MSQDVDFSEDPHPESTQKDHLVSEGISACSCESVPV--RITCSVSDQHRCVEGGNHTCIS 290
Query: 59 AKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFTDSNGNA--SSPACDWLDP 116
+M +NEE + E + T S + + +ET++ C + DSNGN +S WLDP
Sbjct: 291 QAQMHSNEEVDIESCHQSNTGSHSPSMIHPKETSEYCGSPIADSNGNVPVTSSQQQWLDP 350
Query: 117 SIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACL 176
S++LNVPL DVDKVRCIIRNIVRDWAAEGK ERDQCY PIL+EL+ LFPNRSK+SPPACL
Sbjct: 351 SLKLNVPLVDVDKVRCIIRNIVRDWAAEGKNERDQCYSPILDELNMLFPNRSKDSPPACL 410
Query: 177 VPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236
VPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH++TAGEW IYPWIHSNCNSLS
Sbjct: 411 VPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQTAGEWTIYPWIHSNCNSLS 470
Query: 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 296
DSDQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSD SQVGAWDAVVTCFFIDTAHNIV
Sbjct: 471 DSDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDSSQVGAWDAVVTCFFIDTAHNIV 530
Query: 297 EYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356
EYIEIIS+ILK+GGVWINLGPLLYHFAD+YGQ+DEMSIELSLEDVKRVALHYGFE EKE+
Sbjct: 531 EYIEIISKILKEGGVWINLGPLLYHFADMYGQDDEMSIELSLEDVKRVALHYGFELEKER 590
Query: 357 TIETTYTTNPRSMMQNRYFTAFWTMRKKSVTIVEQA 392
TIETTYT N RSMMQNRYF+AFWTMRKKS + +Q
Sbjct: 591 TIETTYTANSRSMMQNRYFSAFWTMRKKSAAVQQQV 626
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551269|ref|XP_003543999.1| PREDICTED: UPF0586 protein C9orf41 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/398 (69%), Positives = 301/398 (75%), Gaps = 41/398 (10%)
Query: 1 MSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSG---RMCCSKGDHADCNEQSKVV 56
MSQD D ED H D+ S+G + CS S G R + G+H+
Sbjct: 93 MSQDADFSEDPHPESAQKDHLVSEGISACSCESAPEVGIESRHQSNTGNHSP-------- 144
Query: 57 ETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFTDSNGNA--SSPACDWL 114
+L + +ET + C + DS GN +S WL
Sbjct: 145 ---------------------------RLIHTKETREYCGSPIADSKGNVPDTSSQQQWL 177
Query: 115 DPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA 174
PS++LNVPL D DKVRCIIRNIVRDWAAEGK ERDQCY PILEEL+ LFPNRSKESPPA
Sbjct: 178 APSLKLNVPLVDADKVRCIIRNIVRDWAAEGKKERDQCYNPILEELNMLFPNRSKESPPA 237
Query: 175 CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234
CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH++TAGEW IYPWIHSNCNS
Sbjct: 238 CLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQTAGEWTIYPWIHSNCNS 297
Query: 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 294
LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD SQ+GAWDAVVTCFFIDTAHN
Sbjct: 298 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDSSQIGAWDAVVTCFFIDTAHN 357
Query: 295 IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354
IVEYIEIIS+ILKDGGVWINLGPLLYHFAD+YGQ+DEMSIELSLEDVKRVA HYGFEFE
Sbjct: 358 IVEYIEIISKILKDGGVWINLGPLLYHFADMYGQDDEMSIELSLEDVKRVAFHYGFEFEN 417
Query: 355 EKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVTIVEQA 392
E+TIETTYT N RSMMQNRYF AFWTMRKKS + +Q
Sbjct: 418 ERTIETTYTANSRSMMQNRYFAAFWTMRKKSAAVQQQV 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463611|ref|XP_004149525.1| PREDICTED: UPF0586 protein C9orf41 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/400 (70%), Positives = 316/400 (79%), Gaps = 22/400 (5%)
Query: 1 MSQDMDICEDSHVSHTHYDN-------QSDGR------NVCSGHSTSSSGRMCCSKGDHA 47
MSQD D C+ S+ H H D ++G NVCSG TS+SGRMC +
Sbjct: 97 MSQDTDCCDGSYPDHAHDDQFCCRGERNANGNLCSRESNVCSGEPTSTSGRMCSLESKQI 156
Query: 48 DCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFTDSNGNAS 107
C E + ++ K T N+E E + LE +E T++ + +D NGN
Sbjct: 157 CCPEGAS--DSPKASTINQEVEN-------GVNHDQHLEEKEVTDKHSGHCASDCNGNDC 207
Query: 108 SPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR 167
S + +WLDPS+QLNVPL DVDKVRCIIRNIVRDWA EG+ ER+QCYKPILEEL +LFP+R
Sbjct: 208 SSSHEWLDPSLQLNVPLVDVDKVRCIIRNIVRDWAEEGQKEREQCYKPILEELHSLFPDR 267
Query: 168 SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227
KESPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNHT+ GEW IYPW
Sbjct: 268 KKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHTQKVGEWTIYPW 327
Query: 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287
IHSN NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG WDAVVTCF
Sbjct: 328 IHSNSNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGLWDAVVTCF 387
Query: 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH 347
FIDTAHNI+EYIE+IS+ILKDGGVWINLGPLLYHFAD+YGQEDEMSIE SLEDVK++ LH
Sbjct: 388 FIDTAHNIIEYIEVISKILKDGGVWINLGPLLYHFADMYGQEDEMSIEPSLEDVKKIILH 447
Query: 348 YGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 387
YGF FEKE+T+ETTYTTNPRSMMQNRY+ AFWTMRKKS T
Sbjct: 448 YGFVFEKERTVETTYTTNPRSMMQNRYYAAFWTMRKKSAT 487
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493498|ref|XP_003634616.1| PREDICTED: uncharacterized protein LOC100852521 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/282 (88%), Positives = 263/282 (93%)
Query: 106 ASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFP 165
SS +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD LFP
Sbjct: 329 VSSSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELDGLFP 388
Query: 166 NRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 225
NRSK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+ +TA EW IY
Sbjct: 389 NRSKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNNAQTAEEWTIY 448
Query: 226 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 285
PWIHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSDPSQ+G WDAVVT
Sbjct: 449 PWIHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDPSQIGVWDAVVT 508
Query: 286 CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVA 345
CFFIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQEDEMSIELSLEDVK+VA
Sbjct: 509 CFFIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQEDEMSIELSLEDVKKVA 568
Query: 346 LHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 387
LHYGF+ EKE+TIETTYTTNPRSMMQNRYF AFWTMRKK V
Sbjct: 569 LHYGFQMEKERTIETTYTTNPRSMMQNRYFAAFWTMRKKPVA 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086635|ref|XP_002307920.1| predicted protein [Populus trichocarpa] gi|222853896|gb|EEE91443.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/273 (91%), Positives = 261/273 (95%)
Query: 112 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKES 171
DWLDPS+QL VP+ DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEEL++LFP+RS ES
Sbjct: 9 DWLDPSLQLRVPMVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELNSLFPDRSNES 68
Query: 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231
PP CLVPGAGLGRLALEIS LGF+SQGNEFSYYMMICSSFILN TETAGEW IYPWIHSN
Sbjct: 69 PPTCLVPGAGLGRLALEISCLGFVSQGNEFSYYMMICSSFILNQTETAGEWTIYPWIHSN 128
Query: 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT 291
CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG WDAVVTCFFIDT
Sbjct: 129 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDT 188
Query: 292 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351
AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD+YGQEDEMSIELSLEDVKRVAL+YGFE
Sbjct: 189 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADVYGQEDEMSIELSLEDVKRVALNYGFE 248
Query: 352 FEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384
EKE TIETTYTTNPR+MMQNRYF AFWTMRKK
Sbjct: 249 VEKESTIETTYTTNPRAMMQNRYFPAFWTMRKK 281
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822971|ref|XP_002879368.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] gi|297325207|gb|EFH55627.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/390 (66%), Positives = 299/390 (76%), Gaps = 21/390 (5%)
Query: 1 MSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMCCSKGDHADCNEQSKVVE 57
+SQ++D CEDS++ H Y + C T+S C K E+SK +
Sbjct: 127 LSQELDGCEDSNLECAPHERYTLDERHDSSCQPALTNS----CTYK-------EESKHIR 175
Query: 58 TAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND---FTDSNGNASSPACDWL 114
+ EE + + E S + TN++C D +G+ S + DWL
Sbjct: 176 EPITGVSIEELQRK---EAHDHSSKDDSADARITNKTCECDGGQLNHDHGSVSFSSHDWL 232
Query: 115 DPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKES-PP 173
D S+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD+LFP+RSKES PP
Sbjct: 233 DSSLQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPILEELDSLFPDRSKESTPP 292
Query: 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233
ACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+++ GEW IYPWIHSNCN
Sbjct: 293 ACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYSQVPGEWTIYPWIHSNCN 352
Query: 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293
SLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G WDAVVTCFFIDTAH
Sbjct: 353 SLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 412
Query: 294 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 353
N++EYIE IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLEDVKRVA HYGF E
Sbjct: 413 NVIEYIETISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLEDVKRVASHYGFVIE 472
Query: 354 KEKTIETTYTTNPRSMMQNRYFTAFWTMRK 383
KE+TIETTYTTNPR+MMQNRY+TAFWTMRK
Sbjct: 473 KERTIETTYTTNPRAMMQNRYYTAFWTMRK 502
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685202|ref|NP_850185.1| N2227-like domain-containing protein [Arabidopsis thaliana] gi|20259498|gb|AAM13869.1| unknown protein [Arabidopsis thaliana] gi|22136766|gb|AAM91702.1| unknown protein [Arabidopsis thaliana] gi|330253550|gb|AEC08644.1| N2227-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/388 (65%), Positives = 295/388 (76%), Gaps = 15/388 (3%)
Query: 1 MSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMCCSKGDHADCNEQSKVVE 57
+SQ++D CEDS++ H Y + C T+S C K E+SK +
Sbjct: 122 LSQELDGCEDSNLDCAPHERYTLDERHDSSCQPALTNS----CTYK-------EESKHIR 170
Query: 58 TAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFTDSNGNASSPACDWLDPS 117
+ EE + + ++ ++T +G+ S + DWLD S
Sbjct: 171 DPITGVSIEELQRKEAHDHSPKDDSADTRINDKTCDCHEGQLNHDHGSVSFSSHDWLDSS 230
Query: 118 IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKES-PPACL 176
+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD+LFP+R KES PPACL
Sbjct: 231 LQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPILEELDSLFPDRLKESTPPACL 290
Query: 177 VPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236
VPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+ GEW IYPWIHSNCNSLS
Sbjct: 291 VPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVPGEWTIYPWIHSNCNSLS 350
Query: 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 296
D+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G WDAVVTCFFIDTAHN++
Sbjct: 351 DNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAHNVI 410
Query: 297 EYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356
EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLEDVKRVA H+GF EKE+
Sbjct: 411 EYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLEDVKRVASHFGFVIEKER 470
Query: 357 TIETTYTTNPRSMMQNRYFTAFWTMRKK 384
TIETTYTTNPR+MMQNRY+TAFWTMRKK
Sbjct: 471 TIETTYTTNPRAMMQNRYYTAFWTMRKK 498
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559134|ref|XP_002520589.1| Protein C9orf41, putative [Ricinus communis] gi|223540249|gb|EEF41822.1| Protein C9orf41, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/266 (87%), Positives = 248/266 (93%)
Query: 128 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLAL 187
+ VRCIIRNIVRDWA EG+ ERD+CYKPIL+ELD LFPNRSKESPP CLVPGAGLGRLAL
Sbjct: 18 ENVRCIIRNIVRDWADEGQKERDECYKPILDELDLLFPNRSKESPPTCLVPGAGLGRLAL 77
Query: 188 EISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247
EIS LGFISQGNEFSYYMMICSSF+LNHT+TAGEW IYPWIHSNCN LSDSDQLRPVSIP
Sbjct: 78 EISCLGFISQGNEFSYYMMICSSFLLNHTQTAGEWTIYPWIHSNCNLLSDSDQLRPVSIP 137
Query: 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307
DIHPASAGITEGFSMCGGDF+EVYSDPSQ GAWDAVVTCFFIDTAHNI+EYIEIISRILK
Sbjct: 138 DIHPASAGITEGFSMCGGDFIEVYSDPSQAGAWDAVVTCFFIDTAHNIIEYIEIISRILK 197
Query: 308 DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPR 367
DGGVWINLGPLLYHFAD+YGQ+ MSIELSLEDVKRVALH+GF+ EKE IETTYTTNPR
Sbjct: 198 DGGVWINLGPLLYHFADMYGQDVSMSIELSLEDVKRVALHFGFQVEKESRIETTYTTNPR 257
Query: 368 SMMQNRYFTAFWTMRKKSVTIVEQAA 393
SMMQNRYF AFWTMRK S+ I +Q+A
Sbjct: 258 SMMQNRYFAAFWTMRKMSMAIEKQSA 283
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224147033|ref|XP_002336390.1| predicted protein [Populus trichocarpa] gi|222834882|gb|EEE73331.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/259 (89%), Positives = 243/259 (93%)
Query: 130 VRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI 189
VRCI+RNIVRDWAAEG+ ERDQCYKPILEEL++LFP+R +SPP CLVPGAGLGRLALEI
Sbjct: 19 VRCILRNIVRDWAAEGQKERDQCYKPILEELNSLFPSRCNKSPPTCLVPGAGLGRLALEI 78
Query: 190 SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249
S LGF+SQGNEFSYYMMICSSFILN T+ AGEW IYPWIHSNCNSLSDSDQLRPVS PDI
Sbjct: 79 SCLGFVSQGNEFSYYMMICSSFILNQTQNAGEWTIYPWIHSNCNSLSDSDQLRPVSFPDI 138
Query: 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309
HPASAGITEGFSMCGGDFVEVYSDPSQVG WDAVVTCFFIDTAHNIVEYIEIISRILKDG
Sbjct: 139 HPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDTAHNIVEYIEIISRILKDG 198
Query: 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSM 369
GVWINLGPLLYHFAD+YGQEDEMSIELSLEDVK VA +YGFE EKEKTIETTYTTNPRSM
Sbjct: 199 GVWINLGPLLYHFADMYGQEDEMSIELSLEDVKCVAFNYGFEVEKEKTIETTYTTNPRSM 258
Query: 370 MQNRYFTAFWTMRKKSVTI 388
MQNRYF AFWTMRKKS +
Sbjct: 259 MQNRYFAAFWTMRKKSAAV 277
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| TAIR|locus:2045542 | 571 | AT2G32170 [Arabidopsis thalian | 0.543 | 0.374 | 0.799 | 3.1e-122 | |
| TAIR|locus:2045547 | 463 | AT2G32160 "AT2G32160" [Arabido | 0.761 | 0.647 | 0.702 | 3.5e-114 | |
| ZFIN|ZDB-GENE-050306-48 | 373 | zgc:112985 "zgc:112985" [Danio | 0.639 | 0.675 | 0.5 | 4.5e-66 | |
| MGI|MGI:1914633 | 400 | 2410127L17Rik "RIKEN cDNA 2410 | 0.639 | 0.63 | 0.473 | 6.2e-62 | |
| FB|FBgn0023522 | 439 | CG11596 [Drosophila melanogast | 0.652 | 0.585 | 0.418 | 1.1e-53 | |
| ASPGD|ASPL0000056516 | 418 | AN0865 [Emericella nidulans (t | 0.507 | 0.478 | 0.502 | 1.1e-52 | |
| POMBASE|SPBC1778.07 | 373 | SPBC1778.07 "methyltransferase | 0.710 | 0.750 | 0.397 | 1.8e-48 | |
| DICTYBASE|DDB_G0282239 | 463 | DDB_G0282239 "N2227-like domai | 0.705 | 0.600 | 0.391 | 8.8e-47 | |
| UNIPROTKB|G4MPS8 | 418 | MGG_09217 "Uncharacterized pro | 0.522 | 0.492 | 0.403 | 1.2e-40 | |
| CGD|CAL0000364 | 395 | orf19.592 [Candida albicans (t | 0.342 | 0.341 | 0.349 | 2.6e-33 |
| TAIR|locus:2045542 AT2G32170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 3.1e-122, Sum P(3) = 3.1e-122
Identities = 171/214 (79%), Positives = 187/214 (87%)
Query: 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230
+PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+ GEW IYPWIHS
Sbjct: 352 TPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVPGEWTIYPWIHS 411
Query: 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID 290
NCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G WDAVVTCFFID
Sbjct: 412 NCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFID 471
Query: 291 TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGX 350
TAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLEDVKRVA H+G
Sbjct: 472 TAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLEDVKRVASHFGF 531
Query: 351 XXXXXXXXXXXXXXNPRSMMQNRYFTAFWTMRKK 384
NPR+MMQNRY+TAFWTMRKK
Sbjct: 532 VIEKERTIETTYTTNPRAMMQNRYYTAFWTMRKK 565
|
|
| TAIR|locus:2045547 AT2G32160 "AT2G32160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 215/306 (70%), Positives = 243/306 (79%)
Query: 85 LENREE--TNQSCSND---FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVR 139
L+N E N++C D +G+ + DWLD S+Q +VPL DV+KVR +IRNIVR
Sbjct: 152 LKNAEIRLNNKTCEFDGGHLNHDHGSVPFSSHDWLDSSLQAHVPLVDVNKVRWVIRNIVR 211
Query: 140 DWAAEGKTERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQG 198
DW AEG+ ERD+CYKPILEELD+LFP+R KES PACLVPGAGLGRLALEIS LGF SQG
Sbjct: 212 DWGAEGQRERDECYKPILEELDSLFPDRHKESTRPACLVPGAGLGRLALEISCLGFRSQG 271
Query: 199 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITE 258
NE SYYMM+CSSFILN+T+ GEW IYPWIH+NCNSLSD DQLRP+SIPDIHPASAG+TE
Sbjct: 272 NEVSYYMMLCSSFILNYTQLPGEWTIYPWIHTNCNSLSDDDQLRPISIPDIHPASAGVTE 331
Query: 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318
FSMC GDFVEV+++ SQ G WDAVVTCFFIDTAHNI+EYIE IS+ILKDGGV INLGPL
Sbjct: 332 SFSMCRGDFVEVFNESSQAGMWDAVVTCFFIDTAHNIIEYIETISKILKDGGVLINLGPL 391
Query: 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAF 378
LYHFAD G E+EMSIELSLEDVKRVA HYG NPRSMM+NRY+ F
Sbjct: 392 LYHFADEQGLENEMSIELSLEDVKRVASHYGFEMEKEKTIETTYSTNPRSMMKNRYYPVF 451
Query: 379 WTMRKK 384
WTMRKK
Sbjct: 452 WTMRKK 457
|
|
| ZFIN|ZDB-GENE-050306-48 zgc:112985 "zgc:112985" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 130/260 (50%), Positives = 171/260 (65%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFP-NRSKESPPACLVPGAGLGR 184
D+DK++ I+ VRDW+ GK ERD CYKPI++E+ LFP ++ S LVPGAGLGR
Sbjct: 117 DMDKLKSTIKQFVRDWSEAGKAERDSCYKPIIDEIQRLFPPDQCDVSQVRVLVPGAGLGR 176
Query: 185 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244
LA EI+HLG+ QGNE+S++M+ S+F+LN + +YPWIH N+ + SDQ RPV
Sbjct: 177 LAWEIAHLGYSCQGNEWSFFMLFSSNFVLNRCDKENALTLYPWIHQFSNNKASSDQTRPV 236
Query: 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 304
S PD++P S FSM GDF EVY+DP WD V TCFFIDTAHN+++YIE I
Sbjct: 237 SFPDVNPQSLPEDSDFSMVAGDFQEVYNDPEM---WDCVATCFFIDTAHNVLDYIETIWN 293
Query: 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX-XXXX 363
ILK GGVW+NLGPLLYH+ ++ +E+SIELS ED+K VA+ YG
Sbjct: 294 ILKPGGVWLNLGPLLYHYENM---ANELSIELSYEDIKAVAMKYGFVLELERESVPSTYT 350
Query: 364 XNPRSMMQNRYFTAFWTMRK 383
N RSM++ Y + F+ +RK
Sbjct: 351 ENDRSMLKYLYDSVFFIVRK 370
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| MGI|MGI:1914633 2410127L17Rik "RIKEN cDNA 2410127L17 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 123/260 (47%), Positives = 164/260 (63%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 184
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 185 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 304
PD+ P S FSM GDF E+YS+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIYSE---CNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXX 364
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YG
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 365 -NPRSMMQNRYFTAFWTMRK 383
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
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| FB|FBgn0023522 CG11596 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 111/265 (41%), Positives = 158/265 (59%)
Query: 121 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA-CLVPG 179
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 180 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 240 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 299
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 300 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX 359
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + G
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 360 XXXXX-NPRSMMQNRYFTAFWTMRK 383
NP SM Q+ Y + FW RK
Sbjct: 353 RTKYAQNPSSMKQSEYQSLFWVCRK 377
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| ASPGD|ASPL0000056516 AN0865 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 105/209 (50%), Positives = 134/209 (64%)
Query: 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR-SKESPPACLVPGAGLG 183
AD++K IR RDW+AEG+ ER+ CY P+L +LD FP++ +E LVPGAGLG
Sbjct: 126 ADINKAHSTIRQFYRDWSAEGQAEREACYIPVLRDLDLEFPDKLEREEFVKVLVPGAGLG 185
Query: 184 RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 243
RL EI GF ++GNE SY+ ++ SS++LNHTE A +YP+ N LS QLR
Sbjct: 186 RLVFEICRAGFAAEGNEISYHQLLASSWVLNHTEGAQRHALYPFALHFSNILSREQQLRK 245
Query: 244 VSIPDIHPASA-------GITEG-FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 295
V IPD+HPA+A G G SM DFV +YS PSQ A+DAV T FFIDTA N+
Sbjct: 246 VMIPDVHPATAMLEAQASGTPFGTMSMSAADFVVLYSSPSQTDAFDAVATVFFIDTAPNL 305
Query: 296 VEYIEIISRILKDGGVWINLGPLLYHFAD 324
+ YIE + LK G+WIN+GPLL+HF D
Sbjct: 306 IRYIEAVRNCLKSNGIWINVGPLLWHFED 334
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| POMBASE|SPBC1778.07 SPBC1778.07 "methyltransferase N2227 family" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 116/292 (39%), Positives = 164/292 (56%)
Query: 105 NASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 163
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++L
Sbjct: 78 NAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSL 137
Query: 164 FPNRSKE-SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEW 222
FP+ S + S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + ++
Sbjct: 138 FPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQF 197
Query: 223 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 281
+YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 198 LVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQ 257
Query: 282 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS-------I 334
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF + G + S +
Sbjct: 258 VVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHF-ESEGTSNSNSDSQQQPFV 316
Query: 335 ELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAFWTMR-KKS 385
EL+LE + V G + RSM++ Y +W R +KS
Sbjct: 317 ELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHPHYWVCRLQKS 368
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| DICTYBASE|DDB_G0282239 DDB_G0282239 "N2227-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 117/299 (39%), Positives = 174/299 (58%)
Query: 92 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 149
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 150 DQCYKPILEELDALFPNR--SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207
DQ ++PI ++L ++ + + S PGAGLGRL LEI+ LGF SQG E+S+ M+I
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLI 288
Query: 208 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH-----PASAGITEGFSM 262
S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E FSM
Sbjct: 289 VSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE-FSM 347
Query: 263 CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF 322
GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLLYH
Sbjct: 348 SAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLLYHH 403
Query: 323 ADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAFWTM 381
A ++D SIELS E ++ + N +S++++ Y F+ +
Sbjct: 404 AK---KKD--SIELSYEQLRYLICKKQFQFKKEEIRDAEYCSNQKSLLRSIYKCQFFVV 457
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| UNIPROTKB|G4MPS8 MGG_09217 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 92/228 (40%), Positives = 134/228 (58%)
Query: 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE----SPPA------- 174
D+DK R +R RDW+AEG+ ER+ Y P+ + L + R +E SPP+
Sbjct: 113 DIDKARSTLRQFYRDWSAEGRPEREASYGPVKQYLQHMEQVRIQEWFGPSPPSPLPSLPP 172
Query: 175 --CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232
LVPGAGLGRL ++ LG+ +GNE SY+ ++ SS++LN A + IYPW+ S
Sbjct: 173 LKVLVPGAGLGRLVFDLCDLGYEVEGNEISYHQLLASSYVLNRAPAARQHTIYPWVQSFS 232
Query: 233 NSLSDSDQLRPVSIPDIHPASAGITE-----GFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287
N S ++Q R ++PD+HPA+ T SM DF+ +Y +Q +DAV + F
Sbjct: 233 NHASRANQFRSYAVPDVHPATQLATPTKAGGSMSMSAADFLCLYEQEAQRERFDAVASVF 292
Query: 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----YGQEDE 331
F+DTA N++ YIE I L+ GGV IN+GPLL+HF D +G++D+
Sbjct: 293 FLDTAPNLIRYIEAIRNCLRPGGVLINVGPLLWHFEDNAPGNHGRDDD 340
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| CGD|CAL0000364 orf19.592 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 51/146 (34%), Positives = 83/146 (56%)
Query: 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFIS 196
++R+W+ EG+ ERD + I+ EL+ L+P+ L PG GLGRL +E+ GF +
Sbjct: 107 LMREWSDEGQAERDVAFTRIISELEELYPDEPSRQSIRILNPGCGLGRLVMELVIRGFWT 166
Query: 197 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP----- 251
QGNE SY+M++ S+FILNH++ +I+P++ + + + Q R ++IPD+ P
Sbjct: 167 QGNEISYHMLLASNFILNHSQFPHSHSIFPFLSRSSHLVKRKYQTRGITIPDVAPFAVLS 226
Query: 252 ------ASAGITEGFSMCGGDFVEVY 271
S E S+ G F+E+Y
Sbjct: 227 ELKEKTPSIAYEELMSITAGSFLELY 252
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00001792001 | SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (513 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00000534001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (338 aa) | • | • | 0.437 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 394 | |||
| pfam07942 | 268 | pfam07942, N2227, N2227-like protein | 1e-147 |
| >gnl|CDD|219653 pfam07942, N2227, N2227-like protein | Back alignment and domain information |
|---|
Score = 417 bits (1073), Expect = e-147
Identities = 159/273 (58%), Positives = 194/273 (71%), Gaps = 8/273 (2%)
Query: 116 PSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPA 174
P +NV D+ KVR +R IVRDW+AEG+ ERD YKPI+EEL+ LFP+RS + S
Sbjct: 1 PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIR 60
Query: 175 CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234
LVPGAGLGRLA E++ LG+ QGNEFSY+M++CS+FILN+ + + IYP+IHS N
Sbjct: 61 ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ 120
Query: 235 LSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293
L+ DQLRPV IPD+HP S G FSMC GDF+EVY + + ++D VVTCFFIDTAH
Sbjct: 121 LTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDA--NSYDVVVTCFFIDTAH 178
Query: 294 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 353
N++EYI+ I +ILK GG WINLGPLLYHF L DEMSIELSLED+KR+A GF+ E
Sbjct: 179 NVLEYIDTIEKILKPGGHWINLGPLLYHFEPL---PDEMSIELSLEDIKRLATKRGFKDE 235
Query: 354 KEKT-IETTYTTNPRSMMQNRYFTAFWTMRKKS 385
KE+T I YTTN SMMQ Y FW RK
Sbjct: 236 KEETGILNGYTTNYESMMQGYYGCVFWVARKPP 268
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This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. Length = 268 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 100.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 100.0 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.68 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.68 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.67 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.67 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.66 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.65 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.63 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.63 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.62 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.62 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.61 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.61 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.58 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.53 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.53 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.51 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.51 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.5 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.5 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.47 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.47 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.46 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.45 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.45 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.41 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.4 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.39 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.38 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.37 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.34 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.33 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.33 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.33 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.33 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.32 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.3 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.29 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.29 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.29 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.29 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.29 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.28 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.28 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.26 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.24 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.23 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.22 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.21 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.19 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.18 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.17 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.16 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.16 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.15 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.12 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.12 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.11 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.08 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.06 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.05 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.04 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.04 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.03 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.03 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.03 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.01 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.99 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.97 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.96 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.95 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.95 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.94 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.94 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.92 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.91 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.9 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.9 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.87 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.87 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.86 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.83 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.83 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.81 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.8 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.8 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.79 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.78 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.72 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.72 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.72 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.72 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.71 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.71 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.68 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.68 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.68 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.63 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.58 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.58 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.55 | |
| PLN02366 | 308 | spermidine synthase | 98.52 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.49 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.48 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.48 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.48 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.48 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.47 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.47 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.45 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.44 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.44 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.41 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.41 | |
| PLN02476 | 278 | O-methyltransferase | 98.4 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.4 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.39 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.39 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.36 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.33 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.3 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.29 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.26 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.26 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.25 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.23 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.22 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.2 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.2 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.17 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.16 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.15 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.15 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.13 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.12 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.12 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.1 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.07 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.07 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.06 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.04 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.03 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.03 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.02 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.99 | |
| PLN02823 | 336 | spermine synthase | 97.97 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.92 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.9 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.9 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.9 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.87 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.81 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.8 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.78 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.74 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.67 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.65 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.61 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.61 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.58 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.53 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.52 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.52 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.47 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.47 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.42 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.41 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.35 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.25 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.25 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.25 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.21 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.16 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.16 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.03 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.02 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.9 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.81 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.81 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.78 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.72 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.54 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.52 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.47 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.46 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.43 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.43 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.37 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.32 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.29 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.29 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.26 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.21 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.16 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.07 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.03 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.79 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.78 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.77 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.76 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.71 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.7 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.68 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.39 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 95.34 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.22 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.84 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.74 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.69 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.62 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.56 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.4 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.2 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.01 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.96 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.9 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.79 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 93.78 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.67 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.44 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 93.13 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.07 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 92.91 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.78 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 92.58 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.26 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.05 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 91.93 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.64 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.63 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.49 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.09 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 90.79 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 90.22 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 90.15 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.14 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 89.3 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 89.04 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 88.8 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 88.38 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 88.15 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 87.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 87.72 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 87.62 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 87.15 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 87.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 86.94 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 86.86 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.84 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 86.42 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.34 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 85.85 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 85.69 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 85.62 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 85.57 | |
| PLN02494 | 477 | adenosylhomocysteinase | 85.27 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 85.23 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 84.38 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 84.01 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 83.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 83.51 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.43 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 83.38 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.01 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 82.98 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 82.95 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 82.73 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 82.72 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 82.7 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 82.58 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 82.52 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 82.42 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 82.34 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 82.17 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 81.59 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 81.24 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 81.23 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 80.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 80.47 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 80.12 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.02 |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-83 Score=616.52 Aligned_cols=266 Identities=55% Similarity=0.990 Sum_probs=246.9
Q ss_pred CCCCCCcCCCCCCcchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHH
Q 016155 112 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEIS 190 (394)
Q Consensus 112 ~~~~~~~~~~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~-~~~~~~~~VLvpGCGlGRLa~eLA 190 (394)
+|..++ ..|++||+++|+|++||||+||+.||+++|+||+++|++++|. ...+.+.+|||||||+||||+|||
T Consensus 2 ~~~~~~------~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 2 EWVHPS------PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred CcccCc------hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHh
Confidence 455555 7999999999999999999999999999999999999999995 334578999999999999999999
Q ss_pred HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC-CCCCCceeEEeccccc
Q 016155 191 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVE 269 (394)
Q Consensus 191 ~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDf~e 269 (394)
++||.|+|||+|++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. .....+|+|++|||++
T Consensus 76 ~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e 155 (270)
T PF07942_consen 76 KLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE 155 (270)
T ss_pred hccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999976 4567789999999999
Q ss_pred ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC
Q 016155 270 VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG 349 (394)
Q Consensus 270 ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G 349 (394)
+|..+...++||+||||||||||+||++||++|+++|||||+|||+|||+|||++.. .+++.++|||+|||+++++++|
T Consensus 156 ~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~-~~~~~sveLs~eEi~~l~~~~G 234 (270)
T PF07942_consen 156 VYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS-IPNEMSVELSLEEIKELIEKLG 234 (270)
T ss_pred ecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-CCCCcccCCCHHHHHHHHHHCC
Confidence 998544568999999999999999999999999999999999999999999999741 2345689999999999999999
Q ss_pred CEEEEEee-ccccCCCCcccccccccceEEEEEEEc
Q 016155 350 FEFEKEKT-IETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 350 F~ii~e~~-i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
|++++++. +.++|++|++||+|+.|+|.||||||+
T Consensus 235 F~~~~~~~~i~~~Y~~d~~Sm~q~~Y~~~~fvark~ 270 (270)
T PF07942_consen 235 FEIEKEESSILSGYTTDPESMMQTYYGCVFFVARKP 270 (270)
T ss_pred CEEEEEEEeeecCCCCCHHHHhhCccccEEEEEEcC
Confidence 99999875 999999999999999999999999996
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-82 Score=611.65 Aligned_cols=295 Identities=57% Similarity=0.965 Sum_probs=271.3
Q ss_pred cccchHHHhhhhcccccccCCCCCCCCCCCCCC-cCCCCCCcchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhh
Q 016155 85 LENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 163 (394)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~ 163 (394)
|+-|..++..++.... +.-.+|..-+ .+.++.+.+|.||.++|+|++||||+||+.||+++|.||+++|..+
T Consensus 69 I~~N~~v~r~Ia~~~~-------~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~l 141 (369)
T KOG2798|consen 69 IEENSRVIRAIAEECP-------FEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSL 141 (369)
T ss_pred HHhhhHHHHHHHhhCc-------cccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhh
Confidence 7778888888777221 2333455555 6777888999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 164 FPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 164 ~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
||... .+.+.+||+||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++||+|
T Consensus 142 fp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlr 221 (369)
T KOG2798|consen 142 FPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLR 221 (369)
T ss_pred CCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccc
Confidence 99654 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 243 PVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 243 ~v~iPDv~p~-~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
+++|||+.|. ..+..+.|+|++|||+++|+.+...+.||+||||||||||+|+++||++|+++|||||+|||+|||+||
T Consensus 222 pi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH 301 (369)
T KOG2798|consen 222 PISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH 301 (369)
T ss_pred cccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence 9999999997 556677899999999999986666678999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 386 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~ 386 (394)
|+++.|..+++++|||.|||.++++..||++++++.|+++|+.||+||+++.|.|.|||+||+..
T Consensus 302 F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~~ 366 (369)
T KOG2798|consen 302 FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPCA 366 (369)
T ss_pred ccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEecccc
Confidence 99987767788999999999999999999999999999999999999999999999999999864
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=143.88 Aligned_cols=194 Identities=18% Similarity=0.118 Sum_probs=122.2
Q ss_pred CCCCcchHHHHHHHHHHhhcCcccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--
Q 016155 121 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-- 193 (394)
Q Consensus 121 ~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~----~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-- 193 (394)
+....|.-++...++.+...++.....-.+. ....+-..+.+.... .++.+|||+|||+|+++..|+++ |
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 4445777666666665555555433321111 011122222222221 25679999999999999999986 4
Q ss_pred CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC
Q 016155 194 FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 273 (394)
Q Consensus 194 f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~ 273 (394)
..|+|+|+|..||..++-..+.... ....++.++.+|+.++.
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~------------------------------------~~~~~i~~~~~d~~~lp-- 140 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAK------------------------------------SCYKNIEWIEGDATDLP-- 140 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhh------------------------------------ccCCCeEEEEcccccCC--
Confidence 3899999999999765411100000 00124788999988763
Q ss_pred CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cC-------cchhhhhc---------cCCCCC----
Q 016155 274 PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GP-------LLYHFADL---------YGQEDE---- 331 (394)
Q Consensus 274 ~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GP-------Llyh~~~~---------~g~~~~---- 331 (394)
..+++||+|++.|-+...+|...++++++++|||||+++-+ .+ .++.+... .+..+.
T Consensus 141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 35689999998887887788999999999999999999742 21 11111100 010000
Q ss_pred ---ccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 332 ---MSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 332 ---~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..-.++.+|+.++++++||+.++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124699999999999999988754
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=146.34 Aligned_cols=154 Identities=22% Similarity=0.255 Sum_probs=113.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+-+.+.+..... ++.+|||+|||||.+|..||+.. ..|+|+|+|..||..++--+ .
T Consensus 39 Wr~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~---~---------------- 96 (238)
T COG2226 39 WRRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL---K---------------- 96 (238)
T ss_pred HHHHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh---h----------------
Confidence 555555544322 67899999999999999999996 79999999999997766211 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
+.. ..+++|++||+.++ |+++++||+|...|=|....++..+|++++|+|||||+++
T Consensus 97 --------------~~~------~~~i~fv~~dAe~L---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 --------------KKG------VQNVEFVVGDAENL---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred --------------ccC------ccceEEEEechhhC---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 000 11289999999987 4678999999999989999999999999999999999998
Q ss_pred Ee--c-----Cc--chh---hhhc---cCC----CC--------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 314 NL--G-----PL--LYH---FADL---YGQ----ED--------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 314 N~--G-----PL--lyh---~~~~---~g~----~~--------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+ . ++ .|+ +... .|. .. -..-.++.+++.++++++||+.+.
T Consensus 154 vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 154 VLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 53 1 11 122 1100 010 01 012246999999999999999887
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=136.21 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=102.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+.+.|.++.+.. .+..+|||+|||.|.++..|++.|+.++|+|+|..|+.. .+.
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~-------------------- 62 (161)
T PF13489_consen 9 YADLLERLLPRL--KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNV-------------------- 62 (161)
T ss_dssp HHHHHHHHHTCT--TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTS--------------------
T ss_pred HHHHHHHHhccc--CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhh--------------------
Confidence 444444444321 267899999999999999999999999999999999843 000
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
. ....... +.. ...+.||+|+++..|...+|+..+|+.|+++|||||+++-.
T Consensus 63 ---------~--------------~~~~~~~--~~~---~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 63 ---------V--------------FDNFDAQ--DPP---FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---------E--------------EEEEECH--THH---CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---------h--------------hhhhhhh--hhh---ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 0 0111111 111 13589999999998888889999999999999999999975
Q ss_pred cCcchh-----hhhc-cCCC-CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 316 GPLLYH-----FADL-YGQE-DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 316 GPLlyh-----~~~~-~g~~-~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.|..+. +... .... ......++.++++.+++++||+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 115 DPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp EEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred EcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 554321 1100 0000 01234689999999999999999875
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-16 Score=142.06 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4579999999999999999999999999999999997666332110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.++.+..+|+.++.. .++||+|++.+.+. ...++..+++.++++|||||++|-+..+ ...+. ..
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~~ 143 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-PC 143 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-CC
Confidence 124566677765421 36799999775432 2346789999999999999997542211 11110 00
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.......++.+||.++++ ||+++.-
T Consensus 144 ~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 144 TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 111246789999999996 9999884
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-15 Score=146.71 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=106.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..++...+. .
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~--------------------------~-------- 176 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADM--------------------------D-------- 176 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------------------c--------
Confidence 456999999999999999999999999999999999776621100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--cc--hhhh---
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--LL--YHFA--- 323 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP--Ll--yh~~--- 323 (394)
....++.++.+|+.++. ...++||+|++...|....+...++++++++|||||.+|-.-+ -. |...
T Consensus 177 ----~~~~~i~~~~~dae~l~---~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 177 ----PVTSTIEYLCTTAEKLA---DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred ----CcccceeEEecCHHHhh---hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 00124788999987763 2357899999998888888889999999999999999984211 10 1000
Q ss_pred hc--cC-CCC-Cc--cccCCHHHHHHHHHhCCCEEEEEee
Q 016155 324 DL--YG-QED-EM--SIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 324 ~~--~g-~~~-~~--~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.. .. .++ .. .-.++.+|+.++++++||++++...
T Consensus 250 ~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 250 AEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred HHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 00 00 011 01 1247999999999999999998763
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=140.84 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=114.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
..+.+.+++.+..+. ++.+|||||||.||.+..||++|+.|+|+|+|..++..+. ... ...
T Consensus 22 p~~~L~~~~~~~~~~----~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~~-----~l~-------- 82 (218)
T PRK13255 22 VNPLLQKYWPALALP----AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AEN-----GLT-------- 82 (218)
T ss_pred CCHHHHHHHHhhCCC----CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HHc-----CCC--------
Confidence 445566666543221 4579999999999999999999999999999999885321 110 000
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDt-a~ni~~yl~~I~~~LKpG 309 (394)
.+..+..........++++.++|+.++.. ...+.||+|+-. +|... .+...+|++.|.++||||
T Consensus 83 ------------~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 83 ------------PQTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred ------------ccccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 00000000000112458999999998742 223689999944 23332 334678999999999999
Q ss_pred cEEEEecCcchhhh-hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc-ccccccccceEEEEEEE
Q 016155 310 GVWINLGPLLYHFA-DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP-RSMMQNRYFTAFWTMRK 383 (394)
Q Consensus 310 G~wIN~GPLlyh~~-~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~-~sm~~~~Y~~~f~va~K 383 (394)
|+++-+ .+.+. +..+++ ...++.+||++++.. +|+++..+.....+..+. .......+...+|..+|
T Consensus 149 G~~~l~---~~~~~~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
T PRK13255 149 CRGLLV---TLDYPQEELAGP---PFSVSDEEVEALYAG-CFEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLER 217 (218)
T ss_pred CeEEEE---EEEeCCccCCCC---CCCCCHHHHHHHhcC-CceEEEeeeccccccCchhhhcCcchhheEEEEEEe
Confidence 875421 11121 112333 357899999999953 488887553333332222 22233444455555544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=144.83 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..++-.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK---------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4579999999999999999999999999999999997666322110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCcch------
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 320 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~----GPLly------ 320 (394)
....++.++.+|+.++.. ...++||+|++...+....+...++++++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011247788899877632 23578999998876666667789999999999999999732 11111
Q ss_pred --hhhhc-cC----CCCCccccCCHHHHHHHHHhCCCEEEEEeecc--ccCCCCc
Q 016155 321 --HFADL-YG----QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNP 366 (394)
Q Consensus 321 --h~~~~-~g----~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~--~~Y~~d~ 366 (394)
++... .. ........++.+++.++++++||+++....+. ..|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~ 218 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNK 218 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcc
Confidence 11100 00 00001235799999999999999999866443 4565553
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=144.16 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=101.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+.+.+. +. ..+.+|||||||.|..+..||.+||+|+|+|+|...+..+. .... +.|=
T Consensus 24 p~L~~~~~~l-~~---~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~-------~~~~------ 84 (218)
T PF05724_consen 24 PALVEYLDSL-AL---KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENN-------LEPT------ 84 (218)
T ss_dssp HHHHHHHHHH-TT---STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCT-------TEEE------
T ss_pred HHHHHHHHhc-CC---CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhc-------cCCC------
Confidence 4455555552 21 15669999999999999999999999999999998875431 1000 0000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccC-ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlD-ta~ni~~yl~~I~~~LKpGG~ 311 (394)
+..+.........+++++.|||+++.. ...++||+|.-+ ||+- ...-..+|.+.+.++|||||.
T Consensus 85 ------------~~~~~~~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 85 ------------VTSVGGFKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp ------------CTTCTTEEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred ------------cccccceeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 000000000112459999999999754 234689999955 3333 234477999999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++-+. +.|..... .++ .+.++.+||++++. .+|+++...
T Consensus 151 ~lLi~-l~~~~~~~-~GP---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 151 GLLIT-LEYPQGEM-EGP---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp EEEEE-EES-CSCS-SSS---S----HHHHHHHHT-TTEEEEEEE
T ss_pred EEEEE-EEcCCcCC-CCc---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 54321 33432222 123 47789999999997 799998854
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=139.28 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||||||.||.+..||++|+.|+|+|+|..++..+. +.. ... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~~----~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AEN----GLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HHc----CCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999986431 100 000 000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh-hHHHHHHHHHHhccCCcEEEEecCcchhhhh-ccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH-NIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~-ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~-~~g 327 (394)
+.....++++.++||.++.. ...+.||+|+-+- |+...+ ....|++.|.++|||||+++-+ .|.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~---~~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI---TLDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE---EEEcCCCCCC
Confidence 00112358999999998642 1236799998653 333333 3567999999999999986532 111111 112
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++ ...++.+||++++.. +|+++...
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 367999999999964 67777644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-16 Score=147.11 Aligned_cols=144 Identities=24% Similarity=0.264 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..++.-+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 5779999999999999999986 3 58999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--c----Cc---
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G----PL--- 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--G----PL--- 318 (394)
...++.+++||+.++. +.+++||+|++.|-|...+|..+.+++++|+|||||+++.+ + |+
T Consensus 96 --------~~~~i~~v~~da~~lp---~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLP---FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp --------T--SEEEEE-BTTB-----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred --------CCCCeeEEEcCHHHhc---CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 0114889999998874 45799999999898888888999999999999999999842 1 11
Q ss_pred chhhhhc-----cC----CC-C-----Cccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 LYHFADL-----YG----QE-D-----EMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 lyh~~~~-----~g----~~-~-----~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|.+.-. .| +. . ..++ ..+.+|+.++++++||+.++-+
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp HHHH---------------------------------------------------
T ss_pred eeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111100 01 00 0 0122 2488999999999999987643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=137.19 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++..... . .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~---~-----------------------~~------ 77 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAR---E-----------------------NL------ 77 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHH---h-----------------------CC------
Confidence 456999999999999999999999999999999999765532210 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
++....+|+.... . .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 78 --------~v~~~~~d~~~~~---~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 78 --------PLRTDAYDINAAA---L-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred --------CceeEeccchhcc---c-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 0334555654321 1 35799999875332 2356789999999999999985431 1111111000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.....++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 112346799999999995 69998843
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-15 Score=146.25 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=100.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..|.. |+|+|.|..|+..++.+.+...
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-------------------------------- 169 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-------------------------------- 169 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--------------------------------
Confidence 5679999999999999999999974 9999999999864443211100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--------cchh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--------LLYH 321 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP--------Llyh 321 (394)
...++.+..+|+.++. . .+.||+|++.-.|....+...+|+.++++|||||.+|--.. .++.
T Consensus 170 ------~~~~i~~~~~d~e~lp---~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 170 ------NDQRAHLLPLGIEQLP---A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred ------CCCCeEEEeCCHHHCC---C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 0123678888887763 2 57899999876666666788999999999999999984210 0110
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.+..-+...+..|.+++..+++++||++++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0001000111223599999999999999998855
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=137.15 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHH
Q 016155 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 126 d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~M 205 (394)
|..+++......+..|..... ....+.+.|.+.++.. +..+|||+|||+|.++..|+.+|..|+|+|+|..|
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~ 76 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM 76 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence 345566555555555553222 2234666666666532 46789999999999999999999999999999999
Q ss_pred HHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE
Q 016155 206 MICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 285 (394)
Q Consensus 206 L~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT 285 (394)
+..++... ....++.+|+.++. ..+++||+|++
T Consensus 77 l~~a~~~~--------------------------------------------~~~~~~~~d~~~~~---~~~~~fD~V~s 109 (251)
T PRK10258 77 LAQARQKD--------------------------------------------AADHYLAGDIESLP---LATATFDLAWS 109 (251)
T ss_pred HHHHHhhC--------------------------------------------CCCCEEEcCcccCc---CCCCcEEEEEE
Confidence 86544110 00245778876642 34578999999
Q ss_pred ecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcc-hhhhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 286 CFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLL-YHFADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 286 ~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GPLl-yh~~~~---~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+.+....++...|.+++++|||||+++-. ++-. ..+... .+..+...-.++.+++..++...||+...
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 887777778889999999999999999853 3211 111110 11111112247899999999988887544
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=139.12 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 5679999999999999999998 7899999999999865430
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc-----chh--
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL-----lyh-- 321 (394)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-.-|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788877632 478999999987776677889999999999999999742111 110
Q ss_pred --------hhhccCCCC--CccccCCHHHHHHHHHhCCCEEEE
Q 016155 322 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 322 --------~~~~~g~~~--~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|.......+ ......+.+++.++++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=137.80 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+++.+.-+. ++.+|||||||.|+.+..||.+||.|+|+|+|...+..+. . +..+.|=+..
T Consensus 30 p~L~~~~~~l~~~----~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~--- 93 (226)
T PRK13256 30 EFLVKHFSKLNIN----DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH--- 93 (226)
T ss_pred HHHHHHHHhcCCC----CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec---
Confidence 4455666554321 4579999999999999999999999999999998875432 1 0111110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhh-HHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHN-IVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~n-i~~yl~~I~~~LKpGG~ 311 (394)
.+ ......+.++.+.+|||+++...+...+.||+|+-. +|+--.++ ..+|++.+.++|+|||.
T Consensus 94 -------~~--------~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 94 -------GN--------DYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred -------cc--------ccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 00 000011335899999999974211224689998855 34333333 66899999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
++-+ .+.+....+++ .+.++.+||++++.. +|++..
T Consensus 159 llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 159 ILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 9863 23333322334 367899999999965 455554
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=144.26 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999997665332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhh---hcc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFA---DLY 326 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~---~~~ 326 (394)
....++.+..+|+.++. +.+++||+|++..-+...++..+++++++++|||||+++-.....-... ...
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01124788999988753 3468999999987777777888999999999999999985321100000 000
Q ss_pred -----------CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 327 -----------GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 327 -----------g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...-...-..+.+++.++++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 000000012489999999999999998854
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=128.98 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=101.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-.+... .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~-- 94 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----------------------------G-- 94 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----------------------------C--
Confidence 5679999999999999999976 358999999999997655322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchhhhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYHFAD 324 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PLlyh~~~ 324 (394)
..++.++.+|+.++. ...++||+|++.+.+...++..+.++++.++|||||++|-.. |-...+..
T Consensus 95 ---------~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 162 (231)
T TIGR02752 95 ---------LHNVELVHGNAMELP---FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ 162 (231)
T ss_pred ---------CCceEEEEechhcCC---CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHH
Confidence 013678889987752 235789999998888877888899999999999999998432 11100000
Q ss_pred ---------------ccCCC--------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 ---------------LYGQE--------DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ---------------~~g~~--------~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+.. +...-.++.+|++++++++||++++.+
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 163 LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 00000 000113588999999999999988755
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=120.91 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=78.1
Q ss_pred CCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|+++.+|++ .|..|+|+|+|..|+..++-....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------------------------- 47 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---------------------------------- 47 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH----------------------------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh----------------------------------
Confidence 56999999999999999999 899999999999999776633210
Q ss_pred CCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEec-ccC---ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCF-FID---TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf-~ely~~~~~~~~fD~VvT~f-FlD---ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|+ .+.. ..+.||+|+... .++ ..++..++++.+++.|||||++|-
T Consensus 48 ----~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 48 ----EGLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ----TTTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 01124589999999 3322 246799999887 222 125678899999999999999983
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=142.28 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998644332211000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-----cCc---chh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPL---LYH 321 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-----GPL---lyh 321 (394)
..++.+..+++.++.. .+.||+|++...|....++.++|++++++|||||.+|-- |+. +..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0124556667666532 258999999876666678889999999999999999842 211 000
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. +.+..-.....-.|.++|+.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000011234599999999999999999744
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=138.36 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=94.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-.... . .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~---~-----------------------~-------- 166 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK---E-----------------------N-------- 166 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---c-----------------------C--------
Confidence 45899999999999999999999999999999999765522210 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
-++.+..+|+.+.. ..++||+|++.+++. ..+++..+++.++++|||||+++-+.+..- +....+
T Consensus 167 ------l~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~---~~~~~~ 233 (287)
T PRK12335 167 ------LNIRTGLYDINSAS----IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT---EDYPCP 233 (287)
T ss_pred ------CceEEEEechhccc----ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCCCC
Confidence 02456667765532 147899999775332 235688999999999999999664322210 111111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+.....++.+||++++. +|++++-
T Consensus 234 ~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 234 MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 11245689999999994 5999883
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=115.76 Aligned_cols=93 Identities=27% Similarity=0.355 Sum_probs=73.6
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCC
Q 016155 176 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 254 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~ 254 (394)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8999999999999966552211
Q ss_pred CCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 255 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 255 ~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.++..+|+.++ |+.+++||+|++...+...++...++++|+|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhC---ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 11245788898886 3457999999988766555889999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=130.76 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999996554110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcch---h---h
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 322 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLly---h---~ 322 (394)
.++.+..+|+.++.. .++||+|++.+.++...+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 124667788876532 36899999998777777888999999999999999986333211 0 0
Q ss_pred ---------hhccCCCC-CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 323 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 323 ---------~~~~g~~~-~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...+.... ......+.+++.+++.+.||.+....
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 01234688899999999999875533
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-14 Score=132.74 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+.+|||+|||-|-|+.-||++|+.|||+|+|..|+..|+ .++.+. .+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak---~ha~e~-----------------------gv----- 106 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK---LHALES-----------------------GV----- 106 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH---Hhhhhc-----------------------cc-----
Confidence 37889999999999999999999999999999999997766 111110 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE----ecCcchhhh--
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN----LGPLLYHFA-- 323 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN----~GPLlyh~~-- 323 (394)
++.+.++...++-. ..++||+|+++-.|...+|+..+++.+.++|||||+.+- -.+.-|-..
T Consensus 107 ---------~i~y~~~~~edl~~---~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~ 174 (243)
T COG2227 107 ---------NIDYRQATVEDLAS---AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAII 174 (243)
T ss_pred ---------cccchhhhHHHHHh---cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHH
Confidence 13455555556543 248999999999999999999999999999999999973 222212111
Q ss_pred -------hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec-cccCCCCcccccccccceEEEEEEEc
Q 016155 324 -------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 324 -------~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i-~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
..+.+.-...-.+-.+|+...+...||++...... ..++ .+... ....+...|+++.++
T Consensus 175 ~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~-~~~~~-l~~~~~vNy~~~~~~ 241 (243)
T COG2227 175 GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPL-TNSWK-LSNDVSVNYMVHAQR 241 (243)
T ss_pred HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccc-cceEE-ecCCccceEEEEeec
Confidence 00111111123468899999999999998875522 1111 11111 233667777766554
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=128.09 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.++||+|||.||.|..||++||.|+|+|.|...|...+.+.+. . .+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l------ 77 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GL------ 77 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cc------
Confidence 567999999999999999999999999999999998654433211 1 11
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
.++....|+.+... .+.||+|++. .||+. +.+...++.|...|||||+.+-.... . .++++
T Consensus 78 --------~i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~~--~-~~d~p 141 (192)
T PF03848_consen 78 --------DIRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTFM--E-TPDYP 141 (192)
T ss_dssp --------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEEB-----SSS-
T ss_pred --------eeEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEec--c-cCCCC
Confidence 15667778766432 3689999863 46774 46788999999999999997742111 0 11111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+....+.+...||+... .||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y--~dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYY--ADWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHT--TTSEEEE
T ss_pred CCCCCCcccCHHHHHHHh--CCCeEEE
Confidence 122235567889999998 4899988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=131.04 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=98.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||.. |..|+|+|+|..|+..++-...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 5679999999999999999875 7899999999999976552110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC-ChhhHHHHHHHHHHhccCCcEEEEecCcchh---hhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD-ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh---~~~ 324 (394)
...++.+..+|+.+.. ...++||+|++.. ++. ...+...+|++++++|||||+++-..+..-. +..
T Consensus 97 ------~~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred ------cCCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 0123678889987642 3468999999853 223 2247889999999999999999964332100 000
Q ss_pred ccC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g--~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00000113589999999999999998754
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=126.34 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|.++..|+++ +..++|+|+|..|+..++..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999997766332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLL----- 319 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLl----- 319 (394)
....++.++.+|+.++.. ..+|+|++.+.+.. ..+...++++++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236889999987632 35898887764432 2457799999999999999999754321
Q ss_pred -----hh----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 320 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 320 -----yh----~~~~~g~~~-----------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.. |....|..+ .....+|.+|++++++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 110001100 012357999999999999998654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=125.55 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=101.5
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999986655222100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 331 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~ 331 (394)
....++++..+|+.+.. . .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~~---~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDP---F-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccCC---C-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 01124678888875531 1 3689999988766666778899999999999999999654421001110 00111
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 332 MSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 332 ~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
....++.+++.+++.+.||++++...+
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 134578999999999999999986543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=127.21 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=96.9
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~----~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|.++..|++ .+..|+|+|+|..|+..++-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 457899999999999998887 3679999999999997766332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEec-------
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLG------- 316 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wIN~G------- 316 (394)
....+++++.+|+.++.. +.+|+|++.+ |++. .....++++|+++|||||.++...
T Consensus 106 --------~~~~~v~~~~~d~~~~~~-----~~~D~vv~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI-----ENASMVVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC-----CCCCEEehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 011247889999887532 3589988765 4542 346789999999999999999642
Q ss_pred ---Ccchh----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 317 ---PLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 317 ---PLlyh----~~~~~g~~~-----------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
++++. +....|-.. .....+|.++..++|+++||+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 22211 110111110 112346999999999999998653
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=129.68 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-...... .. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~--------------------------~~--~-- 193 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEAL--------------------------AA--L-- 193 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcc--------------------------cc--c--
Confidence 46799999999999999999999999999999999976663221000 00 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhh--hc-
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFA--DL- 325 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~--~~- 325 (394)
....++.|..+|+.++ .++||+|++...+... ..+...++.+.+ |++||++|.+.|-.+.+. ..
T Consensus 194 ----~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 194 ----PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred ----ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 0012367788886543 3789999877543222 224456666664 578999998877544322 11
Q ss_pred ---cCCCC--CccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 326 ---YGQED--EMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 326 ---~g~~~--~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
+.++. ...+..+.+|++++++++||+++..+.+.
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence 11111 11234589999999999999998866433
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=131.84 Aligned_cols=141 Identities=19% Similarity=0.074 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|||+|||+|.++..+++. +..|+|+|+|..|+..++-...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------------------------------- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------------------------- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------------------------------
Confidence 4579999999999999999875 5789999999999865541100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh--hhcc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 326 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~--~~~~ 326 (394)
..++.++.+|+.++. ...++||+|+++..+...++....|++++++|||||+++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCC---CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 012567888987753 345789999998777767777889999999999999998666542111 0000
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 327 GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 327 g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
. +......+.+|+.++++++||+.++.+.+
T Consensus 228 ~--~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 228 A--DVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred h--hhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 0 00011358999999999999999886643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=126.50 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=99.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+-+.+.- +++.+|||+|||-|.++..+|++ |..|+|+.+|......++-.. .+.
T Consensus 50 k~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~---~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERI---REA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHH---HCS---------------
T ss_pred HHHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHH---Hhc---------------
Confidence 44555544432 37889999999999999999999 999999999999986554221 111
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~w 312 (394)
...+.+.+..+|+.++. .+||.||+.--+.+. +|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889988853 489999999655554 78999999999999999999
Q ss_pred EE--ec-C-cchhhhhccC-------CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 313 IN--LG-P-LLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 313 IN--~G-P-Llyh~~~~~g-------~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+. +. + -.++.+.... .-| .+.-.+.+++...+++.||+++.......-|
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~~~hY 222 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENLGRHY 222 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-HHHH
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEcCcCH
Confidence 73 21 1 1122110000 001 1234589999999999999999876544333
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=119.48 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..++++|... ..+..+|||+|||+|.++..|+..+..|+|+|+|..|+..++-.+...
T Consensus 43 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 100 (219)
T TIGR02021 43 RKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----------------- 100 (219)
T ss_pred HHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 3466666531 125679999999999999999999999999999999997765222100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~ 311 (394)
....++.+..+|+.++ .++||+|++.+.+. ...++...++.+.+++|+|++
T Consensus 101 ---------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 101 ---------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred ---------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0012367888887664 16899999875432 345678899999999997766
Q ss_pred EEEecCcchhh------hhccCC--CCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 312 WINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 312 wIN~GPLlyh~------~~~~g~--~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+. +.|-.+.+ ...... .......++.+|++++++++||+++..+....+|
T Consensus 154 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 154 FT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 65 43321111 010111 1111335799999999999999999877544443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-13 Score=117.36 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=82.8
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..|+. . +..++|+|+|..|+..++..+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 578999999999999999994 4 679999999999997776433210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.. .++.+.++|+.++... .. +.||+|++...+....+....++.+.++|||||++|-.
T Consensus 52 -------~~-~ni~~~~~d~~~l~~~-~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 52 -------GL-DNIEFIQGDIEDLPQE-LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp -------TS-TTEEEEESBTTCGCGC-SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------cc-cccceEEeehhccccc-cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 01 1489999999995421 12 79999999987788888889999999999999999853
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=124.70 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=100.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..+++. |. .|+|+|+|..|+..++...... .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g---- 126 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G---- 126 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5779999999999998888765 54 6999999999997766322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC-----cchhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 322 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP-----Llyh~ 322 (394)
..++.+..+|+.++. ..++.||+|++...+...++...++++++++|||||+++-.+. +....
T Consensus 127 ---------~~~v~~~~~d~~~l~---~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 127 ---------YTNVEFRLGEIEALP---VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ---------CCCEEEEEcchhhCC---CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 013678889987753 2357899999888777777888999999999999999986432 11000
Q ss_pred hh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~---~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.. ..++. ..-.++.+++.+++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012468899999999999998764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=131.88 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=99.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++.-. .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~---~-------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA---I-------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh---h--------------------------------
Confidence 5679999999999999999986 789999999999997654110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 323 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl------yh~~ 323 (394)
....++.+..+|+.+.. ...++||+|++..-+...++...+++.++++|||||+++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~---~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKT---YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCC---CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 00123678889987642 235789999987666666678899999999999999998532210 0000
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 324 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 324 ~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.... .. .....+.+++.++++++||+++..
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeee
Confidence 0000 00 012458999999999999999864
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=123.28 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
++..+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..++- +
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-------~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-------A--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-------c---------------
Confidence 5555655433 3569999999999999999999 6899999999999965430 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.+|+.++ |+.+++||+|++.|.|...+|+...+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~l---p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEAL---PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhC---CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 01245777765 34578999999999888888899999999999999655554
Q ss_pred ec
Q 016155 315 LG 316 (394)
Q Consensus 315 ~G 316 (394)
++
T Consensus 146 ~~ 147 (226)
T PRK05785 146 MG 147 (226)
T ss_pred eC
Confidence 43
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=113.97 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++.++ ..++|+|+|..|+..++-.+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~---------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD---L---------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc---c----------------------------
Confidence 45799999999999999999987 7899999999998655421110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchh---
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 321 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PLlyh--- 321 (394)
....++.+..+|+.++. ...+.||+|+..+.+....++...++.+.++|||||++|.+. |....
T Consensus 100 -------~~~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 00123678888987753 235789999988878777788999999999999999998532 11100
Q ss_pred ----hh--------hccCCCCC--------ccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 ----FA--------DLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ----~~--------~~~g~~~~--------~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+. ...+.... .....+.+++.++++++||++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeee
Confidence 00 00000000 0113588999999999999998765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=115.23 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=106.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
-++.+....+.. ++.+||++|||+|.++..+++.|..++|+|+|..|+..++......
T Consensus 36 ~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------- 93 (233)
T PRK05134 36 RLNYIREHAGGL---FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------- 93 (233)
T ss_pred HHHHHHHhccCC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc-------------------
Confidence 345666555322 5678999999999999999999999999999999986554211100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
...+.+..+|+.++.. ...+.||+|+..+.+....+....++.+.++|+|||+++-.
T Consensus 94 ---------------------~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 94 ---------------------GLKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ---------------------CCceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 0014556667665431 12478999998887777778889999999999999998843
Q ss_pred cCc--chhhh-------hcc----CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 316 GPL--LYHFA-------DLY----GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 316 GPL--lyh~~-------~~~----g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+- ...+. ... .........++.+++.+++++.||+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 151 TLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 221 00000 000 000111224689999999999999999754
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=113.49 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+... .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--------------------------~------- 91 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKD--------------------------P------- 91 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 4679999999999999999999999999999999986655211100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh---
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 323 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL----lyh~~--- 323 (394)
..++.+..+|+.++.. ...+.||+|++...+....+...+++.+.++|+|||+++-..+. .+...
T Consensus 92 ------~~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 92 ------LLKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred ------CCceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 0025677788776532 12478999998877777778889999999999999998743221 01000
Q ss_pred h--ccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 324 D--LYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 324 ~--~~g~----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. ..+. .......++.+++.+++++.||++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0 0000 0001124588999999999999998865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-12 Score=123.19 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=87.6
Q ss_pred HHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 016155 129 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 203 (394)
Q Consensus 129 kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~ 203 (394)
+=.....++++ +|-. -+.|.+ .+....+.+.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 44455677776 4442 333432 23334444444443 4568999999999999999888 68999999999
Q ss_pred HHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC-CCccE
Q 016155 204 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 282 (394)
Q Consensus 204 ~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~-~~fD~ 282 (394)
.||..+.--+.. .+|. .++..+.|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~~-----------------------------~~p~---------~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALAA-----------------------------DYPQ---------LEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHHh-----------------------------hCCC---------ceEEEEEEcccchhhhhcccccCCeE
Confidence 999665421110 0111 12677899998743211111 11233
Q ss_pred EEE---ecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 283 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 283 VvT---~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
++. .+..-..++...+|+.|+++|||||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 332 2333345667899999999999999998
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=111.54 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..+++.+. .++|+|.|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999854431110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC---cc----h
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 320 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP---Ll----y 320 (394)
...++.+..+|+.++. ...+.||+|++.+.+....++..+++.+.++|||||+++-++. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 0113677888887753 2357899999888787777888999999999999999985332 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------cccCCHHHHHHHHHhCCCEEEEEe
Q 016155 321 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 321 ----h~~~~---~g~---~~~~---------~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..... .+. .... .-.++.++++.+++++||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=117.46 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=95.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------------------------------- 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------------------------------- 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----------------------------------
Confidence 457899999999999999999985 4699999999985443100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|+.+.. ...++||+|++.+.+....+...+++.+.++|||||+++-..|..-.+......
T Consensus 79 --------~~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 79 --------SENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred --------CCCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 012567888887653 235789999998877777778899999999999999999644332111110000
Q ss_pred -CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 -EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 -~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.....-..+.+++.+++.+. |+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235778888888876 77654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=109.34 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..++.+|..|+|+|+|..|+..++..+.. +
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~------------------------------ 64 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N------------------------------ 64 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 456899999999999999999999999999999999766532210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-cc--CC------------------hhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DT------------------AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-Fl--Dt------------------a~ni~~yl~~I~~~LKpG 309 (394)
..++.+..+|+.+.. .++||+|++.- |+ +. ..-+.++++.+.++||||
T Consensus 65 ------~~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 65 ------NVGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred ------CCceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 012566778876642 25899999772 22 11 111567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.++-+.+ ..-...++..++++.||..+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99884211 11246888999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=111.20 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++.+. -.++|+|+|..|+..++-...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--------------------------------- 65 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--------------------------------- 65 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---------------------------------
Confidence 56799999999999999999874 589999999999876552100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 323 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL----lyh~~ 323 (394)
....++.+..+|+.++. ...++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 66 -------~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 66 -------GLGPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred -------CCCCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 00123677888876542 23578999999888888788899999999999999999864431 11100
Q ss_pred hc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 324 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 324 ~~---------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+. .... ..-..+..++.++++++||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999998764
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=111.04 Aligned_cols=122 Identities=12% Similarity=0.145 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||..+ ..|+|+|.|..|+..++...+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-------------------------------- 89 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-------------------------------- 89 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--------------------------------
Confidence 36799999999999999998775 57999999999997655322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.. .++.++.+|+.++. ..++||+|++.. ..++.++++.++++|||||+++-. +.
T Consensus 90 ------~~-~~i~~i~~d~~~~~----~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~-----~~------ 143 (181)
T TIGR00138 90 ------GL-NNVEIVNGRAEDFQ----HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAY-----KG------ 143 (181)
T ss_pred ------CC-CCeEEEecchhhcc----ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE-----cC------
Confidence 00 13788999988752 247899998765 245678899999999999999842 11
Q ss_pred CCCccccCCHHHHHHHHHh---CCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALH---YGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~---~GF~ii~e~ 356 (394)
.-...++..+.++ .||+.++..
T Consensus 144 ------~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 144 ------KKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred ------CCcHHHHHHHHHhhhhcCceEeecc
Confidence 1134455555444 899998865
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=110.27 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=95.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
+..+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999997665322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-C-ChhhHHHHHHHHHHhccCCcEEEEecCc---chhhhhc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 325 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl-D-ta~ni~~yl~~I~~~LKpGG~wIN~GPL---lyh~~~~ 325 (394)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.++++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236788888432 24789999987544 2 34567788888888775 4555554332 1111100
Q ss_pred ---c-CC-CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 326 ---Y-GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 326 ---~-g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
. +. .......++.+++.+++++.||++.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 00 11123457999999999999999988653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=106.82 Aligned_cols=123 Identities=14% Similarity=-0.020 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-..... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----------------------------~--- 79 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----------------------------G--- 79 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------C---
Confidence 46699999999999999999875 58999999999986654211100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|..... .+.||+|+..... .++.++++.++++|||||+++-..+
T Consensus 80 --------~~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 80 --------CGNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred --------CCCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 012566777754211 3579999875433 3466789999999999999974111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..-+.+++.+++++.||+.++..
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceEE
Confidence 11256788999999999876643
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=123.45 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~------ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------G------ 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------c------
Confidence 5679999999999999999986 8899999999999976552110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCc-chhhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPL-LYHFAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN--~GPL-lyh~~~ 324 (394)
.++++..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.- .+...+
T Consensus 213 --------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 213 --------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred --------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 0145667777654 268999998765543 35678999999999999999985 2211 110000
Q ss_pred ccC---CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 325 LYG---QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 325 ~~g---~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+- .-| ...-.+.+++..+++ .||++.....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 000 001 123458899998876 4899887543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=107.18 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..+|+ .+..|+|+|.|..|+..++......
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-------------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-------------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--------------------------------
Confidence 367999999999999999986 3679999999999997766322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.. .++++..+|+.++.. .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~~----~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFGQ----EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCCC----CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 127888999877532 578999997653 4577899999999999999985311
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-...++.++.+..|+.+.+.-
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeeeE
Confidence 1234567788888899988744
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=121.36 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
+.+.|.+.++. ...+|||+|||+|.++..|++. +..++|+|+|..|+..|+..
T Consensus 74 i~~~l~~~l~~----~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~------------------ 131 (272)
T PRK11088 74 VANLLAERLDE----KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR------------------ 131 (272)
T ss_pred HHHHHHHhcCC----CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh------------------
Confidence 33445555442 4568999999999999999875 24789999999999654310
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
. .++.+..+|..++ |+.+++||+|++.|. . ..+++++++|||||
T Consensus 132 ---------------~-----------~~~~~~~~d~~~l---p~~~~sfD~I~~~~~---~----~~~~e~~rvLkpgG 175 (272)
T PRK11088 132 ---------------Y-----------PQVTFCVASSHRL---PFADQSLDAIIRIYA---P----CKAEELARVVKPGG 175 (272)
T ss_pred ---------------C-----------CCCeEEEeecccC---CCcCCceeEEEEecC---C----CCHHHHHhhccCCC
Confidence 0 1256788887765 345689999998663 1 23678999999999
Q ss_pred EEEEecCcchh
Q 016155 311 VWINLGPLLYH 321 (394)
Q Consensus 311 ~wIN~GPLlyh 321 (394)
++|.+.|.-.|
T Consensus 176 ~li~~~p~~~~ 186 (272)
T PRK11088 176 IVITVTPGPRH 186 (272)
T ss_pred EEEEEeCCCcc
Confidence 99987665433
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-13 Score=109.45 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=56.3
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 176 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+.. .....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~-------------------------~~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE-------------------------LGNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH-------------------------CT-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-------------------------cCCcc--------
Confidence 79999999999999999 88999999999998322211100 00000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
...+.+...|..+.. ..++||+|++...+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222222322211 1269999999988888889999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-11 Score=113.01 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccc
Q 016155 171 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~----~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v 244 (394)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..++-.. .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~--------------------------- 109 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---R--------------------------- 109 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---c---------------------------
Confidence 567999999999999999885 35 48999999999997655110 0
Q ss_pred ccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCcc
Q 016155 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 319 (394)
Q Consensus 245 ~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN-~--GPLl 319 (394)
..++.+..++..++. ..+++||+|++.+.+...++ +...++++++++| |+++|+ + +++.
T Consensus 110 ------------~~~~~~~~~~~~~l~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 110 ------------RPGVTFRQAVSDELV---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred ------------cCCCeEEEEeccccc---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 001233344433332 13578999999987665544 5689999999999 777776 2 2222
Q ss_pred hhhhh---c--c-C----CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 320 YHFAD---L--Y-G----QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 320 yh~~~---~--~-g----~~~~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.... . . + .+...++ .++.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 21000 0 0 0 0111122 5799999999999 99988754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=125.17 Aligned_cols=141 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998543210 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
...++.++.+|+.+.. .+...++||+|++.+.+... +.+.+.++.++++|||||+++-.... +....+...
T Consensus 81 -----~~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 0123678888886422 12346789999987654433 33779999999999999999853222 111111000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
....+...+..++.+++.+.||....
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113445788999999999998875
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=116.19 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.|.++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +.
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~------------- 206 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ------------- 206 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 4455555432 457999999999999999999987 799999999999776632210 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....+.+..++.... ..++||+|+++.. +..+.+++..+.++|||||++|.
T Consensus 207 ---------------------~~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 207 ---------------------VSDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ---------------------CCcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 001133444442221 2468999998765 34467899999999999999997
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|.+. -..+++++.+++. |++++..
T Consensus 258 sgi~~----------------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 258 SGILE----------------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred EeCcH----------------hHHHHHHHHHHcc-CceeeEe
Confidence 55431 2457888888775 9887643
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=107.52 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=96.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
++++.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++ +
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-------~----------------- 54 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-------A----------------- 54 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-------H-----------------
Confidence 344555554 4568999999999999999765 568899999999985432 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE-E
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI-N 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI-N 314 (394)
.++.++.+|+.+... +...++||+|++...+...+|+...++++.+++|++.+-+ |
T Consensus 55 ----------------------~~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 55 ----------------------RGVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred ----------------------cCCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 013456677654211 1235789999998877777888899999999888643222 1
Q ss_pred ecCcc--hhhh-h--c--cCC------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLL--YHFA-D--L--YGQ------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLl--yh~~-~--~--~g~------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++... +.+. . . .+. .....-..+.+++.+++++.||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 112 FGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred hhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 21100 0000 0 0 000 0001124699999999999999999865
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=117.88 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||.|||+|-|+.-||+.|..|+|+|.|..|+.+|+-- .+.. ++. .
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h--~~~d------------------------P~~----~- 138 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH--KKMD------------------------PVL----E- 138 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh--hhcC------------------------chh----c-
Confidence 46799999999999999999999999999999999888721 1000 000 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----EecCcchh-----h
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLGPLLYH-----F 322 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI----N~GPLlyh-----~ 322 (394)
....-.+++...|..++ .+.||+||+.-.+....++.++++...++|||||.+. |-+-+-|+ .
T Consensus 139 --~~~~y~l~~~~~~~E~~------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~ 210 (282)
T KOG1270|consen 139 --GAIAYRLEYEDTDVEGL------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA 210 (282)
T ss_pred --cccceeeehhhcchhhc------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence 00111355666664443 3569999999888888899999999999999999886 32212221 1
Q ss_pred hhccCCCCC----ccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 ADLYGQEDE----MSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~~~g~~~~----~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+.....-|. -.-.++++|+.+++...|+.+...
T Consensus 211 E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 211 EIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred HHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 111111110 123579999999999999987763
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-11 Score=113.13 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=89.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..++-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555555432 5679999999999999999999986 99999999999766522110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+ ...+.+..+ +.+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~------------~~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GV------------ELNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CC------------CceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 000111111 127999987643 33466889999999999999996
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|.+ .-..+++.+.+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1246789999999999998744
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=115.31 Aligned_cols=145 Identities=20% Similarity=0.248 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
++.+|||+|||||-+|+-|.+. +-.|++.|+|.+||..+.. ++.+ |
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 5689999999999999999766 2579999999999976551 1110 1
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-------
Q 016155 243 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------- 315 (394)
Q Consensus 243 ~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~------- 315 (394)
+++ ......++.||..++. +.+++||+.+..|=|....++.+.+++.||+|||||+|.-+
T Consensus 154 ~l~----------~~~~~~w~~~dAE~Lp---Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDLP---FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccCC---CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 1123789999998874 56899999988898998889999999999999999999731
Q ss_pred cCcchhhhhc-------c-----CCCCC-----ccc--cCCHHHHHHHHHhCCCEEEE
Q 016155 316 GPLLYHFADL-------Y-----GQEDE-----MSI--ELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 316 GPLlyh~~~~-------~-----g~~~~-----~~i--eLS~eEl~~ll~~~GF~ii~ 354 (394)
.|+.|-+..- . |.... -+| .++.||+..+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2443322110 0 10000 012 35899999999999998875
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=102.19 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=68.7
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 175 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~G-----f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
|||+|||+|+.+..|++.. -.++|+|+|..||..++..... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~------------------------------ 47 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D------------------------------ 47 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T------------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c------------------------------
Confidence 7999999999999999884 7999999999999655521100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG 310 (394)
+-++.++++|+.++.. ..++||+|++.+ ..-+.+.+..+++.+.++|||||
T Consensus 48 -------~~~~~~~~~D~~~l~~---~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 -------GPKVRFVQADARDLPF---SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------TTTSEEEESCTTCHHH---HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------CCceEEEECCHhHCcc---cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 0126789999988642 357999999842 23445568899999999999998
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=115.93 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+.+.+.-+ ++.+|||+|||-|.++..+|++ |-.|+|+++|..|+..++-.+ .+
T Consensus 60 k~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~---------------- 117 (283)
T COG2230 60 KLDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AA---------------- 117 (283)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HH----------------
Confidence 556666655433 7899999999999999999999 899999999999986555211 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~w 312 (394)
.....++++...|..++. +.||.||+.=-++ ..+|..+||+.++++|+|||++
T Consensus 118 -------------------~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 118 -------------------RGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred -------------------cCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 011234677788877753 4599999984333 3367899999999999999999
Q ss_pred EEe---cCcc-h-hhhh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 313 INL---GPLL-Y-HFAD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 313 IN~---GPLl-y-h~~~---~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
++. +|-. + .+.+ .+ .-| ...-.|..++.+...+.||.+.......
T Consensus 173 llh~I~~~~~~~~~~~~~i~~y-iFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKY-IFP-GGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred EEEEecCCCcccccchHHHHHh-CCC-CCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 962 2210 1 1110 00 001 1234589999999999999999865433
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=105.97 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=97.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++.++|++ +-.|+|+|.|..|+..++...+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 357999999999997665222110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
....++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||+++-.-+.
T Consensus 89 -------g~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------- 147 (198)
T PRK00377 89 -------GVLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAIL--------- 147 (198)
T ss_pred -------CCCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeec---------
Confidence 001236778888876432 12368999987542 245678999999999999999831110
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFW 379 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~-~i~~~Y~~d~~sm~~~~Y~~~f~ 379 (394)
.-+.+++..++++.||.....+ .+..++.......+... +++|.
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-npv~~ 192 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITEVIIAKGMKTKVGTAMMTR-NPIFI 192 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCcEeecC-CCEEE
Confidence 1145788889999999665544 34444433332233333 44443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=102.24 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+.+|..|+|+|+|..|+..++..+... .++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------------------~~~-------- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----------------------NIR-------- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----------------------CCC--------
Confidence 5668999999999999999999999999999999997665322110 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------------------ChhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------------------TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD--------------------ta~ni~~yl~~I~~~LKpG 309 (394)
..++.++.+|+.+... .++||+|++.. |+. ....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0114567777766332 34799998652 211 1233567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.++-+-+ -....+++.+++.+.||+++...
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98874211 01245789999999999887643
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.6e-11 Score=108.59 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=103.6
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHhhhhhccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 217 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~filn~~~ 217 (394)
|-.+..+|| |+++|.....-.. .....+|||+|||.|.+.+.||+.||. .+|+|+|...+..|.-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 666666777 7777776554110 113349999999999999999999996 5999999999977665543211
Q ss_pred cccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEE---Eecc--c--C
Q 016155 218 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV---TCFF--I--D 290 (394)
Q Consensus 218 ~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv---T~fF--l--D 290 (394)
. .+.++|-+.|+++- .+..++||+|. |.=- | |
T Consensus 116 ~--------------------------------------~n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F--------------------------------------SNEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C--------------------------------------CcceeEEEeeccCC---cccccceeEEeecCceeeeecCCC
Confidence 1 11256666665542 12346677665 2111 1 2
Q ss_pred Chh-hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 291 TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 291 ta~-ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-+. -+.-|+..+.++|+|||+|+-. +-..+.+||.+.++..||++...-
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEee
Confidence 221 1356999999999999999841 346799999999999999887643
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=95.17 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 3569999999999999999997 358999999999997665322110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.++.++.+|+.+... ...++||+|++..-. ....++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 124566677554211 123689999875432 2356899999999999999984
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-10 Score=106.67 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++-.+...
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------------- 82 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------------- 82 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 457999999999999999999987 8999999999997655221100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-------------------hhHHHHHHHHHHhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 308 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta-------------------~ni~~yl~~I~~~LKp 308 (394)
+.++.++.+|+.+.. ..++||+|++. |+-... ..+.++++.+.++|||
T Consensus 83 -------~~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 83 -------GVDVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred -------CCeeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 002566778887642 24789999986 332211 1245678899999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
||+++-+-+ . ....+++.+++++.||.+...
T Consensus 152 gG~l~~~~~-----~-----------~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLVQS-----E-----------LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEEEe-----c-----------ccCHHHHHHHHHHCCCCeEEE
Confidence 999983110 0 114567888888888876653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-10 Score=106.28 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=93.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++.+.+.++. .+.+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444432 3468999999999999999987 578999999999997665322110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------h--------------
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 292 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------a-------------- 292 (394)
. -.++.+..+|+.+.. ..++||+|+++. |+.. .
T Consensus 135 ---------~-------------~~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G-------------LDNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C-------------CCeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 013678889987743 247899999862 2210 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 293 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 293 -----~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEEE
Confidence 11235788999999999998731 10 1135789999999999877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=112.66 Aligned_cols=143 Identities=16% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|..++.++.+|.. |.|+|-+..-+.-.+++.+...... +
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~---------------------~------- 166 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP---------------------P------- 166 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc---------------------c-------
Confidence 6889999999999999999999985 9999999876654444432110000 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-----ecCcch--hh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-----LGPLLY--HF 322 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-----~GPLly--h~ 322 (394)
..++ .. -++..|. .+.||+|+++=.|=.-.+..+.|+.+...|||||.+|- -|+.-. --
T Consensus 167 ----------~~~l-pl--gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 167 ----------VFEL-PL--GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred ----------EEEc-Cc--chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc
Confidence 0111 00 1112233 57899999885555566788999999999999999993 122111 01
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++.+..-++..+-.|..-|+..++++||+.++.
T Consensus 233 ~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 233 EDRYAKMRNVWFIPSVAALKNWLERAGFKDVRC 265 (315)
T ss_pred CCcccCCCceEEeCCHHHHHHHHHHcCCceEEE
Confidence 111222233345569999999999999998873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=96.97 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=77.3
Q ss_pred CeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
.+|||||||+|+++..++++| ..++|+|++...+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 99999999999998777443211
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------hhHHHHHHHHHHhccCCcEEEEe
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
....++.++.+|+.++.. +...++||+|+++- |.... ....++++.+.++|||||.++-+
T Consensus 47 ---~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 011247899999988752 13468999999883 43321 12357899999999999999853
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=113.90 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||||||+|.++.+++..|..++|+|++..|+..++..++.. .+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~----------------------------g~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY----------------------------GI---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------CC----
Confidence 5678999999999999999999999999999999997665322110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFl----D--ta-~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
.++.+..+|+.++.. ..+.||+|++. |-. . .. ....++++.++++|||||+++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~~---~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLPL---SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCCc---ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 115678899887632 35789999986 321 1 11 2246889999999999999885322
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+..++.++++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244567899999 6653
|
This family is found exclusively in the Archaea. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=103.30 Aligned_cols=137 Identities=18% Similarity=0.082 Sum_probs=85.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~------------------------------ 118 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEE------------------------------ 118 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhh------------------------------
Confidence 66799999999999999999872 47999999999985322 11110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|..+......-.+.||+|+.. +.........++.++++|||||.++-. +.|+-.+ ...
T Consensus 119 --------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 119 --------RKNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred --------cCCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 012455677765421000112569999753 222222345689999999999999853 1221111 000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
. ..... ++..+.++++||++++...
T Consensus 186 ~---~~~~~-~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 186 D---PKEIF-KEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred C---HHHHH-HHHHHHHHHcCCeEEEEEc
Confidence 1 11223 3445889999999997653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=106.96 Aligned_cols=127 Identities=20% Similarity=0.117 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-------------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-------------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------------------------------
Confidence 4678999999999999999987 457999999999997655221100
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEeccc---CChh-----hHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 249 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf-~ely~~~~~~~~fD~VvT~fFl---Dta~-----ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
. ..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-.-+
T Consensus 88 ------~-~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 88 ------G-LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred ------C-CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 0 02377889998 44321 1235789999876421 1111 145789999999999999984211
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 353 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii 353 (394)
..--.+++.+.+++.||...
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccc
Confidence 11234567788888998665
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=106.81 Aligned_cols=140 Identities=12% Similarity=0.039 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++.+++++. ..++++|+ ..|+..++..+..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------- 194 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------------------------------- 194 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh---------------------------------
Confidence 56799999999999999999984 67999998 5788655421110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc-------
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLl------- 319 (394)
....++++++.|||.+... ..+|+|+...++. ..+.....|+++++.|||||+++....+.
T Consensus 195 -----~gl~~rv~~~~~d~~~~~~-----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 195 -----KGVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred -----CCccceEEEEecCccCCCC-----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 0112348899999976321 2369988766554 23345689999999999999998543211
Q ss_pred ----hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 320 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 320 ----yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
+++-...+......-..+.+|+.++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998775
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=110.03 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHhhhhhccccccccccccc----------cc
Q 016155 171 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IH 229 (394)
Q Consensus 171 ~~~~VLvpGCGlGR----La~eLA~~-------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf----------i~ 229 (394)
++.+||++|||+|. ||..|++. ++.|+|+|+|..||..|+-- +||- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG-----------IYPERELEDLPKALLA 167 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC-----------CCCHHHHhcCCHHHHh
Confidence 45799999999997 45555553 47899999999999776621 1210 00
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
.+-.. ... ...+.+ ....++.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|
T Consensus 168 ~yf~~--~~~---~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 168 RYFSR--VED---KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred hhEEe--CCC---eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 00000 000 001100 112358999999987532 357899999854 343 355778999999999
Q ss_pred cCCcEEE
Q 016155 307 KDGGVWI 313 (394)
Q Consensus 307 KpGG~wI 313 (394)
||||+++
T Consensus 233 ~pGG~L~ 239 (264)
T smart00138 233 KPGGYLF 239 (264)
T ss_pred CCCeEEE
Confidence 9999998
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-10 Score=108.62 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=93.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..++.+ +..|+|+|+|..|+..++..+ |
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------------------~- 109 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------------------P- 109 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------------------c-
Confidence 3568999999999999998876 579999999999986554110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh---hh---------------HHHHHHHHHHhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKD 308 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta---~n---------------i~~yl~~I~~~LKp 308 (394)
++.++.+|++++.. .++||+|++. |+.... .+ +.+.+.....+|||
T Consensus 110 ----------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 110 ----------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred ----------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence 14678899987642 3689999985 653211 22 24566777888999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+|..+-. |.- .+...-.|+.+|++++++..||....-=.+++.|
T Consensus 176 ~G~~~~~----yss------~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~ 219 (279)
T PHA03411 176 TGSAGFA----YSG------RPYYDGTMKSNKYLKWSKQTGLVTYAGCGIDTSI 219 (279)
T ss_pred CceEEEE----Eec------cccccccCCHHHHHHHHHhcCcEecCCCCcccce
Confidence 9966531 211 1111235899999999999999887644455443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=107.27 Aligned_cols=160 Identities=17% Similarity=0.097 Sum_probs=94.3
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~fil 213 (394)
-+|.|..- |. .+-..|..-+......++.+|||+|||+|.++..||+. | =.|+|+|+|..|+. -++
T Consensus 106 eyR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~---dLl 174 (293)
T PTZ00146 106 EYRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR---DLT 174 (293)
T ss_pred eeeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH---HHH
Confidence 38999864 22 23334433222222236779999999999999999987 2 37999999987651 111
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCC
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el--y~~~~~~~~fD~VvT~fFlDt 291 (394)
+.+.+ ..|+.++.+|+..- |.. ..+.||+|+.... .
T Consensus 175 ~~ak~--------------------------------------r~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~ 212 (293)
T PTZ00146 175 NMAKK--------------------------------------RPNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--Q 212 (293)
T ss_pred HHhhh--------------------------------------cCCCEEEECCccChhhhhc--ccCCCCEEEEeCC--C
Confidence 11110 01245566776532 221 1357999976543 1
Q ss_pred hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 292 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 292 a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~-~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..+...++.+++++|||||.+|- .+..... .+.++ ..-++ +|+ +.|++.||++++...
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~p--e~~f~-~ev-~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII----SIKANCIDSTAKP--EVVFA-SEV-QKLKKEGLKPKEQLT 271 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE----EEeccccccCCCH--HHHHH-HHH-HHHHHcCCceEEEEe
Confidence 22344567789999999999984 2322211 01011 11133 445 778899999887553
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=101.92 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|++. |..++|+|+|..|+..++-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999765410 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
++.+..+|+.+. +..++||+|++... ++ ..++..++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567887662 34689999998753 43 4568899999999983 4554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-10 Score=103.59 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..++--+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 346899999999999999999999999999999999776622210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++++.++|+.+... .++||+||.. |||+..+++..+++.+...|+|||.+|-- |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g-----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG-----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE-----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE-----EecCCcc
Confidence 1237889999877543 5899998854 79998888999999999999999999941 3333210
Q ss_pred -CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 328 -QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 328 -~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.. ......+.+.+++.+. |..++
T Consensus 153 ~~w---gh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RRW---GHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HHT---T-S--HHHHHHHHHHH-SEEEE
T ss_pred ccc---CcccchHHHHHHHHHH-hhhee
Confidence 01 1345889999999875 55554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-09 Score=100.52 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||.|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4789999999999999999999 6 7899999999998766622211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh----------------hhHHHHHHHHHHhccCCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----------------HNIVEYIEIISRILKDGG 310 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta----------------~ni~~yl~~I~~~LKpGG 310 (394)
...++++++.+|+.++.. .....+||+|+++ ||-... -++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 122458999999988754 2344579999988 663221 246788999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP 366 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~ 366 (394)
.+.-+-| .....||..++.+++|...+...+.+.=...+
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A 203 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFVYPKIGKAA 203 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEecCCCCCcc
Confidence 9974322 23678999999999999988776555444444
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=99.16 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=76.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..+.+.+.. .++.+|||+|||+|.++..|+++ +-.|+|+|+|..|+..++-.++..
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 345555554432 25679999999999999999875 358999999999987655222110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
...+++++..+|+.+... ..+.||+|+...-+.. +.+.+.+.|||||+
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~ 168 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAST------IPSALVRQLKDGGV 168 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcch------hhHHHHHhcCcCcE
Confidence 011236788899876532 2468999987654432 33578899999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
+|-
T Consensus 169 lvi 171 (205)
T PRK13944 169 LVI 171 (205)
T ss_pred EEE
Confidence 974
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=117.50 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 4679999999999999999875 57999999999999655411100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-------------ta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.+.++.++.+|+.++.. .+.+++||+|++++.++ ...++...|++++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01125678888877531 12457899999875332 2356789999999999999999964
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=94.10 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.++|++ +..|+|+|+|..|+..++-.++..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-------------------------------- 87 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-------------------------------- 87 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 5679999999999999999875 478999999999987655221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. ..+++++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||+++-
T Consensus 88 ------~-~~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 88 ------G-VKNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred ------C-CCCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 0 0136777888765332 1123456653 23344577899999999999999985
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=99.81 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
+++.+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..++..+...
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---------------- 125 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 44555554432 26779999999999999999998544 999999999997766333210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
. -.++.++.+|+.+... ..+.||+|+..... ..+.+.+.+.|||||++
T Consensus 126 ----------------------g-~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 126 ----------------------G-LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGIL 173 (215)
T ss_pred ----------------------C-CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEE
Confidence 0 0236788899877532 24689999865432 23456788999999999
Q ss_pred EE
Q 016155 313 IN 314 (394)
Q Consensus 313 IN 314 (394)
|-
T Consensus 174 v~ 175 (215)
T TIGR00080 174 VM 175 (215)
T ss_pred EE
Confidence 84
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-09 Score=98.33 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|+++. -.|+|+|++. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 56799999999999999998874 4799999988 41 0 01
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEeccc---CC-hhh-------HHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCFFI---DT-AHN-------IVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-----~~~~~~~fD~VvT~fFl---Dt-a~n-------i~~yl~~I~~~LKpGG~ 311 (394)
++.++.||+.+... .+...+.||+|++.... .. ..+ +...|+.++++|||||+
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 25678888877310 01235789999985422 11 111 24689999999999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++-
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 985
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=100.35 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=86.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-------------------------------- 63 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-------------------------------- 63 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------------
Confidence 4569999999999999999998 578999999999997654221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc---CChh--h---HHHHHHHHHHhccCCcEEEEecCcch
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAH--N---IVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl---Dta~--n---i~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
.. .++.++.+|+.++.......+.+|.|+..|=. ...+ + ..++++.++++|||||.++-...
T Consensus 64 ------~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--- 133 (194)
T TIGR00091 64 ------GL-KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD--- 133 (194)
T ss_pred ------CC-CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---
Confidence 00 24788999987653111124689999876511 1100 1 14789999999999999973211
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEE
Q 016155 321 HFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 354 (394)
Q Consensus 321 h~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~ 354 (394)
...-.+++.+++.+.| |+.+.
T Consensus 134 -------------~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 134 -------------NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -------------CHHHHHHHHHHHHhCCCeEecc
Confidence 1123455666666655 87765
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=100.55 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..++.-.+. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~----~---------------------------- 168 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER----H---------------------------- 168 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------------
Confidence 3468999999999999999987 57999999999999777632211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIIS 303 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~ 303 (394)
....++.++.+|+.+.. ..++||+|++.= |+.. ..-....++.+.
T Consensus 169 ------~~~~~i~~~~~D~~~~~----~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~ 238 (284)
T TIGR03533 169 ------GLEDRVTLIQSDLFAAL----PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred ------CCCCcEEEEECchhhcc----CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 01123788999986632 135799999861 1110 012346688888
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 304 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 304 ~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++|||||+++- + +..+.+++++++.+.||.....
T Consensus 239 ~~L~~gG~l~~--------e----------~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 239 DHLNENGVLVV--------E----------VGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred HhcCCCCEEEE--------E----------ECcCHHHHHHHHHhCCCceeee
Confidence 99999999873 0 1124578899999999977653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=97.99 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+... ..|+|+|+|..|+..++..+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 56789999999999999999986 7899999999999766532210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 302 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt-------------------------a~ni~~yl~~I 302 (394)
....++.++.+|+.+.. ..++||+|++.. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 00123778888876532 247899999862 2221 12235678888
Q ss_pred HHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 303 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 303 ~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.++|||||+++- .|+ ...+++++++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999883 111 12467889999999985543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-09 Score=93.95 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=77.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
-+++.+... +..+|||+|||+|-++..+++++-. |+++|+|..++..++.-+.. +
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n------------ 78 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N------------ 78 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T------------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c------------
Confidence 455666654 4568999999999999999999876 99999999999776532210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-----hhHHHHHHHHHHhcc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-----HNIVEYIEIISRILK 307 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta-----~ni~~yl~~I~~~LK 307 (394)
.. .++.++.+|+.+-. ..++||+|+++-=+... .-+.++++...+.||
T Consensus 79 ----------------------~~-~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 79 ----------------------GL-ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp ----------------------TC-TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred ----------------------Cc-cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 00 11677888876632 25899999998422111 235678999999999
Q ss_pred CCcEEE
Q 016155 308 DGGVWI 313 (394)
Q Consensus 308 pGG~wI 313 (394)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-09 Score=97.00 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=78.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
..+.+...+.+.+.. .++.+|||+|||+|.++..||++. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 334455555555432 256799999999999999998773 58999999999997766433210
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
. ..++.++.||+.+.+. ..+.||+|+....+. ++.+.+.+.|||
T Consensus 125 --------------g-------------~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 --------------G-------------YDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred --------------C-------------CCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 0 0237889999876543 247899997654432 234577889999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999985
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=98.06 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..|+++ |..|+|+|+|..|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 458999999999999999876 67899999999999776632210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 303 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------------------------~ni~~yl~~I~ 303 (394)
.+..++.+|+.+.... ...++||+|++.- |+.+. .-+.+.++.+.
T Consensus 133 --------~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred --------cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 0124567777653210 1135799999772 33211 11346677778
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 304 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 304 ~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++|||||+++-. ++ .-..+++..++++.||+.....
T Consensus 204 ~~L~~gG~l~l~----~~-------------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 204 DWLAPGGHLLVE----TS-------------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HhcCCCCEEEEE----EC-------------cchHHHHHHHHHHCCCCceeeE
Confidence 999999999831 11 1135689999999999876644
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=102.85 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=113.9
Q ss_pred HHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH-Hh
Q 016155 133 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC-SS 210 (394)
Q Consensus 133 ~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~-s~ 210 (394)
=|...++.=+.... | +......+..|-+.|.... .++.++||+|||.--.-..-|..-| +++..|++..=+.. -+
T Consensus 21 Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~k 97 (256)
T PF01234_consen 21 YLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEK 97 (256)
T ss_dssp HHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHH
T ss_pred HHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHH
Confidence 35555543332222 2 2234456666666665332 2567999999998555333344444 58999999877632 23
Q ss_pred hhhhccccccccccccccccccCCCC-------cccCccccccCCCCCCCCCCCCce-eEEecccccccCCCC---CCCC
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGF-SMCGGDFVEVYSDPS---QVGA 279 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~-------~~~qlr~v~iPDv~p~~~~~~~~l-s~~~GDf~ely~~~~---~~~~ 279 (394)
++ +.. .+..|+ ||+..-++... .+.++|. .+ .++..|.+..-..+. ...+
T Consensus 98 Wl-~~~-~a~DWs--~~~~~v~~lEg~~~~~~e~e~~lR~---------------~Vk~Vv~cDV~~~~pl~~~~~~p~~ 158 (256)
T PF01234_consen 98 WL-RKE-GAFDWS--PFWKYVCELEGKREKWEEKEEKLRR---------------AVKQVVPCDVTQPNPLDPPVVLPPK 158 (256)
T ss_dssp HH-TT--TS--TH--HHHHHHHHHTTSSSGHHHHHHHHHH---------------HEEEEEE--TTSSSTTTTS-SS-SS
T ss_pred HH-CCC-CCCCcc--HHHHHHHhccCCcchhhhHHHHHHH---------------hhceEEEeeccCCCCCCccccCccc
Confidence 33 222 222222 33222221111 1112221 11 355566655321111 1246
Q ss_pred ccEEEEecccCCh-hhHHHH---HHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 280 WDAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 280 fD~VvT~fFlDta-~ni~~y---l~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
||+|+|+|.|+.+ +++.+| ++.|.++|||||++|-.|-|--.+.. .|+.....+.|+.+.|++.++++||+++..
T Consensus 159 ~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 159 FDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 9999999998865 455555 77778899999999976655322221 232223467899999999999999999986
Q ss_pred eeccccCCCCcccccccccceEEE-EEEE
Q 016155 356 KTIETTYTTNPRSMMQNRYFTAFW-TMRK 383 (394)
Q Consensus 356 ~~i~~~Y~~d~~sm~~~~Y~~~f~-va~K 383 (394)
+. ......|...|| +|||
T Consensus 238 ~~----------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 238 EK----------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EG-----------TTTB---EEEEEEEEE
T ss_pred cc----------ccCcCCCCcEEEEEEeC
Confidence 61 223355666666 7877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=80.52 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=75.7
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
+|||+|||.|.++..++. .+..++++|.+..++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 677999999999998655421000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.+..+|+.+... ...++||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001126778888877532 12478999998877666 67788999999999999999973
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-09 Score=105.05 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..|.+.+|.. ...+|||+|||+|.++..+++++ ..|+++|.|+.|+..++.-+.. + .
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n-------------~- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----N-------------M- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-------------C-
Confidence 4455666643 34699999999999999999984 7899999999999877632210 0 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC---ChhhHHHHHHHHHHhccCCc
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD---ta~ni~~yl~~I~~~LKpGG 310 (394)
+. ...++.+..+|+.+-. ..++||+|+++ |+.. +.....+.|+.++++|||||
T Consensus 277 -----------~~-------~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------PE-------ALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------cc-------cCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 00 0123677888875422 23589999997 4422 22234578999999999999
Q ss_pred EEEEe
Q 016155 311 VWINL 315 (394)
Q Consensus 311 ~wIN~ 315 (394)
.++-+
T Consensus 335 ~L~iV 339 (378)
T PRK15001 335 ELYIV 339 (378)
T ss_pred EEEEE
Confidence 99854
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-08 Score=102.33 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..... +
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~---------------------------- 298 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L---------------------------- 298 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------------
Confidence 3458999999999999999875 57899999999999776632210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh--------------------h----hHHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA--------------------H----NIVEYIEIIS 303 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta--------------------~----ni~~yl~~I~ 303 (394)
+.++.++.+|+.+... + ..++||+|+++= |+.+. + -+.+.++.+.
T Consensus 299 --------g~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 299 --------GARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred --------CCcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 0126788899865321 1 135799999862 33221 1 1234566667
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 304 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 304 ~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.|||||.++. +|. --.+++++++++.||..++..
T Consensus 369 ~~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 89999999873 111 135789999999999876543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=94.40 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+...+.+.+.. .++.+|||+|||+|.++..|++++..|+++|.|..|+..++-.+...
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 344455554432 25679999999999999999999779999999999987665332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. -.++++..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|-
T Consensus 124 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 --------G-------------LHNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred --------C-------------CCceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 0 0126788888765432 24789999865432 2335677899999999984
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=102.37 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..+++++ ..|+++|+|..|+..++.-+.. +. +
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n~-------------------l-------- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----NG-------------------L-------- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC-------------------C--------
Confidence 4589999999999999999985 4899999999999877633211 00 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCC-hhhHHHHHHHHHHhccCCcEEEEec
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F---lDt-a~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
...++.+|+.+. ..+.||+|++.. | +++ .....++|+.+.+.|||||.++-+.
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 024456665442 147899999874 2 233 3456789999999999999997543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=93.60 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|.|...|.+ ++-.++|+|++...+..+-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv--------------------------------------- 53 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV--------------------------------------- 53 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH---------------------------------------
Confidence 567999999999999888866 7999999999998874221
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----Eec---------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLG--------- 316 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI----N~G--------- 316 (394)
..+++.++||+.+--. .+.+++||.||-.--|....+..+.|+++.|+ |..-| |||
T Consensus 54 -------~rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 54 -------ARGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred -------HcCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH
Confidence 1236678888755211 24579999999766666667777777777665 54555 332
Q ss_pred -----C----cchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 317 -----P----LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 317 -----P----Llyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
| |-|.|.+. |+.. .+|..|++++..+.|++|++...+.
T Consensus 123 ~~GrmPvt~~lPy~WYdT----PNih-~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDT----PNIH-LCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred hcCCCCCCCCCCCcccCC----CCcc-cccHHHHHHHHHHCCCEEEEEEEEc
Confidence 1 11333322 2111 4699999999999999999876433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=97.41 Aligned_cols=122 Identities=12% Similarity=0.172 Sum_probs=85.1
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 173 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+|||+|||+|.++..||.. +..|+|+|+|..|+..++.-+.. +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~----~------------------------------ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER----H------------------------------ 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h------------------------------
Confidence 68999999999999999987 46899999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 305 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~~~ 305 (394)
...+++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 011237889999876321 35799999861 1110 11234678888999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|||||+++- + +..+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~--------E----------~g~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVV--------E----------VGNSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEE--------E----------ECcCHHHHHHHHhhCCCEEEE
Confidence 999999973 0 111345688888888886654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=101.35 Aligned_cols=130 Identities=26% Similarity=0.312 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh--hhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~ 231 (394)
-.++.|+++.. ++.+|||+|||+|-|+..-+++|. .|.|+|+++..+..++.- +|...
T Consensus 150 lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-------------- 210 (295)
T PF06325_consen 150 LCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-------------- 210 (295)
T ss_dssp HHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T--------------
T ss_pred HHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC--------------
Confidence 46777777643 567999999999999999999998 599999999998766632 11110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
.++.. ....+. ..++||+|+.+-..+. +...+..+.++|||||+
T Consensus 211 --------------------------~~~~v--~~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~ 254 (295)
T PF06325_consen 211 --------------------------DRIEV--SLSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGY 254 (295)
T ss_dssp --------------------------TCEEE--SCTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEE
T ss_pred --------------------------eeEEE--EEeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCE
Confidence 11211 111111 2378999998765444 56788999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|--|=| .=-.+++++.+++ ||++++..
T Consensus 255 lIlSGIl----------------~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 255 LILSGIL----------------EEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEEEE----------------GGGHHHHHHHHHT-TEEEEEEE
T ss_pred EEEcccc----------------HHHHHHHHHHHHC-CCEEEEEE
Confidence 9964322 2256788898977 99998755
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=98.99 Aligned_cols=136 Identities=28% Similarity=0.277 Sum_probs=94.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
-.+++|+++.- ++.+|||+|||+|-|+...+++|.. |.|+|+.+..+.+|+- |... |..
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~~--N~v----------- 210 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NARL--NGV----------- 210 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHHH--cCC-----------
Confidence 46677777653 6789999999999999999999986 9999999999987763 2110 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
... ......+-.+.. ..+.||+||.+-. |.=+......|+++|||||++|
T Consensus 211 --~~~---------------------~~~~~~~~~~~~----~~~~~DvIVANIL---A~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 211 --ELL---------------------VQAKGFLLLEVP----ENGPFDVIVANIL---AEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred --chh---------------------hhcccccchhhc----ccCcccEEEehhh---HHHHHHHHHHHHHHcCCCceEE
Confidence 000 000011111111 2368999998763 3346789999999999999999
Q ss_pred EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
--|=| .=-.+.+.+.+++.||++++..
T Consensus 261 lSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 261 LSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 64421 1126788889999999999854
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=96.38 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=95.2
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA-~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+..||++|||||+.--.+- ..|-.||++|-++.|-.++.. .+.++ ++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~k---s~~E~----------------------k~------ 124 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADK---SAAEK----------------------KP------ 124 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHH---HHhhc----------------------cC------
Confidence 56678999999999844443 468899999999999865552 11111 11
Q ss_pred CCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCc------
Q 016155 250 HPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPL------ 318 (394)
Q Consensus 250 ~p~~~~~~~~l-s~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~----GPL------ 318 (394)
.++ .|+.++-.++... .++++|+||..|.|=..++..+.|+++.++|||||++|-+ |+-
T Consensus 125 --------~~~~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 125 --------LQVERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred --------cceEEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 123 3777777666432 4789999999999888889999999999999999999942 211
Q ss_pred -------chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 -------LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 -------lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+||+..+ .=.|++ |+-++|+.+-|+++..+
T Consensus 195 ~q~v~ep~~~~~~d-------GC~ltr-d~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 195 LQQVAEPLWHLESD-------GCVLTR-DTGELLEDAEFSIDSCK 231 (252)
T ss_pred HHHHhchhhheecc-------ceEEeh-hHHHHhhhcccccchhh
Confidence 1222211 123444 35567778889988855
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=96.97 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
.+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------------------- 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------------------- 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------------------------------
Confidence 3579999999999999999874 358999999999997665211
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChh---------h-HHHHHHHHHHhccCCcEEE
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~---------n-i~~yl~~I~~~LKpGG~wI 313 (394)
.++.+..+|+..... .++||+||++ |+..... . ...+++.+.++|+||+..+
T Consensus 97 ------------~~~~~~~~D~~~~~~----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 97 ------------PEATWINADALTTEF----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ------------cCCEEEEcchhcccc----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 014567788875321 4689999999 6532211 1 4457888889888877643
Q ss_pred --EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 314 --NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 314 --N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
++.|.-|.+..-+. ..-..+-.+..+..++-|.....-=.|++.|
T Consensus 161 P~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (241)
T PHA03412 161 PQMSANFRYSGTHYFR----QDESTTSSKCKKFLDETGLEMNPGCGIDTGY 207 (241)
T ss_pred CcccccCcccCcccee----eccCcccHHHHHHHHhcCeeecCCCCcccee
Confidence 34444443221110 0112456778888888887665544566554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-08 Score=91.77 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=102.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHH-HHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM-ICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML-~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.||++.|+++++.. +.+||++|||||-.+..+|+. ...-|--|.....+ .+..++...
T Consensus 12 ~pIl~vL~~~l~~~----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDS----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------------- 72 (204)
T ss_pred hHHHHHHHHHhCcc----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc---------------
Confidence 58999999999853 226999999999999999988 34556778777664 222222110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhcc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~f--FlDta~ni~~yl~~I~~~LK 307 (394)
...+..+++. +.+...+ -.+-. -+...+.||+|++.- .|-.-+.....|+...++||
T Consensus 73 -----~~~Nv~~P~~--------------lDv~~~~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~ 132 (204)
T PF06080_consen 73 -----GLPNVRPPLA--------------LDVSAPP-WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK 132 (204)
T ss_pred -----CCcccCCCeE--------------eecCCCC-CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC
Confidence 0001111211 1111110 00000 011347899999885 45556668889999999999
Q ss_pred CCcEEEEecCcchhhhhc------c-----CCCCCcccc-CCHHHHHHHHHhCCCEEEEEe
Q 016155 308 DGGVWINLGPLLYHFADL------Y-----GQEDEMSIE-LSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 308 pGG~wIN~GPLlyh~~~~------~-----g~~~~~~ie-LS~eEl~~ll~~~GF~ii~e~ 356 (394)
|||+++-+||..+.-.-. + ...| ... -..|+|.+++.+.|++.++..
T Consensus 133 ~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 133 PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCccc
Confidence 999999999987752110 0 0122 222 278999999999999987643
|
The function of this family is unknown. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=92.93 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+|||+|||+|.++..||..+ ..|+|+|+|..|+..++..... +
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 305 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~~~ 305 (394)
....++.++.+|+.+.. ..++||+||++= |+.. ...+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~----~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPL----AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccC----cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 00123778899987632 124799999861 2211 12355788899999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHH-hCCCEEEEE
Q 016155 306 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~-~~GF~ii~e 355 (394)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 221 13456777777 478976543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=90.67 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=66.4
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCc-------chhhh-hc---
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-DL--- 325 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN--~GPL-------lyh~~-~~--- 325 (394)
+++++.||+.++. ..+++||+|++.|-+...+|..+.+++++++|||||.++. +++. ++.|. ..
T Consensus 27 ~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 4789999998863 4568999999888777667889999999999999999974 2211 11110 00
Q ss_pred -----cCCCCC-----cc--ccCCHHHHHHHHHhCCCEEEEEe
Q 016155 326 -----YGQEDE-----MS--IELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 326 -----~g~~~~-----~~--ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.... .+ -.++.+|+.++++++||+.+...
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 000000 01 13599999999999999987644
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-08 Score=94.92 Aligned_cols=160 Identities=18% Similarity=0.274 Sum_probs=100.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.++.+..++++.... ...+||.+|||.|...+-|.+- +..|.+.|+|+-.+..-+ ++. .-..-..++|+
T Consensus 56 wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk---~~~-~~~e~~~~afv-- 128 (264)
T KOG2361|consen 56 WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK---KSS-GYDESRVEAFV-- 128 (264)
T ss_pred HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH---hcc-ccchhhhcccc--
Confidence 455666666664321 3348999999999999999765 578999999998874322 111 00111111111
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc--ccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRIL 306 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e--ly~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~L 306 (394)
-|++. +.. +...+++|+|+..|.|- ..+.....|+.++++|
T Consensus 129 ----------------------------------~Dlt~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 129 ----------------------------------WDLTSPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred ----------------------------------eeccchhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 12211 111 23468999998888654 2345788999999999
Q ss_pred cCCcEEEE--ecC-----cchhhhhc------cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 307 KDGGVWIN--LGP-----LLYHFADL------YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 307 KpGG~wIN--~GP-----Llyh~~~~------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||||.++- +|- |.++-... -.++....+.++.|||..+++++||..++..
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence 99999984 331 11110000 0112234678999999999999999887643
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=96.95 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=90.0
Q ss_pred cCcc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 140 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 140 DWS~----eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
+|+. ..+.||.. |..+.|.+ +|.. ...+|.|+|||.|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLla~-Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLLAR-VPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHHhh-CCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5765 46677765 55555544 5543 5679999999999999999999 7889999999999975541
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ 293 (394)
..|| .+|..||..++.. ...+|+++++-.+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 1222 5778899988753 46789999875444444
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 016155 294 NIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wI 313 (394)
+-.+.|..+...|.|||++-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred ccHHHHHHHHHhhCCCceEE
Confidence 45578999999999999997
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-08 Score=97.05 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++.++++. +. .|+++|++..|+..++--+.... ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~---------------~~-------------- 126 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA---------------GG-------------- 126 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc---------------cc--------------
Confidence 4679999999999999999987 54 79999999999976653221000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|..++-. ...++||+|+.-.+-.. +..+ .++++.+++.|||||+++.
T Consensus 127 -----~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 127 -----AYDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -----cccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0001347889999887532 23578999987543221 1122 5789999999999999995
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.3e-08 Score=101.51 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..||.. +..|+|+|+|..|+..++..... +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 57899999999999776632110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 303 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------------------------~ni~~yl~~I~ 303 (394)
...+++.++.+|+.+... .++||+||++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236788899866321 36899999852 22111 12334577888
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 304 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 304 ~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++|||||.++- +| .-..+.+.+++.+.||..++.
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceEE
Confidence 99999999873 11 114578888999999986653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-08 Score=100.05 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..|||+|||+|+.+..+|++ +..++|+|++..|+..+..-. .+. .
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka---~~~-----------------------g----- 170 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI---ELL-----------------------N----- 170 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH---HHc-----------------------C-----
Confidence 4678999999999999999998 578999999999986544111 100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-h--hh----HHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-A--HN----IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a--~n----i~~yl~~I~~~LKpGG~wI 313 (394)
-.|+.++.+|+.++.. ...++++|.|+..|- |. . .. ..++++.++++|||||.|.
T Consensus 171 --------L~NV~~i~~DA~~ll~-~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 171 --------LKNLLIINYDARLLLE-LLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred --------CCcEEEEECCHHHhhh-hCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 1247889999876532 234689999987652 32 1 10 1478999999999999987
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=90.86 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 678999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec--------ccCCh---hhHHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDTA---HNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-----~~~~~~~fD~VvT~f--------FlDta---~ni~~yl~~I~~~LKpGG~ 311 (394)
.++.++.+|+.+... .....+.||+|++.. .++.. .++.+.++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013445556544210 001246799998632 12221 2346789999999999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 985
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=99.17 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||.|.++.++++.+ -+|+++|++..|+..++.- |+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 46799999999999999999885 4899999999999766520 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCcchhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 322 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n-----i~~yl~~I~~~LKpGG~wIN-~GPLlyh~ 322 (394)
++... -...+++++.+|..+... ...++||+|+..+.-...+. -.++++.+.+.|||||+++- .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001247889999887432 23478999998754322111 13689999999999999984 3322111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 323 ADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 323 ~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
. -...++.+.+++.||
T Consensus 422 ~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGL 437 (521)
T ss_pred h------------HHHHHHHHHHHHcCC
Confidence 0 022578888889999
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=92.15 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=81.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
.|...+..+.-.... ++.+||++|||+|.++.++++.+ -.++++|++..|+..++-.+....
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~------------ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA------------ 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc------------
Confidence 355555554443322 34599999999999999998885 479999999999876653221100
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHh
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 305 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~n--i~~yl~~I~~~ 305 (394)
. .+ ...+++++.+|..+... ...++||+|+.-.+ .....+ -.++++.+.++
T Consensus 121 ---~---------~~-----------~~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SY-----------DDPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------cc-----------cCCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 00 01236777788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 016155 306 LKDGGVWIN 314 (394)
Q Consensus 306 LKpGG~wIN 314 (394)
|||||+++-
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-08 Score=92.13 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...-|||+|||+|--+-.|...|+...|+|+|..||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 56789999999999999999999999999999999965541 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-----------cCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-----------IDTAHNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF-----------lDta~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
-.++.+||-+ +.|+..++||.|++.-- =++..-+..+|.+++.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1356678764 44678899999886521 12334466789999999999999983 2
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ 351 (394)
|--++ +=..|.|.+-+.++||-
T Consensus 160 fYpen----------~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPEN----------EAQIDMIMQQAMKAGFG 181 (270)
T ss_pred ecccc----------hHHHHHHHHHHHhhccC
Confidence 21111 22567777778888985
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=96.64 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.-.++||+|||||=.+-.|..+--+.+|+|+|.-||..|. ++ .+|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eK---g~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EK---GLYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hc---cchH------------------------
Confidence 3579999999999999999999899999999999996544 11 1221
Q ss_pred CCCCCCCCceeEEecc---cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-e--cCcchhhhh
Q 016155 251 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-L--GPLLYHFAD 324 (394)
Q Consensus 251 p~~~~~~~~ls~~~GD---f~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~--GPLlyh~~~ 324 (394)
.+.++| |++. ...+.||.|+..=.+.-.-++...+-.+...|+|||.|+- + +|--+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~----~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLED----LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhh----ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 3332 2358899998653332233455678889999999999983 1 221122211
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|...+-=+..-++.++...||+++..+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEee
Confidence 1111233478889999999999999855
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-08 Score=86.28 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++.+|++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998654411100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.++.+|+.++.. ..+.||.|+++.-.. +.+-+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 0237789999988632 234699999874222 22223333332 1245777776
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=93.97 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=75.6
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRL-ALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL-a~eLA~-~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+.+||++|||-|.+ +.-+++ ++ -.++|+|.|..|+..|+-.....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 568999999997766 444443 32 35999999999998777332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+ ...+++.|..+|..++.. ..+.||+|++...++ +.++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999988642 246899998884444 246688999999999999999994
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=93.99 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|++..+.. . +
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~----- 203 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------A----- 203 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------c-----
Confidence 46699999999999999999875 589999999999977662 111110000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCcchh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt----a~ni--~~yl~~I~~~LKpGG~wIN~-GPLlyh 321 (394)
-...+++++.+|..++-. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 204 ------~~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 204 ------FFDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred ------CCCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 012358889999987532 23578999987643 21 1122 46899999999999999862 111111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..-.-.+.+.++++||....-..
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEE
Confidence 00112367788899997775443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-07 Score=86.49 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 127 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 127 ~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
++..-.-.++=+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 4555566777788898652 23477777643 2 4567889999999999664 35677877776430
Q ss_pred HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 016155 207 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 286 (394)
Q Consensus 207 ~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~ 286 (394)
| -.+++.|+..+. -.+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vP---L~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVP---LEDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCc---CCCCceeEEEEE
Confidence 0 134677887764 357999999999
Q ss_pred cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 287 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 287 fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-|.- .|..+||++.+|+|||||.+.-.-. .+..-+.++..+.++++||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV--------------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIAEV--------------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEEEE--------------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEEEe--------------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87764 3799999999999999999874110 1223377899999999999998754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=93.59 Aligned_cols=177 Identities=22% Similarity=0.263 Sum_probs=113.6
Q ss_pred HHHHHhhcCcccChhHHhhchHHHHHHHHhhCCC---CCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 016155 133 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPN---RSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 133 ~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~---~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~ 208 (394)
-++.+-|||.+--..... ..+.+++-.++-+ +..+..+.++|+|||+|.++..|...|. ..+-.|-|+.|+--
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 467788898763222221 2344443322211 1123567899999999999999999996 46789999999843
Q ss_pred HhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc
Q 016155 209 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 288 (394)
Q Consensus 209 s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF 288 (394)
++ ... + |-+ .+++..+| .|.. ++.++++|.|+|..-
T Consensus 111 ~~-------~~q------------------d-------p~i---------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR-------DAQ------------------D-------PSI---------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh-------ccC------------------C-------Cce---------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 22 110 0 111 26777777 3321 356899999998876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCcchhhhhc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 289 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFADL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 289 lDta~ni~~yl~~I~~~LKpGG~wIN--~-GPLlyh~~~~---------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.=..++...+..+...|||+|.||. + |--+|...-. -|..|..+-.--..|+-.|+.++||......
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 55555566899999999999999995 3 4445543221 1223322222345789999999999987643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=90.21 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++..+++. +-.++++|++..|+..++.... .|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~- 113 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP- 113 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC-
Confidence 4568999999999999999876 4689999999999976652110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta----~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.||+.+... ...++||+|+.-.|-... -.-.++++.+.++|+|||+++
T Consensus 114 ------~~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 ------ENGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred ------CCCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 011347889999887532 224689999865442221 123589999999999999997
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=93.30 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=73.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..++..+...
T Consensus 67 ~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------------- 128 (322)
T PRK13943 67 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------------- 128 (322)
T ss_pred HHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 344455444432 2567999999999999999998642 5999999999997666332110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
. .+++.++.||+.+... ..+.||+|+..+-++ ++ ...+.+.|||||+
T Consensus 129 -----------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG~ 175 (322)
T PRK13943 129 -----------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGGR 175 (322)
T ss_pred -----------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCCE
Confidence 0 0136778888776432 236799998765433 22 3456789999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++.
T Consensus 176 Lvv 178 (322)
T PRK13943 176 VIV 178 (322)
T ss_pred EEE
Confidence 874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=88.56 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=79.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.+.. +..+||++|||+|.-+..||.. +-.|+++|.+..++..++..+...
T Consensus 59 ~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~---------------- 116 (234)
T PLN02781 59 FLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA---------------- 116 (234)
T ss_pred HHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4669999999999988877764 358999999999997776433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--C-CCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~-~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
...+++.++.||+.++... + ...++||+| |+|.. ++..+|++.+.++|||
T Consensus 117 ----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 117 ----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred ----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998875210 0 114689998 66754 5567999999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 171 GG~ii~ 176 (234)
T PLN02781 171 GGIIAF 176 (234)
T ss_pred CeEEEE
Confidence 999884
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=80.42 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=90.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
+++.+++|+|||+|.++.|+|..| -+|+|+|-+..++...+. |... +
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~~--------------------------f--- 81 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAAR--------------------------F--- 81 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHHH--------------------------h---
Confidence 367899999999999999999666 479999999999865442 2110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
. -+|+.++.||.-+.... ..+||+| ||--..++.+.|+.....|||||++|-.
T Consensus 82 -------g-~~n~~vv~g~Ap~~L~~---~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~n------------ 134 (187)
T COG2242 82 -------G-VDNLEVVEGDAPEALPD---LPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVAN------------ 134 (187)
T ss_pred -------C-CCcEEEEeccchHhhcC---CCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEE------------
Confidence 0 23588999998775431 2379988 5666678999999999999999999831
Q ss_pred CCCCccccC-CHHHHHHHHHhCCC-EEEEE
Q 016155 328 QEDEMSIEL-SLEDVKRVALHYGF-EFEKE 355 (394)
Q Consensus 328 ~~~~~~ieL-S~eEl~~ll~~~GF-~ii~e 355 (394)
.+.| +.-.+.+.+++.|| +++..
T Consensus 135 -----aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 135 -----AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred -----eecHHHHHHHHHHHHHcCCceEEEE
Confidence 0111 45556677889999 66653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.9e-07 Score=87.39 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...++||+|+|-|..+..+|..--.|++.|.|..|.. .|+. ..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~~v-------------------------- 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGFTV-------------------------- 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCCeE--------------------------
Confidence 5678999999999999999998889999999999952 2321 11211
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcchhhhhccC-
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYHFADLYG- 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GPLlyh~~~~~g- 327 (394)
+ |..++.. ...+||+|.+...||.+.++...|+.|++.|+|+|++|-. =|. -+|-..-+
T Consensus 140 ------------l--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 140 ------------L--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred ------------E--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 1 1122221 2468999988889999999999999999999999999952 222 12322111
Q ss_pred C--CCC-------ccccCCHHHHHHHHHhCCCEEEEEeeccccCCC
Q 016155 328 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 364 (394)
Q Consensus 328 ~--~~~-------~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~ 364 (394)
. .|. .++|=..+-+..+++.+||+++.-. ..+|.-
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t--r~PYLc 245 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT--RLPYLC 245 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe--ccCccc
Confidence 1 121 1222234445678899999998743 346654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-07 Score=91.08 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++...+..|. .|+++|.|..|+..++.-+.. + .+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 467999999999999998887776 899999999999766522210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fFlDta-------~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
..+++++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++-+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 02378899998875310 0124689999866 555442 234566778889999999998421
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHh
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALH 347 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~ 347 (394)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 1 224567777776653
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-07 Score=88.35 Aligned_cols=108 Identities=24% Similarity=0.273 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++.++++.. -.|+.+|++..|+..++--+ | .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~---------------------~ 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------P---------------------D 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------h---------------------h
Confidence 46799999999999999999984 47999999999997665221 1 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
+.. .....++.++.+|..+.... ...++||+|+.-.+-.. +.. -.++++.++++|+|||+++.
T Consensus 138 ~~~--~~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 138 LAV--GFDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hcc--ccCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 000 00123588999998764321 12468999986543211 111 24789999999999999975
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-07 Score=91.97 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|..+..++.++ ..|+|+|+|..|+..++..+...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------------------------------- 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------------------------------- 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999885 48999999999997655222110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhH-------HHHHHHHHHhc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 306 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f------------FlDta~ni-------~~yl~~I~~~L 306 (394)
+-++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 292 --------g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 292 --------GLKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred --------CCCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00145677887764210 12467999983 22 11223333 36799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 354 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~-~GF~ii~ 354 (394)
||||+++-..--+ ..+=+.+.+...+++ -+|+++.
T Consensus 363 kpGG~lvystcs~-------------~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSI-------------LPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCC-------------ChhhCHHHHHHHHHhCCCCEEec
Confidence 9999998311000 112245677777765 4787665
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-06 Score=86.78 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||-|....-....+. .+.|+|+|..-|.-|+--.+...+.. ...+. ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~----------------~~~~~-~~~f--- 121 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRN----------------NSKQY-RFDF--- 121 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTST----------------T-HTS-EECC---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccc----------------ccccc-cccc---
Confidence 678999999999998888888875 68899999999855443221111000 00000 0011
Q ss_pred CCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~e-----ly~~~~~~~~fD~VvT~f----FlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||.
T Consensus 122 ---------~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 122 ---------IAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp ---------EEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---------hhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 13456665542 122 1246999986555 256888888899999999999999994
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=98.07 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=93.0
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4589999999999999999875 5899999999999777632211 0 000000 0000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------hh----------------------------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 294 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta------~n---------------------------- 294 (394)
........+++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112358999999877432 1123699999982 33211 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHH-HHHHhCCCEEEEEe--eccccCCCCcc
Q 016155 295 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK--TIETTYTTNPR 367 (394)
Q Consensus 295 ---i~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~-~ll~~~GF~ii~e~--~i~~~Y~~d~~ 367 (394)
+.+.++...++|||||.++- +|. --.+.+. +++++.||+.++.. .+-..=.+|..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~ 315 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLWQTKINQAADTDIS 315 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEeeehhhhccccchH
Confidence 13345666689999998873 331 0235677 68999999987754 23333344444
Q ss_pred cc
Q 016155 368 SM 369 (394)
Q Consensus 368 sm 369 (394)
.|
T Consensus 316 ~~ 317 (1082)
T PLN02672 316 AL 317 (1082)
T ss_pred HH
Confidence 33
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-07 Score=86.98 Aligned_cols=102 Identities=18% Similarity=0.286 Sum_probs=69.8
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
.++|+|||+|--+.-+|..--+|.|+|.|..||-.+. .+.. ..+ ..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~---k~~~--~~y--------------------------~~--- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK---KHPP--VTY--------------------------CH--- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh---cCCC--ccc--------------------------cc---
Confidence 7899999999777888887668999999999996443 1100 000 00
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhh
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFAD 324 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f-FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~ 324 (394)
...+|...++.+|.+. +++.|+|++. + +.| +.++++.++|+|||.|-.| +.|.|.+
T Consensus 82 ----t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i----avW~Y~d 140 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLGG---EESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI----AVWNYND 140 (261)
T ss_pred ----CCccccccccccccCC---CcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE----EEEEccC
Confidence 1145666677777652 5899998754 2 333 5689999999999877555 3455553
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=80.51 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eL-A~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...++||.|||-||.+..| ...--.|.-+|.....+..|+--+.. . ..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC----------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC----------
Confidence 5679999999999999866 55545789999999999766522110 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE---EecCcchhhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLYHFAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wI---N~GPLlyh~~~ 324 (394)
.--.+...-+.++.+ ..++||+|.+-+.+- |-.++++||+.....|+|||+.| |+..--+..-|
T Consensus 104 --------~v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D 172 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFD 172 (218)
T ss_dssp --------CEEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEE
T ss_pred --------CcceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccC
Confidence 002333333344432 247999999887543 34569999999999999999998 55432211011
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
....++.-|.+.++++++++|+++++++
T Consensus 173 ----~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 173 ----EEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp ----TTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ----CccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 1124788899999999999999999966
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.1e-07 Score=98.39 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+++|+|..|+..++.-+.. + .+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 467999999999999999999997 499999999999776632211 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC---------hhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt---------a~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
..+++++.+|+.++... ..++||+||.. +|... ..+..+++..+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLKE--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHHH--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 02378899998775321 14689999875 44321 23455678888899999999873110
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+-.++.+ .+++.+.||++....
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEIT 679 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEEe
Confidence 0112222 667778899887643
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=84.43 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=100.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
|+.+.+.+.-- -..+.+.+|||-.-|+|..|.+-+++|. .|..+|-...-|..| +|-||-+.
T Consensus 119 P~~Dt~~Kv~~-V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr~--- 181 (287)
T COG2521 119 PLEDTLAKVEL-VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSRE--- 181 (287)
T ss_pred cHHHHHhhhhe-eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCcc---
Confidence 45555554211 1123688999999999999999999999 999999998776422 23344321
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
+.. ..+.++.||..++-. .+.+++||+|+-- |-+-+.---.++.++++|+|||||
T Consensus 182 -------l~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 182 -------LFE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred -------ccc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 110 137889999988654 3568899999843 445553334578999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+.. |-..+|.. -....+ ...+.+.|.++||+.++
T Consensus 240 rlFH-------YvG~Pg~r-yrG~d~-~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 240 RLFH-------YVGNPGKR-YRGLDL-PKGVAERLRRVGFEVVK 274 (287)
T ss_pred cEEE-------EeCCCCcc-cccCCh-hHHHHHHHHhcCceeee
Confidence 9874 33222100 001122 35677788899999776
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=85.37 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 128 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+-.-.-.++=+.-|.... ...|+..|+.. | ...-|-|.|||-++||. ..-..|...|+-.
T Consensus 150 dlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec----
Confidence 334444555566787652 23477888765 2 45678899999999975 2222333333211
Q ss_pred HHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 016155 208 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287 (394)
Q Consensus 208 ~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f 287 (394)
.+=.+++.||..+. -++++.|++|.|.
T Consensus 210 --------------------------------------------------~~~~V~~cDm~~vP---l~d~svDvaV~CL 236 (325)
T KOG3045|consen 210 --------------------------------------------------VNERVIACDMRNVP---LEDESVDVAVFCL 236 (325)
T ss_pred --------------------------------------------------CCCceeeccccCCc---CccCcccEEEeeH
Confidence 11245778998864 4689999999998
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 288 FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-|.- .|+.++|++++|+|||||+|--. -+ .+..-+.-.+.+.++++||++.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IA-Ev-------------~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIA-EV-------------KSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEE-eh-------------hhhcccHHHHHHHHHHcCCeeeehh
Confidence 7654 37999999999999999987420 00 1233356668899999999998744
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=90.81 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..++++ +..|+|+|+|..|+..++-.++.. .+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999997655322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e----cc--------cCChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----FF--------IDTAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~----fF--------lDta~ni-------~~yl~~I~~~ 305 (394)
.++.++.+|+.++.. .+.||+|+. | .+ ..+..++ .+.|..++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778889877532 468999983 1 11 1122222 2579999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 367 lkpgG~lv 374 (445)
T PRK14904 367 LKPGGVLV 374 (445)
T ss_pred cCCCcEEE
Confidence 99999998
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=81.73 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhcCcccC-h-------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 016155 128 DKVRCIIRNIVRDWAAEG-K-------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 192 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg-~-------------~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~- 192 (394)
..|..+++.+-|++--.. . .++...-+.+...+.+.+.- +++.+||++|||+|.++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 567777777777663211 0 11222334456666665542 37889999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc
Q 016155 193 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 270 (394)
Q Consensus 193 G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el 270 (394)
| ..|+++|....++..|+-.|.... ..++.++.||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 4 369999999999877775553211 12478899997664
Q ss_pred cCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 016155 271 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 317 (394)
Q Consensus 271 y~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~GP 317 (394)
+. ....||.|+...-....+ ..+.+.||+||++|- +++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 43 357899998877665543 346778999999996 553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-07 Score=92.17 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCC-CCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 156 ILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 156 Il~~L~~~~p~~~~~-~~~~VLvpGCGlGRLa~eLA~~G------f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
|...|.+........ +...|||+|||+|-|+...++.| ..|.|+|-+..+..+.+.+++. +.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~----n~------- 238 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA----NG------- 238 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH----TT-------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh----cC-------
Confidence 334555554432111 35789999999999998888776 6899999998777655433221 11
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHh
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRI 305 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~ 305 (394)
..+.+.++.||++++.. .++.|+||+= .|++.. -..+.|....|.
T Consensus 239 ---------------------------w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~rf 286 (448)
T PF05185_consen 239 ---------------------------WGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADRF 286 (448)
T ss_dssp ---------------------------TTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGGG
T ss_pred ---------------------------CCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHhh
Confidence 12348899999999865 3689999987 477765 466789999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||+.|
T Consensus 287 Lkp~Gi~I 294 (448)
T PF05185_consen 287 LKPDGIMI 294 (448)
T ss_dssp EEEEEEEE
T ss_pred cCCCCEEe
Confidence 99999999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=83.08 Aligned_cols=111 Identities=26% Similarity=0.304 Sum_probs=81.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|-+.. +..+||++|+|+|.-+..||.. +-.++.+|.+..+...|+-.+..+.
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--------------- 94 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--------------- 94 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---------------
Confidence 555555543 4669999999999999999975 5699999999999987775543321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
..++++++.||..++... ....++||+| |||.. .+-.+|++.+.++|+|
T Consensus 95 -----------------------~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 95 -----------------------LDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp -----------------------GGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred -----------------------CCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 123488899999875320 1123689998 78866 4577899999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=78.18 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=116.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccc-------cCCCCcccCc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 241 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~-------sn~~~~~~ql 241 (394)
.+..+||+||-.|.|+..||+. | -.+.|+|+....+-.|+.-+.+-......+.--|++++ |+ .+..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 5678999999999999999988 4 35899999999987776443321110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-----ccCC-hhhHHHHHHHHHHhccCCcEEEEe
Q 016155 242 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----FIDT-AHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 242 r~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-----FlDt-a~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
-...+||-. .-...|..+...||++.- ...||+|++.- .|.- -+.+..+|+.|+++|.|||++| +
T Consensus 137 ~t~~~p~n~---~f~~~n~vle~~dfl~~~-----~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNV---WFQKENYVLESDDFLDMI-----QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcch---hcccccEEEecchhhhhc-----cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 122233211 012345677777787542 47899998652 3543 3559999999999999999999 5
Q ss_pred cCcchh-hhhc------cCCCCCccccCCHHHHHHHHHh--CCCEEEEEee-ccccCCCCcccccccccceEEEEEEEcC
Q 016155 316 GPLLYH-FADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEKT-IETTYTTNPRSMMQNRYFTAFWTMRKKS 385 (394)
Q Consensus 316 GPLlyh-~~~~------~g~~~~~~ieLS~eEl~~ll~~--~GF~ii~e~~-i~~~Y~~d~~sm~~~~Y~~~f~va~K~~ 385 (394)
-|--|. |... .. .....+.|.+|....++.+ .||+-.+... +.+.|.+ .+.....+-+|+.
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk--------gf~R~i~~y~Kk~ 278 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK--------GFDRPILLYRKKL 278 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc--------cccceeeeeeccC
Confidence 666554 2211 01 1113578899999998885 4777665442 4444432 3344445556654
Q ss_pred c
Q 016155 386 V 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 279 ~ 279 (288)
T KOG2899|consen 279 H 279 (288)
T ss_pred C
Confidence 3
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=81.16 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+..|||+|||||+|+.-.+.+| ..|.|+|+...++.+++-..+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------------------------------
Confidence 56689999999999999999999 7899999999999877622110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...++.|+.+|..++. ..||.|+++ |=+..-.--..++....++- - ..|....
T Consensus 91 ------l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~------vVYsiH~--- 145 (198)
T COG2263 91 ------LLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHADRPFLLKALEIS----D------VVYSIHK--- 145 (198)
T ss_pred ------hCCceEEEEcchhhcC------CccceEEECCCCccccccCCHHHHHHHHHhh----h------eEEEeec---
Confidence 1234889999988764 578888776 31111000112222222211 1 1232111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe----eccccCC
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYT 363 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~----~i~~~Y~ 363 (394)
--+.+-+++.....||++.... .++..|.
T Consensus 146 -------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~ 178 (198)
T COG2263 146 -------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYP 178 (198)
T ss_pred -------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence 1288899999999999988743 3444554
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-06 Score=83.86 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.+.. +..+||++|+|+|.-+..+|.. +-.|+++|.+..++..|+-.+..+
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4679999999999999999973 346999999999987776433221
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
....++.++.||+.++... ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998875320 0113689977 78876 4577999999999999
Q ss_pred CcEEEEecCcchh
Q 016155 309 GGVWINLGPLLYH 321 (394)
Q Consensus 309 GG~wIN~GPLlyh 321 (394)
||++|- ...+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999883 335564
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-06 Score=77.71 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=99.1
Q ss_pred chHHHHHHHHhhCCCC-CCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 152 CYKPILEELDALFPNR-SKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~-~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
+-..++++|....-.. ..+.+.++|++||=....+.. ..+ |+|+.+|+.. .
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-~------------------------ 83 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-Q------------------------ 83 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC-C------------------------
Confidence 3345778887765322 122458999999965554332 233 5788888754 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
.-.+.+.||.+...+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 84 -----------------------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 84 -----------------------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred -----------------------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 01346789998643334578999998775 7778888889999999999
Q ss_pred cCCcE-----EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 307 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 307 KpGG~-----wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||+|. +.-+-|+--+- .+.-++.+-+..+++.+||..++.+
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv~---------NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCVT---------NSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCCccCcceEEEEeCchHhh---------cccccCHHHHHHHHHhCCcEEEEEE
Confidence 99999 66666664431 1457899999999999999999865
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-06 Score=80.29 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=82.1
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|||+|-+|..||+.+- .|+|+|+|...|.+|+--... + .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~----~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER----N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 799999999999999999985 899999999999877621110 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHhc
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 306 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta------------------------~ni~~yl~~I~~~L 306 (394)
. .++.++.+|.++-. .++||+||++= ||... .-+...+..+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445555654422 35899988772 44332 12345677788999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEE
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 354 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~ 354 (394)
+|||+++- .+ | .-..+.+++++.+.| |..+.
T Consensus 229 ~~~g~l~l-----e~-----g-------~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLIL-----EI-----G-------LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEE-----EE-----C-------CCcHHHHHHHHHhcCCceEEE
Confidence 99998883 00 0 114688999999999 55444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-06 Score=74.97 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGR-La~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.|-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|++...+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 3667788877654 45799999999996 99999999999999999998764222 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
..+..+.+|.++--. .-.+.+|+|.+ |-..+.+..++-.+++-+.
T Consensus 58 ------------------------~~~~~v~dDlf~p~~--~~y~~a~liys---irpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPNL--EIYKNAKLIYS---IRPPRDLQPFILELAKKIN 102 (134)
T ss_pred ------------------------hCCeEEECcCCCCCH--HHHhcCCEEEE---eCCCHHHHHHHHHHHHHcC
Confidence 013456677665211 12356898877 6777888888888887664
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=88.95 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+.+. .
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g---- 286 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------K---- 286 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999886 578999999999996655322210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e--c-ccCChh---------hH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C--F-FIDTAH---------NI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~--f-FlDta~---------ni-------~~yl~~I~~~ 305 (394)
. .++.+..+|..++.. ...++||.|+. | + .+..-+ ++ .+.|+.+++.
T Consensus 287 --------~-~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 287 --------L-SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred --------C-CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 126778888776531 12467999984 2 1 122111 22 4568999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-06 Score=87.05 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... +
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g---- 299 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------G---- 299 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5678999999999999999986 358999999999996655322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccC---------ChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---f---FlD---------ta~ni-------~~yl~~I~~~ 305 (394)
. .++.++.+|+.++.. +. .++||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 300 --------~-~~v~~~~~D~~~~~~-~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 300 --------L-TNIETKALDARKVHE-KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred --------C-CeEEEEeCCcccccc-hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 126788899877531 11 2689999852 1 111 11222 3579999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.30 E-value=9e-06 Score=83.98 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=72.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|.|..|+..++.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 344555544421 1456899999999999999999999999999999999766632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-h-HHHHHHHHHHhccCCcE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-N-IVEYIEIISRILKDGGV 311 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~-n-i~~yl~~I~~~LKpGG~ 311 (394)
. -.++.++.||+.++.. .+...+.||+|+ +|.+. . ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0247889999876321 111235799886 35432 1 2355565554 888876
Q ss_pred EE
Q 016155 312 WI 313 (394)
Q Consensus 312 wI 313 (394)
..
T Consensus 392 vy 393 (431)
T TIGR00479 392 VY 393 (431)
T ss_pred EE
Confidence 43
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-06 Score=82.20 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||+|.++..||.+|..|+|+|+|..|+..++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3468999999999999999999999999999999997665
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.4e-06 Score=79.22 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.+.. .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999986544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-06 Score=85.27 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999777632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-hHHHHHHHHHHhccCCcEE-EEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGVW-INLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~-ni~~yl~~I~~~LKpGG~w-IN~GPLlyh~~~~~g 327 (394)
-.++.+..+|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++. |-..|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0137889999876321 1122467999964 4331 24456666666 5776653 44444321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-|+..+ .+.||++.+..
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~ 423 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAG 423 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEE
Confidence 1234333 36799999865
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=78.35 Aligned_cols=147 Identities=21% Similarity=0.206 Sum_probs=99.9
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cC--CeEEEEeCCHHHHHHHhhhhhcccccccccccc
Q 016155 150 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYP 226 (394)
Q Consensus 150 ~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~-~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P 226 (394)
+..|++=+.+|-.... -+++.+||+.|.|.|.|+..||. .| -+|+..|+-..++..|+.-++..
T Consensus 76 QiIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---------- 142 (256)
T COG2519 76 QIIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---------- 142 (256)
T ss_pred ceecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh----------
Confidence 3455555555555443 23788999999999999999995 33 37999999999998777444321
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 016155 227 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 227 fi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~L 306 (394)
...+++.+..||+.+... .+.||+| |||.. +.-++++.++++|
T Consensus 143 ----------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~L 185 (256)
T COG2519 143 ----------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDAL 185 (256)
T ss_pred ----------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHh
Confidence 112236677799887543 3489988 56765 5789999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccC
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTY 362 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y 362 (394)
||||.++-+-|-.- -.+.+...+++.||..++ .+.+...|
T Consensus 186 kpgg~~~~y~P~ve----------------Qv~kt~~~l~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 186 KPGGVVVVYSPTVE----------------QVEKTVEALRERGFVDIEAVETLVRRW 226 (256)
T ss_pred CCCcEEEEEcCCHH----------------HHHHHHHHHHhcCccchhhheeeehee
Confidence 99999997655321 123333455566898766 34444444
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-06 Score=80.42 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=79.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+.|.+.+|.. ...+|||+|||.|-|+..||+.. -.++=+|.|+..+..|+.-+.. +.
T Consensus 147 S~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~------------- 206 (300)
T COG2813 147 SRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG------------- 206 (300)
T ss_pred HHHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC-------------
Confidence 35566666644 34599999999999999999997 4899999999999888743311 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhhHH-HHHHHHHHhccCC
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNIV-EYIEIISRILKDG 309 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF--lDta~ni~-~yl~~I~~~LKpG 309 (394)
.++..+...| +|.. ..++||+|+|+ |. .++..++. +.|+...+.||+|
T Consensus 207 ----------------------~~~~~v~~s~---~~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 207 ----------------------VENTEVWASN---LYEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred ----------------------CCccEEEEec---cccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 0111234444 3331 23599999999 65 44544433 7899999999999
Q ss_pred cEEEE--ecCcch
Q 016155 310 GVWIN--LGPLLY 320 (394)
Q Consensus 310 G~wIN--~GPLly 320 (394)
|.+-- .|.|-|
T Consensus 260 GeL~iVan~~l~y 272 (300)
T COG2813 260 GELWIVANRHLPY 272 (300)
T ss_pred CEEEEEEcCCCCh
Confidence 97632 255544
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.3e-06 Score=76.57 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~ 210 (394)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866666 58999999999986655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.23 E-value=8e-06 Score=79.32 Aligned_cols=101 Identities=26% Similarity=0.169 Sum_probs=68.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||.|..+..||.+ +-.|+|+|.|..|+..++..++.. .+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999996555332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---cc---------CChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FI---------DTAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---f---Fl---------Dta~ni-------~~yl~~I~~~ 305 (394)
.++.++.+|...+.. ..+.||+|+.- . .+ .+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125667777665421 23569998742 1 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999987
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.4e-06 Score=78.70 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=84.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|-+.. +..+||++|.++|.=+..||.. +-.++.+|.+..+...|+-.+..+
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666554 4569999999999999988864 458999999999987776544321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CC--CCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 307 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~~--~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LK 307 (394)
...+++.++.||+.++... +. ..++||+| |||.. .+-.+|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123488899999885321 00 13689988 77865 446689999999999
Q ss_pred CCcEEEEecCcchh
Q 016155 308 DGGVWINLGPLLYH 321 (394)
Q Consensus 308 pGG~wIN~GPLlyh 321 (394)
|||++| +...+|+
T Consensus 182 ~GGviv-~DNvl~~ 194 (247)
T PLN02589 182 VGGVIG-YDNTLWN 194 (247)
T ss_pred CCeEEE-EcCCCCC
Confidence 999988 3345664
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.9e-06 Score=81.71 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=84.6
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh
Q 016155 142 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 212 (394)
Q Consensus 142 S~eg~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi 212 (394)
...|.+.|+.+ -.+|...|-+.+- ++...||++|||-|.-..-.-+.|. ...|+|++..-+--++--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 34677777642 2333344444442 2566899999999999888777775 578999998766433321
Q ss_pred hhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec
Q 016155 213 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF 287 (394)
Q Consensus 213 ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e-----ly~~~~~~~~fD~VvT~f 287 (394)
.+... .+.+ ...|+ ..|++||-+. ++ ++.+.+||+|-|-|
T Consensus 160 Yrdm~------------------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~--e~~dp~fDivScQF 204 (389)
T KOG1975|consen 160 YRDMK------------------NRFK---KFIFT------------AVFIAADCFKERLMDLL--EFKDPRFDIVSCQF 204 (389)
T ss_pred HHHHH------------------hhhh---cccce------------eEEEEeccchhHHHHhc--cCCCCCcceeeeee
Confidence 11000 0000 01111 4567776542 22 22344599987666
Q ss_pred c----cCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 288 F----IDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 288 F----lDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
. ..|.+-..-.++.+.++|||||+||..-|
T Consensus 205 ~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 205 AFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 3 45666788899999999999999996444
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-06 Score=78.19 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---------G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ 239 (394)
...+|+..||++|--++-||.. + +.+.|.|+|..+|..|+-- +||--. ..+. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G-----------~Y~~~~-~~~~-~-~~ 96 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG-----------IYPERS-LRGL-P-PA 96 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT-----------EEEGGG-GTTS---HH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC-----------CCCHHH-Hhhh-H-HH
Confidence 5789999999999877766543 3 6889999999999776621 222000 0000 0 00
Q ss_pred Ccccccc-CCCC-CC--CCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 016155 240 QLRPVSI-PDIH-PA--SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 240 qlr~v~i-PDv~-p~--~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.++. -| +... .. .......+.|...|..+.+ ...+.||+|++-. |+|.. ...+.++.+++.|+|||++
T Consensus 97 ~~~r-yf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 97 YLRR-YFTERDGGGYRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHH-HEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHH-hccccCCCceeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000 00 0000 00 0012345899999988822 2358999998763 44543 3578999999999999999
Q ss_pred E
Q 016155 313 I 313 (394)
Q Consensus 313 I 313 (394)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 9
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.8e-06 Score=84.82 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||.|..+..||++. -.|+|+|.|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 47999999999996655322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEE---ec---cc---------CChhh-------HHHHHHHHHH
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF---FI---------DTAHN-------IVEYIEIISR 304 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT---~f---Fl---------Dta~n-------i~~yl~~I~~ 304 (394)
.++.++.+|+.++... +...++||+|+. |. .+ .+..+ ..+.|+.+.+
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1367788888765310 012468999984 11 01 11122 2467999999
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhC-CCEEE
Q 016155 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFE 353 (394)
Q Consensus 305 ~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~-GF~ii 353 (394)
+|||||++|-..-.++. +=+.+.+..++++. +|+++
T Consensus 373 ~lkpgG~lvystcsi~~-------------~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 373 LLKPGGTLVYATCTLHP-------------AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred hcCCCCEEEEEeCCCCh-------------hhHHHHHHHHHHhCCCcEec
Confidence 99999999821101110 11345666777665 68755
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-05 Score=73.24 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|-|.|.++.++.+.. -.++.+|++..++.+++.-+..... .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~------------~----------------- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE------------G----------------- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT------------T-----------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc------------c-----------------
Confidence 56799999999999999999886 5799999999999776633221100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCC-CccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~-~fD~VvT~fFlD--ta~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
....+++++.+|...+-. ...+ +||+|+.-.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 011348889999887543 1234 899998655432 2222 24899999999999999984
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.9e-06 Score=81.79 Aligned_cols=141 Identities=20% Similarity=0.166 Sum_probs=93.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
+..|.++...-++.. .+.+..||||=||||.+..|....|..|.|+|++..|+.-++--|++
T Consensus 180 s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~---------------- 241 (347)
T COG1041 180 SMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY---------------- 241 (347)
T ss_pred CcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------
Confidence 455666666555432 23677999999999999999999999999999999999765522211
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-cCC----h--hh-HHHHHHHH
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-IDT----A--HN-IVEYIEII 302 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F-lDt----a--~n-i~~yl~~I 302 (394)
+.+++. ..+..+|++.+. ..++++|+|+|=- | .-+ . .. ..+.|+++
T Consensus 242 ------------y~i~~~----------~~~~~~Da~~lp---l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 242 ------------YGIEDY----------PVLKVLDATNLP---LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred ------------hCcCce----------eEEEecccccCC---CCCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 111111 123333777764 3355799999862 2 111 1 12 45789999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 303 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 303 ~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+||+||+++-..|. . .. ..++..||+++..-
T Consensus 297 ~evLk~gG~~vf~~p~----~-------------~~----~~~~~~~f~v~~~~ 329 (347)
T COG1041 297 SEVLKPGGRIVFAAPR----D-------------PR----HELEELGFKVLGRF 329 (347)
T ss_pred HHHhhcCcEEEEecCC----c-------------ch----hhHhhcCceEEEEE
Confidence 9999999999854440 0 11 23457899998854
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=73.62 Aligned_cols=40 Identities=20% Similarity=-0.057 Sum_probs=35.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~ 210 (394)
.+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 356899999999999999999997 7999999999986554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-05 Score=77.58 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25678999999999999999999999999999999986543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-05 Score=72.94 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+...+.+.+.. +++.+||++|||+|..+.-||+++-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887666533321
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN- 314 (394)
. . -.|+.+.+||-..=+. ....||.|+..--.++.+ +.+...|||||++|-
T Consensus 117 --------l----------g-~~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------L----------G-YENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------c----------C-CCceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 0 1 1237889999765443 358899886443333332 345678999999996
Q ss_pred ec
Q 016155 315 LG 316 (394)
Q Consensus 315 ~G 316 (394)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 45
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=78.20 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+-+.... .++.+||++|||+|.|+..|+.++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44444444332 25679999999999999999999999999999999996555221100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 292 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta 292 (394)
....++.++.+|++++.. ..||+||.+ |+|.+.
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istp 116 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSP 116 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcH
Confidence 001247899999988642 468998876 566664
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=81.22 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~f 211 (394)
++.+|||+|||.|..+..+|++ +-.|+|+|+|..|+..++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999976653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-06 Score=88.81 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=90.2
Q ss_pred HHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~-~~VLvpGCGlGRLa~eLA~~Gf~v~G~---D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
-++.|.+.+|....... ..+||+|||+|.++..|..+|.-+..+ |-....+ +|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qv---qfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQV---QFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhh---hhhhh-----------------
Confidence 56677777775211123 467999999999999999999654322 1111111 11111
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-cCChhhHHHHHHHHHHhccCCc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF-lDta~ni~~yl~~I~~~LKpGG 310 (394)
|+ +|.+- . +.|. ..+|+.++.||+|=+.-. +.=..+---||-+|.|+|+|||
T Consensus 161 ----------RG--vpa~~----------~-~~~s----~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RG--VPAMI----------G-VLGS----QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cC--cchhh----------h-hhcc----ccccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 12 12110 0 1112 123556899999976644 3222222358999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+||--||..|.-.+ ...+-.+++|..+.+++-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99998988871111 1223467888899999999888755
|
; GO: 0008168 methyltransferase activity |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=75.80 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred hcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhc
Q 016155 139 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 139 RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~ 215 (394)
.+|..-=...-+..|++=+..|-..+.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3566544444567888878887776643 37899999999999999999975 2 2899999999998766522211
Q ss_pred cccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhH
Q 016155 216 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 295 (394)
Q Consensus 216 ~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni 295 (394)
+ ...+++.+..+|..+--......+.+|+| |||.. +.
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav----fLDlp-~P 124 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFDEELESDFDAV----FLDLP-DP 124 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--STT-TTSEEEE----EEESS-SG
T ss_pred ------c--------------------------------CCCCCceeEecceecccccccccCcccEE----EEeCC-CH
Confidence 0 11235788888875421111123678887 67764 46
Q ss_pred HHHHHHHHHhc-cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccCC
Q 016155 296 VEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYT 363 (394)
Q Consensus 296 ~~yl~~I~~~L-KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y~ 363 (394)
-++|..+.++| ||||++..+-|-.- -...+.+.|++.||..++ .+.+...|.
T Consensus 125 w~~i~~~~~~L~~~gG~i~~fsP~ie----------------Qv~~~~~~L~~~gf~~i~~~Evl~R~~~ 178 (247)
T PF08704_consen 125 WEAIPHAKRALKKPGGRICCFSPCIE----------------QVQKTVEALREHGFTDIETVEVLLREWE 178 (247)
T ss_dssp GGGHHHHHHHE-EEEEEEEEEESSHH----------------HHHHHHHHHHHTTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCHH----------------HHHHHHHHHHHCCCeeeEEEEEEeeEEE
Confidence 68999999999 99999998766421 123344556678998876 333333443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=74.93 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=66.7
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..-+|++|||.|+...++|++ +..+.|+|.+..-+..+. +.+.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~------------------------------ 64 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR------------------------------ 64 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH------------------------------
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh------------------------------
Confidence 348999999999999999998 688999999998774332 111110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh---HHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN---IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt------a~n---i~~yl~~I~~~LKpGG~wI 313 (394)
.-.|+.++.+|+..+...-..++++|.|.-.| =|. ... =.++++.++++|||||.+-
T Consensus 65 ------~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 65 ------GLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ------TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred ------cccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 01358889999877322112357888886655 221 111 1268999999999999875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=79.47 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+.|||+|||||-|+..-|+.|. .|.|+|.|.-+ ..++-+.+. +.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999997 69999999866 444433321 111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+-+.++.|...++. +| .++.|+||+-+ ||=-..=+..+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi~-LP--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIE-LP--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEe-cC--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 112677888888874 34 58899999874 33222113344555568999999986
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=76.85 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHhhhhhcccccccccccc----------cccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP----------WIHS 230 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P----------fi~~ 230 (394)
...+|+..||.+|--++-||.. .+.+.|.|+|..+|..|+- .+|| |...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999987777654 3689999999999976652 2233 0000
Q ss_pred ccCCC-CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 231 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 231 ~sn~~-~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
+=... ...+ ..+.+ .+ .....+.|...|..+... | ..+.||+|++.. |++. +...+.++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00011 00 123458899988876211 1 247899999742 4444 45778999999999
Q ss_pred cCCcEEE
Q 016155 307 KDGGVWI 313 (394)
Q Consensus 307 KpGG~wI 313 (394)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999877
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.2e-05 Score=71.40 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~ 207 (394)
++..|||+|||+|.++..|+++|. .|+|+|+|..||.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 567899999999999999999986 6999999999885
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=71.83 Aligned_cols=247 Identities=14% Similarity=0.108 Sum_probs=139.5
Q ss_pred ccCcccccccCCcccCCCCCCCccccchHHHhhhh-----cccccccCCCCCCCCCCCCCCcCCCCCCcchHHHH--HHH
Q 016155 62 MTTNEEEETEGPIEYKTASCPGKLENREETNQSCS-----NDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVR--CII 134 (394)
Q Consensus 62 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kv~--~~L 134 (394)
|.|-+|-++....-...+....+..+-+.-++.++ ..++.+.|..|.+.-||.=-.- .+- ..-+.|+. .=|
T Consensus 27 g~s~~e~~~L~~pl~~~s~~~l~~~~~r~~m~~~g~lS~Gi~lG~~tGFDSGstLDYVYrN~-p~G-~~~~GrliDr~yL 104 (311)
T PF12147_consen 27 GFSRDEAERLATPLPPNSPKGLYWRFQRASMRTGGRLSEGIRLGLETGFDSGSTLDYVYRNQ-PQG-KGPLGRLIDRNYL 104 (311)
T ss_pred CCCHHHHHHhcCCCCCCCHHHhHHHHHHHHHHhccccccceeechhcCCCCcchHhHHhcCC-CCC-cchHHHHHHHhhh
Confidence 44555555554443333444455555565555554 4566788888777767654331 000 11112211 011
Q ss_pred HHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHh
Q 016155 135 RNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSS 210 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G----f~v~G~D~S~~ML~~s~ 210 (394)
..+- | .|-..|+.....+|..--..+... ..+.+|||+.||.||..++..... -.|.-+|+|..-+...+
T Consensus 105 naiG--W--rGIR~Rk~~l~~~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 105 NAIG--W--RGIRQRKVHLEELIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred cccc--h--HHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 1111 3 466677664333333222222211 267899999999999999986653 35789999998887766
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-c--
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-F-- 287 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-f-- 287 (394)
-++..- . ..+-++|..+|.++......-.-..++++.+ .
T Consensus 179 ~li~~~--------------------------g------------L~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 179 ALIAER--------------------------G------------LEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE 220 (311)
T ss_pred HHHHHc--------------------------C------------CccceEEEecCCCCHhHhhccCCCCCEEEEecchh
Confidence 554210 0 1112488899987742211122345665544 2
Q ss_pred -ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-----cC--CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 288 -FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL-----YG--QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 288 -FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~-----~g--~~~~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|-|. .-+..-|.-++.+|.|||++|--| --||-... .. .....++ .-|..|+.+|++++||+-+...
T Consensus 221 lF~Dn-~lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 221 LFPDN-DLVRRSLAGLARALEPGGYLIYTG-QPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred hCCcH-HHHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 4343 336678999999999999999543 22443221 00 0001122 3499999999999999855543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-05 Score=77.99 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|.++.++|.+|..|+|+|.|..++..++.-+.. +
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~------------------------------- 278 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L------------------------------- 278 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c-------------------------------
Confidence 45899999999999999999999999999999999776622210 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 328 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~ 328 (394)
.. .++.+..+|+.++.. ...++||+|+. |.+.. ..+.++.|.+ ++|+++..- ..|-.
T Consensus 279 ---~~-~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 279 ---GL-DNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred ---CC-CcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 00 137889999876432 11246998864 44322 2244555543 788776542 23321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
=..|+..+ .||++.+..
T Consensus 339 --------laRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred --------HHHHHHHh---cCceEEEEE
Confidence 13455555 599999865
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-05 Score=72.46 Aligned_cols=99 Identities=25% Similarity=0.310 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
+..+||++|.++|.=+..+|.. | .++.+|+...|...|+-.+..+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag----------------------------- 108 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAG----------------------------- 108 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Confidence 5679999999999999888765 4 79999999999987775543321
Q ss_pred CCCCCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 016155 247 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~-GDf~ely~~~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.+.++. ||.+++... ...++||+| |||.+ .+-.+|++.+.++|+|||+.|
T Consensus 109 ---------~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 109 ---------VDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred ---------CcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 112356677 688886541 235899998 78876 445689999999999999999
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-05 Score=76.99 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|+|.|.++.++.+.. -.|+.+|++..++..++--+ |+.+ +.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~~-------------- 153 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---EA-------------- 153 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---cc--------------
Confidence 45689999999999999998853 46999999999997665221 1100 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 317 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-----a~ni--~~yl~-~I~~~LKpGG~wI-N~GP 317 (394)
-...++.++.+|.+..-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ |.++
T Consensus 154 ------~~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 154 ------FCDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ------ccCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 001347889999887533 24578999986533 21 1111 36787 8999999999997 4444
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-05 Score=71.15 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-----------SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-----------v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ 239 (394)
++..||||=||+|.+..|-|..+.. +.|.|++..|+..|+-.+..+.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---------------------- 85 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---------------------- 85 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----------------------
Confidence 5678999999999999999988765 4599999999987774432210
Q ss_pred CccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHH----HHHHHHHHhccCCcE
Q 016155 240 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIV----EYIEIISRILKDGGV 311 (394)
Q Consensus 240 qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f--FlDta~ni~----~yl~~I~~~LKpGG~ 311 (394)
....+.+..+||.++.. ..+.+|+|||. | -+.+..++. ++++.+.++|++..+
T Consensus 86 ----------------~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 86 ----------------VEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp -----------------CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ----------------cCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 11237889999999862 35799999999 3 233333233 357888899999666
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||-.+ ..++.+++...+++..+..
T Consensus 147 ~l~~~---------------------~~~~~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 147 FLTTS---------------------NRELEKALGLKGWRKRKLY 170 (179)
T ss_dssp EEEES---------------------CCCHHHHHTSTTSEEEEEE
T ss_pred EEEEC---------------------CHHHHHHhcchhhceEEEE
Confidence 65311 1233455666677777655
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=70.30 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+..... ++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 555555544322 5679999999999999999999999999999999986544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=57.46 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 175 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 175 VLvpGCGlGRLa--~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
||++|||+|+.. ..+...+..++|+|++..|+..++..... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-------------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A-------------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-------------------------CC--------
Confidence 999999999954 44444456899999999998652211000 0 00
Q ss_pred CCCCCCceeEEeccccc-ccCCCCCC-CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 253 SAGITEGFSMCGGDFVE-VYSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~e-ly~~~~~~-~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..+.+..+|... ... ... ..||++.....+.... ....+..+.++|||||.++..
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 003455566554 122 223 4799983332222222 678999999999999999853
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=69.78 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|+|.|.++..|+++ +-+++..|+ +.++..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4568999999999999999988 577888888 54542111 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC--cEEEEecCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINLGPL 318 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpG--G~wIN~GPL 318 (394)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |++|-+.++
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 134899999998532 2 3 99998776653 5566889999999999999 999865443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00038 Score=69.99 Aligned_cols=141 Identities=9% Similarity=-0.015 Sum_probs=79.2
Q ss_pred HHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEe
Q 016155 129 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNE 200 (394)
Q Consensus 129 kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eL------A~~Gf~v~G~D 200 (394)
+=.....++++ +|- .-+.|.+ .+..-...|.+.++ ++..|+++|||.||-+.-| +..+..-.++|
T Consensus 39 ~Gs~LFe~It~lpEYY-ptr~E~~-iL~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plD 111 (319)
T TIGR03439 39 EGLKLFEEITYSPEYY-LTNDEIE-ILKKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALD 111 (319)
T ss_pred hHHHHHHHHHcCCccC-ChHHHHH-HHHHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEE
Confidence 34445666664 222 1233332 33444455555665 4458999999999984432 22356788999
Q ss_pred CCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC--CC
Q 016155 201 FSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QV 277 (394)
Q Consensus 201 ~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~--~~ 277 (394)
+|..+|..+.--+ ++-.+|.+. +.-+.|||.+... .+. ..
T Consensus 112 IS~~~L~~a~~~L----------------------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 112 VSRSELQRTLAEL----------------------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCHHHHHHHHHhh----------------------------hhccCCCeE---------EEEEEecHHHHHhhccccccc
Confidence 9999996443211 111223321 3447788866321 111 12
Q ss_pred CCccEEEEe---cccCChhhHHHHHHHHHH-hccCCcEEE
Q 016155 278 GAWDAVVTC---FFIDTAHNIVEYIEIISR-ILKDGGVWI 313 (394)
Q Consensus 278 ~~fD~VvT~---fFlDta~ni~~yl~~I~~-~LKpGG~wI 313 (394)
....+|+-. +-=-+.+....+|+.|++ .|+|||.++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 334444421 111133457789999999 999999887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=70.78 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+||++|-|-|..++|+.+.--+|+-+|+...++.+++-- +|.++. . .+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~------------lP~~~~---~--~~------------ 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF------------FPHFHE---V--KN------------ 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH------------CHHHHH---h--hc------------
Confidence 678999999999999999999866999999999999766621 232221 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++. .+.+ ...++||+|+.=- .. -.++++.++++|+|||+++.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 11244443 1221 1237899998531 11 14788999999999999997
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=71.52 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=71.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHhhh--hhcccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFI--LNHTETAGEWNI 224 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~---------~Gf~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i 224 (394)
|.+.+.+.+... ++.+||||+||+|.+..++.+ ....+.|+|++..++..+..- +....
T Consensus 34 i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~------- 103 (311)
T PF02384_consen 34 IVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID------- 103 (311)
T ss_dssp HHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-------
T ss_pred HHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-------
Confidence 556666655432 566899999999999888776 467899999999998666522 11100
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC------------
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------ 290 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD------------ 290 (394)
..++.+..+|.+.-... .....||+|+++ |-..
T Consensus 104 --------------------------------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~ 150 (311)
T PF02384_consen 104 --------------------------------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDER 150 (311)
T ss_dssp --------------------------------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred --------------------------------ccccccccccccccccc-ccccccccccCCCCcccccccccccccccc
Confidence 01134566676543221 114678988877 2111
Q ss_pred -------ChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 291 -------TAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 291 -------ta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
....-..++..+.+.||+||+.+-+-|-
T Consensus 151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 1111235889999999999998765553
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00027 Score=69.91 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+||++|-|.|..++++.+.. -+++.+|+...++..|+.-+-.. ++. .+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~---------------~~~------------~~- 128 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP---------------SGG------------AD- 128 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc---------------ccc------------cC-
Confidence 3599999999999999999998 68999999999997776332110 000 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|-.++-. ...++||+|+.--+ .-.++++ .++++.++++|||+|+++.
T Consensus 129 -------dpRv~i~i~Dg~~~v~--~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 129 -------DPRVEIIIDDGVEFLR--DCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred -------CCceEEEeccHHHHHH--hCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 1347788888887543 22358999985433 2233443 4799999999999999995
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00064 Score=68.42 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
.+.+|||+|||+|-++..|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 779999999999998887543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=78.02 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--------------------------------------------f~v~G~D~S~~ML 206 (394)
++..++||+||.|.++.|.|..+ ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 45789999999999999988741 2589999999999
Q ss_pred HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 016155 207 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 286 (394)
Q Consensus 207 ~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~ 286 (394)
..|+--+..+ ...+.+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 8777332210 112237889999988743 2223679999999
Q ss_pred --cc--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 016155 287 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 313 (394)
Q Consensus 287 --fF--lDta~ni~~yl~~I~~~LK---pGG~wI 313 (394)
|. +....++.+..+.+-..|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 54 3344555565555555555 776664
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=68.10 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHhhhhhcccccccccccc-ccccccCCCCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP-WIHSNCNSLSDS 238 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-----------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P-fi~~~sn~~~~~ 238 (394)
...+|..+||++|.-++-||.. .+.+.|.|+|..+|..|+ .-+|| -.. ..+ -.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~-~~~---~~ 160 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSREL-LRG---LP 160 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHh-hcc---CC
Confidence 4789999999999877766643 367889999999996555 23444 110 000 00
Q ss_pred cCcccc---ccCCC-CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcE
Q 016155 239 DQLRPV---SIPDI-HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 239 ~qlr~v---~iPDv-~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
.+++.- ..+|- -.-+......+.|-..|..+-.. ..+.||+|++-- |+|.. --.+.++.++..|||||+
T Consensus 161 ~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 161 PELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGL 236 (268)
T ss_pred HHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCE
Confidence 000000 00000 00000123457888888765331 357899999763 45543 245789999999999999
Q ss_pred EE
Q 016155 312 WI 313 (394)
Q Consensus 312 wI 313 (394)
++
T Consensus 237 Lf 238 (268)
T COG1352 237 LF 238 (268)
T ss_pred EE
Confidence 98
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=74.30 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+..++|+.|||.|....+++.-+ -.++|++.+.+-+...+-.. ..+ +++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~---~~~-------~l~-------------------- 159 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA---KKA-------YLD-------------------- 159 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH---HHH-------Hhh--------------------
Confidence 44589999999999999999986 67999999987764333111 000 011
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---------Ccch
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---------PLLY 320 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---------PLly 320 (394)
+.-.++.+||..- |+.+++||.|-+.--.-.+++....+++|+++|||||+||..- +--+
T Consensus 160 --------~k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 160 --------NKCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred --------hhcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 1122355666553 4567999998766555567888899999999999999999621 1111
Q ss_pred hhhhcc--CCCCCccccCCHHHHHHHHHhCCCEEEE-Eee
Q 016155 321 HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEK-EKT 357 (394)
Q Consensus 321 h~~~~~--g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~ 357 (394)
|..-.. +..+....+....++..+++..||..+. ++.
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~d 268 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKD 268 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhhhccc
Confidence 111000 0011123456888899999999998887 443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=66.84 Aligned_cols=124 Identities=21% Similarity=0.200 Sum_probs=82.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf 227 (394)
.|..+++.|..++- ++-+.|++|+|+|.|+.-+|.+ |-.+.|+|.=...+..|..-++.-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 46678888887653 6779999999999998888854 556689999888887665433211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 228 i~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
++-|+. .. .-....++++.||-+..+. ...+||+|..- ....+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG------Aaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG------AAASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc------cCccccHHHHHHhhc
Confidence 011111 00 0112348999999998875 36889998653 123345666677889
Q ss_pred CCcEEEE-ecCc
Q 016155 308 DGGVWIN-LGPL 318 (394)
Q Consensus 308 pGG~wIN-~GPL 318 (394)
|||.+|- .||-
T Consensus 185 ~gGrllip~~~~ 196 (237)
T KOG1661|consen 185 PGGRLLIPVGQD 196 (237)
T ss_pred cCCeEEEeeccc
Confidence 9888874 5553
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00037 Score=66.95 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...+|++|||.|+...++|++- ....|+|....-+..+ ++.+.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 4689999999999999999995 5678999987666422 2222110 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt----a~--n-i--~~yl~~I~~~LKpGG~wI 313 (394)
.|+.++.+|..++...-..+++.|-|.-+| -|. -+ . + ..+++.+.++|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 158889999887643212356889886655 231 11 1 1 168999999999999985
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00059 Score=72.40 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G----------f~v~G~D~S~~ML~~s~fil 213 (394)
...+|||||||+|.+...++.+. -.+.|+|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45699999999999988887643 35789999999987766544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=60.91 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
.+.-||++|.|||-++..|-.+|. .++++|.|.+.... ||. .+|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LYP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hCC
Confidence 677999999999999999999996 68999999988632 221 122
Q ss_pred CCCCCCCCCCCceeEEeccccccc--CCCCCCCCccEEEEec-ccCCh-hhHHHHHHHHHHhccCCcEEEE--ecCc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-FIDTA-HNIVEYIEIISRILKDGGVWIN--LGPL 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely--~~~~~~~~fD~VvT~f-FlDta-~ni~~yl~~I~~~LKpGG~wIN--~GPL 318 (394)
+ ..++.||..++. ..+.....||+|+++. ++.-. .--+++|+.....|.+||.+|. +||+
T Consensus 95 ~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 G-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2 245677776654 2234467799999996 33322 2255899999999999999996 4654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=69.77 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~ 210 (394)
+++++.+.+... ++..+||.+||+|..+..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 444555544322 56799999999999999999884 68999999999997665
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00048 Score=64.91 Aligned_cols=120 Identities=20% Similarity=0.289 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFS 202 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S 202 (394)
.|+.||- ||.-=..||+. |.+. +. ++..|||+-||.|.++.-+|+ ++-.|.++|+.
T Consensus 77 ~D~~kvy---------fs~rl~~Er~R----i~~~----v~-----~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N 134 (200)
T PF02475_consen 77 VDLSKVY---------FSPRLSTERRR----IANL----VK-----PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN 134 (200)
T ss_dssp EETTTS------------GGGHHHHHH----HHTC-----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-
T ss_pred EccceEE---------EccccHHHHHH----HHhc----CC-----cceEEEEccCCccHHHHHHhhhcCccEEEEecCC
Confidence 5666655 88766678863 3332 21 567999999999999999999 78889999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccE
Q 016155 203 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDA 282 (394)
Q Consensus 203 ~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~ 282 (394)
+..+...+ ..+ +.+ ...+.+..+.||..++.. .+.||-
T Consensus 135 p~a~~~L~---~Ni-~lN----------------------------------kv~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 135 PDAVEYLK---ENI-RLN----------------------------------KVENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp HHHHHHHH---HHH-HHT----------------------------------T-TTTEEEEES-GGG-------TT-EEE
T ss_pred HHHHHHHH---HHH-HHc----------------------------------CCCCeEEEEcCCHHHhcC----ccccCE
Confidence 87764322 111 000 011337788999988743 578997
Q ss_pred EEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 283 VVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 283 VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
|+-.. .+.-.+|+.....++|+||+.
T Consensus 173 vim~l----p~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNL----PESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE------TSSGGGGHHHHHHHEEEEEEE
T ss_pred EEECC----hHHHHHHHHHHHHHhcCCcEE
Confidence 76543 222337888899999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00095 Score=65.34 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999974322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 292 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta 292 (394)
....++.++.||++.+... .. ..++.||++ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~~-~l-~~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDFP-SL-AQPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcch-hh-cCCCEEEEcCCCcccHH
Confidence 0124589999999987541 10 167888877 677764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=69.58 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 147 TERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 147 ~ER~~~y~pIl~~L~~~~p~~~~~~~-~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
-||-..|.-+-..|..+.. .. -++|.+|||.-+|..++-+-|| .++-+|+|..-+.+.. .-.+ +
T Consensus 28 ~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~- 93 (482)
T KOG2352|consen 28 FEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------K- 93 (482)
T ss_pred HHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------c-
Confidence 3443334444444544432 23 3899999999999999999999 5899999997664322 1000 0
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-----cccC--Ch---hh
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFID--TA---HN 294 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-----fFlD--ta---~n 294 (394)
....+.|...|+..++. .+++||+|+-- +|-| +. .-
T Consensus 94 -------------------------------~~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~ 139 (482)
T KOG2352|consen 94 -------------------------------ERPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAH 139 (482)
T ss_pred -------------------------------CCcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHH
Confidence 01237888889888764 57999999832 2322 11 13
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q 016155 295 IVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 295 i~~yl~~I~~~LKpGG~wIN~ 315 (394)
+..++..|+++|+|||++|++
T Consensus 140 v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 140 VSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred hhHHHhhHHHHhccCCEEEEE
Confidence 557899999999999999973
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00064 Score=62.08 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=57.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||+|-.+..+|++ +-.|+..|... -+-..+..+.. +.. .
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------~------------ 94 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------L------------ 94 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc-------------c------------
Confidence 6789999999999999999999 67899999998 44322211110 000 0
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~e-ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...++++...|..+ +.......+.||+|+.+=.+=..+.....+++|.++|+|+|.++
T Consensus 95 -------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 95 -------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred -------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 00112223322211 10000124689999976222123456788999999999988855
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00094 Score=68.68 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||++||+|-++..+|.. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998765532211 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+..+..+|+.++.. . .+.||+|+. |..-....+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 114577888766532 1 357998865 332224578888778899999886
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00086 Score=60.83 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 204 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ 204 (394)
+..+|||+||+.|..+..+..++ ..|.|+|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999999 78999999873
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0037 Score=63.31 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=91.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
...+|.|.|+||++..|...--+|.|++|...-++.+. .++ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 46789999999999999995556999999987765322 000 0 1
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 328 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~-- 328 (394)
++..+.|||+.- - | +=|+|+..+.|. |-++..++|+++++.|+|||..|-...++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~-~-P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD-T-P----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc-C-C----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 245688998764 2 2 225999998775 4567999999999999999999954443322 111110
Q ss_pred -------------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 -------------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 -------------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
......+.+..|...++.+.||....-.
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEE
Confidence 0012456688888888888888766533
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=65.63 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.-|||+|||.|-|++.-|+.|. .|.++|-|. |..-|+.+... |
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----------------N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS-----------------N---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc-----------------C----------------
Confidence 677899999999999999999996 699999986 65555544321 1
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++..+-|-..++.. .++.|++++- +.|-...=+..|+..= +.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 112347777788877754 3789999975 3343433355566544 9999999875
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0037 Score=61.36 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~ 215 (394)
.++.+|....|+. .+.+|||.|||.|.-++.+... -..++++|-|..|+..++.++..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4888898888764 5679999999999877666543 35789999999999999988753
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00062 Score=62.34 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
.|||+.||.|..+..||+.+-.|.|+|++...+..++.- ..+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hN---------a~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHN---------AEVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHH---------HHHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHH---------HHHc----------------------------
Confidence 699999999999999999999999999999999776622 1222
Q ss_pred CCCCCceeEEecccccccCCCCCCCC-ccEEE
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGA-WDAVV 284 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~-fD~Vv 284 (394)
...+++.++.|||.++... ..... ||+|+
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~vF 74 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKR-LKSNKIFDVVF 74 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGG-B------SEEE
T ss_pred -CCCCcEEEEeCCHHHHHhh-ccccccccEEE
Confidence 1124589999999987531 11122 79986
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=61.46 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+....+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++...+. ...+ ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5668999999999998877644 776 999999998776666444321110 0000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
...+.+..|||++.-.....-..-|+|+.+-++= .+.+...|..+..-||||-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1237788999986321000002347877553321 223667788899999999999975444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0025 Score=67.84 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..+|++|||.|....++|.+- ..+.|+|.+..-+..+ ++.+.+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~---~~~~~~~~---------------------------- 395 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANV---LKLAGEQN---------------------------- 395 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHH---HHHHHHcC----------------------------
Confidence 57899999999999999999995 6789999998755322 22111100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt------a~n-i--~~yl~~I~~~LKpGG~wI 313 (394)
-.|+.++.+|+..+.. -..++++|.|.-+| =|. .+. + .++++.++++|||||.+-
T Consensus 396 --------l~N~~~~~~~~~~~~~-~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 396 --------ITNFLLFPNNLDLILN-DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred --------CCeEEEEcCCHHHHHH-hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1235566667643321 12357788886665 221 111 1 268999999999999875
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=59.71 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+|||+=||+|.++.|...+|. .|+.+|.+...+...+.-++...
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-------------------------------- 89 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-------------------------------- 89 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------
Confidence 467999999999999999999996 79999999987754432222110
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCChhh----HHHHHHHHH--HhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTAHN----IVEYIEIIS--RILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~fFlDta~n----i~~yl~~I~--~~LKpGG~wI 313 (394)
..+....+.+|+...... ......||+| |+|.+-. +.+.++.+. .+|+++|++|
T Consensus 90 ------~~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 90 ------LEDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred ------CCcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEE
Confidence 011256677786554311 0125789998 5565411 355677776 7899999988
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.011 Score=52.02 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~------~Gf~v~G~D~S~~ML~~s~f 211 (394)
+...|+|+|||.|.|++.||. .+..|.|+|.+..++..++.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 677999999999999999999 58899999999998865553
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=63.98 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+.+|||+-||+|-++.+++.+ | -.|++||++...+...+.-++. + .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~----- 93 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------S----- 93 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------C-----
Confidence 468999999999999999998 5 4799999999988544321110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.+..+|+..+... ..+.||+|. ||.-.....|++.+.+.+++||++.
T Consensus 94 --------~~~~~v~~~Da~~~l~~--~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 94 --------VENIEVPNEDAANVLRY--RNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred --------CCcEEEEchhHHHHHHH--hCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 01256777887765431 135799884 4553334589999999999999887
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0054 Score=63.44 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh--hhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+||++=|=||..+...|..|. .||++|.|-..|-.|+.- ||.. .
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~----------------------------~-- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGL----------------------------D-- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCC----------------------------C--
Confidence 478999999999999999999999 999999999998655421 2210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-CCCCCccEEEEe--cccC-------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFID-------TAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~-~~~~~fD~VvT~--fFlD-------ta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
.....++.+|..++.... ....+||+|+.= -|.- -..+..+.+....++|+|||+++-..-
T Consensus 267 ---------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 267 ---------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ---------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 123678999988864311 123589999842 1221 123344556667789999999984210
Q ss_pred cchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 318 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 318 Llyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
..+ .+.++-.+.|.+.+...|.....
T Consensus 338 -~~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 338 -SRH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred -CCc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 000 12234455566666666665544
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0033 Score=62.43 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhh--hhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSF--ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~f--iln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+||++=|=||.++...|..|. .|+++|.|..+|..++- .+|.. .
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~----------------------------~-- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGL----------------------------D-- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-----------------------------C--
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------C--
Confidence 466999999999999999898896 69999999999965542 22210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC----hhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----AHNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt----a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
.....++.+|..+....-...++||+||.= -|.-. ..+..+.+....++|+|||+++-.
T Consensus 173 ---------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~------ 237 (286)
T PF10672_consen 173 ---------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC------ 237 (286)
T ss_dssp ---------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE------
T ss_pred ---------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE------
Confidence 123788899987743210124689999832 12221 234455678888999999998731
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCC--CEEEEEeeccccC
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKEKTIETTY 362 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~G--F~ii~e~~i~~~Y 362 (394)
.. +-.++.+++.+++...+ +++++.-..+..|
T Consensus 238 -sc--------s~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df 271 (286)
T PF10672_consen 238 -SC--------SHHISPDFLLEAVAEAAREVEFIERLGQPPDF 271 (286)
T ss_dssp -E----------TTS-HHHHHHHHHHHHHHCEEEEEEE-----
T ss_pred -cC--------CcccCHHHHHHHHHHhCccceEeeeecccccc
Confidence 11 23456666666555433 4555433334444
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=59.50 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+||++|..++.|+++|..|+|+|.+. |- ..+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999554 31 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG 309 (394)
...++....+|-..... ..+.+|.||+ |......+..+-|.++|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p---~~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP---PRKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC---CCCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01235556666555322 1467899876 66666777888888888776
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=58.28 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+++.|-+.-+ .++...||++|-|||.|+..|-.+|-.|.|+|+...|+.
T Consensus 46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmva 94 (315)
T KOG0820|consen 46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVA 94 (315)
T ss_pred HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHH
Confidence 5555544332 347789999999999999999999999999999999984
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0086 Score=62.67 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+=||.|.++..||++...|.|+|++..++.+|.+.... +
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----N------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----c------------------------------
Confidence 567899999999999999999999999999999999988854321 1
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh-hHH-HHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NIV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~-ni~-~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..+|+.|..||..++.........+|+|+ +|.+. -+. +.++.|.+.-.+.=+.|...|...
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 01247889999887653211234678884 57542 233 677777775444433343333211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..|+. ++...|+++.+..
T Consensus 402 ---------aRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHH-HHHhCCeEEEEEE
Confidence 23444 4557788887755
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0069 Score=61.54 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=34.9
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999997766
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.019 Score=60.67 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=33.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~ 210 (394)
++.+|||.+||-|.=+..||.+- -.+++||+|...+...+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~ 155 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH 155 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 67899999999999999998861 27999999999885444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=55.45 Aligned_cols=123 Identities=24% Similarity=0.196 Sum_probs=68.4
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~fil 213 (394)
-+|-|... |. .+-..|..-+.+..-.++.+||-+|+.+|..+-.++.- .=.|.|+|||.-+. +-++
T Consensus 47 eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~---rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM---RDLL 115 (229)
T ss_dssp EEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH---HHHH
T ss_pred ceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH---HHHH
Confidence 47888864 22 35555554443333346789999999999998777665 33799999999664 2333
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCC
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el--y~~~~~~~~fD~VvT~fFlDt 291 (394)
+-+++. -.|.| +.+|.+.- |. .--+..|+| |.|.
T Consensus 116 ~la~~R--~NIiP------------------------------------Il~DAr~P~~Y~--~lv~~VDvI----~~DV 151 (229)
T PF01269_consen 116 NLAKKR--PNIIP------------------------------------ILEDARHPEKYR--MLVEMVDVI----FQDV 151 (229)
T ss_dssp HHHHHS--TTEEE------------------------------------EES-TTSGGGGT--TTS--EEEE----EEE-
T ss_pred HHhccC--Cceee------------------------------------eeccCCChHHhh--cccccccEE----EecC
Confidence 433322 12223 33454421 21 112356666 4465
Q ss_pred h--hhHHHHHHHHHHhccCCcEEEE
Q 016155 292 A--HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 292 a--~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+ ....-.+......||+||.++-
T Consensus 152 aQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 152 AQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CChHHHHHHHHHHHhhccCCcEEEE
Confidence 4 2244467777789999999984
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.001 Score=63.36 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=88.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+.++||+|+|-|-.+..++-.--+|.+.|+|..|.. +-+++ .+ .+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~-------rL~kk-~y----------------------nV--- 157 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRD-------RLKKK-NY----------------------NV--- 157 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHH-------HHhhc-CC----------------------ce---
Confidence 35689999999999999888877668999999999963 11111 00 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC-CcEEEE--ecCcchhhhh-c
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWIN--LGPLLYHFAD-L 325 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp-GG~wIN--~GPLlyh~~~-~ 325 (394)
+ . ..|... .+=+||+|.+.-.||..-+....++.|+.+|.| .|..|- +=|. -||-. .
T Consensus 158 ----------l--~---~~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~-~hYVE~N 218 (288)
T KOG3987|consen 158 ----------L--T---EIEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHYVETN 218 (288)
T ss_pred ----------e--e---ehhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc-cceeecC
Confidence 0 0 112211 134689886667899998999999999999999 888874 2232 23322 1
Q ss_pred cCCCCCcc---c---cCCHHH----HHHHHHhCCCEEEEEeeccccCCC
Q 016155 326 YGQEDEMS---I---ELSLED----VKRVALHYGFEFEKEKTIETTYTT 364 (394)
Q Consensus 326 ~g~~~~~~---i---eLS~eE----l~~ll~~~GF~ii~e~~i~~~Y~~ 364 (394)
.++.+... + .-++|| +.+++++.||.++. +...+|+-
T Consensus 219 ~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea--wTrlPYLC 265 (288)
T KOG3987|consen 219 TSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA--WTRLPYLC 265 (288)
T ss_pred CCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh--hhcCCeec
Confidence 12211111 0 114443 45778899998765 22345643
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.049 Score=52.60 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred hhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhh
Q 016155 138 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 138 ~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn 214 (394)
..-|--.+..|.-+ +++-|-+.+ +..++|++|-=||.=+..+|.. +-.|+++|+...-.....-+..
T Consensus 50 ~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k 119 (237)
T KOG1663|consen 50 QPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK 119 (237)
T ss_pred CcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH
Confidence 35576676666654 566665554 5679999997777665555554 6789999998877654432221
Q ss_pred ccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---CCCCCCCccEEEEecccCC
Q 016155 215 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 215 ~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~---~~~~~~~fD~VvT~fFlDt 291 (394)
.+ .....+++++|+..+.-. ..-+.++||.| |+|.
T Consensus 120 ~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa----FvDa 157 (237)
T KOG1663|consen 120 LA--------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA----FVDA 157 (237)
T ss_pred hc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE----EEcc
Confidence 11 112236777777765321 01246889988 6775
Q ss_pred h-hhHHHHHHHHHHhccCCcEEE
Q 016155 292 A-HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 292 a-~ni~~yl~~I~~~LKpGG~wI 313 (394)
- .|=..|++..-++||+||+++
T Consensus 158 dK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 158 DKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred chHHHHHHHHHHHhhcccccEEE
Confidence 4 344489999999999999998
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.01 Score=57.83 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
.+|||.=+|+|+.++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998875444333
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.01 Score=60.51 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=34.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
.+|||++||+|.++..||+....|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 46999999999999999998888999999999997666
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0075 Score=54.75 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~ 210 (394)
.+..+.+-+.+. .+.+++|+|||+|-|....+..+-. |.|+|+....|...+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 444455545433 6789999999999999888887764 789999999997655
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.067 Score=54.48 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=97.2
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHh--hhhhccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS--FILNHTE 217 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~--filn~~~ 217 (394)
||.--..||.. +.+... .+..|||+=||.|.++..+|+.|-. |.++|+.+..+.... .-||+.
T Consensus 171 Fsprl~~ER~R----va~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v- 236 (341)
T COG2520 171 FSPRLSTERAR----VAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV- 236 (341)
T ss_pred ECCCchHHHHH----HHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-
Confidence 77766677763 333322 4779999999999999999999987 999999987763211 112211
Q ss_pred cccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH
Q 016155 218 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE 297 (394)
Q Consensus 218 ~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~ 297 (394)
.+.+..+.||..++-. .-+.+|-|+-..+-++. +
T Consensus 237 ---------------------------------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a~----~ 270 (341)
T COG2520 237 ---------------------------------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSAH----E 270 (341)
T ss_pred ---------------------------------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcch----h
Confidence 1126778999988753 22789988766654433 6
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 298 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 298 yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|+...-.+||+||+.- .|.+..+ ....+....+++.+..+.|++....
T Consensus 271 fl~~A~~~~k~~g~iH-----yy~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 271 FLPLALELLKDGGIIH-----YYEFVPE-----DDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred hHHHHHHHhhcCcEEE-----EEeccch-----hhcccchHHHHHHHHhhccCcceEE
Confidence 8888889999977653 1222211 0112347788999999988766553
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=59.22 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|++.|+| +|.+|..+|+ +|.+|+++|.|..=+..++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 67899999775 8899999999 8999999999998776555
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.039 Score=54.77 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHh
Q 016155 146 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 210 (394)
Q Consensus 146 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~ 210 (394)
+.|-+..-..+++.+.+. ..-++..|||+|||+|-++.-|+.. + ..|+|+|.|...+..+.
T Consensus 127 RpETEE~V~~Vid~~~~~----~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNS----EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhhh----hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 456665444455555432 1124568999999999998887543 4 46899999999986554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.04 Score=51.28 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=80.3
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|+|-|-.+.-||-. ...++-+|-...-..+-+.+... +.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~----------------------------L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE----------------------------LGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH----------------------------HT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH----------------------------hCC-----
Confidence 8999999999998888766 46899999998877544433211 010
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccCCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYGQED 330 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~g~~~ 330 (394)
.|+..+.+...+ . ...+.||+|++--+-. +..+++-+..+||+||++|-+ ||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~~----l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVAP----LDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSSS----HHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhcC----HHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 246778877766 1 2358999998876643 457788888999999999852 331
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEE
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.+=..++.+..++..|.+....
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEeee
Confidence 1112455566677777777663
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.071 Score=52.83 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+.+|+-+||| +---+..||++ |..|.++|.+...+..|+.+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34599999999 66668888865 4678999999999988876654100
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.+|.|..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||..++
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 113458999999887642 236899998665543 56667789999999999999888
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.041 Score=53.38 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
++..||++|.|+|.++.+|++.|-.|+++|.+..++-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998763
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.32 Score=47.67 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.1
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHh
Q 016155 174 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~ 210 (394)
+||++-||.|.+..-|.+.|+++ .++|++...+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 69999999999999999999985 68999998875433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=50.05 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
+|+++=||.|.+..-|.+.||++ .++|++.....+.+ .|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~--~N~~------------------------------------ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK--ANFP------------------------------------ 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH--HHHT------------------------------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh--hccc------------------------------------
Confidence 78999999999999999999975 59999998765433 2221
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEec----c--------cCChhh-HHHHHHHHHHhccCCcEEE-EecCc
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----F--------IDTAHN-IVEYIEIISRILKDGGVWI-NLGPL 318 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f----F--------lDta~n-i~~yl~~I~~~LKpGG~wI-N~GPL 318 (394)
....+|..++....... ..|+++..+ | ++...+ +...+-.+.+.+||.-.++ |+-.|
T Consensus 44 --------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l 114 (335)
T PF00145_consen 44 --------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGL 114 (335)
T ss_dssp --------EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGG
T ss_pred --------ccccccccccccccccc-cceEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEeccccee
Confidence 12334444432100001 366666443 1 222333 5444444445678966666 54333
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 386 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~ 386 (394)
+-.-. .-..+.+.+.|+++|+.+...-.-...|+..... ...|+|+.|+..
T Consensus 115 ~~~~~-----------~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R------~R~fivg~r~~~ 165 (335)
T PF00145_consen 115 LSSKN-----------GEVFKEILEELEELGYNVQWRVLNAADYGVPQNR------ERVFIVGIRKDL 165 (335)
T ss_dssp GTGGG-----------HHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-------EEEEEEEEEGGG
T ss_pred ecccc-----------ccccccccccccccceeehhccccHhhCCCCCce------eeEEEEEECCCC
Confidence 32100 1246888999999999887555445667654433 678889988743
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.01 Score=57.37 Aligned_cols=80 Identities=26% Similarity=0.276 Sum_probs=48.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
.+|||.=+|+|+-|+-||..|..|+|+|-|+.+...-..-|+++...... +.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------------------~~---------- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------------------LA---------- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------------------HH----------
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------------------HH----------
Confidence 58999999999999999999999999999998875544444433211000 00
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEE
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 284 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv 284 (394)
....+|+++.+|..++.. ...++||+|.
T Consensus 129 --~~~~ri~l~~~d~~~~L~--~~~~s~DVVY 156 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLR--QPDNSFDVVY 156 (234)
T ss_dssp --HHHHHEEEEES-CCCHCC--CHSS--SEEE
T ss_pred --HHHhCCEEEcCCHHHHHh--hcCCCCCEEE
Confidence 012358999999988643 3468999995
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.067 Score=50.14 Aligned_cols=38 Identities=24% Similarity=-0.013 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~ 208 (394)
.+.++||+=+|+|-|+.|-+.||. .|+.+|.+...+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 567999999999999999999995 69999999987743
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.043 Score=51.89 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=78.0
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 145 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 145 g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
+..||-+.|...++...+ ..+-|+|+|+|-|++--|..--+|.++|..+.-...+. .+
T Consensus 16 ~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------eN---- 73 (252)
T COG4076 16 RDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------EN---- 73 (252)
T ss_pred hhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------hc----
Confidence 456787777766666543 46899999999999999999889999999996643222 10
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---HHHHHHH
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---IVEYIEI 301 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n---i~~yl~~ 301 (394)
+++| .-.+++.+.||.++. . + +.-|+| .|-.|||+-= -...+..
T Consensus 74 -------------------~~v~--------g~~n~evv~gDA~~y-~--f--e~ADvv-icEmlDTaLi~E~qVpV~n~ 120 (252)
T COG4076 74 -------------------LHVP--------GDVNWEVVVGDARDY-D--F--ENADVV-ICEMLDTALIEEKQVPVINA 120 (252)
T ss_pred -------------------CCCC--------CCcceEEEecccccc-c--c--ccccee-HHHHhhHHhhcccccHHHHH
Confidence 1122 123589999998874 2 1 345665 5677888732 2235666
Q ss_pred HHHhccCCcEEE
Q 016155 302 ISRILKDGGVWI 313 (394)
Q Consensus 302 I~~~LKpGG~wI 313 (394)
+-..||..|..|
T Consensus 121 vleFLr~d~tii 132 (252)
T COG4076 121 VLEFLRYDPTII 132 (252)
T ss_pred HHHHhhcCCccc
Confidence 666778888887
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.42 Score=45.78 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+++|+|+|.|-.+.-||-. .-.|+-+|-...=..+-+.+.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~----------------------------eL~---- 115 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK----------------------------ELG---- 115 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH----------------------------HhC----
Confidence 579999999999998887733 4558888876544432222111 001
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~-fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
-+|+.++.+-..++-. ... ||+|++--|- ++...++-...+||+||.++. |.+...
T Consensus 116 -------L~nv~i~~~RaE~~~~----~~~~~D~vtsRAva----~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 116 -------LENVEIVHGRAEEFGQ----EKKQYDVVTSRAVA----SLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred -------CCCeEEehhhHhhccc----ccccCcEEEeehcc----chHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 1246777777666432 223 9999775542 355677788899999999874 332211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP 366 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~ 366 (394)
.=-..|.+..+...||.+++......++...+
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~ 204 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDGE 204 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCCc
Confidence 11345667778889999998775555554433
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=49.56 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=51.3
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 325 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt----a---------~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~ 325 (394)
.+..||.+++.. ...++++|+|+|- |++.. . +-+.+++++++|+|||||.++.+... .
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~----~-- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW----N-- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc----c--
Confidence 567889888632 1246899999987 55420 0 11346789999999999999863211 0
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 326 YGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 326 ~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
....+..++++.||.+..
T Consensus 76 -----------~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEee
Confidence 123456678899999765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.19 Score=47.30 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~ 210 (394)
...-+|++|||.|-..-.|++. | --..+.|++...+.+..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl 85 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL 85 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH
Confidence 3557999999999999888876 3 34569999999886543
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.061 Score=46.33 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=43.8
Q ss_pred HHHhhcCcccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 016155 135 RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFS 202 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S 202 (394)
+.++..|.+.-.++.- .|. -|..+|..+..... .++...-.|+|||.|=|++-|.+.||.=.|+|.=
T Consensus 20 ~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 20 RWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 4667789764444432 111 13344444332211 1256789999999999999999999999999953
|
; GO: 0008168 methyltransferase activity |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=50.23 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=84.0
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhcc
Q 016155 140 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 216 (394)
Q Consensus 140 DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~ 216 (394)
+|.-.=..--+..|.|=++.|..++.- +++..||+-|.|.|.++..||+.= =++...||-..-. ...+.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~e-- 148 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKALE-- 148 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHHH--
Confidence 355433333466787777777777643 378899999999999999999872 3577788844221 11111
Q ss_pred ccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH
Q 016155 217 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 296 (394)
Q Consensus 217 ~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~ 296 (394)
+|. .- ..++++.+..-|....-. ......+|+| |||-. +.-
T Consensus 149 ----eFr-------------------~h----------gi~~~vt~~hrDVc~~GF-~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 149 ----EFR-------------------EH----------GIGDNVTVTHRDVCGSGF-LIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ----HHH-------------------Hh----------CCCcceEEEEeecccCCc-cccccccceE----EEcCC-Chh
Confidence 111 10 123346666666543211 1224667777 77854 466
Q ss_pred HHHHHHHHhccCCc-EEEEecCcc
Q 016155 297 EYIEIISRILKDGG-VWINLGPLL 319 (394)
Q Consensus 297 ~yl~~I~~~LKpGG-~wIN~GPLl 319 (394)
+.+.-.+++||.+| ++.+|.|..
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHHH
Confidence 88999999999866 888998853
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.072 Score=54.17 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
.+++.+.+.++.. +.+|||+=||+|.++..||+.+-.|+|+|.+..|+..|+.
T Consensus 184 ~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 184 KLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp HHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH
Confidence 3555555555532 2389999999999999999999999999999999987763
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.013 Score=50.41 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=42.2
Q ss_pred CccEEEEec-----ccCCh-hhHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCccccCCHHHHHHHHH
Q 016155 279 AWDAVVTCF-----FIDTA-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 346 (394)
Q Consensus 279 ~fD~VvT~f-----FlDta-~ni~~yl~~I~~~LKpGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~eEl~~ll~ 346 (394)
+||+|++.- .|.-. +.+..+|+.|+.+|+|||++| +-|--|. |....... .-..++|..++...+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478886542 23332 348899999999999999999 4454443 21110000 01257788888999887
Q ss_pred h--CCCEEEEEe
Q 016155 347 H--YGFEFEKEK 356 (394)
Q Consensus 347 ~--~GF~ii~e~ 356 (394)
. .||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.77 Score=43.48 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=76.8
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 175 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
|.|+||-=|.|+..|+++|. .|.++|++..-|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 67999999999999999998 6899999999987666433211
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 332 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~ 332 (394)
...+.+....||=++... ..+..|+||-+=. -..-+.+.|+.....++..-.||- -|
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lIL-qP--------------- 101 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLIL-QP--------------- 101 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EE---------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEEE-eC---------------
Confidence 112347788888655432 1233688775421 111244556666666665556662 22
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEee
Q 016155 333 SIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 333 ~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.-...+|++.|.+.||.++.|..
T Consensus 102 --~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 102 --NTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp --SS-HHHHHHHHHHTTEEEEEEEE
T ss_pred --CCChHHHHHHHHHCCCEEEEeEE
Confidence 12678999999999999999873
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.42 Score=48.77 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf----~v~G~D~S~~ML~~s~ 210 (394)
.++.+|||+.++-|.=+..||++.. .|+++|.|..=+-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4778999999999999888888865 4899999997764333
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.37 Score=49.80 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~-----------------------------------------v~G~D~S~~ML~~s~ 210 (394)
...++||=||.|.++.|.|.+|-+ ..|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 357999999999999999999842 569999999998776
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--- 287 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--- 287 (394)
- | +.. +...+.+.|.++|+..+.. +. +.+|+||++=
T Consensus 272 ~--N-A~~-----------------------------------AGv~d~I~f~~~d~~~l~~-~~--~~~gvvI~NPPYG 310 (381)
T COG0116 272 A--N-ARA-----------------------------------AGVGDLIEFKQADATDLKE-PL--EEYGVVISNPPYG 310 (381)
T ss_pred H--H-HHh-----------------------------------cCCCceEEEEEcchhhCCC-CC--CcCCEEEeCCCcc
Confidence 2 2 111 1223458999999998864 22 7899999982
Q ss_pred -ccCChhhHHHH----HHHHHHhccCCcEEEEe
Q 016155 288 -FIDTAHNIVEY----IEIISRILKDGGVWINL 315 (394)
Q Consensus 288 -FlDta~ni~~y----l~~I~~~LKpGG~wIN~ 315 (394)
=|.+...+... .+++.+.++--+.+|-.
T Consensus 311 eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 311 ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 25544434433 33444555555666643
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.41 Score=45.54 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++..|+|+||--|.-+..++++.-. |.|+|+-+--. +
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------------------------------~- 84 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------------------------------I- 84 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------------------------------------C-
Confidence 6789999999999999999888543 89999875110 1
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecc--------cCChhh---HHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-----~~~~~~fD~VvT~fF--------lDta~n---i~~yl~~I~~~LKpGG~ 311 (394)
.++.+++|||++--.. .......|+|++=.. +|++.- ....++....+|+|||.
T Consensus 85 ----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 85 ----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred ----------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCe
Confidence 1267788888752110 012344699985332 233211 11245566689999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+.- . |. | =..+++...+++ .|+.++..
T Consensus 155 fv~K---~--fq---g--------~~~~~~l~~~~~-~F~~v~~~ 182 (205)
T COG0293 155 FVAK---V--FQ---G--------EDFEDLLKALRR-LFRKVKIF 182 (205)
T ss_pred EEEE---E--Ee---C--------CCHHHHHHHHHH-hhceeEEe
Confidence 9961 1 11 1 135666677755 58888754
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.11 Score=45.58 Aligned_cols=74 Identities=30% Similarity=0.349 Sum_probs=49.3
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccc
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE 335 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ie 335 (394)
+.+..||+.+... .-...||+|+-==|- ...|. .++|+.|+++++|||++.. |.
T Consensus 33 L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys-------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS-------------- 90 (124)
T ss_dssp EEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S---------------
T ss_pred EEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee--------------
Confidence 7899999987543 123678877422111 12333 4799999999999999984 21
Q ss_pred CCHHHHHHHHHhCCCEEEEEe
Q 016155 336 LSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 336 LS~eEl~~ll~~~GF~ii~e~ 356 (394)
+..-+++.|.++||++.+..
T Consensus 91 -~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE
T ss_pred -chHHHHHHHHHcCCEEEEcC
Confidence 23458899999999998765
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.33 Score=46.41 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=45.2
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn 214 (394)
-+|.|-+. |.. +-..+..-+.+..-+++.+||=+|+-+|..+-.++.- | =.+.|+|||+.|. +-+|+
T Consensus 50 eYR~Wnp~----RSK----LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RSK----LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hhH----HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 332 3333333222222347889999999999987777655 3 2589999999886 33455
Q ss_pred ccc
Q 016155 215 HTE 217 (394)
Q Consensus 215 ~~~ 217 (394)
-+.
T Consensus 119 ~a~ 121 (231)
T COG1889 119 VAE 121 (231)
T ss_pred HHH
Confidence 444
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.093 Score=45.18 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.4
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHh
Q 016155 174 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~ 210 (394)
.|||+|||.|.++..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 3899999999999999999875 999999999985444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.44 Score=46.81 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.6
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta--------------~ni~~yl~~I~~~LKpGG~wIN 314 (394)
-.++.||.+++.. ...+++||+|+|- |++... .-+.++++.++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4678899988532 1236899999994 765210 1134688999999999999974
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.35 Score=51.81 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||. |..+...|+. |..|.+.|.+..-+..++-+ .+. ...+-+ ..++....
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA~---~v~i~~---------~e~~~~~~----- 224 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GAE---FLELDF---------EEEGGSGD----- 224 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCe---EEEecc---------cccccccc-----
Confidence 688999999996 5556555554 99999999999887655431 110 000000 00000000
Q ss_pred CCCCCCCCCCceeEEecccc----cccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 249 IHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~----ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
.+ ..-.-.++. +.+. ..-+.+|+|+++--+...+...-..++..+.+||||+.+.+|
T Consensus 225 ------gy---a~~~s~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 ------GY---AKVMSEEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ------ch---hhhcchhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 000001111 1111 012468999999887764444344589999999999999764
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.92 Score=44.21 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=88.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|+|+|..+--|. +-|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH--------------------
Confidence 35555554 3321 2678999999999999999999996 6999999985541 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhhHHHHHHHHHHhccCCcEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
+.+ .|- +.|-.-+++.+... .-.+..|++++- -||- +...|..+..+|+|||-.
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 22222333332211 111345666543 3554 456789999999999999
Q ss_pred EE-ecCcchhhhhccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN-~GPLlyh~~~~~g~----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|- +=|.+-.-.+..+. .+........+++...++..||.+....
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 86 44542211111110 1111234577889999999999988743
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.2 Score=53.66 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eL------A~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
.|+..|..+.|+........|+++|+|.|=|+... ..+-.++.++|-.+-.+..-. |. +..
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~--n~~-------- 417 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NR--NFE-------- 417 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hh--chh--------
Confidence 48888999988765434567779999999986543 223345567776654442211 10 000
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHh
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 305 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~ 305 (394)
.-.+.+.++-+||+++-. | .++-|++|+-. |=|..-. .+.|.-+.+.
T Consensus 418 --------------------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNELS-PECLDG~q~f 467 (649)
T KOG0822|consen 418 --------------------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNELS-PECLDGAQKF 467 (649)
T ss_pred --------------------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccCC-HHHHHHHHhh
Confidence 012347889999999853 2 47889998764 5444321 2889999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.07 Score=51.52 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
....|+|.-||-|.-+..+|..|-.|.++|+++.-+.+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 3457999999999999999999999999999998887766
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.12 Score=51.44 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccc
Q 016155 146 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 225 (394)
Q Consensus 146 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~ 225 (394)
..-|-...+...++|... | .+.-+||.|||-|.+..- .-.-.+.|.|++...+- .+.+
T Consensus 26 s~tr~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~-------~ak~------- 83 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLG-------GAKR------- 83 (293)
T ss_pred cccccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcC--CCcceeeecchhhhhcc-------cccc-------
Confidence 333444444555666553 2 356799999999987211 01224668888875542 1111
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHH
Q 016155 226 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEI 301 (394)
Q Consensus 226 Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~l-s~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta~ni~~yl~~ 301 (394)
. +- .++.+|++.+. .....||.+++.-+ |-|..-....+++
T Consensus 84 ------------~--------------------~~~~~~~ad~l~~p---~~~~s~d~~lsiavihhlsT~~RR~~~l~e 128 (293)
T KOG1331|consen 84 ------------S--------------------GGDNVCRADALKLP---FREESFDAALSIAVIHHLSTRERRERALEE 128 (293)
T ss_pred ------------C--------------------CCceeehhhhhcCC---CCCCccccchhhhhhhhhhhHHHHHHHHHH
Confidence 0 11 35667887763 45789999887654 4455556688999
Q ss_pred HHHhccCCcEEE
Q 016155 302 ISRILKDGGVWI 313 (394)
Q Consensus 302 I~~~LKpGG~wI 313 (394)
..++|||||.-.
T Consensus 129 ~~r~lrpgg~~l 140 (293)
T KOG1331|consen 129 LLRVLRPGGNAL 140 (293)
T ss_pred HHHHhcCCCceE
Confidence 999999999843
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.45 Score=48.17 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=32.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|||. |.++..+|++ |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 8898888776 76 5999999999875443
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.95 Score=43.85 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
||...+.+.+. .++.+||.+|=|+|-.+-.+-.+- +.=+-+|.-..-+.- +....
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr---mr~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR---MRDWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH---HHhcc-----------------
Confidence 58877777654 278899999999999877775553 444555655554411 00000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
+ ....|+-.+.|-..++-.. -.++.||.|.---|-..-+++.++.+.+.++|||+|+|=
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0123455555555444321 235779999654455556788899999999999999996
Q ss_pred E
Q 016155 314 N 314 (394)
Q Consensus 314 N 314 (394)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 3
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.11 Score=47.47 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~f 211 (394)
++.+.+|+|+|-||++..-|+.| +..+|+|+.+-.+..|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 67899999999999999999999 889999999988776664
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.23 Score=47.24 Aligned_cols=77 Identities=22% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC--C-CccccCCHHHHHHHHHhCCCEEEE
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE--D-EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~--~-~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.++|.+++.-+|.+ .+..+....+++.|||||+++-. -|-.+ .|.. . ...-.++..-+++..+++||+++-
T Consensus 129 ~~~yhdmh~k~i~~-~~A~~vna~vf~~LKPGGv~~V~----dH~a~-pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 129 AQNYHDMHNKNIHP-ATAAKVNAAVFKALKPGGVYLVE----DHRAD-PGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred chhhhhhhccccCc-chHHHHHHHHHHhcCCCcEEEEE----ecccc-CCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 34555555545553 34568899999999999999842 23222 1111 1 112246888899999999999999
Q ss_pred Eeeccc
Q 016155 355 EKTIET 360 (394)
Q Consensus 355 e~~i~~ 360 (394)
|+.|..
T Consensus 203 eS~ila 208 (238)
T COG4798 203 ESEILA 208 (238)
T ss_pred eehhhc
Confidence 886543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.7 Score=43.76 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...+++++=||.|.+..-|...||++ .++|+....+.+.+ .|+. .
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~--~n~~----------~---------------------- 47 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK--ANFP----------H---------------------- 47 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH--HhCC----------C----------------------
Confidence 35689999999999988888999985 59999998875433 2211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Ee
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NL 315 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-------------FlDta~ni~~yl~~I~~~LKpGG~wI-N~ 315 (394)
-.+..+|..++.........+|+|+.-+ +-|+-..+.-.+..+-..++|.-.++ |+
T Consensus 48 ----------~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV 117 (328)
T COG0270 48 ----------GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENV 117 (328)
T ss_pred ----------CceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecC
Confidence 0112233333221100001456665332 44554555555566667788833223 34
Q ss_pred cCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 316 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 316 GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
.-|+.+ -.-.+++|++.|++.||.+...-.....|...... ..+|.|+.++
T Consensus 118 ~gl~~~------------~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~R------eRvfiig~~~ 168 (328)
T COG0270 118 KGLLSS------------KGQTFDEIKKELEELGYGVEFNILNAADYGVPQSR------ERVFIVGFRR 168 (328)
T ss_pred chHHhc------------CchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCc------cEEEEEEecC
Confidence 333332 12378999999999999843322223445543322 4566676443
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.4 Score=42.35 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=30.1
Q ss_pred EEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHh
Q 016155 175 CLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 210 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~Gf~v~-G~D~S~~ML~~s~ 210 (394)
||++=||.|.+..-|.+.||++. ++|+......+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 58899999999999999999975 7999998775433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.99 Score=46.76 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+||++|-|-|--++||-+-- + +++-+|+.+.|+..++... +..+ -|+-+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~--vlr~------------~N~~sf----------- 343 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHAT--VLRA------------LNQGSF----------- 343 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhh--Hhhh------------hccCCc-----------
Confidence 56799999999999999998874 4 6999999999998776221 0000 000000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh-hH-----HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NI-----VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~-ni-----~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..|...+-. ...+.||+|+--+ .|... .+ .++..-..+.|+++|++|-
T Consensus 344 -------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 -------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11247778888777643 2457899886433 33211 11 2466667788999999994
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.2 Score=46.64 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=28.0
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eL-A~~Gf~v~G~D~S~~ML~ 207 (394)
.+.+|++.|+|. |+.+..+ ...|..|..+|.+..-+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~ 239 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL 239 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH
Confidence 578999999996 6554444 445999999999876554
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.97 Score=44.15 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+.|||. |..+..+|+ +|+ .+.+.+.|..+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 567899988876 778877776 488 7999999887764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.78 Score=44.37 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
.+.+||+.|+| +|.++.++|+ +|..|++.+-|..++..
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~ 204 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLEL 204 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 56789998877 5888888887 49999999999888643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.91 Score=44.98 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.||| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46789999876 56777777765 87 5889999987765443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.15 Score=41.91 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=40.7
Q ss_pred EEecCCCChhHHHHHHc----C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 176 LVPGAGLGRLALEISHL----G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~----G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
|++|+..|+-+..|++. + ..+.++|.-.. ....+.++ +..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~----------------------------~~~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEII----------------------------KKA------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhh----------------------------hhc------
Confidence 57898899987777653 2 36888888774 00000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhHHHHHHHHHHhccCCcEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt---a~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.|++.++... ...++||+| |||- .+.+...++.+...|+|||++|
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 1123589999999876421 112456655 6774 3667788999999999999987
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.9 Score=40.48 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
+++++-+.+... ++..+||-=+|.|..+..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 445555544322 5668999999999999999876 257999999999997766443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.15 E-value=1 Score=49.38 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=52.1
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 331 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD---ta~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~ 331 (394)
.+.++.||+.+... .-...||+| |+| .+.|. .++|+.|++++||||+|+. |
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-----~----------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-----F----------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-----e-----------
Confidence 37789999987543 112446666 666 33443 4789999999999999984 2
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEE
Q 016155 332 MSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 332 ~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
-+..-+++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 15667889999999999874
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.3 Score=40.86 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| .|..+..+++ +|..|.+.+.+.....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 57799999998 4888777766 4899999999876653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.77 Score=47.11 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+.+=+.+|.....- .+++.-|+||=-|||.|.+--|.-|.-|.|-|+.+-|+-
T Consensus 192 mDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 192 MDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred cchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 34455555554332 237889999999999999999999999999999999973
|
|
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.04 E-value=4.1 Score=41.00 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHhhcCcccChhHH--hhchH---HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 016155 135 RNIVRDWAAEGKTER--DQCYK---PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 209 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER--~~~y~---pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s 209 (394)
.|+-..|..+-.+|- +-+++ .|.+++++.+|+. .....-++.-.-|.|.+.-+|++.||+|.|.|++..|..+-
T Consensus 210 lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~-~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 210 LQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPEL-GLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEAR 288 (359)
T ss_pred HHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhh-cCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHH
Confidence 456667877544443 22332 3566677777754 23455677889999999999999999999999999998643
Q ss_pred h
Q 016155 210 S 210 (394)
Q Consensus 210 ~ 210 (394)
+
T Consensus 289 ~ 289 (359)
T KOG2872|consen 289 R 289 (359)
T ss_pred H
Confidence 3
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.89 Score=46.62 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
.+.+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45679999998 6677666544 599999999987543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.5 Score=43.08 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 202 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S 202 (394)
.|-..++..++++.+--. ...||-..+..+.+++....| ...+|||+|||+==|+..+... +..+.|.|++
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 444555555555544322 345676666666666655544 4679999999999999877666 5788899999
Q ss_pred HHHHHHHhhhhh
Q 016155 203 YYMMICSSFILN 214 (394)
Q Consensus 203 ~~ML~~s~filn 214 (394)
..|+.+-+-+++
T Consensus 139 ~~~ve~l~~~l~ 150 (251)
T PF07091_consen 139 SQLVEFLNAFLA 150 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999976554443
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=2.6 Score=47.03 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=58.9
Q ss_pred CeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 173 PACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~----~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
..|+|+|+|.|-|+-..-+ .| +.+.++|-....++ +++.+-.+...|+ + ..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-------- 758 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-------- 758 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc--------
Confidence 5789999999999654422 24 57889999843221 1111100111121 0 00
Q ss_pred CCCCCCCCCCCCceeEEecccccccCC--------CCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccC
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~--------~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKp 308 (394)
..-+..+.++..||+++-.. |...+++|+||+-. |=|..-. .+.|.-+.+.||+
T Consensus 759 -------~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELS-PECLDGaQrfLKd 823 (1072)
T PTZ00357 759 -------YTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELS-PECLEAFHAQLED 823 (1072)
T ss_pred -------ccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccCC-HHHHHHHHHhhhh
Confidence 01134478899999997431 11224799999864 5443211 2677777777776
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.76 E-value=2.2 Score=43.04 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+..+|||+|-|-|....+.++. -. +.-+|+...-+..+..- +
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y---------------------------------~ 165 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQY---------------------------------L 165 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHH---------------------------------h
Confidence 36789999999999999999988 33 33445554333222211 1
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhh--HHHHHHHHHHhccCCcEEEEecCcch
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHN--IVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--FlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
|.+.-+ -.+.++.++-||=..++.. ...+.||+|+|-- -+-.|.+ ...|+..+.+.||+||+.+..|--+|
T Consensus 166 p~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 166 PTLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 111100 0123467788886665532 2368999998753 1223334 34689999999999999998765443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.8 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+|.++|+|+ |.++..|++.|+.|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987653
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=87.62 E-value=1.5 Score=39.82 Aligned_cols=50 Identities=26% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 209 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s 209 (394)
+++.|-+.+.+ ++..||||=||.|..+..-.++|....|+|++......|
T Consensus 180 l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 180 LIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 45555555432 577999999999999999999999999999999887554
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.1 Score=41.56 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=47.6
Q ss_pred CCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 277 VGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 277 ~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
..+||+|++. .|+|-. -....++|..+|+|.|.-+-+.|- ..-|.+.....+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~--h~sLvdtIk~lL~p~g~Al~fsPR---------------Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEH--HESLVDTIKSLLRPSGRALLFSPR---------------RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHH--HHHHHHHHHHHhCcccceeEecCc---------------ccchHHHHHHHHHhceeEEEe
Confidence 4689999854 566654 347899999999999997655442 234788888889999999887
Q ss_pred Ee
Q 016155 355 EK 356 (394)
Q Consensus 355 e~ 356 (394)
++
T Consensus 164 ~e 165 (201)
T KOG3201|consen 164 EE 165 (201)
T ss_pred cc
Confidence 54
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.3 Score=39.60 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=76.0
Q ss_pred CeEEEecCCCC--hhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 173 PACLVPGAGLG--RLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 173 ~~VLvpGCGlG--RLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
...||+|||+= ..++|+|++ +..|.=+|....-+..++-+|....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------------------------ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------------------------ 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------------------------
Confidence 47999999975 357999877 6889999999988776666653211
Q ss_pred CCCCCCCCCCCceeEEeccccccc---CCCCCCCCcc-----EEE-E--ecccCChhhHHHHHHHHHHhccCCcEEEE--
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD-----AVV-T--CFFIDTAHNIVEYIEIISRILKDGGVWIN-- 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely---~~~~~~~~fD-----~Vv-T--~fFlDta~ni~~yl~~I~~~LKpGG~wIN-- 314 (394)
.....++.+|+++.- ..|...+-+| +|+ . ..|+....+....+.++...|.||.+++-
T Consensus 120 ---------~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 ---------RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp ---------TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred ---------CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 011567888887621 1111122333 233 2 24787777899999999999999999983
Q ss_pred ec----Ccc-----hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 315 LG----PLL-----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 315 ~G----PLl-----yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+. |.. -.|.. ++.+ ...-|.+||.+++. ||++++.
T Consensus 191 ~t~d~~p~~~~~~~~~~~~--~~~~--~~~Rs~~ei~~~f~--g~elveP 234 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ--AGSP--GRPRSREEIAAFFD--GLELVEP 234 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH--CCS------B-HHHHHHCCT--TSEE-TT
T ss_pred cCCCCCHHHHHHHHHHHHc--CCCC--ceecCHHHHHHHcC--CCccCCC
Confidence 11 110 00111 1111 23459999999994 9999873
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.6 Score=41.23 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..||+. |+.|.++.-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56789998887 48888888777 999999988877653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.86 E-value=2.8 Score=41.72 Aligned_cols=37 Identities=11% Similarity=-0.189 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~---Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|||. |.++..+|++ |..|+++|.+..-+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 577999999864 4556676663 467999998876554
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.8 Score=40.58 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=27.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|.++..+|+. |..|.+++.+..=+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 57899999965 56666777665 888999988876543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=86.42 E-value=4 Score=39.57 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|+.+..+|+. |+.|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 89988888777 999999998888764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.5 Score=41.25 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=27.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..+|+. |. .+.+++-+.....
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~ 206 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLD 206 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 56789998776 57777777776 75 7888887776654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=85.85 E-value=4.5 Score=40.21 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~v~G~D~ 201 (394)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999874 7777777664 889999886
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.7 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 6789999997 599999988776 999999988876653
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.3 Score=42.35 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| .|.++..+|+. |.. |.+++.+..-+..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 67899999875 36667777765 885 99999888766443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.57 E-value=2.7 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe
Q 016155 293 HNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 293 ~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..|..||+...++|.|||++|-+
T Consensus 202 k~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 202 KPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred chHHHHHHHHHHhccCCCeEEEE
Confidence 34778999999999999999965
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.27 E-value=2.6 Score=44.90 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+|++.|+|. |+. +..+...|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 578999999983 333 22233358899999988743
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=57 Score=34.86 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHhhCCCCC---CCCCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHh
Q 016155 158 EELDALFPNRS---KESPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 210 (394)
Q Consensus 158 ~~L~~~~p~~~---~~~~~~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~ 210 (394)
..|.+++|... ...+.+++|+=||.|.+..-|-..|++| .++|+......+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 71 AHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred HHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 34555454321 2246799999999999999998899975 58999998765433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=84.38 E-value=2.4 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML 206 (394)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+...-
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5789999976 5666666655 89999999988653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=84.01 E-value=2.3 Score=41.06 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.| .|+|.++..+|+. |..|.+..-|..-.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~ 181 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV 181 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 678999998 4789999888775 88999888777554
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=3.6 Score=40.42 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+++.+||+-|+ |.|.++..+|+. |..|.+..-+..-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~ 189 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV 189 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 36789999996 789998888875 99999888776554
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.1 Score=43.90 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCeEEEecCCCC-hhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLG-RLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlG-RLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|+|.= ..+..+++ +|..|++.|.+..-+..++- +. ..+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-----a~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-----AEF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-----CeE---------------------Eecc-
Confidence 5689999999864 55555544 59999999999876544331 10 000 0110
Q ss_pred CCCCCCCCCCc-eeEEeccccc--ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEG-FSMCGGDFVE--VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~-ls~~~GDf~e--ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..... ....+ -...-.+|.+ .+..+.+...+|+|+|+-.++..+...-..+++-+.+|||++.|++
T Consensus 215 ~~e~g-~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEG-GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccc-cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 00000 00000 0111123221 0000122356999999998887665444677888999999999964
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.43 E-value=5.7 Score=38.52 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..+|+. |+. |.+++-+.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56799998876 47777777665 777 888888877653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.38 E-value=4.4 Score=40.94 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.5
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|+|. |+ +|..|+..|+.|.+.|.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 566899999987 43 5677778899999999875
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.01 E-value=3.7 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.049 Sum_probs=28.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| +|.++..+|+. |. .|.+++.+..-+..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~ 206 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVEL 206 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 57789998876 56677777666 88 48899988766543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=82.98 E-value=4.5 Score=39.58 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML 206 (394)
++.+||+.||| .|.++..+|+. |.. |.++|.....+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 35679999875 57777777764 887 55677776554
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=82.95 E-value=5.9 Score=39.14 Aligned_cols=39 Identities=15% Similarity=-0.070 Sum_probs=33.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s 209 (394)
++.+|||..+|-|.=+..||.+-. .++++|++..-+..-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l 126 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRL 126 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHH
Confidence 567899999999999999988854 799999999887543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=11 Score=36.82 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 689999997 457899999999999999887554
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=82.72 E-value=7.8 Score=36.54 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+|. |..+..+|+. |.. |.+++-+...+.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE 136 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence 678899998865 7777777765 888 999998877754
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.70 E-value=0.61 Score=42.98 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecC-cch---hhhhc--cCC-CC----CccccCCHHHH
Q 016155 275 SQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGP-LLY---HFADL--YGQ-ED----EMSIELSLEDV 341 (394)
Q Consensus 275 ~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GP-Lly---h~~~~--~g~-~~----~~~ieLS~eEl 341 (394)
+.+++.|+|.+-.++.. ...-..+++..++.|||||++-..-| +.| -|..+ -|+ .| ...+-.+.+++
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m 122 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMM 122 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHH
Confidence 45789999887766553 34466899999999999999965434 322 22211 121 11 11223366677
Q ss_pred HHHHHhCCCEEE
Q 016155 342 KRVALHYGFEFE 353 (394)
Q Consensus 342 ~~ll~~~GF~ii 353 (394)
..++..+||...
T Consensus 123 ~n~~m~~~~~~k 134 (185)
T COG4627 123 FNGFMDAGFVVK 134 (185)
T ss_pred HHHHHhhhheeh
Confidence 777777777653
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=82.58 E-value=19 Score=35.12 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=80.4
Q ss_pred CCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...|+.+|||+=.-++.|... |..+.-+|+-..+ ..-+.++.....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~-~~K~~~l~~~~~-------------------------------- 128 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVL-AFKEKVLAELGA-------------------------------- 128 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHH-HHHHHHHHHcCC--------------------------------
Confidence 346999999999999988643 4555556665533 222222221100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCcc-----EEEE-e--cccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWD-----AVVT-C--FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY 320 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD-----~VvT-~--fFlDta~ni~~yl~~I~~~LKpGG~wIN--~GPLly 320 (394)
....+..++..|+.+-....-....|| +++. + +||+.. .+...|+.|.+...||+.++- ++|+.-
T Consensus 129 ----~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~~~~~ 203 (260)
T TIGR00027 129 ----EPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVRPLDG 203 (260)
T ss_pred ----CCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEeccccch
Confidence 011235666667642100000011233 2221 1 466655 488899999998889888774 455310
Q ss_pred ---h--hhh---c-cCC-CCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 321 ---H--FAD---L-YGQ-EDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 321 ---h--~~~---~-~g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
. ... . .+. .......++.+|+..++...||+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 204 EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 000 0 000 111234578999999999999998764
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.52 E-value=1.2 Score=47.59 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=34.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+.-+||+-||||-++..+|+.--.|.|+|+|...+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 457899999999999999999899999999999886555
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=82.42 E-value=3.7 Score=40.18 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=28.4
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHH
Q 016155 173 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMM 206 (394)
Q Consensus 173 ~~VLvpGC--GlGRLa~eLA~~-Gf-~v~G~D~S~~ML 206 (394)
.+||+-|+ |+|.++..+|+. |. .|.+++-|..-+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC 193 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 79999985 799999988876 98 799998887654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.34 E-value=5.6 Score=35.57 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred ccEEEEecccCChhhHHHHHHH--HHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 280 WDAVVTCFFIDTAHNIVEYIEI--ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 280 fD~VvT~fFlDta~ni~~yl~~--I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-|+|++|.. ....+.+.+.. +...|++|-++|+.+..-. -+..++.+.+.+.|...+.-.
T Consensus 58 ~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p---------------~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 58 ADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIIDMSTISP---------------ETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp BSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H---------------HHHHHHHHHHHHTTEEEEEEE
T ss_pred ccceEeecc--cchhhhhhhhhhHHhhccccceEEEecCCcch---------------hhhhhhhhhhhhccceeeeee
Confidence 488888654 33446677787 9999999999998544311 134567777778898877743
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=6.3 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+|++.|+|. |+. |..+...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999985 443 23333458899999887643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=81.59 E-value=2 Score=45.86 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=45.7
Q ss_pred CCCCccEEEEecc----cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 016155 276 QVGAWDAVVTCFF----IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 276 ~~~~fD~VvT~fF----lDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ 351 (394)
...+||+|-.... .+. -++.+.+-+|-|+|+|||..|- .|. .--.++++.+++.+.|+
T Consensus 424 YPRTYDLlHA~~lfs~~~~r-C~~~~illEmDRILRP~G~~ii--------RD~---------~~vl~~v~~i~~~lrW~ 485 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDR-CEMEDILLEMDRILRPGGWVII--------RDT---------VDVLEKVKKIAKSLRWE 485 (506)
T ss_pred CCcchhheehhhhhhhhccc-ccHHHHHHHhHhhcCCCceEEE--------ecc---------HHHHHHHHHHHHhCcce
Confidence 4588998875532 233 4588899999999999999983 111 11468899999999998
Q ss_pred EEEEe
Q 016155 352 FEKEK 356 (394)
Q Consensus 352 ii~e~ 356 (394)
.....
T Consensus 486 ~~~~d 490 (506)
T PF03141_consen 486 VRIHD 490 (506)
T ss_pred EEEEe
Confidence 76544
|
; GO: 0008168 methyltransferase activity |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=81.24 E-value=3 Score=38.23 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCC--CCh-hHHHHHHcCCeEEEEeCCH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAG--LGR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCG--lGR-La~eLA~~Gf~v~G~D~S~ 203 (394)
+++.+++.+.+. .+.+||++|.| .|. ++..|..+|..|+..+-..
T Consensus 31 ~v~l~~~~~~~l---~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDL---AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 455566655432 68899999999 388 7888899999887666543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=81.23 E-value=5.3 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~-----g-~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----G-IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----C-CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987654 1 12357888899999999999874
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.90 E-value=9.6 Score=37.45 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+-|+|. |.++..+|+. |.. |.+.+-+.....
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 677899887765 7788888776 887 888888776653
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.47 E-value=5.7 Score=38.02 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
++..||||=||.|..+..-.+.|....|+|++......+.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 5779999999999999999999999999999998876554
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=80.12 E-value=7.7 Score=38.07 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=25.8
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
+.+|+|+.+..- ...+..+.++|+++|++|.+|.
T Consensus 229 ~~~d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 229 EGVDVFLEMSGA------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhcCCCEEEEEcc
Confidence 458999876331 1457788999999999999875
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.3 Score=37.07 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCc
Q 016155 181 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 259 (394)
Q Consensus 181 GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ 259 (394)
|.|.++..+|+. |..|.++|.+..=+..++-+ .+. .. +.. . .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~--Ga~----~~----~~~-------~-----------~--------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL--GAD----HV----IDY-------S-----------D--------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TES----EE----EET-------T-----------T---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh--ccc----cc----ccc-------c-----------c---------
Confidence 578888888776 99999999999766443311 000 00 000 0 0
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
.. ......++.. ...+|+|+.| .. ....++...++|+|||+++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0011123322 2579999654 22 23688999999999999998763
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 394 | |||
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 4e-06 |
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 273 DPSQVGAWDAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQ 328
+ D +++ +D A ++ Y + + +LK GG + + L + + G+
Sbjct: 151 GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY-MIGE 209
Query: 329 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKS 385
+ S+ L E V+ G+ E+ + I Y++ N RK
Sbjct: 210 QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSST----TSNNEGLFSLVGRKPG 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.76 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.74 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.74 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.74 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.73 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.73 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.72 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.71 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.7 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.7 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.7 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.69 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.69 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.68 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.67 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.66 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.66 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.66 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.65 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.65 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.65 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.64 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.63 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.63 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.63 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.63 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.62 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.61 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.61 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.61 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.6 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.6 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.54 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.53 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.51 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.51 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.5 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.49 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.48 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.47 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.46 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.45 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.45 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.43 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.41 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.41 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.4 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.4 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.4 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.4 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.4 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.39 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.39 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.39 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.38 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.38 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.38 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.37 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.37 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.36 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.36 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.36 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.35 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.35 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.35 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.34 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.33 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.33 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.33 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.32 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.32 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.32 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.31 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.31 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.3 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.3 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.3 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.29 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.29 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.29 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.28 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.27 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.27 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.26 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.26 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.26 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.25 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.25 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.25 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.24 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.24 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.24 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.23 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.23 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.23 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.23 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.23 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.22 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.22 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.22 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.22 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.22 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.22 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.21 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.2 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.19 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.18 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.17 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.17 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.16 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.12 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.12 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.12 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.11 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.11 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.11 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.11 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.1 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.1 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.1 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.09 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.08 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.07 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.06 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.06 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.06 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.04 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.02 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.01 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.01 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.01 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.0 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.0 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.99 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.99 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.99 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.98 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.98 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.98 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.97 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.97 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.97 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.96 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.96 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.96 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.96 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.96 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.94 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.93 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.93 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.91 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.9 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.88 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.87 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.86 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.84 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.84 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.83 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.83 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.82 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.8 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.78 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.75 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.73 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.72 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.72 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.65 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.64 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.6 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.58 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.55 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.53 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.53 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.51 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.49 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.49 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.46 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.44 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.41 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.37 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.37 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.36 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.36 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.33 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.3 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.25 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.15 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.13 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.12 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.09 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.09 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.08 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.06 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.04 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.02 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.01 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.99 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.95 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.91 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.9 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.79 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.67 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.65 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.5 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.44 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.36 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.16 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.12 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.87 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.85 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.76 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.73 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.71 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.65 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.55 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.2 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.06 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.54 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.44 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.1 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.07 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.01 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.88 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 94.68 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 94.11 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.07 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.93 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.83 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 93.79 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.65 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.57 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.57 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.52 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.48 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.44 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.38 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.99 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.75 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.45 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.41 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.3 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.27 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.26 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.19 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.13 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.04 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 91.97 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.94 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 91.87 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.84 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 91.8 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.75 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.37 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 91.37 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.28 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.26 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.24 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 91.13 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.99 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.86 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 90.84 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.7 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.64 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.61 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.54 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.49 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.49 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.49 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.29 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.16 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.12 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.96 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.83 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.24 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 88.98 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 88.92 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.82 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.79 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 88.36 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.26 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.25 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.99 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 87.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 87.62 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 87.36 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.03 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 86.93 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 86.58 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.58 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 86.46 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.37 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 86.31 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 86.1 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 85.87 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 85.6 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.3 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 85.12 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 85.09 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.75 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 84.54 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.52 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 84.49 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.32 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.21 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.08 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 83.96 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 83.7 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 83.58 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 83.57 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 83.45 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 83.16 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 82.89 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 82.87 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 82.83 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 82.79 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 82.62 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 82.6 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 82.49 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 82.12 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 81.74 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.85 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 80.66 |
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=156.36 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=123.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+...
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------------------------- 113 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK---------------------------------- 113 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-----------------------------------
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 3579999999999999999999999999999999997766332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc-----------
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL----------- 319 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl----------- 319 (394)
....++.++.+|+.++.. ...++||+|++...+...++...++++++++|||||+++-..|..
T Consensus 114 ----~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (285)
T 4htf_A 114 ----GVSDNMQFIHCAAQDVAS--HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAG 187 (285)
T ss_dssp ----CCGGGEEEEESCGGGTGG--GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTT
T ss_pred ----CCCcceEEEEcCHHHhhh--hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhc
Confidence 011347899999988642 236899999998877777788899999999999999998532211
Q ss_pred -hhhh--hccC---CCCCccccCCHHHHHHHHHhCCCEEEEEeec--cccCCCCcc-------------------ccccc
Q 016155 320 -YHFA--DLYG---QEDEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPR-------------------SMMQN 372 (394)
Q Consensus 320 -yh~~--~~~g---~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i--~~~Y~~d~~-------------------sm~~~ 372 (394)
|.+. .... ........++.+++.++++++||++++...+ ...|..+.. .-+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~ 267 (285)
T 4htf_A 188 NFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYIT 267 (285)
T ss_dssp CHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSSTTHHHHTHHHHHHHHHHHTTSTTGGG
T ss_pred CHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccccccCcccHHHHHHHHHHhcCCChHHH
Confidence 1100 0000 0111234579999999999999999986643 334443321 11223
Q ss_pred ccceEEEEEEEcCc
Q 016155 373 RYFTAFWTMRKKSV 386 (394)
Q Consensus 373 ~Y~~~f~va~K~~~ 386 (394)
..+-..+||||+.+
T Consensus 268 ~~~~~~~varK~~~ 281 (285)
T 4htf_A 268 LGRYIHVTARKPQS 281 (285)
T ss_dssp GCSEEEEEEECCCC
T ss_pred HHhheEEEEEcCCc
Confidence 34557889999854
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=154.21 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=112.6
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.+..+++.|.... ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 29 ~~~~~~~~l~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------ 84 (250)
T 2p7i_A 29 MHPFMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL------------------ 84 (250)
T ss_dssp HHHHHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS------------------
T ss_pred HHHHHHHHHHhhc------CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh------------------
Confidence 3455666666543 3558999999999999999999999999999999996555110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH-HhccCCc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGG 310 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~-~~LKpGG 310 (394)
+ .++.++.+|+.++. .+++||+|++...|...++...+|++++ ++|||||
T Consensus 85 ---------------~----------~~v~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG 135 (250)
T 2p7i_A 85 ---------------K----------DGITYIHSRFEDAQ----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGG 135 (250)
T ss_dssp ---------------C----------SCEEEEESCGGGCC----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEE
T ss_pred ---------------h----------CCeEEEEccHHHcC----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCC
Confidence 0 03788999998863 2578999999988877778889999999 9999999
Q ss_pred EEEEecCcchhhhhc----cCC------------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 311 VWINLGPLLYHFADL----YGQ------------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~----~g~------------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+++-..|........ .+. .......++.++++++++++||++++..
T Consensus 136 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 136 RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 998644432111000 000 0011235799999999999999999865
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=161.00 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=125.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
..++..|.+.+... ..++.+|||+|||+|.++..++..|+ .|+|+|+|..||..++--++.. ...+..-|.+..-+
T Consensus 39 ~~~~~~~~~~~~~~-~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~--~~~~d~s~~~~~~~ 115 (263)
T 2a14_A 39 KFNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE--PGAYDWTPAVKFAC 115 (263)
T ss_dssp HHHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC--TTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC--CCcccchHHHHHHH
Confidence 34556666665321 22567999999999999999999998 5999999999998776433211 00111111000000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcee-EEecccccccCC-CCCCCCccEEEEecccCC----hhhHHHHHHHHHHhc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFS-MCGGDFVEVYSD-PSQVGAWDAVVTCFFIDT----AHNIVEYIEIISRIL 306 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls-~~~GDf~ely~~-~~~~~~fD~VvT~fFlDt----a~ni~~yl~~I~~~L 306 (394)
+...... .++... .....++. ++.+|+++.... +...++||+|++.+.|+. .+++...+++|+++|
T Consensus 116 ~~~~~~~-----~~~~~~---~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~L 187 (263)
T 2a14_A 116 ELEGNSG-----RWEEKE---EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 187 (263)
T ss_dssp HHTTCGG-----GHHHHH---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE
T ss_pred hcCCCCc-----chhhHH---HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 0000000 000000 00001233 788898773211 112468999999986654 367788999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccce-EEEEEEEcC
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFT-AFWTMRKKS 385 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~-~f~va~K~~ 385 (394)
||||++|-.+++.-.+.. .|........++.++|+++++++||++++.......|..+ + ..|.. .|++|||+.
T Consensus 188 KPGG~li~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~---~--~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 188 KPGGHLVTTVTLRLPSYM-VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVT---N--AANNGVCCIVARKKP 261 (263)
T ss_dssp EEEEEEEEEEESSCCEEE-ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTT---T--CCCCCEEEEEEEECC
T ss_pred CCCcEEEEEEeecCccce-eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccc---c--CCCCceEEEEEEecC
Confidence 999999975543211000 1110011235799999999999999999866433333221 1 23433 456899974
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=149.07 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=116.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..+++.|.+.++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 41 ~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 95 (242)
T 3l8d_A 41 STIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG-------------------- 95 (242)
T ss_dssp TTHHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--------------------
T ss_pred HHHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--------------------
Confidence 357888888776 4669999999999999999999999999999999986554110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...++.++.+|+.++. ...++||+|++...+...++...+++.++++|||||++|
T Consensus 96 ----------------------~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 150 (242)
T 3l8d_A 96 ----------------------EGPDLSFIKGDLSSLP---FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYAC 150 (242)
T ss_dssp ----------------------CBTTEEEEECBTTBCS---SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccCCceEEEcchhcCC---CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEE
Confidence 0123788999988763 346899999999888877889999999999999999998
Q ss_pred Ee--cCcchh----hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 314 NL--GPLLYH----FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 314 N~--GPLlyh----~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
-. +|.... +....+ .+.....++.+++.++++++||++++...
T Consensus 151 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 151 IAILGPTAKPRENSYPRLYG-KDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp EEEECTTCGGGGGGGGGGGT-CCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEcCCcchhhhhhhhhhcc-ccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 53 222111 111111 11123357999999999999999998663
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=154.70 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=99.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..||..++-.... . .. .....+ ....
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~---~--~~----~~~~~~-------~~~~------ 79 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE---Q--PH----ITSQGD-------FKVY------ 79 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCS---C--SE----EEEETT-------EEEE------
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccC---C--cc----cccccc-------cccc------
Confidence 567999999999999999999999999999999999776522110 0 00 000000 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCC-CCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQV-GAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~-~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...++.++.+|+.++.. .. ++||+|++...+. +.++...++++++++|||||+++-+. +.|... ...
T Consensus 80 -----~~~~v~~~~~d~~~l~~---~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~-~~~~~~-~~~ 149 (203)
T 1pjz_A 80 -----AAPGIEIWCGDFFALTA---RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT-LEYDQA-LLE 149 (203)
T ss_dssp -----ECSSSEEEEECCSSSTH---HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE-ESSCSS-SSS
T ss_pred -----cCCccEEEECccccCCc---ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE-EecCcc-ccC
Confidence 01247899999988632 22 6899999764433 23456789999999999999833211 112111 111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++ .+.++.+|+++++.+ ||+++..+
T Consensus 150 ~~---~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 150 GP---PFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp SC---CCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CC---CCCCCHHHHHHHhcC-CcEEEEec
Confidence 12 345899999999988 99988754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=155.31 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=122.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..|+ .|+|+|+|..|+..++..+.......++ -|++...++........ ++.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~ 128 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDW--SPVVTYVCDLEGNRMKG-----PEK 128 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCC--HHHHHHHHHHTTTCSCH-----HHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccc--hhhhhhhhcccccccch-----HHH
Confidence 567999999999999999999999 9999999999997766433211000000 00000000000000000 000
Q ss_pred CCCCCCCCCce-eEEecccccccC-CCCCCCCccEEEEecccC----ChhhHHHHHHHHHHhccCCcEEEEecCcchhhh
Q 016155 250 HPASAGITEGF-SMCGGDFVEVYS-DPSQVGAWDAVVTCFFID----TAHNIVEYIEIISRILKDGGVWINLGPLLYHFA 323 (394)
Q Consensus 250 ~p~~~~~~~~l-s~~~GDf~ely~-~~~~~~~fD~VvT~fFlD----ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~ 323 (394)
. .....++ .+..+|+.+... .+...++||+|++.+.+. ..+++..+|+.++++|||||++|-..++...+.
T Consensus 129 ~---~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 129 E---EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp H---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred H---HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 0 0001126 788899887532 111227899999988776 677889999999999999999996544321111
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEE-EEEEcC
Q 016155 324 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW-TMRKKS 385 (394)
Q Consensus 324 ~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~-va~K~~ 385 (394)
.. +........++.+++.++++++||++++.......|.... ..|...|+ +|+|+.
T Consensus 206 ~~-~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 206 MI-GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTT-----SNNEGLFSLVGRKPG 262 (265)
T ss_dssp EE-TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTT-----BCCCCEEEEEEECCC
T ss_pred Ec-CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccc-----cccceEEEEEecccc
Confidence 11 1111123467999999999999999998775555554322 34555555 677753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=154.98 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||||||+|+++..||++|+.|+|+|+|..|+..++-..+. .++ .+++.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~-----~~~----------------------~~~~~ 120 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL-----SYT----------------------EEPLA 120 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC-----CEE----------------------EEECT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc-----ccc----------------------ccccc
Confidence 567999999999999999999999999999999999766421110 000 00000
Q ss_pred CCC-C----CCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhh
Q 016155 251 PAS-A----GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFA 323 (394)
Q Consensus 251 p~~-~----~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~ 323 (394)
... . ....++.+.++|+.++.. ...++||+|+....+. ..++...|++.++++|||||+++-+.. .|...
T Consensus 121 ~~~~~~~~~~~~~~i~~~~~D~~~l~~--~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~-~~~~~ 197 (252)
T 2gb4_A 121 EIAGAKVFKSSSGSISLYCCSIFDLPR--ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL-SYDPT 197 (252)
T ss_dssp TSTTCEEEEETTSSEEEEESCTTTGGG--GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE-ECCTT
T ss_pred ccccccccccCCCceEEEECccccCCc--ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE-ecCCc
Confidence 000 0 011358999999998743 1137899999764433 234577899999999999999953210 11111
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 324 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 324 ~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+++ .+.++.+||.+++.. +|+++..+
T Consensus 198 -~~~g~---~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 198 -KHAGP---PFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp -SCCCS---SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred -cCCCC---CCCCCHHHHHHHhhC-CeEEEEEe
Confidence 11112 345899999999977 69998855
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=153.19 Aligned_cols=168 Identities=14% Similarity=0.053 Sum_probs=116.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+++.|...++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 39 ~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--------------------- 92 (263)
T 3pfg_A 39 DLAALVRRHSP-----KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN--------------------- 92 (263)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHhhCC-----CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---------------------
Confidence 46667776665 4579999999999999999999999999999999997655110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCChhhHHHHHHHHHHhccCCc
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F---lDta~ni~~yl~~I~~~LKpGG 310 (394)
.++.++.+|+.++.. .++||+|++.+ . +.+..++..+|+.++++|||||
T Consensus 93 -----------------------~~~~~~~~d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG 145 (263)
T 3pfg_A 93 -----------------------PDAVLHHGDMRDFSL----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145 (263)
T ss_dssp -----------------------TTSEEEECCTTTCCC----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECChHHCCc----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCc
Confidence 026788999887532 58899999876 4 4444678899999999999999
Q ss_pred EEEEe---cCcch---------------------hhhhc---------c----CCCC-------CccccCCHHHHHHHHH
Q 016155 311 VWINL---GPLLY---------------------HFADL---------Y----GQED-------EMSIELSLEDVKRVAL 346 (394)
Q Consensus 311 ~wIN~---GPLly---------------------h~~~~---------~----g~~~-------~~~ieLS~eEl~~ll~ 346 (394)
++|-- .|-.+ +.... + .+.. .....++.+|++++++
T Consensus 146 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~ 225 (263)
T 3pfg_A 146 VVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFT 225 (263)
T ss_dssp EEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHH
T ss_pred EEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHH
Confidence 99952 11111 00000 0 0000 0012468999999999
Q ss_pred hCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCcccc
Q 016155 347 HYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVTIV 389 (394)
Q Consensus 347 ~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~~~~ 389 (394)
++||+++.... . .-...+||++|+.....
T Consensus 226 ~aGF~v~~~~~---~-----------~~~~~~~va~K~a~~~~ 254 (263)
T 3pfg_A 226 AAGLSVEFMPG---G-----------PSGRGLFTGLPGAKGET 254 (263)
T ss_dssp HTTEEEEEESS---T-----------TTSSCEEEEEECC----
T ss_pred HCCCEEEEeeC---C-----------CCCceeEEEecCCCCcc
Confidence 99999987531 1 12456899999855443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=154.86 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=109.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|+++..||++ |+.|+|+|+|..||..|+-.+...
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~------------------------------ 119 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 119 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS------------------------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh------------------------------
Confidence 5779999999999999999986 779999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLL----- 319 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLl----- 319 (394)
....++.++.||+.++. .+.||+|++.+.|.. .++...+|++|+++|||||++|...+..
T Consensus 120 --------~~~~~v~~~~~D~~~~~-----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~ 186 (261)
T 4gek_A 120 --------KAPTPVDVIEGDIRDIA-----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK 186 (261)
T ss_dssp --------CCSSCEEEEESCTTTCC-----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHH
T ss_pred --------ccCceEEEeeccccccc-----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHH
Confidence 01234889999998863 256999998764432 3456689999999999999999642211
Q ss_pred --------hh-hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEE
Q 016155 320 --------YH-FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW 379 (394)
Q Consensus 320 --------yh-~~~~~g~~~-----------~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~ 379 (394)
|+ |....|..+ .....+|.++++++|+++||+.++... | .++-.=|
T Consensus 187 ~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~f-------------q-~~nF~~~ 252 (261)
T 4gek_A 187 VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWF-------------Q-CFNFGSL 252 (261)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEE-------------E-ETTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEE-------------E-eccEEEE
Confidence 11 111111000 011246899999999999999876431 1 1122338
Q ss_pred EEEEcCc
Q 016155 380 TMRKKSV 386 (394)
Q Consensus 380 va~K~~~ 386 (394)
||+|...
T Consensus 253 iA~K~~~ 259 (261)
T 4gek_A 253 VALKAED 259 (261)
T ss_dssp EEECCTT
T ss_pred EEEEcCC
Confidence 9999854
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-17 Score=144.58 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhcCccc----ChhHHh-hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 016155 128 DKVRCIIRNIVRDWAAE----GKTERD-QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 202 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~e----g~~ER~-~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S 202 (394)
+++..........|... .-..|. .....+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s 83 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGR-------QPERVLDLGCGEGWLLRALADRGIEAVGVDGD 83 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHT-------CCSEEEEETCTTCHHHHHHHTTTCEEEEEESC
T ss_pred HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcC-------CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC
Confidence 45555555556666542 111111 1122344444432 45799999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCC-CCCCcc
Q 016155 203 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS-QVGAWD 281 (394)
Q Consensus 203 ~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~-~~~~fD 281 (394)
..|+..++.. .+..+..+|+.++...+. ..++||
T Consensus 84 ~~~~~~a~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 84 RTLVDAARAA---------------------------------------------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHHHT---------------------------------------------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHHHHHh---------------------------------------------cccccchhhHHhhcccccccCCCcc
Confidence 9999655411 013456677766521111 235699
Q ss_pred EEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc----------c-C---C-CCCccccCCHHHHHHHHH
Q 016155 282 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----------Y-G---Q-EDEMSIELSLEDVKRVAL 346 (394)
Q Consensus 282 ~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~----------~-g---~-~~~~~ieLS~eEl~~ll~ 346 (394)
+|++.+.+. ..++..+++.++++|||||++|-..|..+..... + + . .+.....++.++++++++
T Consensus 119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (227)
T 3e8s_A 119 LICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197 (227)
T ss_dssp EEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHH
T ss_pred EEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHH
Confidence 999988777 6778899999999999999999643321111100 0 0 0 011123459999999999
Q ss_pred hCCCEEEEEe
Q 016155 347 HYGFEFEKEK 356 (394)
Q Consensus 347 ~~GF~ii~e~ 356 (394)
++||+++...
T Consensus 198 ~aGf~~~~~~ 207 (227)
T 3e8s_A 198 MAGLRLVSLQ 207 (227)
T ss_dssp HTTEEEEEEE
T ss_pred HcCCeEEEEe
Confidence 9999999855
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-17 Score=146.03 Aligned_cols=167 Identities=17% Similarity=0.091 Sum_probs=114.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
.+..+...++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+
T Consensus 33 ~~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---------------------- 85 (211)
T 3e23_A 33 TLTKFLGELP-----AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---------------------- 85 (211)
T ss_dssp HHHHHHTTSC-----TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcC-----CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----------------------
Confidence 4444444443 4679999999999999999999999999999999996554211
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wI 313 (394)
++.+..+|+.++. ..++||+|++...+... +++..+|+.++++|||||++|
T Consensus 86 -----------------------~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 138 (211)
T 3e23_A 86 -----------------------GRPVRTMLFHQLD----AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138 (211)
T ss_dssp -----------------------TSCCEECCGGGCC----CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------------CCceEEeeeccCC----CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence 1345667877753 36899999988655544 478899999999999999998
Q ss_pred EecCcchh-hhhccCCCCCccccCCHHHHHHHHHhCC-CEEEEEe-eccccCCCCcccccccccceEEEEEEEcCcc
Q 016155 314 NLGPLLYH-FADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 387 (394)
Q Consensus 314 N~GPLlyh-~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~e~-~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~~ 387 (394)
-..|.... ..+. .......++.++++++++++| |+++... .....|.. .+..+.++.++++..
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~--------~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 139 ASYKSGEGEGRDK---LARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQ--------ELAQFLHVSVRKPEL 204 (211)
T ss_dssp EEEECCSSCEECT---TSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTS--------CEEEEEEEEEECCCC
T ss_pred EEEcCCCcccccc---cchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCC--------CCceEEEEEEecCcc
Confidence 53221110 0000 111123579999999999999 9999855 33334433 223444555555443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=148.08 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=121.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
...|.+.++.. ++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-.+.
T Consensus 33 ~~~l~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------------- 88 (253)
T 3g5l_A 33 WHELKKMLPDF---NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------------------- 88 (253)
T ss_dssp HHHHHTTCCCC---TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------------
T ss_pred HHHHHHhhhcc---CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------------
Confidence 34455665532 678999999999999999999999 99999999999976552110
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..++.+..+|+.++. ...++||+|++...+...+++..+|++++++|||||++|-.
T Consensus 89 ---------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 89 ---------------------SPVVCYEQKAIEDIA---IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ---------------------CTTEEEEECCGGGCC---CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCeEEEEcchhhCC---CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 123788999988753 34689999999887776678899999999999999999853
Q ss_pred --cCcc-------hhhhhc-----------cCCC---------CCccccCCHHHHHHHHHhCCCEEEEEe--eccccCCC
Q 016155 316 --GPLL-------YHFADL-----------YGQE---------DEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTT 364 (394)
Q Consensus 316 --GPLl-------yh~~~~-----------~g~~---------~~~~ieLS~eEl~~ll~~~GF~ii~e~--~i~~~Y~~ 364 (394)
.|.. |.+... .... ....+..+.++++++++++||+++... ........
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~~~~ 224 (253)
T 3g5l_A 145 VEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKD 224 (253)
T ss_dssp EECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGGGSS
T ss_pred eCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCchhhcc
Confidence 2211 111100 0000 001123399999999999999999854 22222223
Q ss_pred CcccccccccceEEE--EEEEcC
Q 016155 365 NPRSMMQNRYFTAFW--TMRKKS 385 (394)
Q Consensus 365 d~~sm~~~~Y~~~f~--va~K~~ 385 (394)
...+....-.+.|. .++|..
T Consensus 225 -~~~~~~~~~~P~fl~~~~~~~~ 246 (253)
T 3g5l_A 225 -LPEMQDEYRRPMMLLISATKQE 246 (253)
T ss_dssp -CGGGGGGGTSCCEEEEEEEECC
T ss_pred -ChhHHHhhcCceEEEEEEeccc
Confidence 33344444455555 455543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=142.96 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------------------------------~----- 83 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---------------------------------H----- 83 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH---------------------------------C-----
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh---------------------------------C-----
Confidence 56899999999999999999999999999999999655411 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.++.++.+|+.++. ...++||+|++...+... .++..+++.++++|||||+++-..+..-.... ....
T Consensus 84 ------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~ 153 (203)
T 3h2b_A 84 ------PSVTFHHGTITDLS---DSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP-MYHP 153 (203)
T ss_dssp ------TTSEEECCCGGGGG---GSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE-ECCS
T ss_pred ------CCCeEEeCcccccc---cCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh-hhch
Confidence 12578889988763 235899999998766554 37899999999999999999853221111000 1111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
......++.++++++++++||+++....
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 1123457999999999999999998663
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=154.70 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=105.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..|++.|. .|+|+|+|..|+..++..+...
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 110 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 110 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 8999999999997666322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc----CChhhHHHHHHHHHHhccCCcEEEEecCcc------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRILKDGGVWINLGPLL------ 319 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl----Dta~ni~~yl~~I~~~LKpGG~wIN~GPLl------ 319 (394)
....++.++.+|+.++.. ...++||+|++.+.+ .+..++..+|+.++++|||||++|-..|..
T Consensus 111 -----~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 183 (298)
T 1ri5_A 111 -----KRRFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 183 (298)
T ss_dssp -----CCSSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCccEEEEECCcccccc--CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 011247889999887522 135789999988655 557788999999999999999999533321
Q ss_pred ----------hh------------------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 320 ----------YH------------------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 320 ----------yh------------------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
|. |.-...........++.++++++++++||++++....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred HccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 11 0000000000012468999999999999999986644
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=148.50 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=105.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|+++..|++.|+.|+|+|+|..|+..++-.+...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------------- 111 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS----------------------------------- 111 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS-----------------------------------
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc-----------------------------------
Confidence 459999999999999999999999999999999997665322100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
....++.+..+|+.++.. .++||+|++...+...+ +...+++.++++|||||++|-.... .....++
T Consensus 112 ---~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~- 180 (235)
T 3lcc_A 112 ---PKAEYFSFVKEDVFTWRP----TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP---ITDHVGG- 180 (235)
T ss_dssp ---GGGGGEEEECCCTTTCCC----SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC---CSCCCSC-
T ss_pred ---CCCcceEEEECchhcCCC----CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec---ccccCCC-
Confidence 011348899999988542 46899999887666444 7889999999999999999853221 1111111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
..+.++.+++.+++++.||++++.+..
T Consensus 181 --~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 181 --PPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp --SSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred --CCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 135689999999999999999986643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=144.24 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=111.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+...
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~---------------------------------- 82 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ---------------------------------- 82 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc----------------------------------
Confidence 5679999999999999999999999999999999997665322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-cc---CChhhHHHHHHHHHHhccCCcEEEEecCc--------
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI---DTAHNIVEYIEIISRILKDGGVWINLGPL-------- 318 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-Fl---Dta~ni~~yl~~I~~~LKpGG~wIN~GPL-------- 318 (394)
+.++.+..+|+.++.. . ++||+|++.. .+ .+.+++..+++.++++|||||++|---|.
T Consensus 83 ------~~~~~~~~~d~~~~~~---~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 152 (246)
T 1y8c_A 83 ------GLKPRLACQDISNLNI---N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152 (246)
T ss_dssp ------TCCCEEECCCGGGCCC---S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTT
T ss_pred ------CCCeEEEecccccCCc---c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhc
Confidence 0136788899887532 2 7899999876 44 34478899999999999999999842111
Q ss_pred --------------chhhhhc-------------cCCC------CCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 016155 319 --------------LYHFADL-------------YGQE------DEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 365 (394)
Q Consensus 319 --------------lyh~~~~-------------~g~~------~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d 365 (394)
.|..... .++. ......++.++++++++++||++++.... |..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~---~~~~ 229 (246)
T 1y8c_A 153 GNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC---YSNK 229 (246)
T ss_dssp TTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES---SSSC
T ss_pred CcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc---cccC
Confidence 0100000 0000 00012469999999999999999886532 2221
Q ss_pred cccccccccceEEEEEEEc
Q 016155 366 PRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 366 ~~sm~~~~Y~~~f~va~K~ 384 (394)
+. ...-...++||||+
T Consensus 230 ~~---~~~~~~~~~varK~ 245 (246)
T 1y8c_A 230 KV---EKFTERITYLVKLG 245 (246)
T ss_dssp BC---CTTCSEEEEEEEEC
T ss_pred cC---CCCceeEEEEEEec
Confidence 11 11124568899996
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=142.02 Aligned_cols=140 Identities=11% Similarity=-0.026 Sum_probs=106.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|++++ ..|+|+|+|..|+..++..+... .
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~-- 86 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL----------------------------G-- 86 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH----------------------------T--
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc----------------------------C--
Confidence 56799999999999999999997 89999999999997766332110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++.+..+|+.++. ...++||+|++...+...++...++++++++|||||+++-..+...... .
T Consensus 87 ---------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~- 151 (219)
T 3dh0_A 87 ---------LKNVEVLKSEENKIP---LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERD--K- 151 (219)
T ss_dssp ---------CTTEEEEECBTTBCS---SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCS--S-
T ss_pred ---------CCcEEEEecccccCC---CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccc--c-
Confidence 013788999988753 2457899999988777777888999999999999999996432211110 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.....++.+++.++++++||++++..
T Consensus 152 -~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 152 -GPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp -SCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred -CCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 1112346799999999999999998865
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=141.23 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+... .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------- 78 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE--------------------------N------- 78 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC--------------------------C-------
Confidence 4569999999999999999999999999999999997665322110 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.+..+|+.++. . .++||+|++...+.. .+++..+++.++++|||||+++-+.+..-. ....
T Consensus 79 ------~~~~~~~~~d~~~~~---~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~ 145 (199)
T 2xvm_A 79 ------LDNLHTRVVDLNNLT---F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA---DYPC 145 (199)
T ss_dssp ------CTTEEEEECCGGGCC---C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS---SSCC
T ss_pred ------CCCcEEEEcchhhCC---C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccC---CcCC
Confidence 013678899988752 2 578999998865443 347889999999999999998753322110 0011
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.....++.+|++++++. |++++.+
T Consensus 146 ~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 146 TVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp CSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred CCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 1112456799999999976 9998854
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=138.46 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=102.2
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------------- 74 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEK------------------------------------- 74 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999999999997665322110
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcc
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS 333 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ 333 (394)
+.++.+..+|+.++. ...++||+|++.+......+...+++.+.++|||||++|-..+.........+.+....
T Consensus 75 ---~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 148 (202)
T 2kw5_A 75 ---GVKITTVQSNLADFD---IVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLD 148 (202)
T ss_dssp ---TCCEEEECCBTTTBS---CCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGG
T ss_pred ---CCceEEEEcChhhcC---CCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcce
Confidence 012678888987753 23578999998765445677889999999999999999864332111110112122234
Q ss_pred ccCCHHHHHHHHHhCCCEEEEEe
Q 016155 334 IELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 334 ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..++.++|+++++ ||+++...
T Consensus 149 ~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 149 LLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp GCCCHHHHHHHCS--SSCEEEEE
T ss_pred eecCHHHHHHHhc--CceEEEEE
Confidence 5789999999997 99999855
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-16 Score=139.25 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=107.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.|..+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+.
T Consensus 33 ~~~~~l~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------- 88 (220)
T 3hnr_A 33 HYEDILEDVVNK-------SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------- 88 (220)
T ss_dssp THHHHHHHHHHT-------CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----------------
T ss_pred HHHHHHHHhhcc-------CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----------------
Confidence 344566666532 46799999999999999999999999999999999965542110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH--HHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE--YIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~--yl~~I~~~LKpG 309 (394)
.++.++.+|+.++.. . ++||+|++...+...++... +|++++++||||
T Consensus 89 --------------------------~~~~~~~~d~~~~~~---~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 89 --------------------------KEFSITEGDFLSFEV---P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp --------------------------TTCCEESCCSSSCCC---C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred --------------------------CceEEEeCChhhcCC---C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence 126788899888632 3 89999999877666555544 999999999999
Q ss_pred cEEEEecCcchhhhh---------ccCC-----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFAD---------LYGQ-----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~---------~~g~-----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+++-..|..-.... ..+- ........+.++++++++++||+++...
T Consensus 139 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 139 GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp CEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 999965433111000 0000 0001234589999999999999988766
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=145.22 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=107.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+.+.+...++.. .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-
T Consensus 28 ~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~------------------------ 81 (240)
T 3dli_A 28 VKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG------------------------ 81 (240)
T ss_dssp HHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT------------------------
T ss_pred HHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh------------------------
Confidence 555555554432 156799999999999999999999999999999999864430
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~wI 313 (394)
++.++.+|+.++.. +...++||+|++...+.... ++..++++++++|||||++|
T Consensus 82 -----------------------~~~~~~~d~~~~~~-~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (240)
T 3dli_A 82 -----------------------KFNVVKSDAIEYLK-SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137 (240)
T ss_dssp -----------------------TSEEECSCHHHHHH-TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEE
T ss_pred -----------------------hcceeeccHHHHhh-hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 03456677766421 23468999999987665444 67999999999999999998
Q ss_pred EecCcch---hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLY---HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLly---h~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-..|... .+.+.+ ..+.....++.+++.++++++||+++...
T Consensus 138 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 138 IESPNPTSLYSLINFY-IDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp EEEECTTSHHHHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred EEeCCcchhHHHHHHh-cCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 6433211 111111 11222346799999999999999998865
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-16 Score=141.20 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=119.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.|..+.+.+.+.++ ++.+|||+|||+|+++..|+++ ..|+|+|+|..|+..++-.+...
T Consensus 19 ~~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~--------------- 77 (243)
T 3d2l_A 19 PYPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMET--------------- 77 (243)
T ss_dssp CHHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhc---------------
Confidence 46668888888775 3579999999999999999999 99999999999997666322100
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhcc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f----FlDta~ni~~yl~~I~~~LK 307 (394)
+.++.+..+|+.++.. .++||+|++.+ ++.+..++..+++.++++||
T Consensus 78 -------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 128 (243)
T 3d2l_A 78 -------------------------NRHVDFWVQDMRELEL----PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128 (243)
T ss_dssp -------------------------TCCCEEEECCGGGCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE
T ss_pred -------------------------CCceEEEEcChhhcCC----CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC
Confidence 0126788899887532 37899999753 45556788899999999999
Q ss_pred CCcEEEEecCcc--------------------hhhhhccCC---------------CC---------CccccCCHHHHHH
Q 016155 308 DGGVWINLGPLL--------------------YHFADLYGQ---------------ED---------EMSIELSLEDVKR 343 (394)
Q Consensus 308 pGG~wIN~GPLl--------------------yh~~~~~g~---------------~~---------~~~ieLS~eEl~~ 343 (394)
|||++|-.-|.. +.|....+. .. .....++.+|+++
T Consensus 129 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (243)
T 3d2l_A 129 DGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYIT 208 (243)
T ss_dssp EEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHH
T ss_pred CCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHH
Confidence 999998411100 000000000 00 0012479999999
Q ss_pred HHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 344 VALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 344 ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
+++++||++++.... |...+. ...-...++||||+
T Consensus 209 ~l~~aGf~~~~~~~~---~~~~~~---~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 209 WLREAGFRVCAVTGD---FKSDAP---TETAERIFFVAEKI 243 (243)
T ss_dssp HHHHTTEEEEEEEET---TSSSCC---CTTCSEEEEEEEEC
T ss_pred HHHHCCCeEEEEecC---cccCCC---CCCceEEEEEEEeC
Confidence 999999999886421 222111 11124568899985
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=151.76 Aligned_cols=211 Identities=16% Similarity=0.104 Sum_probs=121.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccc-cccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWN-IYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~-i~Pfi~~~sn 233 (394)
++..|.+.++.. ..++.+|||+|||+|+++..++. .|..|+|+|+|..|+..++-.++.......+. ..+++.....
T Consensus 57 ~~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 57 KLRCLAQTFATG-EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHHTS-CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 344455544321 12567999999999997665555 37899999999999976653222100000000 0000000000
Q ss_pred ----CCCcccCccccccCCCCCCCCCCCCceeEEeccccc-ccCC--CCCCCCccEEEEecccCC----hhhHHHHHHHH
Q 016155 234 ----SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-VYSD--PSQVGAWDAVVTCFFIDT----AHNIVEYIEII 302 (394)
Q Consensus 234 ----~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e-ly~~--~~~~~~fD~VvT~fFlDt----a~ni~~yl~~I 302 (394)
......+++ .....++.+|+.+ +... ....++||+|++.+.+.. .+++..+|+++
T Consensus 136 ~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 201 (289)
T 2g72_A 136 KGECWQDKERQLR--------------ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHI 201 (289)
T ss_dssp SCCCHHHHHHHHH--------------HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHH
T ss_pred cccchhhhHHHHH--------------hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHH
Confidence 000000000 0014567778776 2110 123467999999986654 66889999999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec--cccCCCCcccccccccceEEEE
Q 016155 303 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPRSMMQNRYFTAFWT 380 (394)
Q Consensus 303 ~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i--~~~Y~~d~~sm~~~~Y~~~f~v 380 (394)
+++|||||++|-.+.+.-.+... +........++.+++.++++++||+++..... ...|.... ..|...|||
T Consensus 202 ~r~LkpGG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 275 (289)
T 2g72_A 202 TTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGV-----DDVKGVFFA 275 (289)
T ss_dssp HTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTT-----BCCCEEEEE
T ss_pred HHhcCCCCEEEEEEecCcceEEc-CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccc-----cCcceEEEE
Confidence 99999999999654321111110 11110123579999999999999999885532 24454322 567788998
Q ss_pred EEEcCcc
Q 016155 381 MRKKSVT 387 (394)
Q Consensus 381 a~K~~~~ 387 (394)
++|+...
T Consensus 276 ~~~~~~~ 282 (289)
T 2g72_A 276 WAQKVGL 282 (289)
T ss_dssp EEEECC-
T ss_pred EEecccc
Confidence 8887543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=142.86 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=106.7
Q ss_pred HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCc
Q 016155 159 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSD 237 (394)
Q Consensus 159 ~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~ 237 (394)
.|.+.++.. ++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-...
T Consensus 34 ~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----------------------- 87 (243)
T 3bkw_A 34 ALRAMLPEV---GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP----------------------- 87 (243)
T ss_dssp HHHHHSCCC---TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-----------------------
T ss_pred HHHHhcccc---CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc-----------------------
Confidence 344455432 567999999999999999999999 99999999999976551110
Q ss_pred ccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec-
Q 016155 238 SDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG- 316 (394)
Q Consensus 238 ~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G- 316 (394)
..++.+..+|+.++. ...++||+|++...+...++...++++++++|||||++|-..
T Consensus 88 -------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 88 -------------------DTGITYERADLDKLH---LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -------------------SSSEEEEECCGGGCC---CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------cCCceEEEcChhhcc---CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 013678889988753 235789999988777666778899999999999999998532
Q ss_pred -Ccc-------hhhhhc------cCC--C-----------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 317 -PLL-------YHFADL------YGQ--E-----------DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 317 -PLl-------yh~~~~------~g~--~-----------~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.. |.+... ... . .......+.+++.++++++||++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 146 HPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp CHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEE
T ss_pred CcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeec
Confidence 110 110000 000 0 001123589999999999999998854
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-16 Score=138.14 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++. . .
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-------~-----------------------~------- 88 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR-------H-----------------------G------- 88 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG-------G-----------------------C-------
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh-------c-----------------------C-------
Confidence 45699999999999999999999999999999999965541 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcc---h--h-h
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLL---Y--H-F 322 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLl---y--h-~ 322 (394)
..++.++.+|+.++. ..++||+|++...+...++ +..+++.++++|||||+++-..+.. + . +
T Consensus 89 ------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 158 (218)
T 3ou2_A 89 ------LDNVEFRQQDLFDWT----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQD 158 (218)
T ss_dssp ------CTTEEEEECCTTSCC----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------
T ss_pred ------CCCeEEEecccccCC----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhh
Confidence 023788999998873 2589999998876665554 5899999999999999998532210 0 0 0
Q ss_pred hhc----c-C-CCCCc-----cccCCHHHHHHHHHhCCCEEEEEe
Q 016155 323 ADL----Y-G-QEDEM-----SIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 323 ~~~----~-g-~~~~~-----~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
... . . ..... .-.++.+++.++++++||+++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 159 DSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp -----CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 000 0 0 00000 113699999999999999976654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=141.55 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------------------------- 86 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKER---------------------------------- 86 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 5679999999999999999999999999999999997666322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+.++.++.+|+.++.. .++||+|++.+ ..-..+++..+++.++++|||||++|-
T Consensus 87 ------~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 87 ------NLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp ------TCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCceEEEECChhhccc----CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 0126789999988632 36899998653 223456788999999999999999983
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=140.14 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=111.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
|..+.+.+.+.++.. ++ +|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 29 ~~~~~~~~~~~~~~~---~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 89 (219)
T 3dlc_A 29 YPIIAENIINRFGIT---AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA--------------- 89 (219)
T ss_dssp HHHHHHHHHHHHCCC---EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHhcCCC---CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc---------------
Confidence 445666666666532 33 9999999999999999998 789999999999997766332110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
....++.+..+|+.++. ...++||+|++...+...++...++++++++|||||+
T Consensus 90 -----------------------~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 90 -----------------------NLNDRIQIVQGDVHNIP---IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGK 143 (219)
T ss_dssp -----------------------TCTTTEEEEECBTTBCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred -----------------------cccCceEEEEcCHHHCC---CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence 01124788999998753 3468999999987666667888999999999999999
Q ss_pred EEEecCcchh---------hhhccCCC-C---CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYH---------FADLYGQE-D---EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh---------~~~~~g~~-~---~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++-..+..-. +....... . ...-.++.+++.++++++||++++..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 144 TYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 9854322100 00000000 0 00113478999999999999987654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=137.97 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+.+.|.+..+ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+
T Consensus 29 ~~~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~--------------------- 82 (239)
T 3bxo_A 29 DIADLVRSRTP-----EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL--------------------- 82 (239)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHhcC-----CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---------------------
Confidence 35666666553 5679999999999999999999999999999999996554110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCc
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f----FlDta~ni~~yl~~I~~~LKpGG 310 (394)
.++.+..+|+.++. . .++||+|++.+ ++...+++..+++.++++|||||
T Consensus 83 -----------------------~~~~~~~~d~~~~~---~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 135 (239)
T 3bxo_A 83 -----------------------PDATLHQGDMRDFR---L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG 135 (239)
T ss_dssp -----------------------TTCEEEECCTTTCC---C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECCHHHcc---c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCe
Confidence 02567888987753 2 47899999543 35556788999999999999999
Q ss_pred EEEE
Q 016155 311 VWIN 314 (394)
Q Consensus 311 ~wIN 314 (394)
++|-
T Consensus 136 ~l~~ 139 (239)
T 3bxo_A 136 VVVV 139 (239)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=136.13 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
..+...+.+.++.. .++.+|||+|||+|+++..|+++ |..|+|+|+|..|+..++..+..
T Consensus 29 ~~~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------- 90 (234)
T 3dtn_A 29 DDFYGVSVSIASVD--TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---------------- 90 (234)
T ss_dssp HHHHHHHHHTCCCS--CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS----------------
T ss_pred HHHHHHHHHHhhcC--CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc----------------
Confidence 34455566655522 26689999999999999999999 88999999999999765521100
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpG 309 (394)
..++.++.+|+.++.. .++||+|++...+....+ ...++++++++||||
T Consensus 91 -------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 141 (234)
T 3dtn_A 91 -------------------------NLKVKYIEADYSKYDF----EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKES 141 (234)
T ss_dssp -------------------------CTTEEEEESCTTTCCC----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred -------------------------CCCEEEEeCchhccCC----CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCC
Confidence 0147889999988642 289999998875554443 346999999999999
Q ss_pred cEEEEecCcc-------------hh-hhhccCC----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLL-------------YH-FADLYGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLl-------------yh-~~~~~g~----------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|++|...+.. |. +....+. .......++.+++.++++++||+.++..
T Consensus 142 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 142 GIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp EEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeee
Confidence 9999543211 10 0000010 0012335799999999999999999754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=136.35 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+... . +++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~--~~~-- 79 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSP--------------------------G--LNQ-- 79 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCC--------------------------S--CCS--
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc--------------------------C--Ccc--
Confidence 5679999999999999999999999999999999997766332110 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh---hHHHHHHHHHHhccCCcEEEEecCcc------hh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH---NIVEYIEIISRILKDGGVWINLGPLL------YH 321 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~---ni~~yl~~I~~~LKpGG~wIN~GPLl------yh 321 (394)
....++.+..+|+.++. ...++||+|++...+.... ....+++.++++|||||++|-..+.. +.
T Consensus 80 ----~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 152 (235)
T 3sm3_A 80 ----KTGGKAEFKVENASSLS---FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYR 152 (235)
T ss_dssp ----SSSCEEEEEECCTTSCC---SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHH
T ss_pred ----ccCcceEEEEecccccC---CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHH
Confidence 01235889999988753 3468999999886555443 34489999999999999998542210 00
Q ss_pred ------hhh--ccC----------CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 ------FAD--LYG----------QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ------~~~--~~g----------~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.. ..+ ..+.....++.++++++++++||+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 153 KRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 000 000 00011236799999999999999999855
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=142.71 Aligned_cols=142 Identities=13% Similarity=0.192 Sum_probs=103.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..|++++. .|+|+|+|..|+..++..+...
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------------- 125 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------------- 125 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc---------------------------------
Confidence 467999999999999999999976 8999999999997665322100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...++.++.+|+.++.. ..++||+|++...+...++ +..+|+.++++|||||++|-..|.... ...+.
T Consensus 126 ------~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~ 195 (241)
T 2ex4_A 126 ------GKRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILD 195 (241)
T ss_dssp ------GGGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-SEEEE
T ss_pred ------CCceEEEEEcChhhcCC---CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-cceec
Confidence 01236788999877532 3568999998876655444 668999999999999999964433221 00000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.....+..+.++++++++++||++++..
T Consensus 196 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 196 -DVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp -TTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 0112345599999999999999999865
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=143.53 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|++++..|+|+|+|..|+..++..+... .
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~------- 83 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN--------------------------G------- 83 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc--------------------------C-------
Confidence 5679999999999999999999999999999999997665322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccc---hhhhh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLL---YHFAD 324 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PLl---yh~~~ 324 (394)
..++.++.+|+.++. +.+++||+|++.+.+...++....|++++++|||||+++-.. |-. -.+..
T Consensus 84 ------~~~v~~~~~d~~~l~---~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~ 154 (260)
T 1vl5_A 84 ------HQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154 (260)
T ss_dssp ------CCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH
T ss_pred ------CCceEEEEecHHhCC---CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHH
Confidence 013788999988753 346899999998877666788899999999999999998532 211 00000
Q ss_pred ---ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 325 ---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 325 ---~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
... .+.....++.+++.++++++||+++..
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 155 YVEKER-DYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhc-CccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 000 111123579999999999999998874
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-16 Score=141.66 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.+...++.|.+.++.. ++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.....
T Consensus 20 ~~~~~~~~l~~~~~~~---~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------- 82 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL-------------- 82 (256)
T ss_dssp CCHHHHHHHHHHTCCC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred CCHHHHHHHHHhcCCC---CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------------
Confidence 3445666666666432 5679999999999999999987 889999999999997665322100
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
....++.+..+|+.++. . .++||+|++...+...+++..+|++++++|||||
T Consensus 83 ------------------------~~~~~v~~~~~d~~~~~---~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG 134 (256)
T 1nkv_A 83 ------------------------GVSERVHFIHNDAAGYV---A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 134 (256)
T ss_dssp ------------------------TCTTTEEEEESCCTTCC---C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE
T ss_pred ------------------------CCCcceEEEECChHhCC---c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCe
Confidence 01124788999998753 2 5789999987666555577899999999999999
Q ss_pred EEEEecCcchh------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 311 VWINLGPLLYH------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 311 ~wIN~GPLlyh------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+++-..|.... +..... .......++.+++.++++++||++++.
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 135 IMLIGEPYWRQLPATEEIAQACG-VSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEEEEEEETTCCSSHHHHHTTT-CSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEEEecCcccCCCChHHHHHHHh-cccccccCCHHHHHHHHHHCCCeeEEE
Confidence 99864432110 110000 011123579999999999999998764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=140.13 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..|+++|+. |+|+|+|..|+..++-.+..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 138 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc----------------------------------
Confidence 5779999999999999999999764 99999999999765522100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++.+..+|+.++. ...++||+|++...+... .++..+|+.++++|||||++|-..+..-.......
T Consensus 139 -------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 208 (254)
T 1xtp_A 139 -------MPVGKFILASMETAT---LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCC---CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------CCceEEEEccHHHCC---CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec
Confidence 023778899988753 235799999988766555 56889999999999999999964432110000000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
........+.++++++++++||++++..
T Consensus 209 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 1112446799999999999999998865
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=139.47 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=105.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-....
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 100 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG---------------------------------- 100 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc----------------------------------
Confidence 6779999999999999999998 99999999999999765521100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchh------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH------ 321 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh------ 321 (394)
..++.+..+|+.++. ...++||+|++...+... .+...++++++++|||||+++-..|....
T Consensus 101 -------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (266)
T 3ujc_A 101 -------NNKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170 (266)
T ss_dssp -------CTTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH
T ss_pred -------CCCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH
Confidence 023788999988752 346899999998776666 88999999999999999999964321110
Q ss_pred -hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 322 -FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 322 -~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
+.... .+.....++.+++.++++++||++++...
T Consensus 171 ~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 171 EFKEYV--KQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHH--HHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHH--hcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 11000 00012256999999999999999988653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=140.47 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=112.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+++.|.+.++.. ++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 49 ~~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 107 (273)
T 3bus_A 49 LTDEMIALLDVR---SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA------------------ 107 (273)
T ss_dssp HHHHHHHHSCCC---TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc------------------
Confidence 445555555432 5679999999999999999985 899999999999997665322110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.+..+|+.++. ...++||+|++...+...++...+|++++++|||||+++-
T Consensus 108 --------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 108 --------------------GLANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp --------------------TCTTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------CCCcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence 01124788999988753 3468999999988777777889999999999999999985
Q ss_pred ecCc----chhhh----hccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 315 LGPL----LYHFA----DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 315 ~GPL----lyh~~----~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..+. ..... +...........++.+++.++++++||+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 165 ADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 3221 11100 0000000012357999999999999999988553
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=136.34 Aligned_cols=174 Identities=19% Similarity=0.104 Sum_probs=117.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.|...++.|....| +.+|||+|||+|+++..|+++ +|+|+|..|+..++-.
T Consensus 34 ~~~~~~~~l~~~~~------~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------------- 84 (219)
T 1vlm_A 34 AYLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------------- 84 (219)
T ss_dssp HHHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------------------
T ss_pred hHHHHHHHHHHhCC------CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------------------
Confidence 35556777777764 458999999999999999987 9999999998654410
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
++.++.+|+.++. ...++||+|++...+...++...+++.+.++|||||+
T Consensus 85 ---------------------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 134 (219)
T 1vlm_A 85 ---------------------------GVFVLKGTAENLP---LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 134 (219)
T ss_dssp ---------------------------TCEEEECBTTBCC---SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred ---------------------------CCEEEEcccccCC---CCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcE
Confidence 1466778877653 3457899999887776667788999999999999999
Q ss_pred EEEecCcchh-----hhhc-cCCC-CCccccCCHHHHHHHHHhCCCEEEEEe--eccccCCCCccccccccc---ceEEE
Q 016155 312 WINLGPLLYH-----FADL-YGQE-DEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTTNPRSMMQNRY---FTAFW 379 (394)
Q Consensus 312 wIN~GPLlyh-----~~~~-~g~~-~~~~ieLS~eEl~~ll~~~GF~ii~e~--~i~~~Y~~d~~sm~~~~Y---~~~f~ 379 (394)
+|-..|.... +... .+.. ......++.+++.++++++||++++.. ....+|..+........+ ...++
T Consensus 135 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i 214 (219)
T 1vlm_A 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGEGAFVVI 214 (219)
T ss_dssp EEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCSCGGGCSSCCCCEESSSSSSEEEE
T ss_pred EEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCCCCCccccchhhhcCCCCCeEEEE
Confidence 9864332111 1100 0100 011234799999999999999998854 223344333322121222 34566
Q ss_pred EEEEc
Q 016155 380 TMRKK 384 (394)
Q Consensus 380 va~K~ 384 (394)
+|+|+
T Consensus 215 ~a~K~ 219 (219)
T 1vlm_A 215 RGTKK 219 (219)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 88875
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=140.89 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=105.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.+...
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 118 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV--------------------------------- 118 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS---------------------------------
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999999 999999999999997666332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---------hhHHHHHHHHHHhccCCcEEEEecCcch
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---------HNIVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta---------~ni~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
....++.+..+|+.++ .++||+|++...+... .+...+++++.++|||||+++-..+...
T Consensus 119 -----~~~~~v~~~~~d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 119 -----DSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp -----CCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred -----CCCCceEEEECCHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 1123478999999875 3789999988654433 5678999999999999999985322111
Q ss_pred hhh--hccC-----------------CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 321 HFA--DLYG-----------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 321 h~~--~~~g-----------------~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
... ...+ .-+ .....+.+++.++++++||+++........|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 188 DKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CccchhhccccccccccchHHHHHHhcCC-CCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 000 0000 001 1235689999999999999999876544444
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=140.88 Aligned_cols=136 Identities=11% Similarity=-0.011 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++...
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------------------------------- 77 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------------------------------- 77 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------------------------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999999 899999999999996554110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh-------
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH------- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh------- 321 (394)
.++.+..+|+.++. ..++||+|++...+...++...+|+.++++|||||+++-..|-.+.
T Consensus 78 ---------~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 144 (259)
T 2p35_A 78 ---------PNTNFGKADLATWK----PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAM 144 (259)
T ss_dssp ---------TTSEEEECCTTTCC----CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHH
T ss_pred ---------CCcEEEECChhhcC----ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHH
Confidence 12577889987753 2578999999887776678889999999999999999864331111
Q ss_pred --------hhhccCC-CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 322 --------FADLYGQ-EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 322 --------~~~~~g~-~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|...... .+.....++.+++.++++++||++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 186 (259)
T 2p35_A 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDV 186 (259)
T ss_dssp HHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEEEEEE
T ss_pred HHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCCceEE
Confidence 1110000 01112357999999999999998654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=127.83 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=97.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|++.|..|+|+|+|..|+..++..+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------------------------------------- 88 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------------------------------------- 88 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-------------------------------------
Confidence 5679999999999999999999999999999999986554111
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
.++.+..+|+.++. ...++||+|++. .++. ..++...+++.+.++|||||++|-..|.
T Consensus 89 -------~~~~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~--------- 149 (195)
T 3cgg_A 89 -------PEARWVVGDLSVDQ---ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA--------- 149 (195)
T ss_dssp -------TTSEEEECCTTTSC---CCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------
T ss_pred -------CCCcEEEcccccCC---CCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------
Confidence 01567788887752 235789999986 2332 3466789999999999999999842110
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-.++.+++.+++++.||++++..
T Consensus 150 -----~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 150 -----GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp -----TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred -----CCCcCHHHHHHHHHHcCCEEeeee
Confidence 123689999999999999998865
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=135.94 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=108.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+...|.+.++ .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 21 ~~~~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~---------------------- 74 (230)
T 3cc8_A 21 VNPNLLKHIK----KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL---------------------- 74 (230)
T ss_dssp CCHHHHTTCC----TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------------------
Confidence 3445555554 25679999999999999999999999999999999986544100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..+..+|+.++. .+...++||+|++...+...++...+++.++++|||||+++-.
T Consensus 75 ------------------------~~~~~~d~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 75 ------------------------DHVVLGDIETMD-MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp ------------------------SEEEESCTTTCC-CCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred ------------------------CcEEEcchhhcC-CCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 134566766531 1234578999998877766677889999999999999999964
Q ss_pred cCcchhhh-------hcc-----CC-CCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 316 GPLLYHFA-------DLY-----GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 316 GPLlyh~~-------~~~-----g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
.|....+. ... +. .+.....++.+++.++++++||++++...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 130 IPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp EECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 44321110 000 00 0111234799999999999999999866433
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=144.01 Aligned_cols=138 Identities=17% Similarity=0.075 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------------------------- 99 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------------------------------------- 99 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-------------------------------------
Confidence 5679999999999999999999999999999999996554110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcch---hh----h
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---HF----A 323 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLly---h~----~ 323 (394)
.++.+..+|+.++. . .++||+|++.+.+....+...++++++++|||||+++-..|..- .+ .
T Consensus 100 -------~~~~~~~~d~~~~~---~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 168 (279)
T 3ccf_A 100 -------PHLHFDVADARNFR---V-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALY 168 (279)
T ss_dssp -------TTSCEEECCTTTCC---C-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHH
T ss_pred -------CCCEEEECChhhCC---c-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHH
Confidence 12567888987753 2 47899999988776666788999999999999999985322110 00 0
Q ss_pred ---hccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 324 ---DLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 324 ---~~~g~----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...+. .+.....++.+++.++++++||+++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 169 NALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAA 208 (279)
T ss_dssp HHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEE
Confidence 00010 0011235699999999999999998744
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=141.46 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=83.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+.+..+.+.++. .+.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+...
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 127 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA------------------ 127 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhc------------------
Confidence 344444444442 3449999999999999999999999999999999997665322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
.+. ...++.++.+|+.++.. .++||+|++.+ ..-+.+++..+|+.++++|||||+
T Consensus 128 --------~~~----------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 185 (299)
T 3g2m_A 128 --------PAD----------VRDRCTLVQGDMSAFAL----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK 185 (299)
T ss_dssp --------CHH----------HHTTEEEEECBTTBCCC----SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------ccc----------cccceEEEeCchhcCCc----CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcE
Confidence 000 00247899999988532 58899888553 222344678999999999999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
+|-
T Consensus 186 l~~ 188 (299)
T 3g2m_A 186 FLL 188 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=141.55 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHH
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ 204 (394)
.+.......+...+..|... . .....+..+.+.|.+.++ ++.+|||+|||+|+++..|+++|+.|+|+|+|..
T Consensus 15 ~~~~~~~~~~a~~Yd~~~~~-~-~~~~~~~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~ 87 (260)
T 2avn_A 15 LRSWEFYDRIARAYDSMYET-P-KWKLYHRLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE 87 (260)
T ss_dssp CCHHHHHHHHHHHHGGGGCS-H-HHHHHHHHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred hhhcchhhHHHHHHHHhccc-c-chhHHHHHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH
Confidence 44555556666666666522 1 112234456677777765 4569999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEE
Q 016155 205 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 284 (394)
Q Consensus 205 ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv 284 (394)
|+..++-... . .+..+|+.++. ...++||+|+
T Consensus 88 ~l~~a~~~~~-------------------------------------------~--~~~~~d~~~~~---~~~~~fD~v~ 119 (260)
T 2avn_A 88 MLEVAREKGV-------------------------------------------K--NVVEAKAEDLP---FPSGAFEAVL 119 (260)
T ss_dssp HHHHHHHHTC-------------------------------------------S--CEEECCTTSCC---SCTTCEEEEE
T ss_pred HHHHHHhhcC-------------------------------------------C--CEEECcHHHCC---CCCCCEEEEE
Confidence 9965541100 0 14667776643 2367899999
Q ss_pred Eecc-cCChhhHHHHHHHHHHhccCCcEEEEecCcchh----------hhh-----ccC-----CCCC--ccccCCHHHH
Q 016155 285 TCFF-IDTAHNIVEYIEIISRILKDGGVWINLGPLLYH----------FAD-----LYG-----QEDE--MSIELSLEDV 341 (394)
Q Consensus 285 T~fF-lDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh----------~~~-----~~g-----~~~~--~~ieLS~eEl 341 (394)
+... +...+++..+|++++++|||||++|-..|..+. |.. ..+ ..+. ....++.+||
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDL 199 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGG
T ss_pred EcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHH
Confidence 8653 222245789999999999999999853332210 000 000 0000 0014688999
Q ss_pred HHHHHhCCCEEEEEe
Q 016155 342 KRVALHYGFEFEKEK 356 (394)
Q Consensus 342 ~~ll~~~GF~ii~e~ 356 (394)
.++ +||++++..
T Consensus 200 ~~l---aGf~~~~~~ 211 (260)
T 2avn_A 200 DSL---EGFETVDIR 211 (260)
T ss_dssp SSC---TTEEEEEEE
T ss_pred HHh---cCceEEEEE
Confidence 888 899998855
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=130.23 Aligned_cols=130 Identities=15% Similarity=0.023 Sum_probs=99.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++.. .
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 59 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---------------------------------F---- 59 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---------------------------------C----
Confidence 567999999999999999999998999999999998655411 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
.++.+..+| .. ...++||+|++...+...++...+++++.++|||||+++-..+... +.. ..+
T Consensus 60 -------~~v~~~~~d-~~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~---~~~-~~~ 122 (170)
T 3i9f_A 60 -------DSVITLSDP-KE-----IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE---NTG-IGP 122 (170)
T ss_dssp -------TTSEEESSG-GG-----SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS---CCS-SSS
T ss_pred -------CCcEEEeCC-CC-----CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc---ccc-cCc
Confidence 125677788 22 2357999999998887777889999999999999999986432211 100 011
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.....++.++++++++ ||++++..
T Consensus 123 ~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp CGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred hHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 1234589999999997 99999865
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=141.37 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=105.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 128 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------------------------------- 128 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999998 999999999999997665322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh-------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF------- 322 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~------- 322 (394)
....++.+..+|+.++. ..+++||+|++...+...++...+|++++++|||||+++-..|...+.
T Consensus 129 -----~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 200 (297)
T 2o57_A 129 -----GLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ 200 (297)
T ss_dssp -----TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGH
T ss_pred -----CCCcceEEEEcCcccCC---CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHH
Confidence 01124788999998753 346899999998777666778899999999999999999654322110
Q ss_pred --hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 323 --ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 323 --~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..... ..-..+.+++.++++++||++++..
T Consensus 201 ~~~~~~~----~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 201 PILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp HHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhc----CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00000 0123589999999999999998854
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-15 Score=138.41 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=107.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA-~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+.+.++. .++.+|||+|||+|.++..|+ ..|..|+|+|+|..|+..++-.+...
T Consensus 52 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------------------ 110 (287)
T 1kpg_A 52 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS------------------ 110 (287)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44444444432 256799999999999999999 66999999999999997665322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~w 312 (394)
....++.+..+|+.++ + ++||+|++...+... ++...+|++++++|||||++
T Consensus 111 --------------------~~~~~~~~~~~d~~~~---~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 111 --------------------ENLRSKRVLLAGWEQF---D---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp --------------------CCCSCEEEEESCGGGC---C---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCCeEEEECChhhC---C---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEE
Confidence 0112478899998764 2 789999988766554 67889999999999999999
Q ss_pred EEecCcchh-----------------hhhcc--CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 313 INLGPLLYH-----------------FADLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 313 IN~GPLlyh-----------------~~~~~--g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
+-..+.... +.+-. ..-+ .....+.+++.++++++||+++....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 165 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP-GGRLPSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEecCCCccccccccccccccccchhhhHHheeCC-CCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 853221100 00000 0000 012359999999999999999986643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=135.23 Aligned_cols=149 Identities=14% Similarity=0.212 Sum_probs=101.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL----------------------------RLPR 80 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC----------------------------CCCH
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------cCCc
Confidence 46799999999999999999987 58999999999997666322100 0000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchh--hhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYH--FAD 324 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh--~~~ 324 (394)
. ...++.++.+|+.... ...++||+|++...+.. .+++..+++.++++|||||++|-.....|. +..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 151 (217)
T 3jwh_A 81 N------QWERLQLIQGALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN 151 (217)
T ss_dssp H------HHTTEEEEECCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-
T ss_pred c------cCcceEEEeCCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc
Confidence 0 0114788999975432 23578999998876553 335689999999999999988853221121 100
Q ss_pred cc-CC--CCCccccCCHHHHH----HHHHhCCCEEEEEe
Q 016155 325 LY-GQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~-g~--~~~~~ieLS~eEl~----~ll~~~GF~ii~e~ 356 (394)
.. +. .......++.+++. +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 152 LPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp ----------CCSCBCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred cccccccccccccccCHHHHHHHHHHHHHHcCceEEEEe
Confidence 00 00 01234568999999 99999999987643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=140.70 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=104.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..+++.+... ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 110 ~~~~~~~~~~-------~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~----------------- 165 (286)
T 3m70_A 110 GDVVDAAKII-------SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKE----------------- 165 (286)
T ss_dssp HHHHHHHHHS-------CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhhcc-------CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 3466665542 4679999999999999999999999999999999997766332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~ 311 (394)
+.++.+..+|+.++.. .++||+|++...+. +.+++..+++.+.++|||||+
T Consensus 166 -----------------------~~~~~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 218 (286)
T 3m70_A 166 -----------------------NLNISTALYDINAANI----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGY 218 (286)
T ss_dssp -----------------------TCCEEEEECCGGGCCC----CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred -----------------------CCceEEEEeccccccc----cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 0137889999887532 58899999876443 446688999999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++-+.+..- .....+......++.++|++++.. |+++..
T Consensus 219 l~i~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 219 NLIVAAMST---DDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp EEEEEEBCC---SSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EEEEEecCC---CCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 764322110 011111112457899999999854 998874
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=135.78 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=109.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+..+.+.++.. .++.+|||+|||+|.++..|++++. .|+|+|+|..|+..++-.+...
T Consensus 33 ~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------ 92 (257)
T 3f4k_A 33 ATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA------------------ 92 (257)
T ss_dssp HHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc------------------
Confidence 444555555432 2567999999999999999999976 9999999999997665322110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.++.+|+.++. ...++||+|++...+... +..++++.++++|||||+++-
T Consensus 93 --------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~ 148 (257)
T 3f4k_A 93 --------------------NCADRVKGITGSMDNLP---FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAV 148 (257)
T ss_dssp --------------------TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------CCCCceEEEECChhhCC---CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEE
Confidence 01124788999997753 346899999988766655 678999999999999999986
Q ss_pred ecCcchhhh------hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFA------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~------~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..|...... ..... ...-..+.+++.++++++||+++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 149 SEASWFTSERPAEIEDFWMD--AYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp EEEEESSSCCCHHHHHHHHH--HCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred EEeeccCCCChHHHHHHHHH--hCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 443211100 00000 00114589999999999999998854
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=135.23 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=79.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+..... ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------------------~~~----- 107 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRK------------------------EPA----- 107 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTT------------------------SHH-----
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccc------------------------ccc-----
Confidence 457999999999999999999999999999999999766532110000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhh-------HHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHN-------IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~n-------i~~yl~~I~~~LKpGG~wIN 314 (394)
..++.+..+|+.++...-...++||+|++. ..+....+ ...+++.++++|||||++|-
T Consensus 108 ------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 108 ------FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp ------HHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ------cceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 013677888887753000135899999987 44444333 88999999999999999993
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-15 Score=135.67 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=105.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+.+|..|+|+|+|..|+..++..+... .
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------- 67 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK--------------------------G------- 67 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 6779999999999999999999999999999999997665322110 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhhh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFAD 324 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl------yh~~~ 324 (394)
..++.+..+|+.++. ...++||+|++.+.+....++..++++++++|||||+++-..+.. ..+..
T Consensus 68 ------~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 138 (239)
T 1xxl_A 68 ------VENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138 (239)
T ss_dssp ------CCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH
T ss_pred ------CCCeEEEecccccCC---CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH
Confidence 013778899987753 346899999988766666678899999999999999998532211 11100
Q ss_pred c---cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 L---YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~---~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. .. .+.....++.+++.++++++||+++...
T Consensus 139 ~~~~~~-~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 172 (239)
T 1xxl_A 139 HLNRLR-DPSHVRESSLSEWQAMFSANQLAYQDIQ 172 (239)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhc-cccccCCCCHHHHHHHHHHCCCcEEEEE
Confidence 0 00 1111235799999999999999988743
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-15 Score=137.05 Aligned_cols=156 Identities=11% Similarity=0.008 Sum_probs=109.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+..+.+.++.. .++.+|||+|||+|.++..||+++. .|+|+|+|..|+..++..+...
T Consensus 33 ~~~~~l~~l~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 92 (267)
T 3kkz_A 33 VTLKALSFIDNL--TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS------------------ 92 (267)
T ss_dssp HHHHHHTTCCCC--CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcccC--CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 444455555421 2678999999999999999999976 9999999999997666332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|+.++. ...++||+|++...+... +...+++.++++|||||+++-
T Consensus 93 --------------------~~~~~v~~~~~d~~~~~---~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 93 --------------------GLQNRVTGIVGSMDDLP---FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp --------------------TCTTTEEEEECCTTSCC---CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEE
T ss_pred --------------------CCCcCcEEEEcChhhCC---CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEE
Confidence 01134789999998753 236899999988655555 678999999999999999986
Q ss_pred ecCcchhh------hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 315 LGPLLYHF------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 315 ~GPLlyh~------~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..+..... ..... ....-..+.+++.++++++||+++....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 149 SECSWFTDERPAEINDFWM--DAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp EEEEESSSCCCHHHHHHHH--HHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeeecCCCChHHHHHHHH--HhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 44321100 00000 0001235899999999999999998653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=139.92 Aligned_cols=155 Identities=13% Similarity=-0.018 Sum_probs=108.8
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~ 236 (394)
+.|.+.++.. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 106 ~~l~~~l~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------- 163 (312)
T 3vc1_A 106 EFLMDHLGQA--GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL-------------------- 163 (312)
T ss_dssp HHHHTTSCCC--CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHhccC--CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--------------------
Confidence 4455555421 25779999999999999999999 999999999999997666322110
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 237 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
....++.+..+|+.++. ...++||+|++...+... +...+|++++++|||||++|-..
T Consensus 164 ------------------~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 164 ------------------RIDDHVRSRVCNMLDTP---FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ------------------TCTTTEEEEECCTTSCC---CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCceEEEECChhcCC---CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 01134789999998753 346899999988655555 38899999999999999999643
Q ss_pred CcchhhhhccCC------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 317 PLLYHFADLYGQ------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 317 PLlyh~~~~~g~------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+........... .....-..+.+++.++++++||+++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 222 GCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp EEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 321110000000 0000124689999999999999998855
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=132.34 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=101.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID----------------------------RLPE 80 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG----------------------------GSCH
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh----------------------------cccc
Confidence 46799999999999999999998 69999999999997666322110 0000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecCcchh--hhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYH--FAD 324 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~wIN~GPLlyh--~~~ 324 (394)
. ...++.++.+|+..+. ...++||+|++...+.... ++..+++.++++|||||++|......|. |..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 151 (219)
T 3jwg_A 81 M------QRKRISLFQSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN 151 (219)
T ss_dssp H------HHTTEEEEECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCC
T ss_pred c------cCcceEEEeCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcc
Confidence 0 0014788999985432 2357899999887655444 4579999999999999988743211110 100
Q ss_pred cc-CC--CCCccccCCHHHHH----HHHHhCCCEEEEEe
Q 016155 325 LY-GQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~-g~--~~~~~ieLS~eEl~----~ll~~~GF~ii~e~ 356 (394)
.. +. .......++.+++. +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 152 LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp T-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 00 00 01124567999999 88999999887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=137.01 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=111.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.+..+++.|.+..... .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.
T Consensus 22 ~~~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------- 82 (263)
T 2yqz_A 22 VAGQIATAMASAVHPK--GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA----------------- 82 (263)
T ss_dssp HHHHHHHHHHHHCCCS--SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHhhcCC--CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----------------
Confidence 3556777765422211 256799999999999999999999999999999999976552210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
....++.+..+|+.++. ...++||+|++.+.+...++...++++++++|||||+
T Consensus 83 -----------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 136 (263)
T 2yqz_A 83 -----------------------GVDRKVQVVQADARAIP---LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGA 136 (263)
T ss_dssp -----------------------TSCTTEEEEESCTTSCC---SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred -----------------------ccCCceEEEEcccccCC---CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcE
Confidence 00124788999987753 3467899999988777777888999999999999999
Q ss_pred EEEe-c-C---cc--hh--hh---hccCCC-CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 312 WINL-G-P---LL--YH--FA---DLYGQE-DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 312 wIN~-G-P---Ll--yh--~~---~~~g~~-~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++.. + + .. +. +. ...+.+ +.....++.+++.++++++||+++..
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 137 LLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 9853 1 1 10 00 00 011111 10122468899999999999997763
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-15 Score=140.32 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+.+.++. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 78 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 136 (318)
T 2fk8_A 78 KVDLNLDKLDL---KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI------------------ 136 (318)
T ss_dssp HHHHHHTTSCC---CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHhcCC---CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44445544432 25679999999999999999998 999999999999997766332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~w 312 (394)
....++.+..+|+.++ .++||+|++...+... ++...+++++.++|||||++
T Consensus 137 --------------------~~~~~v~~~~~d~~~~------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 137 --------------------DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp --------------------CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCceEEEECChHHC------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 0112478899998765 1689999988766554 67899999999999999999
Q ss_pred EEecCcchh---hh--------------hcc--CCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 313 INLGPLLYH---FA--------------DLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 313 IN~GPLlyh---~~--------------~~~--g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
+-..|.... .. +.. ..-+ .....+.+++.++++++||++++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 191 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred EEEEeccCCchhhhhccccccccccchhhHHHHhcCC-CCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence 853322111 00 000 0001 12235999999999999999987543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=138.60 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..+.+.|.+.++.. ++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++ +.
T Consensus 20 ~~~~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-------~~-------------- 75 (261)
T 3ege_A 20 IRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-------VH-------------- 75 (261)
T ss_dssp HHHHHHHHHHHCCC---TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-------CC--------------
T ss_pred HHHHHHHHHHhCCC---CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-------hc--------------
Confidence 34667777666532 5789999999999999999999999999999999974211 00
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.++.+..+|+.++. ...++||+|++.+.+...++...++++++++|| ||+++
T Consensus 76 ------------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~ 127 (261)
T 3ege_A 76 ------------------------PQVEWFTGYAENLA---LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIV 127 (261)
T ss_dssp ------------------------TTEEEECCCTTSCC---SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEE
T ss_pred ------------------------cCCEEEECchhhCC---CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEE
Confidence 03788999987753 346899999999877766888999999999999 99666
Q ss_pred Ee--cCc----chhhhhccC-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 314 NL--GPL----LYHFADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 314 N~--GPL----lyh~~~~~g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
-+ +|- .|...-... .........+.+++. +++++||+.+....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 128 LLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp EEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred EEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 42 221 111000000 000012245778899 99999999888653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=128.53 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=95.3
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAG 220 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~ 220 (394)
|+.....+.......+++.|.+.++ ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----- 82 (227)
T 1ve3_A 13 YTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS----- 82 (227)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----
Confidence 4433333333445567777777665 367999999999999999999999999999999999766532210
Q ss_pred ccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhHHHH
Q 016155 221 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNIVEY 298 (394)
Q Consensus 221 ~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~ni~~y 298 (394)
.+.++.++.+|+.++. ...++||+|++... +....+..++
T Consensus 83 -----------------------------------~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~ 124 (227)
T 1ve3_A 83 -----------------------------------RESNVEFIVGDARKLS---FEDKTFDYVIFIDSIVHFEPLELNQV 124 (227)
T ss_dssp -----------------------------------TTCCCEEEECCTTSCC---SCTTCEEEEEEESCGGGCCHHHHHHH
T ss_pred -----------------------------------cCCCceEEECchhcCC---CCCCcEEEEEEcCchHhCCHHHHHHH
Confidence 0023678899988753 23578999998765 5666778899
Q ss_pred HHHHHHhccCCcEEEEe
Q 016155 299 IEIISRILKDGGVWINL 315 (394)
Q Consensus 299 l~~I~~~LKpGG~wIN~ 315 (394)
++.++++|||||++|-.
T Consensus 125 l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 125 FKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 99999999999999854
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=138.37 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=110.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
+++.+.+.+... .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++.....
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~----------------- 69 (284)
T 3gu3_A 9 YVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----------------- 69 (284)
T ss_dssp HHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHhcc--CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-----------------
Confidence 455555555332 26789999999999999999998 78999999999999766532210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.+.++.+..+|+.++.. .++||+|++...+...++...+++.++++|||||++
T Consensus 70 -----------------------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 122 (284)
T 3gu3_A 70 -----------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI 122 (284)
T ss_dssp -----------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred -----------------------cCCceEEEEcchhhcCc----CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEE
Confidence 01147899999987532 468999999988777788889999999999999999
Q ss_pred EEecCcc----hhhhhccCC------------------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INLGPLL----YHFADLYGQ------------------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~GPLl----yh~~~~~g~------------------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+-..|.. ..+..+.+. .....-..+.+++.++++++||+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 123 ICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp EEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEE
T ss_pred EEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEE
Confidence 9665541 111000000 0000112356789999999999998763
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=122.48 Aligned_cols=123 Identities=17% Similarity=-0.002 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++| ..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 87 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-------------------------------- 87 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 56799999999999999999998 89999999999997766322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.. .++.++.+|+.+... ..+.||+|+....+. ++.++++.+.++|||||+++-..+.
T Consensus 88 ------~~-~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~---------- 144 (204)
T 3e05_A 88 ------VA-RNVTLVEAFAPEGLD---DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT---------- 144 (204)
T ss_dssp ------TC-TTEEEEECCTTTTCT---TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB----------
T ss_pred ------CC-CcEEEEeCChhhhhh---cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc----------
Confidence 00 237888999876543 236799998776444 6779999999999999999853221
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.-+.+++.+++++.||++..
T Consensus 145 ------~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 145 ------LDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp ------HHHHHHHHHHHHHTTCEEEE
T ss_pred ------cccHHHHHHHHHHCCCceeE
Confidence 12567888999999995443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=138.34 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=84.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.|.++.| .+.+|||+|||+|.++..|+.+|.+|+|+|+|..||..++ +
T Consensus 29 l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~-------~----------------- 79 (257)
T 4hg2_A 29 LFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL-------R----------------- 79 (257)
T ss_dssp HHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC-------C-----------------
T ss_pred HHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh-------h-----------------
Confidence 7788888766 4568999999999999999999999999999999984211 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.+..+|+.++. ..+++||+|++...+.-. +...++++++|+|||||+++-
T Consensus 80 ---------------------~~~v~~~~~~~e~~~---~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 80 ---------------------HPRVTYAVAPAEDTG---LPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ---------------------CTTEEEEECCTTCCC---CCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------------cCCceeehhhhhhhc---ccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEE
Confidence 013788999988763 357899999987655433 466899999999999999974
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=127.76 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=105.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh-HHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRL-a~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.|..+++.+...- ++.+|||+|||+|.+ ...++..|+.|+|+|+|..|+..++..+...
T Consensus 10 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------- 69 (209)
T 2p8j_A 10 QLYRFLKYCNESN------LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------------- 69 (209)
T ss_dssp HHHHHHHHHHHSS------SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHhccC------CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--------------
Confidence 3455666666432 456999999999998 6677888999999999999997665322100
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccC
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKD 308 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKp 308 (394)
+.++.+..+|+.++. ...++||+|++...+.. ..++..++++++++|||
T Consensus 70 --------------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 120 (209)
T 2p8j_A 70 --------------------------NFKLNISKGDIRKLP---FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKP 120 (209)
T ss_dssp --------------------------TCCCCEEECCTTSCC---SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred --------------------------CCceEEEECchhhCC---CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCC
Confidence 012567888987753 23578999997643332 47788999999999999
Q ss_pred CcEEEEec--C--cchh---------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 309 GGVWINLG--P--LLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 309 GG~wIN~G--P--Llyh---------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||+++-.. + ..|. |.......+.....++.+|+.+++...||...++.
T Consensus 121 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 121 GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 99998421 1 1110 00000011111235799999999999999887754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=140.68 Aligned_cols=152 Identities=18% Similarity=0.151 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++-.+...... ... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------------------~~g-~-- 138 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK---------------------FFG-S-- 138 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH---------------------HHS-S--
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh---------------------ccc-c--
Confidence 5679999999999999999986 679999999999997766332110000 000 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL----- 319 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl----- 319 (394)
....++.++.+|+.++... +...++||+|++...+...++...+|++++++|||||+++-..+..
T Consensus 139 -------~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 211 (383)
T 4fsd_A 139 -------PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS 211 (383)
T ss_dssp -------TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC
T ss_pred -------cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC
Confidence 0012478999999876211 3446899999999877777788899999999999999998532110
Q ss_pred hhhhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 320 YHFADL---YGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 320 yh~~~~---~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
-..... .+.. ..-.++.+++.++++++||++++.
T Consensus 212 ~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~aGF~~v~~ 248 (383)
T 4fsd_A 212 EAAQQDPILYGEC--LGGALYLEDFRRLVAEAGFRDVRL 248 (383)
T ss_dssp HHHHHCHHHHHTT--CTTCCBHHHHHHHHHHTTCCCEEE
T ss_pred HhHhhhHHHhhcc--cccCCCHHHHHHHHHHCCCceEEE
Confidence 000000 0000 122478899999999999987763
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=129.18 Aligned_cols=154 Identities=12% Similarity=-0.056 Sum_probs=103.0
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~ 236 (394)
...+..+++.. .++.+|||+|||+|+++..||++|..|+|+|+|..|+..++..+.
T Consensus 44 ~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---------------------- 99 (245)
T 3ggd_A 44 VVDLPRFELLF--NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---------------------- 99 (245)
T ss_dssp HHHHHHHTTTS--CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHhhcc--CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc----------------------
Confidence 34444444422 256789999999999999999999999999999999976552110
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCC-CC-CCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEE
Q 016155 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-PS-QVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 237 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~-~~-~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~w 312 (394)
..++.++.+|+.++... +. ....||+|++...+.... +...++++++++|||||++
T Consensus 100 --------------------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 159 (245)
T 3ggd_A 100 --------------------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159 (245)
T ss_dssp --------------------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred --------------------ccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence 01378889998875321 00 012489999886555444 7889999999999999987
Q ss_pred EEe--cCcc--h--hhhhccCCCC----------CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INL--GPLL--Y--HFADLYGQED----------EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~--GPLl--y--h~~~~~g~~~----------~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+-+ ++.- + ......++.+ ...-.++.+|+.+++ .||+++...
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~ 217 (245)
T 3ggd_A 160 YLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQG 217 (245)
T ss_dssp EEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEE
T ss_pred EEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEecc
Confidence 643 2110 0 0000011111 011247999999999 899999865
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=131.45 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=100.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..||.. |..|+|+|+|..|+..++-.+...
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------------------- 166 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH------------------------------- 166 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 5679999999999999999622 679999999999997665322100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEec----Cc--
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLG----PL-- 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wIN~G----PL-- 318 (394)
...+++.++.+|+.++. .. ++||+|++.. ++........+++.++++|||||++|-.. |.
T Consensus 167 -------~~~~~v~~~~~d~~~~~---~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 235 (305)
T 3ocj_A 167 -------ALAGQITLHRQDAWKLD---TR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235 (305)
T ss_dssp -------TTGGGEEEEECCGGGCC---CC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTC
T ss_pred -------CCCCceEEEECchhcCC---cc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccc
Confidence 11234889999998863 23 8999999864 34455555668999999999999999422 11
Q ss_pred -chhhh-hcc--------------CCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 319 -LYHFA-DLY--------------GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 319 -lyh~~-~~~--------------g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+.|. +.. .........++.+++.++++++||++++...
T Consensus 236 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp TTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 11110 000 0000011236999999999999999998663
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=137.10 Aligned_cols=198 Identities=14% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccc------------------------ccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETA------------------------GEWNI 224 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~------------------------~~~~i 224 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...... ....-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4679999999999999999998 789999999999998877543221000 00011
Q ss_pred ccccccccCCCCcccCccccccCCCCCC---CCCCCCceeEEecccccccC--CCCCCCCccEEEEeccc---C---Chh
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPA---SAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFI---D---TAH 293 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~---~~~~~~~ls~~~GDf~ely~--~~~~~~~fD~VvT~fFl---D---ta~ 293 (394)
||.....+ ..++..|..... ......++.|..+|+..... .+...++||+|++...+ . ...
T Consensus 126 ~p~~~~~~--------~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 126 FPASLTAS--------RGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccchhhhc--------cCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 12111000 011111221110 01223579999999975320 01246899999987644 2 344
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCccccCCHHHHHHHHHh--CCCEEEEEeeccccCCCC
Q 016155 294 NIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVALH--YGFEFEKEKTIETTYTTN 365 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~eEl~~ll~~--~GF~ii~e~~i~~~Y~~d 365 (394)
++.++|+.++++|||||++|- .|..|. |....... ....+.+..+++..+|.+ +||+.++.-... ..
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil-~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~-~~--- 272 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVL-EPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATP-HN--- 272 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE-ECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC---------
T ss_pred HHHHHHHHHHHHhCCCcEEEE-ecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccC-CC---
Confidence 788999999999999999995 333332 21110000 012457788999999998 999887644211 00
Q ss_pred cccccccccceEEEEEEEcC
Q 016155 366 PRSMMQNRYFTAFWTMRKKS 385 (394)
Q Consensus 366 ~~sm~~~~Y~~~f~va~K~~ 385 (394)
....+....++.+|+.
T Consensus 273 ----~~~g~~r~i~~~~k~~ 288 (292)
T 3g07_A 273 ----TSKGFQRPVYLFHKAR 288 (292)
T ss_dssp ----------CCCEEEECCC
T ss_pred ----CCCCccceEEEEEcCC
Confidence 1244556666777764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=131.67 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=98.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++..+....+. ++.+|||+|||+|.++..|++.+. .|+|+|+|..|+..++-....
T Consensus 48 ~~~~~l~~~~~~----~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~------------------ 105 (236)
T 1zx0_A 48 PYMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------------------ 105 (236)
T ss_dssp HHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG------------------
T ss_pred HHHHHHHhhcCC----CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHh------------------
Confidence 456666655432 567999999999999999999887 899999999999766621110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-eccc--C--ChhhHHHHHHHHHHhccC
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-CFFI--D--TAHNIVEYIEIISRILKD 308 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT-~fFl--D--ta~ni~~yl~~I~~~LKp 308 (394)
.+.++.++.+|+.++.. +..+++||+|++ .|-+ . ...+...++++++++|||
T Consensus 106 ----------------------~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp 162 (236)
T 1zx0_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------cCCCeEEEecCHHHhhc-ccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC
Confidence 01237889999988621 234689999998 4432 1 233455779999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEF 352 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~i 352 (394)
||+++-+....+. ......-........++....+.++||+.
T Consensus 163 gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 163 GGVLTYCNLTSWG--ELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp EEEEEECCHHHHH--HHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CeEEEEEecCcHH--HhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 9999854322111 10000000011223455667788999984
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-14 Score=125.54 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+++.|...++ ++.+|||+|||+|+++..|++.|. .|+|+|+|..|+..++..+...
T Consensus 49 ~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------- 106 (205)
T 3grz_A 49 LAMLGIERAMV-----KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN----------------- 106 (205)
T ss_dssp HHHHHHHHHCS-----SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcc-----CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 36666666543 467999999999999999999988 8999999999997666332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.. .++.+..+|+.+.. .++||+|++...+ +.+..+++.+.++|||||+++
T Consensus 107 ---------------------~~-~~v~~~~~d~~~~~-----~~~fD~i~~~~~~---~~~~~~l~~~~~~L~~gG~l~ 156 (205)
T 3grz_A 107 ---------------------GI-YDIALQKTSLLADV-----DGKFDLIVANILA---EILLDLIPQLDSHLNEDGQVI 156 (205)
T ss_dssp ---------------------TC-CCCEEEESSTTTTC-----CSCEEEEEEESCH---HHHHHHGGGSGGGEEEEEEEE
T ss_pred ---------------------CC-CceEEEeccccccC-----CCCceEEEECCcH---HHHHHHHHHHHHhcCCCCEEE
Confidence 00 12678899987742 3789999987544 346788999999999999998
Q ss_pred EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-.++. .-+.+++.+++++.||++++..
T Consensus 157 ~~~~~----------------~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 157 FSGID----------------YLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp EEEEE----------------GGGHHHHHHHHHHTTEEEEEEE
T ss_pred EEecC----------------cccHHHHHHHHHHcCCceEEee
Confidence 52211 1257889999999999998754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=129.82 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=104.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++-.+... .
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 85 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN--------------------------G----- 85 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------------------------T-----
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 6779999999999999999999 689999999999997665332110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC----cchhhhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP----LLYHFAD 324 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP----Llyh~~~ 324 (394)
..++.+..+|+.++. ...++||+|++...+...++...+++.++++|||||+++-..| ..++-..
T Consensus 86 --------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 154 (276)
T 3mgg_A 86 --------IKNVKFLQANIFSLP---FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154 (276)
T ss_dssp --------CCSEEEEECCGGGCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCC
T ss_pred --------CCCcEEEEcccccCC---CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCc
Confidence 013788999988753 3468999999998777777788999999999999999985322 1111000
Q ss_pred --------cc-C-CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 --------LY-G-QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 --------~~-g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.. . ......-.++.+++.++++++||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEe
Confidence 00 0 00000123567899999999999998855
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=141.98 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=107.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+.+.+.+.++.. ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-. . .
T Consensus 94 ~~~~~l~~~~~~~---~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-------~-~------------ 150 (416)
T 4e2x_A 94 MLARDFLATELTG---PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-------G-I------------ 150 (416)
T ss_dssp HHHHHHHHTTTCS---SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-------T-C------------
T ss_pred HHHHHHHHHhCCC---CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-------C-C------------
Confidence 3555565555422 567999999999999999999999999999999999655411 0 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+... ..+..++..++. ...++||+|++...+...+++..++++++++|||||+++-
T Consensus 151 ------------~~~~---------~~~~~~~~~~l~---~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 206 (416)
T 4e2x_A 151 ------------RVRT---------DFFEKATADDVR---RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVF 206 (416)
T ss_dssp ------------CEEC---------SCCSHHHHHHHH---HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------Ccce---------eeechhhHhhcc---cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 0000 011223333332 2247899999998888778899999999999999999996
Q ss_pred ecCcchhhhh--ccC-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 315 LGPLLYHFAD--LYG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 315 ~GPLlyh~~~--~~g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..|..-.... .+. ........++.+++.++++++||+++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 207 EDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 4443111100 000 001123457999999999999999998663
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=133.03 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..| ..|+|+|+|..||..|+-...... .. .+.+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~----~~---------------~~~~~------ 102 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN----SG---------------IKTKY------ 102 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC----C-------------------CC------
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcc----cc---------------ccccc------
Confidence 46799999999999777766665 789999999999988774321100 00 00000
Q ss_pred CCCCCCCCCceeEEeccc------ccccCCCCCCCCccEEEEeccc---CChhhHHHHHHHHHHhccCCcEEEEecCc--
Q 016155 250 HPASAGITEGFSMCGGDF------VEVYSDPSQVGAWDAVVTCFFI---DTAHNIVEYIEIISRILKDGGVWINLGPL-- 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf------~ely~~~~~~~~fD~VvT~fFl---Dta~ni~~yl~~I~~~LKpGG~wIN~GPL-- 318 (394)
-++.|.++|+ .++.. +...++||+|++.|.+ -..+++..+|++++++|||||++|-..|-
T Consensus 103 --------~~~~f~~~d~~~d~~~~~l~~-~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 103 --------YKFDYIQETIRSDTFVSSVRE-VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp --------CEEEEEECCTTSSSHHHHHHT-TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred --------cccchhhhhcccchhhhhhhc-cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 0134555555 22211 1235799999877533 22235789999999999999999953321
Q ss_pred --chhhh--------h---------------c----c---C-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 319 --LYHFA--------D---------------L----Y---G-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 319 --lyh~~--------~---------------~----~---g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+.+. + + + + ..+-...-.+.++|+++++++||+++....
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 174 KLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp HHTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHhcCCcccccccccccceeeeccccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 11110 0 0 0 0 000001246789999999999999998653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-13 Score=120.92 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=93.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..+|++|..|+|+|+|..|+..++..+...
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 100 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTY---------------------------------- 100 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999997766322110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
...+++.++.+|+.+... ..+.||+|+...-+ +.. +++.+.++|||||++|-..+.
T Consensus 101 ----g~~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~------------ 156 (204)
T 3njr_A 101 ----GLSPRMRAVQGTAPAALA---DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT------------ 156 (204)
T ss_dssp ----TCTTTEEEEESCTTGGGT---TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS------------
T ss_pred ----CCCCCEEEEeCchhhhcc---cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC------------
Confidence 011247889999988432 13579999865422 455 999999999999999853221
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-+.+++.+++++.||+++...
T Consensus 157 ----~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 157 ----LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp ----HHHHHHHHHHHHHHCSEEEEEE
T ss_pred ----cccHHHHHHHHHhCCCcEEEEE
Confidence 1146788888999999988754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-14 Score=128.60 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-. .
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 90 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---------------------------------A---- 90 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---------------------------------C----
Confidence 567999999999999999999999999999999999655411 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCC-CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQ-VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~-~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.++.++.+|+.+.. |.. .++||+|++. .+...+++.++++|||||+++..+
T Consensus 91 -------~~~~~~~~d~~~~~--~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~------------- 142 (226)
T 3m33_A 91 -------PHADVYEWNGKGEL--PAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG------------- 142 (226)
T ss_dssp -------TTSEEEECCSCSSC--CTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE-------------
T ss_pred -------CCceEEEcchhhcc--CCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC-------------
Confidence 12678889986532 234 6799999987 245578999999999999999211
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-.++.+++.+++.+.||+++...
T Consensus 143 ----~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 143 ----PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp ----SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred ----CcCCHHHHHHHHHHCCCeEEEEE
Confidence 13466789999999999988743
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=132.74 Aligned_cols=153 Identities=16% Similarity=0.029 Sum_probs=100.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
|+.+.+.+..+. ++.+|||+|||+|..+..|++.+ -.|+|+|+|..|+..++-....
T Consensus 48 ~~m~~~a~~~~~----~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~------------------ 105 (236)
T 3orh_A 48 PYMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------------------ 105 (236)
T ss_dssp HHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG------------------
T ss_pred HHHHHHHHhhcc----CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh------------------
Confidence 566666665542 67899999999999999999874 6899999999999776632110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-----ecccCChhhHHHHHHHHHHhccC
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-----CFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT-----~fFlDta~ni~~yl~~I~~~LKp 308 (394)
.+.++.++.||+.++.. +..+++||.|+. .+-+....+...++++++|+|||
T Consensus 106 ----------------------~~~~~~~~~~~a~~~~~-~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkP 162 (236)
T 3orh_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------CCCceEEEeehHHhhcc-cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCC
Confidence 01236778888766532 234688999862 22345567788999999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
||+|+-+...... +....... .......+.+...|.++||+++.
T Consensus 163 GG~l~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~L~eaGF~~~~ 206 (236)
T 3orh_A 163 GGVLTYCNLTSWG-ELMKSKYS-DITIMFEETQVPALLEAGFRREN 206 (236)
T ss_dssp EEEEEECCHHHHH-HHTTTTCS-CHHHHHHHHTHHHHHHHTCCGGG
T ss_pred CCEEEEEecCCch-hhhhhhhh-hhhhhhHHHHHHHHHHcCCeEEE
Confidence 9999854322111 00000000 01123445666677788998654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=119.36 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..+++.+..|+|+|+|..|+..++..+...
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------------------------- 78 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH---------------------------------- 78 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999997665322110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
....++.+..+|+.+... ..+.||+|++...+ +++..+++.+.++|||||+++-..+.
T Consensus 79 ----~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~------------ 136 (192)
T 1l3i_A 79 ----GLGDNVTLMEGDAPEALC---KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL------------ 136 (192)
T ss_dssp ----TCCTTEEEEESCHHHHHT---TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB------------
T ss_pred ----CCCcceEEEecCHHHhcc---cCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecC------------
Confidence 001237788899877322 12589999976544 35678999999999999999853221
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEEEEEEc
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e~-~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
.-+.+++.+++++.||++.... .....+.......+...+-...++++|+
T Consensus 137 ----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~k~ 187 (192)
T 1l3i_A 137 ----LETKFEAMECLRDLGFDVNITELNIARGRALDRGTMMVSRNPVALIYTGVS 187 (192)
T ss_dssp ----HHHHHHHHHHHHHTTCCCEEEEEEEEEEEEETTEEEEEECCCEEEEECCC-
T ss_pred ----cchHHHHHHHHHHCCCceEEEEEEcccCeEecCceeecCCCCEEEEEEecc
Confidence 1145788899999999655432 1111111111122333444445567665
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=125.22 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=98.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~ 236 (394)
...|...++.. ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+..
T Consensus 40 ~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------- 95 (216)
T 3ofk_A 40 TQLLRLSLSSG---AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR--------------------- 95 (216)
T ss_dssp HHHHHHHTTTS---SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT---------------------
T ss_pred HHHHHHHcccC---CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc---------------------
Confidence 33444444422 567999999999999999999999999999999999766522100
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc---CChhhHHHHHHHHHHhccCCcEEE
Q 016155 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 237 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl---Dta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.++.+|+.++. ..++||+|++...+ .....+..+|+.++++|||||++|
T Consensus 96 --------------------~~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 96 --------------------WSHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp --------------------CSSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred --------------------CCCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 013788999998864 25889999988544 444556788999999999999999
Q ss_pred EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 314 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 314 N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
-..|..-.... . ......+.+..++.. +|..++
T Consensus 152 ~~~~~~~~~~~-~------~~~~~~~~~~~~~~~-~~~~~e 184 (216)
T 3ofk_A 152 FGSARDATCRR-W------GHVAGAETVITILTE-ALTEVE 184 (216)
T ss_dssp EEEECHHHHHH-T------TCSCCHHHHHHHHHH-HSEEEE
T ss_pred EEecCCCcchh-h------hhhhhHHHHHHHHHh-hccceE
Confidence 53332211111 0 113567777777765 455544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=129.95 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=112.7
Q ss_pred CcchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHH----HHHHc--CCeE-
Q 016155 124 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLAL----EISHL--GFIS- 196 (394)
Q Consensus 124 ~~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~----eLA~~--Gf~v- 196 (394)
..|.+........+... +.. ...+...+...+..+...++. ..++.+|||+|||+|.++. .++.+ +..|
T Consensus 9 ~~d~~~y~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~--~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~ 84 (292)
T 2aot_A 9 FSDHGKYVESFRRFLNH-STE-HQCMQEFMDKKLPGIIGRIGD--TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84 (292)
T ss_dssp GGCHHHHHHHHHHHHTT-BSH-HHHHHHHHHHTHHHHSSSTTT--TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEE
T ss_pred cccHHHHHHHHHHHHHh-ccH-HHHHHHHHHHhchhHHhhccC--CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceee
Confidence 46777777777776654 221 122222222222222222211 1256799999999997654 34443 3433
Q ss_pred -EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---
Q 016155 197 -QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS--- 272 (394)
Q Consensus 197 -~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~--- 272 (394)
+|+|.|..||..++-.+... . .+.. -.+.+..++..++..
T Consensus 85 ~~~vD~S~~ml~~a~~~~~~~---~-------------------~~~~--------------v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 85 NEVVEPSAEQIAKYKELVAKT---S-------------------NLEN--------------VKFAWHKETSSEYQSRML 128 (292)
T ss_dssp EEEECSCHHHHHHHHHHHHTC---S-------------------SCTT--------------EEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHhc---c-------------------CCCc--------------ceEEEEecchhhhhhhhc
Confidence 99999999997665322100 0 0000 014455666554320
Q ss_pred CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cC---c--chhhh-hccCCCCCccccCCHHHHHHH
Q 016155 273 DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GP---L--LYHFA-DLYGQEDEMSIELSLEDVKRV 344 (394)
Q Consensus 273 ~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GP---L--lyh~~-~~~g~~~~~~ieLS~eEl~~l 344 (394)
.++.+++||+|++.+-|...+|+...|++++++|||||+++-. .+ . +|... ...+ .+.....++.+++.++
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 207 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP-QDDLCQYITSDDLTQM 207 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSC-CCTTCCCCCHHHHHHH
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhcc-CCCcccCCCHHHHHHH
Confidence 0123578999999888887788899999999999999999853 11 1 11111 1111 1111235799999999
Q ss_pred HHhCCCEEEEE
Q 016155 345 ALHYGFEFEKE 355 (394)
Q Consensus 345 l~~~GF~ii~e 355 (394)
++++||+++..
T Consensus 208 l~~aGf~~~~~ 218 (292)
T 2aot_A 208 LDNLGLKYECY 218 (292)
T ss_dssp HHHHTCCEEEE
T ss_pred HHHCCCceEEE
Confidence 99999998873
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=122.76 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=87.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
+..+.+.|.+.++ ++.+|||+|||+|+++..|+++|+ .|+|+|+|..|+..++..+..
T Consensus 29 ~~~~~~~l~~~~~-----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---------------- 87 (215)
T 2pxx_A 29 FSSFRALLEPELR-----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---------------- 87 (215)
T ss_dssp HHHHHHHHGGGCC-----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHhcC-----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----------------
Confidence 4456777777653 567999999999999999999998 899999999999765521100
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC---------------ChhhHH
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---------------TAHNIV 296 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD---------------ta~ni~ 296 (394)
..++.+..+|+.++. ...++||+|++...++ ...++.
T Consensus 88 -------------------------~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (215)
T 2pxx_A 88 -------------------------VPQLRWETMDVRKLD---FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139 (215)
T ss_dssp -------------------------CTTCEEEECCTTSCC---SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHH
T ss_pred -------------------------CCCcEEEEcchhcCC---CCCCcccEEEECcchhhhccccccccccccchhHHHH
Confidence 013678889988752 3457899999865432 134678
Q ss_pred HHHHHHHHhccCCcEEEEec
Q 016155 297 EYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 297 ~yl~~I~~~LKpGG~wIN~G 316 (394)
++++++.++|||||++|-..
T Consensus 140 ~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 140 QVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhCcCCCEEEEEe
Confidence 99999999999999999643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=124.68 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=94.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHH-HHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMI-CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~-~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..||++ |..|+|+|+|..||. +++...+....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~----------------------------- 77 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK----------------------------- 77 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG-----------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh-----------------------------
Confidence 5679999999999999999999 789999999999986 33321111000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-----ChhhHHHHHHHHHHhccCCcEEEE-ecCcchh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKDGGVWIN-LGPLLYH 321 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-----ta~ni~~yl~~I~~~LKpGG~wIN-~GPLlyh 321 (394)
....++.++.+|+.++.. ..+. |.|+..+-.. ..++...++++++++|||||+++- ++...|.
T Consensus 78 -------~~~~~v~~~~~d~~~l~~---~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 146 (218)
T 3mq2_A 78 -------GGLPNLLYLWATAERLPP---LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR 146 (218)
T ss_dssp -------TCCTTEEEEECCSTTCCS---CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT
T ss_pred -------cCCCceEEEecchhhCCC---CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc
Confidence 001247899999988532 3455 7776433110 112236899999999999999984 3322221
Q ss_pred hhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 322 FAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 322 ~~~-~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
... ..+..+........+++..++.++||+++..+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 147 PSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp TBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ccccccccCCccchHHHHHHHHHHHHHcCCCceeeeccc
Confidence 100 11111111112234568889999999999866443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-13 Score=119.48 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=91.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.|... .++.+|||+|||+|.++..|+ ..|+|+|+|..
T Consensus 58 ~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~------------------------------- 97 (215)
T 2zfu_A 58 IARDLRQR------PASLVVADFGCGDCRLASSIR---NPVHCFDLASL------------------------------- 97 (215)
T ss_dssp HHHHHHTS------CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS-------------------------------
T ss_pred HHHHHhcc------CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC-------------------------------
Confidence 55555532 145689999999999998884 78999999974
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
++.+..+|+.++. ...++||+|++.+.+.. .++..+++.++++|||||++|-.
T Consensus 98 -----------------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 98 -----------------------DPRVTVCDMAQVP---LEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp -----------------------STTEEESCTTSCS---CCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------CceEEEeccccCC---CCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEE
Confidence 0245667776642 23578999998877753 67889999999999999999864
Q ss_pred cCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 316 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 316 GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+. ....+.+++.++++++||+++...
T Consensus 151 ~~~--------------~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 151 EVS--------------SRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp ECG--------------GGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred EcC--------------CCCCCHHHHHHHHHHCCCEEEEEe
Confidence 321 012389999999999999998754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-13 Score=122.06 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||. .|..|+|+|+|..|+..++......
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 117 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-------------------------------- 117 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 467999999999999999994 5789999999999997776332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYG 327 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~g 327 (394)
.. .++.++.+|+.++...+...++||+|++..+ .++..+++.++++|||||+++-. |+.
T Consensus 118 ------~~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~--------- 177 (240)
T 1xdz_A 118 ------QL-ENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAAS--------- 177 (240)
T ss_dssp ------TC-SSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred ------CC-CCEEEEeccHHHhcccccccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCC---------
Confidence 00 1378899998876421112478999998663 45779999999999999999852 221
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..-..+++.+.+++.||++++...
T Consensus 178 ------~~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 178 ------AEEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ------chHHHHHHHHHHHHcCCeEeEEEE
Confidence 011246788889999999987653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=120.06 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|..|+|+|+|..|+..++..+...
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 67 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDL---------------------------------- 67 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999997776332210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD--------ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.. .++.++.+|+.++... ..++||+|+..+ |+. ...+....++.+.++|||||+++-
T Consensus 68 ----~~-~~v~~~~~~~~~l~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 68 ----GI-ENTELILDGHENLDHY--VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp ----TC-CCEEEEESCGGGGGGT--CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----CC-CcEEEEeCcHHHHHhh--ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 00 2367777887765321 257899998763 443 345667889999999999999985
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=113.85 Aligned_cols=125 Identities=11% Similarity=-0.036 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+...
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 72 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-------------------------------- 72 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 5679999999999999999998 789999999999997766332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
....++ ++.+|+.+... ...++||+|+..+.+.. .++++.+.++|||||+++-..+.
T Consensus 73 ------~~~~~~-~~~~d~~~~~~--~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~---------- 129 (178)
T 3hm2_A 73 ------GVSDRI-AVQQGAPRAFD--DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT---------- 129 (178)
T ss_dssp ------TCTTSE-EEECCTTGGGG--GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS----------
T ss_pred ------CCCCCE-EEecchHhhhh--ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec----------
Confidence 011236 67788765432 22378999998776655 57899999999999999853221
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-+.+++..++++.|+++....
T Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 130 ------VESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp ------HHHHHHHHHHHHHHCCEEEEEE
T ss_pred ------cccHHHHHHHHHHcCCeeEEEE
Confidence 1145677888899999887744
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=113.27 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|++.+..|+|+|+|..|+..++..+... .
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------- 81 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF--------------------------N------- 81 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999998899999999999997666322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
-.++.+..+|+.+... .++||+|++... .++.++++.+.++ |||+++-..+.
T Consensus 82 ------~~~~~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~------------ 133 (183)
T 2yxd_A 82 ------IKNCQIIKGRAEDVLD----KLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV------------ 133 (183)
T ss_dssp ------CCSEEEEESCHHHHGG----GCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC------------
T ss_pred ------CCcEEEEECCcccccc----CCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc------------
Confidence 0137889999887332 368999988766 5677899999998 99999853321
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-..+++.+++++.||++....
T Consensus 134 ----~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 134 ----LENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp ----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----cccHHHHHHHHHHcCCeEEEEE
Confidence 1135778899999999887643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=128.00 Aligned_cols=165 Identities=14% Similarity=0.070 Sum_probs=107.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+++.|....+ ++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-........
T Consensus 23 ~~~~~l~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------- 83 (313)
T 3bgv_A 23 EFLEKVRQKKK-----RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR-------------- 83 (313)
T ss_dssp HHHHHHHHTC-------CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS--------------
T ss_pred HHHHHhhhccC-----CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc--------------
Confidence 35555554432 4679999999999999999976 568999999999997666332110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCccEEEEeccc----CChhhHHHHHHHHHHhc
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRIL 306 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely---~~~~~~~~fD~VvT~fFl----Dta~ni~~yl~~I~~~L 306 (394)
... ....++.++.+|+.++. ..+...++||+|++.+.+ .+.+++..+|+.++++|
T Consensus 84 --~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L 145 (313)
T 3bgv_A 84 --RDS----------------EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERL 145 (313)
T ss_dssp --SCC-----------------CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE
T ss_pred --ccc----------------cccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHh
Confidence 000 01124788999988753 111124689999998765 45567789999999999
Q ss_pred cCCcEEEEecCcc-------------------hh--hhhc--cCC--C-------C---CccccCCHHHHHHHHHhCCCE
Q 016155 307 KDGGVWINLGPLL-------------------YH--FADL--YGQ--E-------D---EMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 307 KpGG~wIN~GPLl-------------------yh--~~~~--~g~--~-------~---~~~ieLS~eEl~~ll~~~GF~ 351 (394)
||||++|-..|-. |. |.+. .+. . + ...+.++.+++.++++++||+
T Consensus 146 kpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~ 225 (313)
T 3bgv_A 146 SPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMK 225 (313)
T ss_dssp EEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEE
T ss_pred CCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcE
Confidence 9999998532210 00 1110 000 0 0 012347899999999999999
Q ss_pred EEEEe
Q 016155 352 FEKEK 356 (394)
Q Consensus 352 ii~e~ 356 (394)
++...
T Consensus 226 ~v~~~ 230 (313)
T 3bgv_A 226 LVYKK 230 (313)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99855
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=127.42 Aligned_cols=152 Identities=12% Similarity=0.115 Sum_probs=105.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH---HcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEIS---HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA---~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
..+.+.|.++.+. ++.+|||+|||+|.++..|+ ..+..|+|+|+|..|+..++-.+...
T Consensus 23 ~~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------- 84 (299)
T 3g5t_A 23 SDFYKMIDEYHDG----ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-------------- 84 (299)
T ss_dssp HHHHHHHHHHCCS----CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhcC----CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc--------------
Confidence 3467777776542 57899999999999999999 56889999999999997766332210
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC------CCccEEEEecccCChhhHHHHHHHHHH
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV------GAWDAVVTCFFIDTAHNIVEYIEIISR 304 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~------~~fD~VvT~fFlDta~ni~~yl~~I~~ 304 (394)
+ ....++.++.+|+.++.. .. ++||+|++...+... ++..+++.+++
T Consensus 85 ----------------~-------~~~~~v~~~~~d~~~~~~---~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~ 137 (299)
T 3g5t_A 85 ----------------P-------DTYKNVSFKISSSDDFKF---LGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYA 137 (299)
T ss_dssp ----------------C--------CCTTEEEEECCTTCCGG---GCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHH
T ss_pred ----------------c-------CCCCceEEEEcCHHhCCc---cccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHH
Confidence 0 001247889999887542 23 789999998766655 88899999999
Q ss_pred hccCCcEEEEe---cCcchhhhhc--------cCCCCCcc-cc-CCHHHHHHHHHhCCC
Q 016155 305 ILKDGGVWINL---GPLLYHFADL--------YGQEDEMS-IE-LSLEDVKRVALHYGF 350 (394)
Q Consensus 305 ~LKpGG~wIN~---GPLlyh~~~~--------~g~~~~~~-ie-LS~eEl~~ll~~~GF 350 (394)
+|||||+++-. .|....+... ++...... .. ...+.++++++.+||
T Consensus 138 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 138 NLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196 (299)
T ss_dssp HEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCC
T ss_pred hcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhccCC
Confidence 99999999741 2221110000 01001111 22 567788999999999
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=119.18 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+||| +|.++..+|++ +..|+|+|+|..|+..++..+...
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 102 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN-------------------------------- 102 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh--------------------------------
Confidence 56799999999 99999999999 899999999999997766332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC------------------ChhhHHHHHHHHHHhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID------------------TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD------------------ta~ni~~yl~~I~~~LKpG 309 (394)
+.++.++.+|+..+.. ...++||+|++.. |.. ....+.++++.+.++||||
T Consensus 103 --------~~~v~~~~~d~~~~~~--~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 103 --------NSNVRLVKSNGGIIKG--VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp --------TCCCEEEECSSCSSTT--TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred --------CCCcEEEeCCchhhhh--cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 0036788899654432 2248899999762 211 1122478999999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+++-.-|-. .-..+++.+++++.||++...+
T Consensus 173 G~l~~~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 173 GKVALYLPDK---------------EKLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEEEEEEESC---------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEeccc---------------HhHHHHHHHHHHHcCCceEEEE
Confidence 9998532211 1246789999999999887654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-13 Score=124.44 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=100.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.|...+. ++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..... +
T Consensus 110 ~~~~l~~~~~-----~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~----~--------------- 165 (254)
T 2nxc_A 110 ALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N--------------- 165 (254)
T ss_dssp HHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T---------------
T ss_pred HHHHHHHhcC-----CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH----c---------------
Confidence 5566666543 567999999999999999999999999999999999776632110 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.+ . +.+..+|+.+... .++||+|+++... +.+..+++.+.++|||||++|-.
T Consensus 166 -------~~-------------~-v~~~~~d~~~~~~----~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 166 -------GV-------------R-PRFLEGSLEAALP----FGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp -------TC-------------C-CEEEESCHHHHGG----GCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CC-------------c-EEEEECChhhcCc----CCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEE
Confidence 00 1 5678888876432 3689999986543 34678999999999999999964
Q ss_pred cCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 316 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 316 GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|++ .-..+++++++++.||++++..
T Consensus 218 ~~~----------------~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 218 GIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred eec----------------cCCHHHHHHHHHHCCCEEEEEe
Confidence 432 1257899999999999998754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=122.15 Aligned_cols=149 Identities=9% Similarity=0.007 Sum_probs=99.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHH------HHHHHhhhhhccccccccccccccccccCCCCcccCc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYY------MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 241 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~------ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ql 241 (394)
++.+|||+|||+|.++..|+++ | ..|+|+|+|.. |+..++..+...
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------------------------- 97 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------------------------- 97 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-------------------------
Confidence 5679999999999999999998 4 89999999997 886555322100
Q ss_pred cccccCCCCCCCCCCCCceeEEecc-cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc--
Q 016155 242 RPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-- 318 (394)
Q Consensus 242 r~v~iPDv~p~~~~~~~~ls~~~GD-f~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL-- 318 (394)
....++.+..+| +.... .|...++||+|++...+....+...+++.+.++++|||+++.....
T Consensus 98 -------------~~~~~v~~~~~d~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 98 -------------PLGDRLTVHFNTNLSDDL-GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp -------------TTGGGEEEECSCCTTTCC-GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred -------------CCCCceEEEECChhhhcc-CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 011247788887 43321 1234589999998876655555667788888888889999853110
Q ss_pred -----ch----------hhhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 319 -----LY----------HFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 319 -----ly----------h~~~~-~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
.+ .+... ..........++.+++.++++++||++++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 164 PTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred CCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 01000 011111123579999999999999999987644
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=128.72 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC-HHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISH--LGFISQGNEFS-YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S-~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..||+ .|..|+|+|+| ..||..|.+....+.+. .
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-----------------------~---- 76 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG-----------------------G---- 76 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT-----------------------C----
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc-----------------------C----
Confidence 567999999999999999994 57789999999 88876553221111100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhHHHHHHHHHHhccCCcEEEEecCcchhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNIVEYIEIISRILKDGGVWINLGPLLYHF 322 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-----a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~ 322 (394)
-.++.+..+|+.++.. ...+.+|+|...|.... ..+..++|++++++|||||+++-.-.+--++
T Consensus 77 ---------~~~v~~~~~d~~~l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~ 145 (225)
T 3p2e_A 77 ---------LSNVVFVIAAAESLPF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY 145 (225)
T ss_dssp ---------CSSEEEECCBTTBCCG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--
T ss_pred ---------CCCeEEEEcCHHHhhh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 1247889999887621 11244555555442211 0112468999999999999998511111111
Q ss_pred hhc---cCCCCCccc-cCCHHHHHHHHHhCCCEEEEEeeccccCCCC----cccccccccceEEE
Q 016155 323 ADL---YGQEDEMSI-ELSLEDVKRVALHYGFEFEKEKTIETTYTTN----PRSMMQNRYFTAFW 379 (394)
Q Consensus 323 ~~~---~g~~~~~~i-eLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d----~~sm~~~~Y~~~f~ 379 (394)
... .+..+...- .+..+|+.+++.++||+++..+.....|... -.......|...|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~f~ 210 (225)
T 3p2e_A 146 EEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRLAFGRKRSFF 210 (225)
T ss_dssp ------------CCHHHHHSHHHHHHHHHHTCEEEEEEEECHHHHTTCCSHHHHHHHHSSCCCEE
T ss_pred hhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeecCHHHHHHHHHHHhcccCccchhHHH
Confidence 110 000110000 1122459999999999999866444444322 22233345555555
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=125.86 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|+++ +..++|+|+| .|+..++-.+...
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-------------------------------- 211 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-------------------------------- 211 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--------------------------------
Confidence 5679999999999999999998 7899999999 9997665322100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH----- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh----- 321 (394)
...+++.+..+|+.+... .+.||+|+....+... ++..++++.++++|||||+++-..+..-.
T Consensus 212 ------~~~~~v~~~~~d~~~~~~----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 281 (335)
T 2r3s_A 212 ------GVASRYHTIAGSAFEVDY----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP 281 (335)
T ss_dssp ------TCGGGEEEEESCTTTSCC----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS
T ss_pred ------CCCcceEEEecccccCCC----CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc
Confidence 011247899999987522 2349999987655433 56789999999999999988754332110
Q ss_pred -hhhccC----CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 -FADLYG----QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 -~~~~~g----~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+....+ ........++.+|++++++++||++++..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 282 PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 000000 00001346799999999999999998865
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=121.98 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhhcCcccCh----hHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEE
Q 016155 127 VDKVRCIIRNIVRDWAAEGK----TERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGN 199 (394)
Q Consensus 127 ~~kv~~~L~q~~RDWS~eg~----~ER~~~y-~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~ 199 (394)
.+++. .+.++...|..... .+.+..| ..+++.+.-..+ ....++.+|||+|||+|.++..||.. +..|+|+
T Consensus 33 ~~~~~-~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~-~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~v 110 (249)
T 3g89_A 33 LEAFS-RLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRL-PLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLV 110 (249)
T ss_dssp HHHHH-HHHHHHHHC----------CHHHHHHHHHHHHHGGGGS-SCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEE
T ss_pred HHHHH-HHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcc-cccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE
Confidence 34443 56666777865211 1111122 234444433222 11225679999999999999999987 6799999
Q ss_pred eCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCC
Q 016155 200 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 279 (394)
Q Consensus 200 D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~ 279 (394)
|+|..|+..++...... .. .++.++.+|+.++...+...++
T Consensus 111 D~s~~~~~~a~~~~~~~--------------------------------------~l-~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 111 DATRKKVAFVERAIEVL--------------------------------------GL-KGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp ESCHHHHHHHHHHHHHH--------------------------------------TC-SSEEEEECCHHHHTTSTTTTTC
T ss_pred ECCHHHHHHHHHHHHHh--------------------------------------CC-CceEEEECcHHHhhcccccCCC
Confidence 99999998776432210 00 1378899998876421112478
Q ss_pred ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 280 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 280 fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
||+|++..+ .++..+++.+.++|||||+++- .|+. ..-..+++...+++.||++++....
T Consensus 152 fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~---------------~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 152 YARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPR---------------VEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSC---------------CHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCC---------------cHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 999998654 3467899999999999999985 2321 0112345677788899999886544
Q ss_pred ccc
Q 016155 359 ETT 361 (394)
Q Consensus 359 ~~~ 361 (394)
..+
T Consensus 213 ~~p 215 (249)
T 3g89_A 213 QLP 215 (249)
T ss_dssp ECT
T ss_pred eCC
Confidence 333
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-13 Score=118.62 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=97.1
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
.+.|.+..+ ++.+|||+|||+|+++..| |+ .|+|+|+|..|+..++...
T Consensus 27 ~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---------------------- 76 (211)
T 2gs9_A 27 ERALKGLLP-----PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---------------------- 76 (211)
T ss_dssp HHHHHTTCC-----CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----------------------
T ss_pred HHHHHHhcC-----CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----------------------
Confidence 344555543 4679999999999999888 88 9999999999986554110
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.++.++.+|+.++. ...++||+|++...+...++..+.+++++++|||||++|-.
T Consensus 77 ----------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 77 ----------------------PEATWVRAWGEALP---FPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp ----------------------TTSEEECCCTTSCC---SCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------CCcEEEEcccccCC---CCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 12567788887653 34678999999888877778899999999999999999864
Q ss_pred cCcc---hh--hhh--ccCCCC-CccccCCHHHHHHHHHhCC
Q 016155 316 GPLL---YH--FAD--LYGQED-EMSIELSLEDVKRVALHYG 349 (394)
Q Consensus 316 GPLl---yh--~~~--~~g~~~-~~~ieLS~eEl~~ll~~~G 349 (394)
.|.. |. +.. ..+... .....+|.++++++++ |
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 132 VLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred ecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 3321 11 000 011111 1123579999999997 8
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-12 Score=115.80 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=85.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+.... +.+.+.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~---~~a~~~----------------------------- 104 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRER----------------------------- 104 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH---HHHHHC-----------------------------
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH---HHHhcC-----------------------------
Confidence 56799999999999999999874 68999999999873221 111100
Q ss_pred CCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
.++.++.+|+.+... .+. .++||+|++.. .+ ......++++++++|||||+++-. +.-...
T Consensus 105 ---------~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~-~~-~~~~~~~l~~~~r~LkpgG~l~i~----~~~~~~-- 166 (210)
T 1nt2_A 105 ---------NNIIPLLFDASKPWKYSGI-VEKVDLIYQDI-AQ-KNQIEILKANAEFFLKEKGEVVIM----VKARSI-- 166 (210)
T ss_dssp ---------SSEEEECSCTTCGGGTTTT-CCCEEEEEECC-CS-TTHHHHHHHHHHHHEEEEEEEEEE----EEHHHH--
T ss_pred ---------CCeEEEEcCCCCchhhccc-ccceeEEEEec-cC-hhHHHHHHHHHHHHhCCCCEEEEE----EecCCc--
Confidence 124556677765311 112 37899998763 22 233445699999999999999853 111100
Q ss_pred CCCCccccCCHHHHH--H--HHHhCCCEEEEEee
Q 016155 328 QEDEMSIELSLEDVK--R--VALHYGFEFEKEKT 357 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~--~--ll~~~GF~ii~e~~ 357 (394)
....+.+++. + .+++. |++++...
T Consensus 167 -----~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 167 -----DSTAEPEEVFKSVLKEMEGD-FKIVKHGS 194 (210)
T ss_dssp -----CTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred -----cccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence 1234556653 2 26777 99998764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=114.25 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+++| .|+|+|+|..|+..
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------------------------------------------ 59 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------------------------------------------ 59 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------------------------------------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------------------------------------------
Confidence 45699999999999999999999 99999999999831
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------ChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD--------ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
..++.++.+|+.+.. ..++||+|++.. |.. ...+..+.++.+.+.| |||+++-..+-
T Consensus 60 ------~~~~~~~~~d~~~~~----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~--- 125 (170)
T 3q87_B 60 ------HRGGNLVRADLLCSI----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE--- 125 (170)
T ss_dssp ------CSSSCEEECSTTTTB----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG---
T ss_pred ------ccCCeEEECChhhhc----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec---
Confidence 012567889988733 248899999874 321 1223457889999999 99999853210
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-..+++.+++++.||+.+...
T Consensus 126 -------------~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 126 -------------ANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp -------------GGCHHHHHHHHHHTTCEEEEEE
T ss_pred -------------CCCHHHHHHHHHHCCCcEEEEE
Confidence 1267899999999999988744
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=123.83 Aligned_cols=123 Identities=15% Similarity=0.016 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+... +
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------------------------~- 159 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-----------------------------Y- 159 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----------------------------S-
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------C-
Confidence 5679999999999999999998 789999999999997665322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...++.+..+|+.+.. ..++||+|++ ..++..++++.+.++|||||+++-..|..
T Consensus 160 --------g~~~v~~~~~d~~~~~----~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------- 214 (275)
T 1yb2_A 160 --------DIGNVRTSRSDIADFI----SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF-------- 214 (275)
T ss_dssp --------CCTTEEEECSCTTTCC----CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH--------
T ss_pred --------CCCcEEEEECchhccC----cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH--------
Confidence 0023788899988732 2478999987 23345688999999999999998644321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-..+++.+.+++.||+.++..
T Consensus 215 --------~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 215 --------DQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp --------HHHHHHHHHSGGGTEEEEEEE
T ss_pred --------HHHHHHHHHHHHCCCeEEEEE
Confidence 134677888889999988743
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=120.71 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=100.5
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
.|+..+..+...+.. .++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+...
T Consensus 77 ~~~~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------ 141 (255)
T 3mb5_A 77 VHPKDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------------ 141 (255)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------------
T ss_pred ccHhHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------------
Confidence 345555566555542 25779999999999999999999 789999999999997766332110
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
...+++.+..+|+.+.. ..++||+|+.. .++..++++.+.++|||
T Consensus 142 --------------------------~~~~~v~~~~~d~~~~~----~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~ 186 (255)
T 3mb5_A 142 --------------------------GFDDRVTIKLKDIYEGI----EEENVDHVILD-----LPQPERVVEHAAKALKP 186 (255)
T ss_dssp --------------------------TCTTTEEEECSCGGGCC----CCCSEEEEEEC-----SSCGGGGHHHHHHHEEE
T ss_pred --------------------------CCCCceEEEECchhhcc----CCCCcCEEEEC-----CCCHHHHHHHHHHHcCC
Confidence 01123788999998753 25789999862 23456789999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC--CEEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKE 355 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G--F~ii~e 355 (394)
||+++-+.|.. -..+++.+.+++.| |..++.
T Consensus 187 gG~l~~~~~~~----------------~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 187 GGFFVAYTPCS----------------NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEEEEEEESSH----------------HHHHHHHHHHHHTGGGBSCCEE
T ss_pred CCEEEEEECCH----------------HHHHHHHHHHHHcCCCccccEE
Confidence 99999654421 13567888899999 987763
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=130.47 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=85.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+.+.|.+..+. .++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..++..++..
T Consensus 51 ~~~~i~~~~~~---~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~------------------ 108 (376)
T 3r0q_C 51 YFNAVFQNKHH---FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN------------------ 108 (376)
T ss_dssp HHHHHHTTTTT---TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT------------------
T ss_pred HHHHHHhcccc---CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc------------------
Confidence 44555444322 2577999999999999999999999 99999999 9997666433210
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
...+++.++.+|+.++.. .++||+|++. +|+.....+..+++.++++|||||+
T Consensus 109 --------------------~~~~~v~~~~~d~~~~~~----~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 164 (376)
T 3r0q_C 109 --------------------NLDHIVEVIEGSVEDISL----PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164 (376)
T ss_dssp --------------------TCTTTEEEEESCGGGCCC----SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred --------------------CCCCeEEEEECchhhcCc----CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeE
Confidence 011347899999988643 2789999984 4677667788899999999999999
Q ss_pred EE
Q 016155 312 WI 313 (394)
Q Consensus 312 wI 313 (394)
+|
T Consensus 165 li 166 (376)
T 3r0q_C 165 MY 166 (376)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-12 Score=114.71 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..++-.. ..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~---~~------------------------------ 120 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC---AE------------------------------ 120 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT---TT------------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHh---hc------------------------------
Confidence 5679999999999999999998 5 68999999999996554211 00
Q ss_pred CCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++.++.+|+.+... .+.. ++||+|+.. +........+++.+.++|||||+++-. +.......
T Consensus 121 --------~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~----~~~~~~~~ 185 (230)
T 1fbn_A 121 --------RENIIPILGDANKPQEYANIV-EKVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIA----IKARSIDV 185 (230)
T ss_dssp --------CTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCS
T ss_pred --------CCCeEEEECCCCCcccccccC-ccEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEE----EecCCCCC
Confidence 0236778888876210 1122 689999822 222323467899999999999999853 11111100
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+ .-.+..+++. ++++.||++++..
T Consensus 186 ~~~--~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 186 TKD--PKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp SSC--HHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred CCC--HHHhhHHHHH-HHHHCCCEEEEEE
Confidence 111 1134558888 8889999988755
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=112.92 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=88.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|.++..|+.. +..|+|+|+|..|+..++..+...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------------- 112 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL--------------------------------- 112 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------
Confidence 569999999999999999987 789999999999997666332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYGQ 328 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~g~ 328 (394)
. ..++.+..+|+.++.. .++||+|++..+ .++..+++.+.++|||||+++-. |+
T Consensus 113 -----~-~~~v~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~----------- 167 (207)
T 1jsx_A 113 -----K-LENIEPVQSRVEEFPS----EPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQ----------- 167 (207)
T ss_dssp -----T-CSSEEEEECCTTTSCC----CSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESS-----------
T ss_pred -----C-CCCeEEEecchhhCCc----cCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCC-----------
Confidence 0 0126788999887532 478999986543 45678999999999999999852 21
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...+++.+++. ||++++..
T Consensus 168 -------~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 168 -------MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -------CCHHHHHTSCT--TEEEEEEE
T ss_pred -------CchHHHHHHhc--CCceeeee
Confidence 24567777664 99988754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=113.44 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..+.-.. .+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~---~~----------------------------- 120 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV---EE----------------------------- 120 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH---SS-----------------------------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHH---hc-----------------------------
Confidence 5679999999999999999987 3 69999999999985443211 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++.++.+|+.+........++||+|++... .......+++.++++|||||+++-. +.......
T Consensus 121 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~----~~~~~~~~ 185 (227)
T 1g8a_A 121 ---------RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA----VKSRSIDV 185 (227)
T ss_dssp ---------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCT
T ss_pred ---------cCCCEEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE----EecCCCCC
Confidence 02367888998773210112358999996543 2222345599999999999999853 21111100
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..+ .-.+..+++..+ .+. |++++...
T Consensus 186 ~~~--~~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 186 TKE--PEQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp TSC--HHHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred CCC--hhhhhHHHHHHH-Hhh-ceeeeEec
Confidence 111 125667888888 677 99987654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-12 Score=121.83 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=100.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..|+++ +..++++|+ ..|+..++..+...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------------------------------- 225 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--------------------------------- 225 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc---------------------------------
Confidence 679999999999999999998 678999999 77886665322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc--------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL-------- 319 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLl-------- 319 (394)
...+++.+..+||.+... ...+.||+|+....+. ..++....++.++++|||||++|-..+..
T Consensus 226 -----~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~ 298 (352)
T 3mcz_A 226 -----DLGGRVEFFEKNLLDARN--FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA 298 (352)
T ss_dssp -----TCGGGEEEEECCTTCGGG--GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH
T ss_pred -----CCCCceEEEeCCcccCcc--cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc
Confidence 012348899999987531 0135699999887654 33456899999999999999998543211
Q ss_pred hh-hhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 320 YH-FADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 320 yh-~~~~-~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+. +.+. .........+.+.+|++++++++||++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 00 0000 000000134689999999999999999974
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-12 Score=122.45 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=104.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+..|.+.++. .+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 178 ~~~~l~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----------------- 236 (359)
T 1x19_A 178 AIQLLLEEAKL---DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----------------- 236 (359)
T ss_dssp HHHHHHHHCCC---TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-----------------
T ss_pred hHHHHHHhcCC---CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-----------------
Confidence 34455555542 25679999999999999999998 679999999 99987665322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~ 311 (394)
...+++.+..+||.+... ..+|+|+....+...++ ..+.|++++++|||||+
T Consensus 237 ---------------------~~~~~v~~~~~d~~~~~~-----~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~ 290 (359)
T 1x19_A 237 ---------------------GVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGR 290 (359)
T ss_dssp ---------------------TCTTTEEEEECCTTTSCC-----CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred ---------------------CCCCCEEEEeCccccCCC-----CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCE
Confidence 011247899999987521 22399998876654433 78999999999999999
Q ss_pred EEEecCcc-------hh-hhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLL-------YH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLl-------yh-~~~~---~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|-+.+.. +. +... .+........++.+|++++++++||++++..
T Consensus 291 l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~ 346 (359)
T 1x19_A 291 LLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 346 (359)
T ss_dssp EEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEE
T ss_pred EEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEE
Confidence 97432111 00 0000 0100000112899999999999999998865
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=126.25 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..|+++ +..++++|+ ..|+..++-.+..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------- 224 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------------------------------- 224 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT---------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh---------------------------------
Confidence 4579999999999999999995 678999999 9998766522110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH----- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh----- 321 (394)
.....++++..+||.+... |. .+.||+|+....|. ..++....|++++++|||||++|-..+..-.
T Consensus 225 -----~~~~~~v~~~~~d~~~~~~-~~-p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (363)
T 3dp7_A 225 -----LSGSERIHGHGANLLDRDV-PF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYET 297 (363)
T ss_dssp -----CTTGGGEEEEECCCCSSSC-CC-CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHH
T ss_pred -----cCcccceEEEEccccccCC-CC-CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccc
Confidence 0112358999999987420 11 26899999887765 4455778999999999999999854322100
Q ss_pred --h----hhc-c-CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 --F----ADL-Y-GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 --~----~~~-~-g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+ ... . ........+.+.+|++++++++||++++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCC
T ss_pred hhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 0 000 0 000111346799999999999999998754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=114.88 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=84.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+++.|....+. ++.+|||+|||+|.++.+++.+|. .|+|+|+|..|+..++..+...
T Consensus 33 l~~~l~~~~~~----~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 90 (189)
T 3p9n_A 33 LFNIVTARRDL----TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL------------------ 90 (189)
T ss_dssp HHHHHHHHSCC----TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHhccCC----CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------------------
Confidence 44555544321 567999999999999999999987 6999999999997766332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHH--hccCCcE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISR--ILKDGGV 311 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~ni~~yl~~I~~--~LKpGG~ 311 (394)
.. .++.++.+|+.++.. ....++||+|++.. |....+++.+.++.+.+ +|||||+
T Consensus 91 --------------------~~-~~v~~~~~d~~~~~~-~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~ 148 (189)
T 3p9n_A 91 --------------------GL-SGATLRRGAVAAVVA-AGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV 148 (189)
T ss_dssp --------------------TC-SCEEEEESCHHHHHH-HCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred --------------------CC-CceEEEEccHHHHHh-hccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence 00 237889999987632 01257899999874 33334678899999999 9999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++-
T Consensus 149 l~~ 151 (189)
T 3p9n_A 149 AVV 151 (189)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=119.91 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
|+..+..+.+.+.. .++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+....
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~------------ 145 (258)
T 2pwy_A 81 YPKDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW------------ 145 (258)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC------------
T ss_pred cchHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc------------
Confidence 44445555555442 25679999999999999999998 6899999999999976663321100
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG 309 (394)
. ..++.+..+|+.+.. ...+.||+|+.. .++..++++.+.++||||
T Consensus 146 -------------g-------------~~~v~~~~~d~~~~~---~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g 191 (258)
T 2pwy_A 146 -------------Q-------------VENVRFHLGKLEEAE---LEEAAYDGVALD-----LMEPWKVLEKAALALKPD 191 (258)
T ss_dssp -------------C-------------CCCEEEEESCGGGCC---CCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred -------------C-------------CCCEEEEECchhhcC---CCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence 0 023778899988762 224789999873 234457899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|+++-+.|.. -..+++.+.+++.||+.++
T Consensus 192 G~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 192 RFLVAYLPNI----------------TQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEEESCH----------------HHHHHHHHHHTTTTEEEEE
T ss_pred CEEEEEeCCH----------------HHHHHHHHHHHHCCCceEE
Confidence 9999654421 1245777788889999876
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=127.82 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..++-.+.. +
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~----~----------------------------- 109 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRL----N----------------------------- 109 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHH----c-----------------------------
Confidence 567999999999999999999997 899999996 98766533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.+|+.++.. ..++||+|++.. ++....++..+++.+.++|||||++|
T Consensus 110 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 110 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEEeeHHHhcC---CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 011347889999988632 357899999764 67777778899999999999999998
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=116.21 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||+++. .|+|+|+|..|+..++..+.. +
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~----~----------------------------- 95 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY----N----------------------------- 95 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----C-----------------------------
Confidence 467999999999999999999987 899999999999776632211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC------------------ChhhHHHHHHHHHHhccCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------------TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD------------------ta~ni~~yl~~I~~~LKpG 309 (394)
...+++.++.+|+.++.. ....++||+|++. ||.. ...++.++++.+.++||||
T Consensus 96 -----~~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 96 -----QLEDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp -----TCTTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred -----CCcccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 012347889999988642 1235899999986 3322 0134668999999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
|+++-+-| .-..+++..++.+.||.......+
T Consensus 170 G~l~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 170 GKANFVHR-----------------PERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp EEEEEEEC-----------------TTTHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEc-----------------HHHHHHHHHHHHHCCCceEEEEEe
Confidence 99985311 125678999999999998876544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-12 Score=119.85 Aligned_cols=136 Identities=10% Similarity=0.010 Sum_probs=92.8
Q ss_pred CCeEEEecCCC---ChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 172 PPACLVPGAGL---GRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 172 ~~~VLvpGCGl---GRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
..+|||+|||+ |.++..+++. |..|+|+|+|..||..++-.+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------------------------------- 126 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------------------------------- 126 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------------------------------
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------------------------------
Confidence 46999999999 9987666654 78999999999999877633210
Q ss_pred CCCCCCCCCCCCceeEEecccccccC---C-----CCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYS---D-----PSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~---~-----~~~~~~fD~VvT~fF---lDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..++.++.+|+.+... . ....++||+|+..+. +... .+...|++++++|||||+++..
T Consensus 127 ----------~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 127 ----------DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp ----------CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred ----------CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 1237889999876310 0 001247999997753 4433 4889999999999999999852
Q ss_pred --cCc---ch----h-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 316 --GPL---LY----H-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 316 --GPL---ly----h-~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.+- .. . |.. .+ .+ ....+.+|+.+++ .||++++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~s~~ei~~~l--~G~~l~~~ 239 (274)
T 2qe6_A 196 SLVDTGLPAQQKLARITRE-NL-GE--GWARTPEEIERQF--GDFELVEP 239 (274)
T ss_dssp EEBCSSCHHHHHHHHHHHH-HH-SC--CCCBCHHHHHHTT--TTCEECTT
T ss_pred EecCcchHHHHHHHHHHHh-cC-CC--CccCCHHHHHHHh--CCCeEccC
Confidence 210 00 0 111 01 11 2347999999999 59998873
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=128.20 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..++......
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~--------------------------------- 111 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKAN--------------------------------- 111 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHc---------------------------------
Confidence 467999999999999999999998 89999999 5987666433210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.++.+|+.++. ...++||+|++.. ++.....+..+++.+.++|||||++|
T Consensus 112 -----~~~~~v~~~~~d~~~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 112 -----KLDHVVTIIKGKVEEVE---LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp -----TCTTTEEEEESCTTTCC---CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEECcHHHcc---CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 01124789999998873 2358999999853 46666778899999999999999997
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=113.00 Aligned_cols=135 Identities=10% Similarity=-0.016 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..+. +.+..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~---~~a~~----------------------------- 124 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI---NLAKK----------------------------- 124 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH---HHHHH-----------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH---HHhhc-----------------------------
Confidence 5679999999999999999987 378999999998864322 11110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhcc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLY 326 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~ 326 (394)
..++.++.+|+.+....+...++||+|++... .......+++.+.++|||||+++-. .+ -....
T Consensus 125 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~----~~~~~ 189 (233)
T 2ipx_A 125 ---------RTNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA----NCIDS 189 (233)
T ss_dssp ---------CTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH----HHHCS
T ss_pred ---------cCCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc----ccccc
Confidence 01367888998773211223578999997543 2233456788999999999999851 11 00010
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 327 GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 327 g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+ .+ ....++ ++ .+++++.||++++..
T Consensus 190 ~-~~-~~~~~~-~~-~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 190 T-AS-AEAVFA-SE-VKKMQQENMKPQEQL 215 (233)
T ss_dssp S-SC-HHHHHH-HH-HHTTGGGTEEEEEEE
T ss_pred C-CC-HHHHHH-HH-HHHHHHCCCceEEEE
Confidence 0 11 000122 33 478889999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-12 Score=109.60 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=85.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..+.|.+.++.. ++.+|||+|||+|.++..+++.|..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------------- 97 (194)
T 1dus_A 40 GTKILVENVVVD---KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN------------------- 97 (194)
T ss_dssp HHHHHHHHCCCC---TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHcccC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 444455555432 5679999999999999999999999999999999997666332110
Q ss_pred CcccCccccccCCCCCCCCCCCC-ceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITE-GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~-~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a~ni~~yl~~I~~~LKpGG~wI 313 (394)
. ..+ ++.+..+|+.+.. ..++||+|++..-+.. ..++..+++.+.++|||||+++
T Consensus 98 -------~------------~~~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 154 (194)
T 1dus_A 98 -------N------------LDNYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp -------T------------CTTSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -------C------------CCccceEEEECchhccc----ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEE
Confidence 0 001 2678889987743 2578999998754333 5667899999999999999998
Q ss_pred Ee
Q 016155 314 NL 315 (394)
Q Consensus 314 N~ 315 (394)
-.
T Consensus 155 ~~ 156 (194)
T 1dus_A 155 VV 156 (194)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=124.67 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=79.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..++-.+.. +
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~----~----------------------------- 83 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVEL----N----------------------------- 83 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHH----c-----------------------------
Confidence 456999999999999999999997 89999999 688766533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.++.+|+.++.. ..++||+|++. +++.....+..+++.+.++|||||++|
T Consensus 84 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 84 -----GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCCEEEEECchhhccC---CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 011347889999988632 24789999987 456666678899999999999999998
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=124.02 Aligned_cols=98 Identities=16% Similarity=0.068 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-.+.. .
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~----~------------------------------ 90 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD----R------------------------------ 90 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS----S------------------------------
T ss_pred CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh----c------------------------------
Confidence 577999999999999999999999999999999999766522110 0
Q ss_pred CCCCCCCCceeEEecccccccC--CCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~--~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+.+++.++.. .....++||+|++.+.+. ..+++..+++.+.++| |||+++-
T Consensus 91 -----------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~l 146 (261)
T 3iv6_A 91 -----------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRA 146 (261)
T ss_dssp -----------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred -----------cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEE
Confidence 01122222111 001247899999887654 3456888999999999 9999973
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-11 Score=119.21 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++..+...
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 228 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 228 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--------------------------------
Confidence 5679999999999999999998 578999999 99997665322100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecC--cch----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGP--LLY---- 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~wIN~GP--Lly---- 320 (394)
....++.+..+|+.+.. | ..||+|+....+.... ....+++.++++|||||++|-..+ ..-
T Consensus 229 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (374)
T 1qzz_A 229 ------GLADRVTVAEGDFFKPL--P---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 297 (374)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCCCceEEEeCCCCCcC--C---CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC
Confidence 01134889999997622 2 3499999887654333 345899999999999998875433 210
Q ss_pred -hhhhccCC---CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 321 -HFADLYGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 321 -h~~~~~g~---~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+....+. .......++.++++++++++||++++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 338 (374)
T 1qzz_A 298 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 338 (374)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred cchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 00000000 00002357999999999999999988653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=115.88 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=98.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
|+.-+..+...+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+...
T Consensus 97 ~~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------- 160 (277)
T 1o54_A 97 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW------------- 160 (277)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-------------
Confidence 34444455554432 25679999999999999999998 579999999999997666322110
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG 309 (394)
....++.+..+|+.+... .+.||+|+.. .++..++++.+.++||||
T Consensus 161 -------------------------~~~~~v~~~~~d~~~~~~----~~~~D~V~~~-----~~~~~~~l~~~~~~L~pg 206 (277)
T 1o54_A 161 -------------------------GLIERVTIKVRDISEGFD----EKDVDALFLD-----VPDPWNYIDKCWEALKGG 206 (277)
T ss_dssp -------------------------TCGGGEEEECCCGGGCCS----CCSEEEEEEC-----CSCGGGTHHHHHHHEEEE
T ss_pred -------------------------CCCCCEEEEECCHHHccc----CCccCEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence 001247788999887632 4689999873 234568899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+++...|.. -..+++.+.+++.||..++..
T Consensus 207 G~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 207 GRFATVCPTT----------------NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEEEEEESSH----------------HHHHHHHHHHHHSSEEEEEEE
T ss_pred CEEEEEeCCH----------------HHHHHHHHHHHHCCCceeEEE
Confidence 9999644321 124677788888999987743
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=121.07 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
...|.+.++.. +..+|||+|||+|.++..|+++ +..++++|+ ..|+..++-.+...
T Consensus 191 ~~~l~~~~~~~---~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 248 (369)
T 3gwz_A 191 AGQVAAAYDFS---GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR------------------ 248 (369)
T ss_dssp HHHHHHHSCCT---TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------------------
T ss_pred HHHHHHhCCCc---cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc------------------
Confidence 44455555422 5689999999999999999998 678999999 99987665322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~w 312 (394)
....++.+..+||.+-. | ..||+|+....|.... ...+.|+.++++|||||++
T Consensus 249 --------------------~l~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 303 (369)
T 3gwz_A 249 --------------------GLADRCEILPGDFFETI--P---DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRL 303 (369)
T ss_dssp --------------------TCTTTEEEEECCTTTCC--C---SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEE
T ss_pred --------------------CcCCceEEeccCCCCCC--C---CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 11235899999998422 2 3799999876554333 3458999999999999999
Q ss_pred EEecCcchh-------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INLGPLLYH-------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~GPLlyh-------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|-..++.-. +.+..-.......+.+.+|++++++++||++++..
T Consensus 304 ~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 354 (369)
T 3gwz_A 304 LVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL 354 (369)
T ss_dssp EEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred EEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence 854322100 00000000001246899999999999999999865
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-12 Score=112.97 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+... .
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~----- 89 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV--------------------------G----- 89 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------------------C-----
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc--------------------------C-----
Confidence 4678999999999999999998 579999999999997665322110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-h--------hHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-H--------NIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta-~--------ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
. .++.++.+|+.++.. ....++||+|++.|- +.. . ....+++.+.++|||||+++-..+.
T Consensus 90 -------~-~~v~~~~~d~~~~~~-~~~~~~~D~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 158 (214)
T 1yzh_A 90 -------V-PNIKLLWVDGSDLTD-YFEDGEIDRLYLNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN- 158 (214)
T ss_dssp -------C-SSEEEEECCSSCGGG-TSCTTCCSEEEEESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-
T ss_pred -------C-CCEEEEeCCHHHHHh-hcCCCCCCEEEEECC-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-
Confidence 0 247889999887531 123578999998753 211 0 1257899999999999998742110
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. . -.+++.+++.+.||+++...
T Consensus 159 ---~---------~---~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 159 ---R---------G---LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp ---H---------H---HHHHHHHHHHHHTCEEEEEE
T ss_pred ---H---------H---HHHHHHHHHHHCCCeeeecc
Confidence 0 0 23677888888999988754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-12 Score=113.87 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+... .
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~--------------------------~----- 86 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS--------------------------E----- 86 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS--------------------------C-----
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc--------------------------C-----
Confidence 4678999999999999999998 789999999999997665322100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hh------h--HHHHHHHHHHhccCCcEEEEecCcc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AH------N--IVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a~------n--i~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
-.++.++.+|+.++.. ....++||.|+.+| -+. .. . ...+++.++++|||||+++-..+.
T Consensus 87 --------~~nv~~~~~d~~~l~~-~~~~~~~d~v~~~~-~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~- 155 (213)
T 2fca_A 87 --------AQNVKLLNIDADTLTD-VFEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN- 155 (213)
T ss_dssp --------CSSEEEECCCGGGHHH-HCCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC-
T ss_pred --------CCCEEEEeCCHHHHHh-hcCcCCcCEEEEEC-CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC-
Confidence 0237889999887531 01257899987654 221 00 0 257899999999999999842110
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.--.+++.+++.+.||++...
T Consensus 156 ---------------~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 156 ---------------RGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp ---------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred ---------------HHHHHHHHHHHHHCCCccccc
Confidence 012356667777889988764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-12 Score=122.74 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=77.2
Q ss_pred CCCeEEEecCCCChhH-HHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLA-LEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa-~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++ ..+|+ .|..|+|+|+|..|+..|+..+...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------------------------------- 169 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------------------------------- 169 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc--------------------------------
Confidence 6889999999999875 55676 4999999999999998877433210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.. .+++++.||+.++. +++||+|+.... .++..++++.++++|||||+++.
T Consensus 170 ------gl-~~v~~v~gDa~~l~-----d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 170 ------GV-DGVNVITGDETVID-----GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp ------TC-CSEEEEESCGGGGG-----GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred ------CC-CCeEEEECchhhCC-----CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 11 24889999998852 478999987654 45677999999999999999995
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-13 Score=124.97 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=82.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..|+++|. .|+|+|+|..||..+.... .+ ... ..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~---~~---~~~-------------------~~---- 87 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD---ER---VVV-------------------ME---- 87 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC---TT---EEE-------------------EC----
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC---cc---ccc-------------------cc----
Confidence 467999999999999999999996 9999999999985433100 00 000 00
Q ss_pred CCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~-GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g 327 (394)
..++.+.. +|+... ......||+|+.. +..++++++++|||||+++- +.|..-......+
T Consensus 88 -------~~~~~~~~~~~~~~~---~~d~~~~D~v~~~--------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~ 149 (232)
T 3opn_A 88 -------QFNFRNAVLADFEQG---RPSFTSIDVSFIS--------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVG 149 (232)
T ss_dssp -------SCCGGGCCGGGCCSC---CCSEEEECCSSSC--------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC
T ss_pred -------cceEEEeCHhHcCcC---CCCEEEEEEEhhh--------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhC
Confidence 00111111 232210 0012344544322 25789999999999999985 3443110000011
Q ss_pred --CC--CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 --QE--DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 --~~--~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+. +......+.+++.++++++||+++...
T Consensus 150 ~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 150 KNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 00 001123488999999999999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=119.42 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|.. |+|+|+|..|+..++..+.. +
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~----n----------------------------- 171 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 171 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 4679999999999999999999985 99999999999766632110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
...+++.++.+|+.++.. .++||+|+.. ......++++.+.++|||||+++-..... ..
T Consensus 172 -----~~~~~v~~~~~D~~~~~~----~~~fD~Vi~~----~p~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~----- 230 (278)
T 2frn_A 172 -----KVEDRMSAYNMDNRDFPG----ENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHYHNTVP---EK----- 230 (278)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEEC----CCSSGGGGHHHHHHHEEEEEEEEEEEEEE---GG-----
T ss_pred -----CCCceEEEEECCHHHhcc----cCCccEEEEC----CchhHHHHHHHHHHHCCCCeEEEEEEeec---cc-----
Confidence 011237889999988642 5789999774 33344678999999999999998421110 00
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
....-..+++.+++++.||++..
T Consensus 231 --~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 231 --LMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --GTTTTTHHHHHHHHHHTTCEEEE
T ss_pred --cccccHHHHHHHHHHHcCCeeEE
Confidence 01134678999999999999876
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=110.40 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..+... .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------- 87 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT--------------------------G------- 87 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 3568999999999999999999999999999999997766322110 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe--cccCChhhHHHHHHHHH--HhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTAHNIVEYIEIIS--RILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~--~~LKpGG~wIN 314 (394)
. ++.++.+|+.+... .+...++||+|++. |. ...+ +.++.+. ++|||||+++-
T Consensus 88 -----~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 88 -----L--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLA---ALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp -----C--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTT---HHHHHHHHHTCEEEEEEEEE
T ss_pred -----C--ceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHH---HHHHHHHhhcccCCCcEEEE
Confidence 0 26778889877421 11112479999987 44 3333 4455555 99999999984
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=110.43 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=78.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|+++ | -.|+|+|+|..|+..++..+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 70 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------------------------------- 70 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 5679999999999999999997 2 48999999999997766332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c--------cCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F--------IDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F--------lDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|+.++.. ...++||+|++.. | +....+..++++.+.++|||||+++-
T Consensus 71 -------~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 71 -------NLIDRVTLIKDGHQNMDK--YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp -------TCGGGEEEECSCGGGGGG--TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCCeEEEECCHHHHhh--hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 011247889999888642 1247899999775 2 23344667899999999999999985
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=114.20 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+ .+..|+|+|+|..|+..++..+...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 118 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY-------------------------------- 118 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 456999999999999999999 5789999999999997776433210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
...+++.++.+|+.+.... ...++||+|+.... ..+..++++.+.++|||||++|--.
T Consensus 119 ------~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 119 ------HFENQVRIIEGNALEQFEN-VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ------TCTTTEEEEESCGGGCHHH-HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ------CCCCcEEEEECCHHHHHHh-hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 0113488999999875320 12478999985432 4457789999999999999998533
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-11 Score=114.11 Aligned_cols=135 Identities=20% Similarity=0.211 Sum_probs=98.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++.+.+.++ .++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++......
T Consensus 98 l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~----------------- 156 (276)
T 2b3t_A 98 LVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL----------------- 156 (276)
T ss_dssp HHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 5566666554 14679999999999999999976 789999999999997766322110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC---------------------
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT--------------------- 291 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt--------------------- 291 (394)
. . .++.++.+|+.+... .++||+|++.. |+..
T Consensus 157 ---------~------------~-~~v~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~ 210 (276)
T 2b3t_A 157 ---------A------------I-KNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA 210 (276)
T ss_dssp ---------T------------C-CSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH
T ss_pred ---------C------------C-CceEEEEcchhhhcc----cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCC
Confidence 0 0 137889999887432 46899999873 3322
Q ss_pred ---hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 292 ---AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 292 ---a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
......+++.+.++|||||+++-.-+ ..+.+++.+++++.||+.++
T Consensus 211 ~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------~~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 211 DSGMADIVHIIEQSRNALVSGGFLLLEHG-----------------WQQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp HHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------SSCHHHHHHHHHHTTCTTCC
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------chHHHHHHHHHHHCCCcEEE
Confidence 13457789999999999999984210 12578999999999998654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=112.17 Aligned_cols=141 Identities=20% Similarity=0.236 Sum_probs=94.2
Q ss_pred cchHHHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEE
Q 016155 125 ADVDKVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGN 199 (394)
Q Consensus 125 ~d~~kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~ 199 (394)
.|-+.+...+.++.+ +|...-..+.. .++..+.... ++.+|||+|||+|.++..||+. |..|+|+
T Consensus 20 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~v 89 (221)
T 3u81_A 20 GDPQSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLTM 89 (221)
T ss_dssp TCHHHHHHHHHHHHHHHTCGGGCCHHHH----HHHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhhhcCcCcccCHHHH----HHHHHHHHhc------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEE
Confidence 455677778888876 45332222222 2444444432 4569999999999999999984 7899999
Q ss_pred eCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CC--CC
Q 016155 200 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DP--SQ 276 (394)
Q Consensus 200 D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~--~~ 276 (394)
|+|..|+..++-.+... ...+++.++.||+.++.. .+ ..
T Consensus 90 D~~~~~~~~a~~~~~~~--------------------------------------~~~~~v~~~~~d~~~~l~~~~~~~~ 131 (221)
T 3u81_A 90 EINPDCAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKYD 131 (221)
T ss_dssp ESCHHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGTTTTSC
T ss_pred eCChHHHHHHHHHHHHc--------------------------------------CCCCceEEEECCHHHHHHHHHHhcC
Confidence 99999997766332211 011247889999876432 10 11
Q ss_pred CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 277 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 277 ~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.++||+|+.........+..++++.+ ++|||||++|-
T Consensus 132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~ 168 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA 168 (221)
T ss_dssp CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence 26899997654444444455677777 99999999984
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=113.69 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=79.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+..
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------- 76 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER--------------------------------- 76 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------------------------------
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 5679999999999999999999 56999999999998654411100
Q ss_pred CCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEI 301 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~f-FlDt-------------------------a~ni~~yl~~ 301 (394)
.+.++.++.+|+.+.... ....++||+|++.. |... ......+++.
T Consensus 77 -------~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (215)
T 4dzr_A 77 -------FGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL 149 (215)
T ss_dssp -------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred -------hCCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence 000366788888773210 00127899999852 1110 1112678899
Q ss_pred HHHhccCCcE-EEEecCcchhhhhccCCCCCccccCCHHHHHHHHH--hCCCEEEEEe
Q 016155 302 ISRILKDGGV-WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVAL--HYGFEFEKEK 356 (394)
Q Consensus 302 I~~~LKpGG~-wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~--~~GF~ii~e~ 356 (394)
++++|||||+ ++-.-+ .-..+++.+++. +.||..++..
T Consensus 150 ~~~~LkpgG~l~~~~~~-----------------~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 150 PPYVLARGRAGVFLEVG-----------------HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp CGGGBCSSSEEEEEECT-----------------TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred HHHHhcCCCeEEEEEEC-----------------CccHHHHHHHHHHhhcCCceEEEE
Confidence 9999999999 442111 125678899999 9999776543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-12 Score=114.26 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=75.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
+.+|||+|||+|.++.+++.+|. .|+|+|+|..|+..++..+... .+ .
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~~-----~ 102 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL--------------------------KC-----S 102 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------TC-----C
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh--------------------------CC-----C
Confidence 46899999999999999988886 8999999999998776332110 00 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHH--HHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEII--SRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~-fD~VvT~fFlDta~ni~~yl~~I--~~~LKpGG~wIN 314 (394)
..++.++.+|+.++... ...++ ||+|++..-+. ..+..+.++.+ .++|||||+++-
T Consensus 103 ------~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 103 ------SEQAEVINQSSLDFLKQ-PQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp ------TTTEEEECSCHHHHTTS-CCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ------ccceEEEECCHHHHHHh-hccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEE
Confidence 02478899998875321 12468 99999764222 34566788888 678999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=116.77 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|++++ ..++++|+ ..|+..++..+...
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 229 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-------------------------------- 229 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--------------------------------
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--------------------------------
Confidence 56799999999999999999985 57889999 88987665222100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCc-ch-----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPL-LY----- 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPL-ly----- 320 (394)
....++.++.+|+.+.. | ..||+|+....+... ++..++++.++++|||||++|-..+. +-
T Consensus 230 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 298 (360)
T 1tw3_A 230 ------GLSDRVDVVEGDFFEPL--P---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 298 (360)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS
T ss_pred ------CCCCceEEEeCCCCCCC--C---CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc
Confidence 01124889999987632 2 349999987655433 33468999999999999999864433 11
Q ss_pred hhh---hccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 321 HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 321 h~~---~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+. +..-.......+++.+|++++++++||++++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 299 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred chhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 000 0000000012357999999999999999988653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=116.60 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=98.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|+++ +..++++|+ ..|+..++-.+...
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 215 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT-------------------------------- 215 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--------------------------------
Confidence 4579999999999999999986 568999999 99987665322100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYH----- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--ni~~yl~~I~~~LKpGG~wIN~GPLlyh----- 321 (394)
....++++..+||.+-. | ..||+|+....+..-+ ...+.+++++++|||||+++-..+..-.
T Consensus 216 ------~~~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 284 (332)
T 3i53_A 216 ------GLSGRAQVVVGSFFDPL--P---AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGT 284 (332)
T ss_dssp ------TCTTTEEEEECCTTSCC--C---CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCH
T ss_pred ------CcCcCeEEecCCCCCCC--C---CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccH
Confidence 11235899999997422 2 2799999887654333 3679999999999999999854332110
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+..-.......+.+.+|++++++++||++++..
T Consensus 285 ~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 285 GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 00000000001246799999999999999999865
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-13 Score=121.17 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..++..+...
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 123 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY---------------------------------- 123 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 4569999999999999999999999999999999997766332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
....++.++.+|+.++.. .++||+|++..-+....+....+..++++|||||++|-- ++... ....
T Consensus 124 ----~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~-----~~~~~-~~~~ 189 (241)
T 3gdh_A 124 ----GIADKIEFICGDFLLLAS----FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR-----LSKKI-TNNI 189 (241)
T ss_dssp ----TCGGGEEEEESCHHHHGG----GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH-----HHHHH-CSCE
T ss_pred ----CCCcCeEEEECChHHhcc----cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH-----HHHhh-CCce
Confidence 011247899999988642 478999998754433444444677899999999997621 11100 0000
Q ss_pred --CccccCCHHHHHHHHHhCCCEEEE
Q 016155 331 --EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 331 --~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.....++.+++.+++..-|.-.+.
T Consensus 190 ~~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 190 VYFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp EEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHhccCCCEEEE
Confidence 012356889999998877755443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-11 Score=116.05 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=103.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
...+.+.++-. + .+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 157 ~~~~~~~~~~~---~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 213 (334)
T 2ip2_A 157 FHEIPRLLDFR---G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL------------------ 213 (334)
T ss_dssp HHHHHHHSCCT---T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH------------------
T ss_pred HHHHHHhCCCC---C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc------------------
Confidence 34444445422 3 79999999999999999988 678999999 99987655221100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~w 312 (394)
....++.+..+||.+- . .+.||+|+....+. ..+.....++.++++|||||++
T Consensus 214 --------------------~~~~~v~~~~~d~~~~--~---~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l 268 (334)
T 2ip2_A 214 --------------------LAGERVSLVGGDMLQE--V---PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRV 268 (334)
T ss_dssp --------------------HHTTSEEEEESCTTTC--C---CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCcEEEecCCCCCC--C---CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 0012478999999872 2 25799999887664 3445669999999999999999
Q ss_pred EEecCcch-------h-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INLGPLLY-------H-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~GPLly-------h-~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|-..+..- . +.+..-.......+.+.+|++++++++||++++..
T Consensus 269 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 269 VVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp EEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 85432210 0 00000000001245799999999999999998865
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-11 Score=108.50 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=94.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
|+..+..+...+.. .++.+|||+|||+|.++..+++++..|+|+|+|..|+..++..+...
T Consensus 76 ~~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 136 (248)
T 2yvl_A 76 YPKDSFYIALKLNL---NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF---------------- 136 (248)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHT----------------
T ss_pred cchhHHHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc----------------
Confidence 34444555555542 25679999999999999999999999999999999997666332110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
....++.+..+|+.+... ..+.||+|+.. .++...+++.+.++|||||++
T Consensus 137 ----------------------~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l 186 (248)
T 2yvl_A 137 ----------------------NLGKNVKFFNVDFKDAEV---PEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPV 186 (248)
T ss_dssp ----------------------TCCTTEEEECSCTTTSCC---CTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEE
T ss_pred ----------------------CCCCcEEEEEcChhhccc---CCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEE
Confidence 001236778889877531 24689999863 234567899999999999999
Q ss_pred EEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 313 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 313 IN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
+-..|.. -...++.+++.+. |..++
T Consensus 187 ~~~~~~~----------------~~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 187 GFLLPTA----------------NQVIKLLESIENY-FGNLE 211 (248)
T ss_dssp EEEESSH----------------HHHHHHHHHSTTT-EEEEE
T ss_pred EEEeCCH----------------HHHHHHHHHHHhh-CCcce
Confidence 9644321 0234666667666 87665
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=118.23 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=93.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+|++. +..|+|+|+|..|+..++-.+..... ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------------------------~~---- 146 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR------------------------SL---- 146 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------------------GG----
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc------------------------cc----
Confidence 4579999999999999999988 46899999999999776632210000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhH--HHHHHHHHHhccCCcEEEEecCcchhhhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNI--VEYIEIISRILKDGGVWINLGPLLYHFAD 324 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni--~~yl~~I~~~LKpGG~wIN~GPLlyh~~~ 324 (394)
...++.++.+|+.++... ...++||+|++..+.... ..+ .++++.++++|||||+++...+-.|.
T Consensus 147 -------~~~~v~~~~~D~~~~~~~-~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--- 215 (304)
T 3bwc_A 147 -------ADPRATVRVGDGLAFVRQ-TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--- 215 (304)
T ss_dssp -------GCTTEEEEESCHHHHHHS-SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT---
T ss_pred -------CCCcEEEEECcHHHHHHh-ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc---
Confidence 012478899998875321 025789999986543222 222 58999999999999999863221110
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-....+++.+.++++||..++..
T Consensus 216 ---------~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 216 ---------DLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ---------chHHHHHHHHHHHhCCCCcEEEE
Confidence 01246788899999999887644
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=125.89 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=102.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..||++| ..|+|+|+|..|+..|+..++....+ . .
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA---------------k--r--------- 774 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK---------------E--A--------- 774 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT---------------T--C---------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch---------------h--h---------
Confidence 56799999999999999999998 89999999999998776433211000 0 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcc-hh--h
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLL-YH--F 322 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLl-yh--~ 322 (394)
....++.+..||+.++. ...+.||+|++...|...++ ...+++.++++|||| ++|-..|.. |. |
T Consensus 775 -------~gl~nVefiqGDa~dLp---~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF 843 (950)
T 3htx_A 775 -------CNVKSATLYDGSILEFD---SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTIL 843 (950)
T ss_dssp -------SSCSEEEEEESCTTSCC---TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHH
T ss_pred -------cCCCceEEEECchHhCC---cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhh
Confidence 00124889999998864 34689999998876665444 446999999999999 444322221 10 1
Q ss_pred hh-----------c--cC--CCCCccccCCHHHHHH----HHHhCCCEEEEEe
Q 016155 323 AD-----------L--YG--QEDEMSIELSLEDVKR----VALHYGFEFEKEK 356 (394)
Q Consensus 323 ~~-----------~--~g--~~~~~~ieLS~eEl~~----ll~~~GF~ii~e~ 356 (394)
.. . .+ ..+...++++.+|++. ++.+.||++....
T Consensus 844 ~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvG 896 (950)
T 3htx_A 844 QRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSG 896 (950)
T ss_dssp TCC------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhcccccccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEc
Confidence 10 0 00 0112356789999988 7888999886654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-12 Score=127.90 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.|.+..... ..++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.. +
T Consensus 219 ll~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~----~--------------- 278 (381)
T 3dmg_A 219 LLEALQERLGPE-GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA----N--------------- 278 (381)
T ss_dssp HHHHHHHHHCTT-TTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHH----T---------------
T ss_pred HHHHHHHhhccc-CCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c---------------
Confidence 555555543200 12567999999999999999999999999999999999776632211 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--cc---CChhhHHHHHHHHHHhccCCc
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FI---DTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--Fl---Dta~ni~~yl~~I~~~LKpGG 310 (394)
+.++.++.+|+.+... ..++||+|++.. +. .+..+...+++.+.++|||||
T Consensus 279 ---------------------~~~v~~~~~D~~~~~~---~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG 334 (381)
T 3dmg_A 279 ---------------------ALKAQALHSDVDEALT---EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGG 334 (381)
T ss_dssp ---------------------TCCCEEEECSTTTTSC---TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEE
T ss_pred ---------------------CCCeEEEEcchhhccc---cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCc
Confidence 0015778899887532 247999999873 22 234667899999999999999
Q ss_pred EEEEe
Q 016155 311 VWINL 315 (394)
Q Consensus 311 ~wIN~ 315 (394)
+++-.
T Consensus 335 ~l~iv 339 (381)
T 3dmg_A 335 VFFLV 339 (381)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=114.35 Aligned_cols=162 Identities=17% Similarity=0.084 Sum_probs=101.5
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~fil 213 (394)
-+|.|... |. .+-+.|..-+....-+++.+|||+|||+|.++..||+. | =.|+|+|+|..|+..++.
T Consensus 51 e~r~w~p~----rs----klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~-- 120 (233)
T 4df3_A 51 EYREWNAY----RS----KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-- 120 (233)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH--
T ss_pred eeeeECCC----ch----HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH--
Confidence 47888853 32 24445544343333447899999999999999999987 4 479999999999954431
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ 293 (394)
.+.+ ..|+..+.+|..+....+...+.+|+|+..+.. ..
T Consensus 121 -~a~~--------------------------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~--~~ 159 (233)
T 4df3_A 121 -VVRD--------------------------------------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQ--PE 159 (233)
T ss_dssp -HSTT--------------------------------------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCC--TT
T ss_pred -hhHh--------------------------------------hcCeeEEEEeccCccccccccceEEEEEEeccC--Ch
Confidence 1110 113556667765533223446789988754432 24
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 294 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+...++.++++.|||||+++-. +.+.-.+.. .++.. ...+..+.|++.||++++..
T Consensus 160 ~~~~~l~~~~r~LKpGG~lvI~--ik~r~~d~~-~p~~~----~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 160 QAAIVVRNARFFLRDGGYMLMA--IKARSIDVT-TEPSE----VYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE--EECCHHHHH-TCCCH----HHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHHHHhccCCCEEEEE--EecccCCCC-CChHH----HHHHHHHHHHHCCCEEEEEE
Confidence 5668899999999999999842 111111111 11111 12334456778999998754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-11 Score=102.79 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=82.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++++ +..++|+|+|. |+..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------------------------------- 61 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------------------------------- 61 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------------------------------
Confidence 5679999999999999999988 47999999999 7410
Q ss_pred CCCCCCCCCCCceeEEecccccccC---CC--CCCCCccEEEEecccCChhhH-----------HHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS---DP--SQVGAWDAVVTCFFIDTAHNI-----------VEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~---~~--~~~~~fD~VvT~fFlDta~ni-----------~~yl~~I~~~LKpGG~ 311 (394)
.++.+..+|+.+... .+ ...++||+|++...+....+. ..+++.+.++|||||+
T Consensus 62 ----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 62 ----------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp ----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 125677888876420 00 124789999986443322221 6889999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++-..+. .-..+++...+.+. |+.+...
T Consensus 132 l~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 132 FVVKVFQ----------------GEGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp EEEEEES----------------STTHHHHHHHHHHH-EEEEEEE
T ss_pred EEEEEec----------------CCcHHHHHHHHHHh-hhhEEee
Confidence 9853221 12456777777774 7766543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-11 Score=116.33 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||||||+|.++.++|..+ ..++|+|+|..|+..|+..+..+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------------------------------- 251 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS------------------------------- 251 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 56799999999999999999986 89999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhh----HHHHHHHHHHhccCCcEEEEecCcc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHN----IVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF--lDta~n----i~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
... ++.+..+|+.++.. ..+.||+|++. |. +....+ ..++++.+.++|||||.++-+.|
T Consensus 252 -------g~~-~i~~~~~D~~~~~~---~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-- 318 (354)
T 3tma_A 252 -------GLS-WIRFLRADARHLPR---FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-- 318 (354)
T ss_dssp -------TCT-TCEEEECCGGGGGG---TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES--
T ss_pred -------CCC-ceEEEeCChhhCcc---ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC--
Confidence 011 37889999998743 24569999985 32 222222 25789999999999999985321
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRK 383 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K 383 (394)
+.+-++.+++ .||+..+...+ ..+...+.+||++|
T Consensus 319 -----------------~~~~~~~~~~-~g~~~~~~~~l-----------~~g~l~~~i~vl~r 353 (354)
T 3tma_A 319 -----------------RPALLKRALP-PGFALRHARVV-----------EQGGVYPRVFVLEK 353 (354)
T ss_dssp -----------------CHHHHHHHCC-TTEEEEEEEEC-----------CBTTBCCEEEEEEE
T ss_pred -----------------CHHHHHHHhh-cCcEEEEEEEE-----------EeCCEEEEEEEEEc
Confidence 3344555666 99999876642 22334567888876
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=120.44 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=90.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+...|+.+-.. .++.+|||+|||||.++..|+++|. .|+|+|+|+.||..+.. +. +
T Consensus 73 l~~~l~~~~~~---~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r--~~---~--------------- 129 (291)
T 3hp7_A 73 LEKALAVFNLS---VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR--QD---D--------------- 129 (291)
T ss_dssp HHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH--TC---T---------------
T ss_pred HHHHHHhcCCC---ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH--hC---c---------------
Confidence 44555543222 1567999999999999999999997 89999999999843210 00 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
| + ..+-..++..+........+||+|++.. |++ +...|.+++++|||||.+|
T Consensus 130 -------r-v---------------~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv 182 (291)
T 3hp7_A 130 -------R-V---------------RSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVV 182 (291)
T ss_dssp -------T-E---------------EEECSCCGGGCCGGGCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEE
T ss_pred -------c-c---------------ceecccCceecchhhCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEE
Confidence 0 0 0000111111110000124599887643 443 3578999999999999998
Q ss_pred E-ecCcchhhhhc-cC--CC--CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 314 N-LGPLLYHFADL-YG--QE--DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 314 N-~GPLlyh~~~~-~g--~~--~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
- +.|-+ .-... .+ +. +......+.+++.+++..+||++...
T Consensus 183 ~lvkPqf-e~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 183 ALVKPQF-EAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp EEECGGG-TSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEECccc-ccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6 45532 11111 11 10 00112458899999999999998874
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=113.59 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=79.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++..+...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 111 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA------------------------------- 111 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 789999999999997766332210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
....++.+..||+.+........++||+|+... ...+...|++.+.++|||||++|-...
T Consensus 112 -------g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 112 -------GVDQRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp -------TCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred -------CCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 112348899999877432111235899997633 345677899999999999999985433
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=109.56 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+||++|||. | ++|+|..|+..++-..
T Consensus 12 ~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~------------------------------------- 40 (176)
T 2ld4_A 12 AGQFVAVVWDKS-------------S-PVEALKGLVDKLQALT------------------------------------- 40 (176)
T ss_dssp TTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHT-------------------------------------
T ss_pred CCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhc-------------------------------------
Confidence 678999999996 2 3899999997554110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
..++.+..+|+.++...+..+++||+|++.+.+... ++..+.+++++++|||||+++-..|..- . .+ .
T Consensus 41 ------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~---~-~~-~ 109 (176)
T 2ld4_A 41 ------GNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVET---A-VD-N 109 (176)
T ss_dssp ------TTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEES---S-SC-S
T ss_pred ------ccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccc---c-cc-c
Confidence 001567888988763211136899999998777766 6778999999999999999997544311 0 00 0
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.....+.+++.++++++|| +..
T Consensus 110 --~~~~~~~~~~~~~l~~aGf-i~~ 131 (176)
T 2ld4_A 110 --NSKVKTASKLCSALTLSGL-VEV 131 (176)
T ss_dssp --SSSSCCHHHHHHHHHHTTC-EEE
T ss_pred --ccccCCHHHHHHHHHHCCC-cEe
Confidence 2345689999999999999 553
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=109.20 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=80.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+...+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 64 ~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 122 (210)
T 3lbf_A 64 YMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL------------------ 122 (210)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc------------------
Confidence 355555555543 26789999999999999999999999999999999997766332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. ..++.+..+|+.+... ..++||+|+....+.... +.+.++|||||++|-
T Consensus 123 --------------------~-~~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~------~~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 123 --------------------D-LHNVSTRHGDGWQGWQ---ARAPFDAIIVTAAPPEIP------TALMTQLDEGGILVL 172 (210)
T ss_dssp --------------------T-CCSEEEEESCGGGCCG---GGCCEEEEEESSBCSSCC------THHHHTEEEEEEEEE
T ss_pred --------------------C-CCceEEEECCcccCCc---cCCCccEEEEccchhhhh------HHHHHhcccCcEEEE
Confidence 0 0137889999887542 257899999876554433 268899999999985
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-12 Score=109.06 Aligned_cols=103 Identities=18% Similarity=0.082 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 77 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 77 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999975 8999999999997766322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH--HhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS--RILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~--~~LKpGG~wIN 314 (394)
....++.++.+|+.+... ...+.||+|++..-.. .....+.++.+. ++|||||+++-
T Consensus 78 -----~~~~~~~~~~~d~~~~~~--~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 78 -----KAENRFTLLKMEAERAID--CLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp -----TCGGGEEEECSCHHHHHH--HBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CCCCceEEEECcHHHhHH--hhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEE
Confidence 011247889999887421 1236799998763111 134556677776 99999999984
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-12 Score=121.35 Aligned_cols=174 Identities=9% Similarity=-0.086 Sum_probs=85.1
Q ss_pred cCCcccCCCCCCCccccchHHHhhhhccccccc------CCCCCCCCCCCCCCcCCCCCCcchHHHHHHHHH-HhhcCcc
Q 016155 71 EGPIEYKTASCPGKLENREETNQSCSNDFTDSN------GNASSPACDWLDPSIQLNVPLADVDKVRCIIRN-IVRDWAA 143 (394)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~kv~~~L~q-~~RDWS~ 143 (394)
+.+|||.||+|+.-.......-+.+..+-..+| |+. ..|..+++..|+. .++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~f~~y~~~~i~-----------------~~dr~~a~~~i~~~~~~~~~- 62 (276)
T 2wa2_A 1 MAHHHHHHGICSSAPTLGEIWKRKLNQLDAKEFMAYRRRFVV-----------------EVDRNEAREALAKGKTNTGH- 62 (276)
T ss_dssp ------------CHHHHHHHHHHHHHHCCHHHHHHHHHTTCC-----------------CC-------------------
T ss_pred CCccccccccccccchHHHHHHHHHHHhhHHHHHHhhhcCCC-----------------ccCHHHHHHHHHcCCCCCCC-
Confidence 357889999999988877644333322222222 322 1233444444432 111111
Q ss_pred cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccc
Q 016155 144 EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWN 223 (394)
Q Consensus 144 eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~ 223 (394)
-+......+.+.++..+. +++.+|||+|||+|.++..+|++ ..|+|+|+|. |+.. +.+.
T Consensus 63 ----~~sR~a~KL~~i~~~~~~----~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~-------a~~~---- 121 (276)
T 2wa2_A 63 ----AVSRGTAKLAWIDERGGV----ELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTS-------GHEK---- 121 (276)
T ss_dssp ------CHHHHHHHHHHHTTSC----CCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCT-------TSCC----
T ss_pred ----cCchHHHHHHHHHHcCCC----CCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhh-------hhhc----
Confidence 111111224444443221 25679999999999999999999 6899999998 7421 1000
Q ss_pred cccccccccCCCCcccCccccccCCCCCCCCCCCCceeEE--ecccccccCCCCCCCCccEEEEecc-cCChh--h---H
Q 016155 224 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFF-IDTAH--N---I 295 (394)
Q Consensus 224 i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~--~GDf~ely~~~~~~~~fD~VvT~fF-lDta~--n---i 295 (394)
+ ++. ...+.++.++ .+|+.++. .++||+|++.+- +...+ + .
T Consensus 122 -------------------~--~~~-----~~~~~~v~~~~~~~D~~~l~-----~~~fD~Vvsd~~~~~~~~~~d~~~~ 170 (276)
T 2wa2_A 122 -------------------P--RLV-----ETFGWNLITFKSKVDVTKME-----PFQADTVLCDIGESNPTAAVEASRT 170 (276)
T ss_dssp -------------------C--CCC-----CCTTGGGEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHHH
T ss_pred -------------------h--hhh-----hhcCCCeEEEeccCcHhhCC-----CCCcCEEEECCCcCCCchhhhHHHH
Confidence 0 000 0011247888 99998753 478999998643 21111 1 1
Q ss_pred HHHHHHHHHhccCCc--EEEE
Q 016155 296 VEYIEIISRILKDGG--VWIN 314 (394)
Q Consensus 296 ~~yl~~I~~~LKpGG--~wIN 314 (394)
...|+.+.++||||| .||-
T Consensus 171 l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 171 LTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp HHHHHHHHHHHHHSTTCEEEE
T ss_pred HHHHHHHHHHhccCCCcEEEE
Confidence 237899999999999 8884
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=115.01 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=78.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+...++. ++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++...
T Consensus 74 ~~~~~~~~~~~----~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 129 (269)
T 1p91_A 74 IVAQLRERLDD----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------------------- 129 (269)
T ss_dssp HHHHHHHHSCT----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcCC----CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------------------
Confidence 55555555532 5679999999999999999998 889999999999996554110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.++.+..+|+.++. ...++||+|++.+.. ..++++.++|||||+++
T Consensus 130 ------------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~ 175 (269)
T 1p91_A 130 ------------------------PQVTFCVASSHRLP---FSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVI 175 (269)
T ss_dssp ------------------------TTSEEEECCTTSCS---BCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEE
T ss_pred ------------------------CCcEEEEcchhhCC---CCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEE
Confidence 12467788877653 345789999975432 34899999999999999
Q ss_pred EecC
Q 016155 314 NLGP 317 (394)
Q Consensus 314 N~GP 317 (394)
-..|
T Consensus 176 ~~~~ 179 (269)
T 1p91_A 176 TATP 179 (269)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7544
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=123.50 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=88.4
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccc
Q 016155 147 TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIY 225 (394)
Q Consensus 147 ~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~ 225 (394)
..|..+|...|..-...+ ++..|||+|||+|-|+...|+.|. .|+|+|.|. |+..|+.+... +
T Consensus 65 ~~Rt~aY~~Ai~~~~~~~------~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~----n----- 128 (376)
T 4hc4_A 65 RVRTDAYRLGILRNWAAL------RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF----N----- 128 (376)
T ss_dssp HHHHHHHHHHHHTTHHHH------TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH----T-----
T ss_pred HHHHHHHHHHHHhCHHhc------CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH----c-----
Confidence 456667766553322333 456899999999999999999996 699999995 87766654321 1
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHH
Q 016155 226 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEII 302 (394)
Q Consensus 226 Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I 302 (394)
...+.+.++.||+.++-. .++||+||+- +++.....+..++...
T Consensus 129 -----------------------------~~~~~i~~i~~~~~~~~l----pe~~DvivsE~~~~~l~~e~~l~~~l~a~ 175 (376)
T 4hc4_A 129 -----------------------------GLEDRVHVLPGPVETVEL----PEQVDAIVSEWMGYGLLHESMLSSVLHAR 175 (376)
T ss_dssp -----------------------------TCTTTEEEEESCTTTCCC----SSCEEEEECCCCBTTBTTTCSHHHHHHHH
T ss_pred -----------------------------CCCceEEEEeeeeeeecC----CccccEEEeecccccccccchhhhHHHHH
Confidence 112348899999988743 3789999984 4566666688899999
Q ss_pred HHhccCCcEEE
Q 016155 303 SRILKDGGVWI 313 (394)
Q Consensus 303 ~~~LKpGG~wI 313 (394)
.++|||||++|
T Consensus 176 ~r~Lkp~G~~i 186 (376)
T 4hc4_A 176 TKWLKEGGLLL 186 (376)
T ss_dssp HHHEEEEEEEE
T ss_pred HhhCCCCceEC
Confidence 99999999998
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-11 Score=114.68 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=94.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeC-CHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEF-SYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~-S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
++++|.+.... .++.+|||+|||+|.++..+++.|. .|+|+|+ |..|+..++..... +
T Consensus 67 l~~~l~~~~~~---~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~----N------------- 126 (281)
T 3bzb_A 67 LADTLCWQPEL---IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE----H------------- 126 (281)
T ss_dssp HHHHHHHCGGG---TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT----T-------------
T ss_pred HHHHHHhcchh---cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH----h-------------
Confidence 45555554321 1456999999999999999999998 8999999 89999776633210 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEeccccc----ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc--
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE----VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK-- 307 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e----ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK-- 307 (394)
.. ... .+..+ ...++.+...|..+ +... ...++||+|+....+-..+++..+++++.++||
T Consensus 127 ~~-~~~---~~~~~--------~~~~v~~~~~~~~~~~~~~~~~-~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~ 193 (281)
T 3bzb_A 127 TA-NSC---SSETV--------KRASPKVVPYRWGDSPDSLQRC-TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALP 193 (281)
T ss_dssp CC----------------------CCCEEEECCTTSCTHHHHHH-HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCT
T ss_pred hh-hhc---ccccC--------CCCCeEEEEecCCCccHHHHhh-ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhccc
Confidence 00 000 00000 00134555333222 2100 014789999987655556778899999999999
Q ss_pred -C--CcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEEE
Q 016155 308 -D--GGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKE 355 (394)
Q Consensus 308 -p--GG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~e 355 (394)
| ||+++- +.|.. + .+.-..+++.+++++.| |++++.
T Consensus 194 ~p~~gG~l~v~~~~~~----------~--~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 194 ANDPTAVALVTFTHHR----------P--HLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp TTCTTCEEEEEECC--------------------CTHHHHHHHHSTTEEEEEE
T ss_pred CCCCCCEEEEEEEeee----------c--ccchhHHHHHHHHHhcCCEEEEEe
Confidence 9 998653 22210 0 11123467778889999 999875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-10 Score=108.23 Aligned_cols=177 Identities=16% Similarity=0.045 Sum_probs=101.7
Q ss_pred hhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhh
Q 016155 138 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 138 ~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn 214 (394)
+|.|... |. .+-..|.+.+.....+++.+|||+|||+|.++..||++ .-.|+|+|+|..|+.. +++
T Consensus 51 yr~w~~~----~s----kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~---l~~ 119 (232)
T 3id6_C 51 YREWNAF----RS----KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE---LLL 119 (232)
T ss_dssp EEECCTT----TC----HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH---HHH
T ss_pred hhhhchH----HH----HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH---HHH
Confidence 7788643 22 13344444443222347889999999999999999986 2489999999999631 111
Q ss_pred ccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh
Q 016155 215 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 294 (394)
Q Consensus 215 ~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n 294 (394)
.+.+. .|+.++.+|+..........+.||+|++..-. ++
T Consensus 120 ~a~~r--------------------------------------~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~ 158 (232)
T 3id6_C 120 VAQRR--------------------------------------PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PD 158 (232)
T ss_dssp HHHHC--------------------------------------TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TT
T ss_pred Hhhhc--------------------------------------CCeEEEEcccccchhhhccccceEEEEecCCC---hh
Confidence 11110 13677888887532111124689999876433 33
Q ss_pred HHHH-HHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccc
Q 016155 295 IVEY-IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNR 373 (394)
Q Consensus 295 i~~y-l~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~ 373 (394)
..+. ++.+.++|||||+++-. .++-.-+....+ -+...+ ....|++.||++++.... -+|..
T Consensus 159 ~~~il~~~~~~~LkpGG~lvis---ik~~~~d~t~~~---~e~~~~-~~~~L~~~gf~~~~~~~l-~p~~~--------- 221 (232)
T 3id6_C 159 QTDIAIYNAKFFLKVNGDMLLV---IKARSIDVTKDP---KEIYKT-EVEKLENSNFETIQIINL-DPYDK--------- 221 (232)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EC-------CCS---SSSTTH-HHHHHHHTTEEEEEEEEC-TTTCS---------
T ss_pred HHHHHHHHHHHhCCCCeEEEEE---EccCCcccCCCH---HHHHHH-HHHHHHHCCCEEEEEecc-CCCcC---------
Confidence 4443 45566699999999853 111110001111 122333 445566789999986642 23332
Q ss_pred cceEEEEEEEc
Q 016155 374 YFTAFWTMRKK 384 (394)
Q Consensus 374 Y~~~f~va~K~ 384 (394)
+-.+.|++|+
T Consensus 222 -~h~~v~~~~~ 231 (232)
T 3id6_C 222 -DHAIVLSKYK 231 (232)
T ss_dssp -SCEEEEEEEC
T ss_pred -ceEEEEEEeC
Confidence 3455667764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-12 Score=115.07 Aligned_cols=104 Identities=20% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++-.+.. .
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~---~----------------------------- 81 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE---E----------------------------- 81 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH---h-----------------------------
Confidence 56799999999999999999884 5799999999999766522110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhH------HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNI------VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt---a~ni------~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|+.++.......++||.|+..| .+. .... ..+++.++++|||||+++-
T Consensus 82 -------~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~-~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 82 -------GLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF-PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp -------TCSSEEEECSCHHHHHHHHSCTTCEEEEEEES-CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCcEEEEECCHHHHHHHHcCCCChheEEEeC-CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence 01247899999888521002368999998664 222 1111 1599999999999999974
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=124.77 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=80.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHhhhhhccccc-cccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETA-GEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~-v~G~D~S~~ML~~s~filn~~~~~-~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..+|.. |.. |+|+|+|..|+..|+-......+. ..+ .+
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~--------------------Gl--- 229 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY--------------------GK--- 229 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH--------------------TB---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh--------------------CC---
Confidence 6789999999999999999964 775 999999999998877543221100 000 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
...++.|+.|||.++... ..-..||+|+...++- .+++...|.+++++|||||++|-.-
T Consensus 230 --------~~~rVefi~GD~~~lp~~-d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 230 --------KHAEYTLERGDFLSEEWR-ERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp --------CCCEEEEEECCTTSHHHH-HHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred --------CCCCeEEEECcccCCccc-cccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEee
Confidence 013489999999886320 0014799998754332 3578889999999999999999643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=114.20 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=98.8
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ ..|+.. +.+
T Consensus 192 ~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-------a~~----------------- 244 (368)
T 3reo_A 192 KKILEMYNGF--EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQD-------APA----------------- 244 (368)
T ss_dssp HHHHTTCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCC-----------------
T ss_pred HHHHHhcccc--cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHh-------hhh-----------------
Confidence 4444445421 25679999999999999999996 568999999 778621 100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+++++.|||.+- .| .+ |+|+..+.|. ..++....|++++++|||||++|
T Consensus 245 ---------------------~~~v~~~~~d~~~~--~p--~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~ 297 (368)
T 3reo_A 245 ---------------------FSGVEHLGGDMFDG--VP--KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVI 297 (368)
T ss_dssp ---------------------CTTEEEEECCTTTC--CC--CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---------------------cCCCEEEecCCCCC--CC--CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 02378999999872 22 23 9998887665 44567789999999999999998
Q ss_pred EecCcchh------------hhh--ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYH------------FAD--LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh------------~~~--~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-...+.-. ..+ .... .....+.+.+|++++++++||++++..
T Consensus 298 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 298 VAEYILPPSPDPSIATKVVIHTDALMLAY-NPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp EEECCCCSSCCCCHHHHHHHHHHHHHHHH-SSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeccCCCCCCchhhhHHHhhhHHHHhh-cCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 54322100 000 0000 001346799999999999999998865
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-11 Score=108.04 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||++ |..|+|+|+|..|+..++..+...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 106 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA------------------------------- 106 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 889999999999997766332210
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-C-CCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-P-SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-~-~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
...+++.++.||+.+.... + ...+.||+|+.... .++...+++.+.++|||||++|--.++
T Consensus 107 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 107 -------NLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 0112478899998764210 0 01267999975432 345679999999999999998865554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=106.26 Aligned_cols=104 Identities=19% Similarity=0.102 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..++++| ..|+|+|+|..|+..++..+...
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 90 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------------------------------- 90 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 45699999999999999999998 48999999999997766332110
Q ss_pred CCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec-ccCChhhHHHHHHHH--HHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF-FIDTAHNIVEYIEII--SRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~f-FlDta~ni~~yl~~I--~~~LKpGG~wIN 314 (394)
....++.++.+|+.+... .+...++||+|++.. |. ..+..+.++.+ .++|||||+++-
T Consensus 91 -----~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 91 -----KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEE
Confidence 001247889999887431 001147899999763 22 12344556666 889999999984
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=109.00 Aligned_cols=101 Identities=15% Similarity=0.003 Sum_probs=73.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
+.+|||+|||+|.++..++.+|. .|+|+|+|..|+..++..+... .
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~--------------------------~------- 101 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL--------------------------K------- 101 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 46899999999999999999986 8999999999997766322110 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHH--hccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR--ILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~--~LKpGG~wIN 314 (394)
. .++.++.+|+.++.. ...++||+|+...-.. ..+..+.++.+.+ +|||||+++-
T Consensus 102 -----~-~~v~~~~~D~~~~~~--~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 102 -----A-GNARVVNSNAMSFLA--QKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp -----C-CSEEEECSCHHHHHS--SCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----C-CcEEEEECCHHHHHh--hcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEE
Confidence 0 237889999887432 2357899998753211 2345677888865 5999999984
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=113.81 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=88.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||.+ +..|+|+|+|..|+..|+..+...
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 112 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-------------------------------- 112 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4669999999999999999987 789999999999998776332110
Q ss_pred CCCCCCCCCCceeEEeccccc-ccC-CCCC-CCCccEEEEe--cccCC--h-----hh------HHHHHHHHHHhccCCc
Q 016155 249 IHPASAGITEGFSMCGGDFVE-VYS-DPSQ-VGAWDAVVTC--FFIDT--A-----HN------IVEYIEIISRILKDGG 310 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~e-ly~-~~~~-~~~fD~VvT~--fFlDt--a-----~n------i~~yl~~I~~~LKpGG 310 (394)
...+++.++.+|+.+ +.. .+.. .++||+|++. |+-.. . .+ ....+..++++|||||
T Consensus 113 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG 186 (254)
T 2h00_A 113 ------NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGG 186 (254)
T ss_dssp ------TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHT
T ss_pred ------CCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCC
Confidence 011237888899765 221 1111 2689999987 33211 0 11 1245678899999999
Q ss_pred EEEEecCcch---hhhhccCC-CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 311 VWINLGPLLY---HFADLYGQ-EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 311 ~wIN~GPLly---h~~~~~g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.-+.+++- .+-...+- .......-+.+++.+++++.||+.++..
T Consensus 187 ~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 187 ELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 8763322110 00000000 0001122355899999999999887754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=118.29 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|.|. |+..++..+...
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------------------------------- 95 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------------------------------- 95 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT---------------------------------
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999987 899999995 876555332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl--Dta~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.+|+.++.. .++||+|++...+ -..+++.+.+..+.++|||||++|
T Consensus 96 -----~l~~~v~~~~~d~~~~~~----~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 96 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEEcchhhCCC----CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 011347889999988632 2689999987322 233457788889999999999998
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=111.11 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=86.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..|....+. +++.+|||+|||+|..+..||+. |..|+++|+|..|+..++-.+...
T Consensus 43 ~~l~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------- 104 (221)
T 3dr5_A 43 QLLTTLAATTNG---NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--------------- 104 (221)
T ss_dssp HHHHHHHHHSCC---TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhhCC---CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 366666665432 13559999999999999999985 689999999999997776332210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCC-CceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGIT-EGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~-~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
... .++.++.||+.++... ...++||+|+... ...+..+|++.+.++|||||
T Consensus 105 -----------------------g~~~~~i~~~~gda~~~l~~-~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 105 -----------------------GYSPSRVRFLLSRPLDVMSR-LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGG 157 (221)
T ss_dssp -----------------------TCCGGGEEEECSCHHHHGGG-SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEE
T ss_pred -----------------------CCCcCcEEEEEcCHHHHHHH-hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCc
Confidence 111 3488999999886421 1257899996432 23457789999999999999
Q ss_pred EEEEecCcchh
Q 016155 311 VWINLGPLLYH 321 (394)
Q Consensus 311 ~wIN~GPLlyh 321 (394)
++|-- -++|+
T Consensus 158 ~lv~d-n~~~~ 167 (221)
T 3dr5_A 158 ALVLA-DALLD 167 (221)
T ss_dssp EEEET-TTTGG
T ss_pred EEEEe-CCCCC
Confidence 99943 33443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=112.00 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccc--------cccccccccCCCCc-
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWN--------IYPWIHSNCNSLSD- 237 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~--------i~Pfi~~~sn~~~~- 237 (394)
++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..|+..+...... ... .|-..-..+...+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA-GLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc-cccccchhhhhhhhhcccccchhhhh
Confidence 4579999999999999999987 678999999999998777433211000 000 00000000000000
Q ss_pred -ccCcc-ccccCCCCCCCCCCCCceeEEecccccccCCC--CCCCCccEEEEec-cc--CC------hhhHHHHHHHHHH
Q 016155 238 -SDQLR-PVSIPDIHPASAGITEGFSMCGGDFVEVYSDP--SQVGAWDAVVTCF-FI--DT------AHNIVEYIEIISR 304 (394)
Q Consensus 238 -~~qlr-~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~--~~~~~fD~VvT~f-Fl--Dt------a~ni~~yl~~I~~ 304 (394)
..+++ .++.... .....+..+|+.+..... ...++||+|++.. |+ .. ......+++.+++
T Consensus 130 ~~~~v~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 130 AARRLRERLTAEGG-------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHTTS-------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccc-------ccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 00000 0000000 000238899988743100 0134899999873 22 21 3556789999999
Q ss_pred hccCCcEEEE
Q 016155 305 ILKDGGVWIN 314 (394)
Q Consensus 305 ~LKpGG~wIN 314 (394)
+|||||+++-
T Consensus 203 ~LkpgG~l~~ 212 (250)
T 1o9g_A 203 ALPAHAVIAV 212 (250)
T ss_dssp HSCTTCEEEE
T ss_pred hcCCCcEEEE
Confidence 9999999985
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=100.64 Aligned_cols=121 Identities=18% Similarity=0.074 Sum_probs=87.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 95 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF--------------------------------- 95 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999987 5999999999997665221100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
+.++.++.+|+.++. ++||+|++. |+.........+++.+.++| ||+++.. ..
T Consensus 96 -------~~~~~~~~~d~~~~~------~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~------~~---- 150 (207)
T 1wy7_A 96 -------KGKFKVFIGDVSEFN------SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH------LA---- 150 (207)
T ss_dssp -------TTSEEEEESCGGGCC------CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE------EC----
T ss_pred -------CCCEEEEECchHHcC------CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE------eC----
Confidence 003788999988741 489999987 44433344568899999999 7766632 00
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
-.-+.+.+.+++.+.||++...
T Consensus 151 ------~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 151 ------KPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ------CcCCHHHHHHHHHHCCCeEEEE
Confidence 0114566778889999988763
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-10 Score=107.34 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++..+.... + .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~---------------~-----~--------- 86 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD---------------N-----A--------- 86 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG---------------G-----T---------
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh---------------h-----C---------
Confidence 56799999999999999999995 689999999999977663211000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccC----CCCCCCCccEEEEe--cccC----------------ChhhHHHHHHHHHHhc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYS----DPSQVGAWDAVVTC--FFID----------------TAHNIVEYIEIISRIL 306 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~----~~~~~~~fD~VvT~--fFlD----------------ta~ni~~yl~~I~~~L 306 (394)
...+++.++.+|+.++.. .+...++||+|++. ||.. ...++.++++.+.++|
T Consensus 87 ------~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 87 ------AFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM 160 (260)
T ss_dssp ------TTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred ------CCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence 011247889999987621 01125789999987 4432 1123678999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
||||+++-+-|. -..+++.+++.+. |..++...
T Consensus 161 kpgG~l~~~~~~-----------------~~~~~~~~~l~~~-~~~~~i~~ 193 (260)
T 2ozv_A 161 VSGGQLSLISRP-----------------QSVAEIIAACGSR-FGGLEITL 193 (260)
T ss_dssp EEEEEEEEEECG-----------------GGHHHHHHHHTTT-EEEEEEEE
T ss_pred CCCCEEEEEEcH-----------------HHHHHHHHHHHhc-CCceEEEE
Confidence 999999852110 1346788888764 87666443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=112.34 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=97.2
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccc
Q 016155 151 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227 (394)
Q Consensus 151 ~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf 227 (394)
..|+..+..+...+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+.... .
T Consensus 82 ~~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--g------- 149 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY--G------- 149 (280)
T ss_dssp CCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH--T-------
T ss_pred eecHHHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc--C-------
Confidence 3566666776666542 25679999999999999999996 6899999999999976663221100 0
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 228 i~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
....++.+..+|+.+.. ...+.||+|+... ++..++++.+.++||
T Consensus 150 ---------------------------~~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~ 194 (280)
T 1i9g_A 150 ---------------------------QPPDNWRLVVSDLADSE---LPDGSVDRAVLDM-----LAPWEVLDAVSRLLV 194 (280)
T ss_dssp ---------------------------SCCTTEEEECSCGGGCC---CCTTCEEEEEEES-----SCGGGGHHHHHHHEE
T ss_pred ---------------------------CCCCcEEEEECchHhcC---CCCCceeEEEECC-----cCHHHHHHHHHHhCC
Confidence 00123778889988753 2357899998732 244578999999999
Q ss_pred CCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 016155 308 DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 354 (394)
Q Consensus 308 pGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~-~GF~ii~ 354 (394)
|||+++-+.|..- ...++...+.+ .||..++
T Consensus 195 pgG~l~~~~~~~~----------------~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 195 AGGVLMVYVATVT----------------QLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp EEEEEEEEESSHH----------------HHHHHHHHHHHHSSBCCCE
T ss_pred CCCEEEEEeCCHH----------------HHHHHHHHHHhcCCcCCcE
Confidence 9999986544210 23455555555 7897655
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-10 Score=111.00 Aligned_cols=141 Identities=18% Similarity=0.084 Sum_probs=96.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..|+++. -.++..|+ +.|+..++..+..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--------------------------------- 224 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--------------------------------- 224 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------------------------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------------------------------
Confidence 45699999999999999999995 45667777 6677655422110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcch------
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLY------ 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLly------ 320 (394)
...++++++.|||.+-. ...+|+|+....|.. .+...+.|+++++.|||||++|-+.+++-
T Consensus 225 ------~~~~rv~~~~gD~~~~~-----~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~ 293 (353)
T 4a6d_A 225 ------QEEEQIDFQEGDFFKDP-----LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP 293 (353)
T ss_dssp --------CCSEEEEESCTTTSC-----CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC
T ss_pred ------cccCceeeecCccccCC-----CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC
Confidence 11245899999998632 235799988776643 34567899999999999999986443221
Q ss_pred ---hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 321 ---HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 321 ---h~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.+..--.-....+.|.+|++++++++||++++..
T Consensus 294 ~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 294 LLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 111100000001346799999999999999999865
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=114.66 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=99.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
...+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ ..|+.. +.+
T Consensus 189 ~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-------a~~---------------- 242 (364)
T 3p9c_A 189 TKKLLELYHGF--EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISE-------APQ---------------- 242 (364)
T ss_dssp HHHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCC----------------
T ss_pred HHHHHHhcccc--cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHh-------hhh----------------
Confidence 34444555422 25679999999999999999986 568999999 777621 100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~w 312 (394)
..++.++.|||.+ . .| .+ |+|+..+.|. ..++....|++++++|||||++
T Consensus 243 ----------------------~~~v~~~~~D~~~-~-~p--~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 294 (364)
T 3p9c_A 243 ----------------------FPGVTHVGGDMFK-E-VP--SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKV 294 (364)
T ss_dssp ----------------------CTTEEEEECCTTT-C-CC--CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ----------------------cCCeEEEeCCcCC-C-CC--CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 0247899999987 2 22 23 9999887665 4466789999999999999999
Q ss_pred EEecCcc---------hh---hhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INLGPLL---------YH---FADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~GPLl---------yh---~~~~-~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+-...++ +. ..+. .........+.+.+|++++++++||++++..
T Consensus 295 ~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 351 (364)
T 3p9c_A 295 VLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKST 351 (364)
T ss_dssp EEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 8533221 00 0000 0000001346799999999999999999865
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-11 Score=107.73 Aligned_cols=109 Identities=19% Similarity=0.081 Sum_probs=81.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
.+.+++.+.+.+... ++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++..+..
T Consensus 55 ~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~----------------- 114 (231)
T 1vbf_A 55 ALNLGIFMLDELDLH---KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY----------------- 114 (231)
T ss_dssp CHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-----------------
T ss_pred CHHHHHHHHHhcCCC---CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh-----------------
Confidence 445666666665432 567999999999999999999999999999999999766532210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.+ ++.+..+|+.+... ..++||+|++...+.... +.+.++|||||++
T Consensus 115 -----------------------~~-~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l 161 (231)
T 1vbf_A 115 -----------------------YN-NIKLILGDGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIM 161 (231)
T ss_dssp -----------------------CS-SEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEE
T ss_pred -----------------------cC-CeEEEECCcccccc---cCCCccEEEECCcHHHHH------HHHHHHcCCCcEE
Confidence 01 37788899877321 247899999887665433 4688999999999
Q ss_pred EE
Q 016155 313 IN 314 (394)
Q Consensus 313 IN 314 (394)
|-
T Consensus 162 ~~ 163 (231)
T 1vbf_A 162 IL 163 (231)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=108.72 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..+.... ++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++..+...
T Consensus 55 ~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 112 (225)
T 3tr6_A 55 LLALLVKLM------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA---------------- 112 (225)
T ss_dssp HHHHHHHHH------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 555555443 3569999999999999999998 889999999999997766433210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG 309 (394)
...+++.++.+|+.+.... +...++||+|+... ...+...+++.+.++||||
T Consensus 113 ----------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 113 ----------------------GLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREG 167 (225)
T ss_dssp ----------------------TCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEE
T ss_pred ----------------------CCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCC
Confidence 0112378899998765310 00117899997322 2456788999999999999
Q ss_pred cEEEEecC
Q 016155 310 GVWINLGP 317 (394)
Q Consensus 310 G~wIN~GP 317 (394)
|++|-...
T Consensus 168 G~lv~~~~ 175 (225)
T 3tr6_A 168 GLIAVDNV 175 (225)
T ss_dssp EEEEEECS
T ss_pred cEEEEeCC
Confidence 99995433
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=114.67 Aligned_cols=139 Identities=11% Similarity=0.122 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|+++. ..++++|++ .|+. + .... .
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~---~~~~-------------------------~----- 227 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--R---HRLD-------------------------A----- 227 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--T---CCCC-------------------------C-----
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--c---cccc-------------------------c-----
Confidence 56799999999999999999964 567899995 4431 1 0000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcchh-----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLLYH----- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLlyh----- 321 (394)
.....++.+..+||.+- . . .||+|+....+...++ ....|++++++|||||++|-..+..-.
T Consensus 228 -----~~~~~~v~~~~~d~~~~--~---p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~ 296 (348)
T 3lst_A 228 -----PDVAGRWKVVEGDFLRE--V---P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH 296 (348)
T ss_dssp -----GGGTTSEEEEECCTTTC--C---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC
T ss_pred -----cCCCCCeEEEecCCCCC--C---C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc
Confidence 01123589999999732 1 2 8999998876654433 479999999999999999854322100
Q ss_pred ---hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 ---FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ---~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.+..........+.+.+|++++++++||++++..
T Consensus 297 ~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 334 (348)
T 3lst_A 297 QSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV 334 (348)
T ss_dssp HHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 00000000001346799999999999999998865
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=112.73 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=91.7
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhcccccccc
Q 016155 145 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEW 222 (394)
Q Consensus 145 g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~ 222 (394)
...||=.+|.++-+.+..+++ ...+|||+|||+|-+|..++.. +..++|+|+|..|+.+++-.+...
T Consensus 28 STReRLp~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------ 96 (200)
T 3fzg_A 28 STNERVATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------ 96 (200)
T ss_dssp HHHTTGGGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS------
T ss_pred CHHHHhHhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 356777778888888888776 4669999999999999999888 789999999999998877443211
Q ss_pred ccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHH
Q 016155 223 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEII 302 (394)
Q Consensus 223 ~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I 302 (394)
....++.+ +|+.+.. ..+.||+|+..-.|....+....+..|
T Consensus 97 --------------------------------g~~~~v~~--~d~~~~~----~~~~~DvVLa~k~LHlL~~~~~al~~v 138 (200)
T 3fzg_A 97 --------------------------------KTTIKYRF--LNKESDV----YKGTYDVVFLLKMLPVLKQQDVNILDF 138 (200)
T ss_dssp --------------------------------CCSSEEEE--ECCHHHH----TTSEEEEEEEETCHHHHHHTTCCHHHH
T ss_pred --------------------------------CCCccEEE--ecccccC----CCCCcChhhHhhHHHhhhhhHHHHHHH
Confidence 00112333 5655432 247899999876555555555677799
Q ss_pred HHhccCCcEEEEec
Q 016155 303 SRILKDGGVWINLG 316 (394)
Q Consensus 303 ~~~LKpGG~wIN~G 316 (394)
++.|||||++|++.
T Consensus 139 ~~~L~pggvfISfp 152 (200)
T 3fzg_A 139 LQLFHTQNFVISFP 152 (200)
T ss_dssp HHTCEEEEEEEEEE
T ss_pred HHHhCCCCEEEEeC
Confidence 99999999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=107.05 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++-.+...
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 120 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA------------------------------- 120 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3569999999999999999987 679999999999997766332210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-CCCCC--CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-DPSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-~~~~~--~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
....++.++.+|+.+... .+... ++||+|+... ...+...+++.+.++|||||++|-.
T Consensus 121 -------g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 121 -------GVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDA---DKRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECS---CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECC---CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 001237788899765321 11112 6899997532 2356789999999999999999853
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-11 Score=115.71 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=97.2
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..|.+.++.. .+..+|||+|||+|+++..|++++ ..++++|+ ..|+..++
T Consensus 198 ~~l~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------------------------- 249 (372)
T 1fp1_D 198 KRMLEIYTGF--EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------------------------- 249 (372)
T ss_dssp HHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------------------------
T ss_pred HHHHHHhhcc--CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-------------------------
Confidence 4444555422 256799999999999999999986 46778899 88872111
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wI 313 (394)
. . .++.++.+||.+ . .| . ||+|+....|...++ ....|++++++|||||++|
T Consensus 250 -------~--~-----------~~v~~~~~d~~~-~-~~---~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 250 -------P--L-----------SGIEHVGGDMFA-S-VP---Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp -------C--C-----------TTEEEEECCTTT-C-CC---C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -------h--c-----------CCCEEEeCCccc-C-CC---C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 0 0 137889999987 2 22 3 999998877664444 4499999999999999998
Q ss_pred EecCcc-----------hh-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLL-----------YH-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLl-----------yh-~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-..+.. +. ..+..........+.+.+|++++++++||++++..
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 358 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 532110 00 00000000001235699999999999999998765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=113.80 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=93.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++ . .
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------------------------~--~-- 230 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS--------------------------------G--S-- 230 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------------------------C--B--
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc--------------------------------c--C--
Confidence 4579999999999999999987 678999999 88873111 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccC---CcEEEEecCcch---
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKD---GGVWINLGPLLY--- 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKp---GG~wIN~GPLly--- 320 (394)
.++.+..+||.+ . .| .||+|+....|....+ ....|++++++||| ||++|-..+..-
T Consensus 231 ---------~~v~~~~~d~~~-~-~p----~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 295 (352)
T 1fp2_A 231 ---------NNLTYVGGDMFT-S-IP----NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295 (352)
T ss_dssp ---------TTEEEEECCTTT-C-CC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred ---------CCcEEEeccccC-C-CC----CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCC
Confidence 127889999976 2 22 3999998876654444 44999999999999 999885432210
Q ss_pred ------hh---hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 321 ------HF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 321 ------h~---~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+ .+..-... ...+.+.+|++++++++||++++..
T Consensus 296 ~~~~~~~~~~~~d~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~ 339 (352)
T 1fp2_A 296 DENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKIS 339 (352)
T ss_dssp SCHHHHHHHHHHHHHGGGG-TCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CccchhhhHhhccHHHHhc-cCCCCCHHHHHHHHHHCCCCeeEEE
Confidence 00 00000000 0235789999999999999998755
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=111.60 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+-.+....+.. .
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~-----------------~---------- 98 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP-----------------A---------- 98 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST-----------------T----------
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH-----------------h----------
Confidence 5678999999999999999998 5789999999999977663322110000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh----h-----HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH----N-----IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~----n-----i~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|+.+........++||.|+.+| .|.-. . ...+++.++++|||||+++-
T Consensus 99 ------~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~-~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 99 ------GGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLF-PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp ------CCCTTEEEEECCTTTCHHHHCCTTCEEEEEEES-CC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeC-CCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 001248899999876211002358899997654 33211 0 13689999999999999984
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.6e-11 Score=106.19 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||+. |..|+|+|+|..|+..++-.+...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 104 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN------------------------------- 104 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-------------------------------
Confidence 3569999999999999999988 789999999999997766332210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.++.+|+.++.. ...+ ||+|+.... ..+...+++.+.++|||||++|-
T Consensus 105 -------~~~~~v~~~~~d~~~~~~--~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 105 -------GLIDRVELQVGDPLGIAA--GQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp -------SGGGGEEEEESCHHHHHT--TCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEE
T ss_pred -------CCCceEEEEEecHHHHhc--cCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEE
Confidence 001237889999877532 1236 999986532 34567899999999999999985
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-10 Score=111.44 Aligned_cols=125 Identities=14% Similarity=0.225 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||||||+|.++.++|..|. .|+|+|+|..|+..|+..+...
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-------------------------------- 264 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-------------------------------- 264 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 567899999999999999999998 8999999999998776332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cC---ChhhH-HHHHHHHHHhccCCcEEEEecCcch
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--ID---TAHNI-VEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF--lD---ta~ni-~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
....++.+..+|+.++.. ..++||+|++. |. +. ...++ .++++.+.++| +|+.++-
T Consensus 265 ------gl~~~i~~~~~D~~~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i------ 328 (373)
T 3tm4_A 265 ------GVLDKIKFIQGDATQLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI------ 328 (373)
T ss_dssp ------TCGGGCEEEECCGGGGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE------
T ss_pred ------CCCCceEEEECChhhCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE------
Confidence 011247899999998743 35789999986 32 21 22333 56788999989 3333331
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 321 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 321 h~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.-+.+.+++++.+.||+..+...
T Consensus 329 --------------~~~~~~~~~~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 329 --------------TTEKKAIEEAIAENGFEIIHHRV 351 (373)
T ss_dssp --------------ESCHHHHHHHHHHTTEEEEEEEE
T ss_pred --------------ECCHHHHHHHHHHcCCEEEEEEE
Confidence 12567888899999999987653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-10 Score=112.09 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+... .
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~--------------------------g------- 199 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA--------------------------G------- 199 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 4569999999999999999999999999999999997766322100 0
Q ss_pred CCCCCCCC-ceeEEecccccccCC-CCCCCCccEEEEe---cccC-------ChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 251 PASAGITE-GFSMCGGDFVEVYSD-PSQVGAWDAVVTC---FFID-------TAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 251 p~~~~~~~-~ls~~~GDf~ely~~-~~~~~~fD~VvT~---fFlD-------ta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
..+ ++.++.+|+.++... ....++||+|+.. |-.. ...+..++++.+.++|||||+++-.-..
T Consensus 200 -----l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 200 -----LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp -----CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred -----CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 011 267899998775310 0013689999974 2221 2345678899999999999996531100
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHH----hCCCEEEEEe
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVAL----HYGFEFEKEK 356 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~----~~GF~ii~e~ 356 (394)
...++.+++.+++. +.|+++...+
T Consensus 275 --------------~~~~~~~~~~~~l~~a~~~~g~~v~~~e 302 (332)
T 2igt_A 275 --------------SIRASFYSMHELMRETMRGAGGVVASGE 302 (332)
T ss_dssp --------------CTTSCHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred --------------CCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 12345555555555 7899887544
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-10 Score=105.67 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=100.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+..|.++++ ++.+|||+|||+|.++..||++|. .|+|+|+|..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~----~-------------- 68 (230)
T 3lec_A 12 LQKVANYVP-----KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE----H-------------- 68 (230)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 456666665 467999999999999999999985 699999999999877632211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..||.++... ..+.||+|+.+=-. +.-+.+.++.....|+++|+||-
T Consensus 69 --------------------gl~~~I~~~~gD~l~~~~---~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIl 123 (230)
T 3lec_A 69 --------------------GLTSKIDVRLANGLSAFE---EADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLVL 123 (230)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCCcEEEEECchhhccc---cccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEE
Confidence 112348899999887643 23479998754321 23477889999999999999994
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.| ....+++++.+.+.||++++|.
T Consensus 124 -qp-----------------~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 124 -QP-----------------NNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp -EE-----------------SSCHHHHHHHHHHTTEEEEEEE
T ss_pred -EC-----------------CCChHHHHHHHHHCCCEEEEEE
Confidence 12 1358899999999999999977
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=120.35 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=85.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
..++..+.+.+.. .++.+|||+|||+|+++..||++ |. .|+|+|+|..|+..|.-++..+.+...
T Consensus 228 p~~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~---------- 294 (433)
T 1u2z_A 228 PNFLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK---------- 294 (433)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH----------
Confidence 4566666665543 26779999999999999999996 64 699999999999877444332221000
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecc-cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GD-f~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
...+. ..++.++.|| +.+....+...+.||+|+...++ ..+++...|+++.++|||||
T Consensus 295 ---------~~Gl~-----------~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 295 ---------LYGMR-----------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGC 353 (433)
T ss_dssp ---------HTTBC-----------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTC
T ss_pred ---------HcCCC-----------CCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCe
Confidence 00000 0246777764 43210000013689999976444 23678889999999999999
Q ss_pred EEEEecC
Q 016155 311 VWINLGP 317 (394)
Q Consensus 311 ~wIN~GP 317 (394)
++|...|
T Consensus 354 ~lVi~d~ 360 (433)
T 1u2z_A 354 KIISLKS 360 (433)
T ss_dssp EEEESSC
T ss_pred EEEEeec
Confidence 9996433
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-10 Score=104.20 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=99.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
++.|.++++ ++.+|||+|||+|.++..+|+.|. .|+|+|++..|+..|+--+.. +
T Consensus 6 L~~l~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 62 (225)
T 3kr9_A 6 LELVASFVS-----QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA----H-------------- 62 (225)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 456666665 457999999999999999999985 699999999999877632211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..||.++-... .+.||+|+.+-- ...-+.+.++.....|+|||++|-
T Consensus 63 --------------------gl~~~i~~~~~d~l~~l~~---~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 63 --------------------GLKEKIQVRLANGLAAFEE---TDQVSVITIAGM--GGRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp --------------------TCTTTEEEEECSGGGGCCG---GGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEEE
T ss_pred --------------------CCCceEEEEECchhhhccc---CcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 1123478899998764321 136999886532 233367889999999999999984
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-| . ...+.+++.+.+.||.++.+.
T Consensus 118 -q~----------------~-~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 118 -QP----------------N-NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp -EE----------------S-SCHHHHHHHHHHTTEEEEEEE
T ss_pred -EC----------------C-CCHHHHHHHHHHCCCEEEEEE
Confidence 11 1 367899999999999999976
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=104.14 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
+.++..+.+.+.. .++.+|||+|||+|.++..|++.+ ..|+|+|+|..|+..++..+...
T Consensus 63 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------- 125 (215)
T 2yxe_A 63 IHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL-------------- 125 (215)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 3455555555542 256799999999999999999987 79999999999997665332110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
. ..++.+..+|+.+... ..+.||+|+....+.... +.+.++|||||
T Consensus 126 ------------~-------------~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG 171 (215)
T 2yxe_A 126 ------------G-------------YDNVIVIVGDGTLGYE---PLAPYDRIYTTAAGPKIP------EPLIRQLKDGG 171 (215)
T ss_dssp ------------T-------------CTTEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEE
T ss_pred ------------C-------------CCCeEEEECCcccCCC---CCCCeeEEEECCchHHHH------HHHHHHcCCCc
Confidence 0 0126778888755322 246899999887665443 48899999999
Q ss_pred EEEE
Q 016155 311 VWIN 314 (394)
Q Consensus 311 ~wIN 314 (394)
++|-
T Consensus 172 ~lv~ 175 (215)
T 2yxe_A 172 KLLM 175 (215)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=115.94 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
....|.+.++.. .+.+|||+|||+|.++..++++| ..|+|+|+|..|+..++..+.. +
T Consensus 184 ~~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~----~------------- 243 (343)
T 2pjd_A 184 GSQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA----N------------- 243 (343)
T ss_dssp HHHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----h-------------
Confidence 445555555322 35689999999999999999998 5899999999999776632211 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-----ChhhHHHHHHHHHHhccC
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKD 308 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-----ta~ni~~yl~~I~~~LKp 308 (394)
. ....++.+|+.+.. .++||+|++..-+. +..+..++++.++++|||
T Consensus 244 ---------~--------------~~~~~~~~d~~~~~-----~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp 295 (343)
T 2pjd_A 244 ---------G--------------VEGEVFASNVFSEV-----KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295 (343)
T ss_dssp ---------T--------------CCCEEEECSTTTTC-----CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE
T ss_pred ---------C--------------CCCEEEEccccccc-----cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC
Confidence 0 01355778876632 47899999875333 345677899999999999
Q ss_pred CcEEEEecC
Q 016155 309 GGVWINLGP 317 (394)
Q Consensus 309 GG~wIN~GP 317 (394)
||.++-+.+
T Consensus 296 gG~l~i~~~ 304 (343)
T 2pjd_A 296 GGELRIVAN 304 (343)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEc
Confidence 999986443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=9e-10 Score=98.55 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=80.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++..+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------------------------------- 95 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------------------------------- 95 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------------------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------------------------
Confidence 567999999999999999999998 59999999999976552110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
++.++.+|+.++ + ++||+|++. |+.-......++++.+.++| |++++-..|
T Consensus 96 ---------~~~~~~~d~~~~---~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~---------- 148 (200)
T 1ne2_A 96 ---------GVNFMVADVSEI---S---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA---------- 148 (200)
T ss_dssp ---------TSEEEECCGGGC---C---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEG----------
T ss_pred ---------CCEEEECcHHHC---C---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC----------
Confidence 257889998874 1 689999986 32222122347899999999 665553211
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
-+.+.+.+++...| ++..
T Consensus 149 --------~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 149 --------KARDFLRREFSARG-DVFR 166 (200)
T ss_dssp --------GGHHHHHHHHHHHE-EEEE
T ss_pred --------chHHHHHHHHHHCC-CEEE
Confidence 13566888888888 6655
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=106.46 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++..+...
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 101 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL-------------------------------- 101 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4569999999999999999998 689999999999997766332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
....++.+..+|+.+........+.||+|+...-.. +..++++.+.++|||||++|-.
T Consensus 102 ------~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 102 ------GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp ------TCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------CCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEE
Confidence 011237788899877421000146899998765543 5678999999999999999853
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-10 Score=105.00 Aligned_cols=134 Identities=14% Similarity=0.073 Sum_probs=99.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+..|.++++ ++.+|||+|||+|.++..||+.|- .|+|+|++..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 68 (244)
T 3gnl_A 12 LEKVASYIT-----KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS----S-------------- 68 (244)
T ss_dssp HHHHHTTCC-----SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 456666665 467999999999999999999985 699999999999877632211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..||.++... ..+.||+|+.+-- .+.-+.+.|+.....|+++|++|-
T Consensus 69 --------------------gl~~~I~v~~gD~l~~~~---~~~~~D~Iviagm--Gg~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 69 --------------------GLTEQIDVRKGNGLAVIE---KKDAIDTIVIAGM--GGTLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEE--CHHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCceEEEEecchhhccC---ccccccEEEEeCC--chHHHHHHHHHHHHHhCCCCEEEE
Confidence 112347889999887543 1236999886422 123477889999999999999984
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.| ....+++++.+.+.||.++.+.
T Consensus 124 -q~-----------------~~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 124 -QP-----------------NIAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp -EE-----------------SSCHHHHHHHHHHHTEEEEEEE
T ss_pred -Ec-----------------CCChHHHHHHHHHCCCEEEEEE
Confidence 11 1267899999999999998876
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=108.14 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=81.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.... ++.+|||+|||+|..+..||+. |..|+++|+|..|+..++-.+...
T Consensus 70 ll~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------- 127 (247)
T 1sui_A 70 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 127 (247)
T ss_dssp HHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 3569999999999999999987 789999999999997766332210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC---CCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS---QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~---~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
....++.++.||+.++.. ... ..++||+|+.... ..+...|++.+.++|||
T Consensus 128 ----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~Lkp 182 (247)
T 1sui_A 128 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKV 182 (247)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCT
T ss_pred ----------------------CCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCC
Confidence 011347889999877421 000 1478999975432 34677999999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 183 GG~lv~ 188 (247)
T 1sui_A 183 GGVIGY 188 (247)
T ss_dssp TCCEEE
T ss_pred CeEEEE
Confidence 999984
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=119.93 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..++..+.. +
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~----~----------------------------- 203 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKS----N----------------------------- 203 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHH----c-----------------------------
Confidence 567999999999999999999986 899999998 98666533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.++.+|+.++.. .++||+|++.. +....++..+.+..+.++|||||++|
T Consensus 204 -----gl~~~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 204 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEECchhhCcc----CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 011348899999988532 26899999863 33333456778888999999999998
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-10 Score=108.99 Aligned_cols=101 Identities=12% Similarity=0.266 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..++..+...
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~--------------------------------- 169 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH--------------------------------- 169 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 3468999999999999999998 889999999999998776332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCc---cEEEEec-ccCCh------------------hhHHHHHHHHH-Hhc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAW---DAVVTCF-FIDTA------------------HNIVEYIEIIS-RIL 306 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~f---D~VvT~f-FlDta------------------~ni~~yl~~I~-~~L 306 (394)
...+++.++.+|+.+... ++| |+|+++- |+... .+-.++++.|. +.|
T Consensus 170 -----~l~~~v~~~~~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l 239 (284)
T 1nv8_A 170 -----GVSDRFFVRKGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 239 (284)
T ss_dssp -----TCTTSEEEEESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred -----CCCCceEEEECcchhhcc-----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcC
Confidence 011237899999987432 578 9999872 32211 12237899999 999
Q ss_pred cCCcEEEE
Q 016155 307 KDGGVWIN 314 (394)
Q Consensus 307 KpGG~wIN 314 (394)
||||+++-
T Consensus 240 ~pgG~l~~ 247 (284)
T 1nv8_A 240 TSGKIVLM 247 (284)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999984
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-10 Score=113.04 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=81.8
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
...|.+.++.. .+.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+.. +.
T Consensus 211 ~~~ll~~l~~~---~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~----ng------------- 270 (375)
T 4dcm_A 211 ARFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM------------- 270 (375)
T ss_dssp HHHHHHTCCCS---CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH----HC-------------
T ss_pred HHHHHHhCccc---CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH----cC-------------
Confidence 34455555533 4579999999999999999999 68999999999999776633211 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--cc--CC-hhhHHHHHHHHHHhccCC
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FI--DT-AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--Fl--Dt-a~ni~~yl~~I~~~LKpG 309 (394)
+ + ...++.+..+|+.+.. ..++||+|++.. +- .. .....++|+.+.++||||
T Consensus 271 ---------l--~--------~~~~v~~~~~D~~~~~----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 271 ---------P--E--------ALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp ---------G--G--------GGGGEEEEECSTTTTC----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred ---------C--C--------cCceEEEEechhhccC----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence 0 0 0013678999988733 257899999873 21 11 122347899999999999
Q ss_pred cEEEEec
Q 016155 310 GVWINLG 316 (394)
Q Consensus 310 G~wIN~G 316 (394)
|+++-++
T Consensus 328 G~l~iv~ 334 (375)
T 4dcm_A 328 GELYIVA 334 (375)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9998644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=111.08 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||+. |..|+|+|+|..|+..++-.+...
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 108 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA------------------------------- 108 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-------------------------------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999984 689999999999975443221100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-C--CCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDP-S--QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~-~--~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.||+.++.... . ..++||+|+... ...+...|++.+.++|||||++|-
T Consensus 109 -------g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 109 -------KQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEEE
Confidence 11235889999998753200 0 037899996543 245677899999999999999984
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=101.28 Aligned_cols=46 Identities=13% Similarity=-0.080 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCH
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSY 203 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~ 203 (394)
.+++.++++ .-. +++.+|||+|||+|.++..|+++ +..|+|+|+|.
T Consensus 9 kl~~~~~~~-~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 9 KLIELDNKY-LFL--KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHHHH-CCC--CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHHHHc-CCC--CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 455555543 211 14679999999999999999987 47899999998
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=109.83 Aligned_cols=113 Identities=18% Similarity=0.109 Sum_probs=81.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.+++.+.+.+... ++.+|||+|||+|.++..||++|.. |+|+|+|..|+..++..+...
T Consensus 62 ~~~~~l~~~l~~~---~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------- 123 (317)
T 1dl5_A 62 SLMALFMEWVGLD---KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL--------------- 123 (317)
T ss_dssp HHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcCCC---CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3555555554322 5679999999999999999999876 999999999997666322110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
. ..++.+..+|+.+... ..++||+|++...+.... +.+.++|||||+
T Consensus 124 -----------------------g-~~~v~~~~~d~~~~~~---~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 124 -----------------------G-IENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGR 170 (317)
T ss_dssp -----------------------T-CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEEE
T ss_pred -----------------------C-CCCeEEEECChhhccc---cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcE
Confidence 0 0127788999887432 247899999887665443 578899999999
Q ss_pred EEE-ecCc
Q 016155 312 WIN-LGPL 318 (394)
Q Consensus 312 wIN-~GPL 318 (394)
++. ++|.
T Consensus 171 lvi~~~~~ 178 (317)
T 1dl5_A 171 VIVPINLK 178 (317)
T ss_dssp EEEEBCBG
T ss_pred EEEEECCC
Confidence 985 4443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-11 Score=109.84 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 172 PPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
+.+|||+|||+|..+..||++ +..|+|+|+|..|+..++ .
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~--------------------------------~-- 127 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------------------------------S-- 127 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------------------------------G--
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh--------------------------------c--
Confidence 469999999999999999987 789999999999963211 0
Q ss_pred cCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCChhhHHHHHHHHHH-hccCCcEEEEecCcchhh
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR-ILKDGGVWINLGPLLYHF 322 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~el--y~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~-~LKpGG~wIN~GPLlyh~ 322 (394)
...++.++.||+.++ ... ....+||+|+.... . .++..+|+.+++ +|||||++|-... ..+
T Consensus 128 ----------~~~~v~~~~gD~~~~~~l~~-~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~--~~~ 191 (236)
T 2bm8_A 128 ----------DMENITLHQGDCSDLTTFEH-LREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM--IPY 191 (236)
T ss_dssp ----------GCTTEEEEECCSSCSGGGGG-GSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC--HHH
T ss_pred ----------cCCceEEEECcchhHHHHHh-hccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC--ccc
Confidence 012478899998874 111 11247999875432 1 257789999997 9999999995321 111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhC--CCEEE
Q 016155 323 ADLYGQEDEMSIELSLEDVKRVALHY--GFEFE 353 (394)
Q Consensus 323 ~~~~g~~~~~~ieLS~eEl~~ll~~~--GF~ii 353 (394)
. ...+.+++.++++.. +|+++
T Consensus 192 ~----------~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 192 W----------YRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp H----------HHHCHHHHHHHHHTTTTTEEEE
T ss_pred c----------cccCHHHHHHHHHhCcccEEEc
Confidence 1 112345888888877 68875
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=106.43 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++-.+......+. . .
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-----------------~---~----- 103 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTA-----------------S---K----- 103 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC------------------C---C-----
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccc-----------------c---c-----
Confidence 56799999999999999999997 4799999999999766533221100000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---------HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n---------i~~yl~~I~~~LKpGG~wIN 314 (394)
..-.++.++.+|+.+........+.+|.|+.+| -|.... -.++++.+.++|||||+++-
T Consensus 104 ------~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 104 ------HGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCF-PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp ------STTTTEEEEECCTTSCGGGTSCTTCEEEEEEES-CCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCcEEEEeccHHHHHHHhccccccCEEEEEC-CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 001247889999877321113357899988553 222100 03789999999999999985
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=121.64 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+.+|||+|||.|.++..||++|+.|+|+|+|..||..|+-- +.+..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~---a~~~~------------------------------ 112 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRAL---AEENP------------------------------ 112 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HHTST------------------------------
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHH---HHhcC------------------------------
Confidence 457999999999999999999999999999999999887721 11100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH--HHHHHHHHhccCCcEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV--EYIEIISRILKDGGVW 312 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~--~yl~~I~~~LKpGG~w 312 (394)
..++.|..++..++.. +...++||+|+++-.|...++.. ..+..+.+.|+++|.-
T Consensus 113 ------~~~~~~~~~~~~~~~~-~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~ 169 (569)
T 4azs_A 113 ------DFAAEFRVGRIEEVIA-ALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQA 169 (569)
T ss_dssp ------TSEEEEEECCHHHHHH-HCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSE
T ss_pred ------CCceEEEECCHHHHhh-hccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccce
Confidence 1137889999887632 12357899999886555444432 2233455555555543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-10 Score=101.19 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..++-.+...
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 117 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------------------------------- 117 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-------------------------------
Confidence 4569999999999999999986 679999999999997766333210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-CCCC--CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-DPSQ--VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-~~~~--~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
....++.++.+|+.+... .+.. .++||+|+...- ..+...+++.+.++|||||++|-..
T Consensus 118 -------g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 118 -------EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred -------CCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 011247889999876421 0001 168999976322 3456789999999999999998544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=105.46 Aligned_cols=103 Identities=16% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..++..+...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN------------------------------- 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 679999999999997766433210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-C-----------CCCC--CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-D-----------PSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-~-----------~~~~--~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.+..+|+.+... . .+.. ++||+|+..+. .++..++++.+.++|||||++|
T Consensus 109 -------g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 109 -------GLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEE
Confidence 001236778888765311 0 0112 68999987643 4567799999999999999998
Q ss_pred E
Q 016155 314 N 314 (394)
Q Consensus 314 N 314 (394)
-
T Consensus 179 ~ 179 (239)
T 2hnk_A 179 A 179 (239)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=104.04 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=81.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.... +..+||++|||+|..+..||+. +..|+++|+|..|+..++-.+...
T Consensus 61 ~l~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------------- 118 (237)
T 3c3y_A 61 LMSFVLKLV------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA---------------- 118 (237)
T ss_dssp HHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 556655543 4569999999999999999987 789999999999997766333210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC---CCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS---QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~---~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
...+++.++.||+.++.. .+. ..++||+|+... ...+...|++.+.++|||
T Consensus 119 ----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~p 173 (237)
T 3c3y_A 119 ----------------------GVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKV 173 (237)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEE
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCC
Confidence 011247889999877421 000 147899997431 235678999999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 174 GG~lv~ 179 (237)
T 3c3y_A 174 GGIVAY 179 (237)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999984
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=103.84 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-------eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 243 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-------~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~ 243 (394)
++.+|||+|||+|.++..|++.+. .|+|+|+|..|+..++..+.... .. .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~-------------------~ 136 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK----PE-------------------L 136 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC----GG-------------------G
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC----cc-------------------c
Confidence 567999999999999999999865 99999999999977663322100 00 0
Q ss_pred cccCCCCCCCCCCCCceeEEeccccccc----CCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 244 VSIPDIHPASAGITEGFSMCGGDFVEVY----SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 244 v~iPDv~p~~~~~~~~ls~~~GDf~ely----~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+ ...++.+..+|+.+.. . ..+.||+|+....+.. +++.+.++|||||++|-
T Consensus 137 ~-----------~~~~v~~~~~d~~~~~~~~~~---~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 137 L-----------KIDNFKIIHKNIYQVNEEEKK---ELGLFDAIHVGASASE------LPEILVDLLAENGKLII 191 (227)
T ss_dssp G-----------SSTTEEEEECCGGGCCHHHHH---HHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEE
T ss_pred c-----------ccCCEEEEECChHhcccccCc---cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 0 0124788899987743 2 2468999987765543 35888999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=110.17 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccc----------c
Q 016155 171 SPPACLVPGAGLGR----LALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH----------S 230 (394)
Q Consensus 171 ~~~~VLvpGCGlGR----La~eLA~~------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~----------~ 230 (394)
++.+|||+|||+|. +|..|+.. |+.|+|+|+|..||..|+-- +||.-. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~~ 173 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG-----------IYRLSELKTLSPQQLQR 173 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT-----------EEEGGGGTTSCHHHHHH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhc-----------CCchhhhhcCCHHHHHH
Confidence 45799999999999 66666665 47999999999999877621 111000 0
Q ss_pred -ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 231 -NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 231 -~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
|.......+. .+.+ .+ ....++.|..+|+.+... + ..+.||+|++.. |++ .+...+.++.++++|
T Consensus 174 ~f~~~~~~~~~--~~~v---~~---~lr~~V~F~~~dl~~~~~-~-~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L 242 (274)
T 1af7_A 174 YFMRGTGPHEG--LVRV---RQ---ELANYVEFSSVNLLEKQY-N-VPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLL 242 (274)
T ss_dssp HEEECCTTSCS--EEEE---CH---HHHTTEEEEECCTTCSSC-C-CCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGE
T ss_pred HhhccccCCCC--ceee---ch---hhcccCeEEecccCCCCC-C-cCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHh
Confidence 0000000000 0000 00 011358999999887311 1 146899999864 344 344678999999999
Q ss_pred cCCcEEE
Q 016155 307 KDGGVWI 313 (394)
Q Consensus 307 KpGG~wI 313 (394)
||||+++
T Consensus 243 ~pgG~L~ 249 (274)
T 1af7_A 243 KPDGLLF 249 (274)
T ss_dssp EEEEEEE
T ss_pred CCCcEEE
Confidence 9999998
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=101.61 Aligned_cols=152 Identities=14% Similarity=0.041 Sum_probs=95.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+++.++++ ... +++.+|||+|||+|.++..||+++..|+|+|+|..+.
T Consensus 12 KL~ei~~~~-~~~--~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---------------------------- 60 (191)
T 3dou_A 12 KLEFLLDRY-RVV--RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---------------------------- 60 (191)
T ss_dssp HHHHHHHHH-CCS--CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC----------------------------
T ss_pred HHHHHHHHc-CCC--CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc----------------------------
Confidence 355555543 211 2578999999999999999999999999999996210
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC-----CC---CCCccEEEEecccCC--------h---hhH
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-----SQ---VGAWDAVVTCFFIDT--------A---HNI 295 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~-----~~---~~~fD~VvT~fFlDt--------a---~ni 295 (394)
..++.++.||+++..... .. .++||+|++....++ . ...
T Consensus 61 ----------------------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~ 118 (191)
T 3dou_A 61 ----------------------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIG 118 (191)
T ss_dssp ----------------------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHH
T ss_pred ----------------------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHH
Confidence 013678889987642100 00 148999998532221 1 123
Q ss_pred HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccc
Q 016155 296 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYF 375 (394)
Q Consensus 296 ~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~ 375 (394)
...++.+.++|||||.+|-. .| .. -...++...++. .|+-++..... .+ +....
T Consensus 119 ~~~l~~a~~~LkpGG~lv~k---~~--~~-----------~~~~~~~~~l~~-~F~~v~~~kP~---as------R~~s~ 172 (191)
T 3dou_A 119 QRVMEIAVRYLRNGGNVLLK---QF--QG-----------DMTNDFIAIWRK-NFSSYKISKPP---AS------RGSSS 172 (191)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---EE--CS-----------THHHHHHHHHGG-GEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHccCCCEEEEE---Ec--CC-----------CCHHHHHHHHHH-hcCEEEEECCC---Cc------cCCCc
Confidence 46788889999999999841 11 10 124677777755 58777643221 11 12336
Q ss_pred eEEEEEEEcC
Q 016155 376 TAFWTMRKKS 385 (394)
Q Consensus 376 ~~f~va~K~~ 385 (394)
..|+||++..
T Consensus 173 E~y~v~~~~~ 182 (191)
T 3dou_A 173 EIYIMFFGFK 182 (191)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEeeec
Confidence 6788988764
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=108.43 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..|+++ +..++++|+ ..|+. .+. . .
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~-------------------------~--~-- 235 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVG-------NLT-------------------------G--N-- 235 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHS-------SCC-------------------------C--C--
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHh-------hcc-------------------------c--C--
Confidence 4569999999999999999998 467999999 57862 110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccC---CcEEEEecCcch---
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKD---GGVWINLGPLLY--- 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKp---GG~wIN~GPLly--- 320 (394)
.++.+..+||.+ . .| .||+|+....|....+ ....|++++++||| ||++|-..+..-
T Consensus 236 ---------~~v~~~~~d~~~-~-~~----~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 300 (358)
T 1zg3_A 236 ---------ENLNFVGGDMFK-S-IP----SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300 (358)
T ss_dssp ---------SSEEEEECCTTT-C-CC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTC
T ss_pred ---------CCcEEEeCccCC-C-CC----CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCC
Confidence 127889999987 2 22 4999998876665444 55999999999999 998885332210
Q ss_pred ------hhh---hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 321 ------HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 321 ------h~~---~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+. +..-.......+.+.+|++++++++||++++..
T Consensus 301 ~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 301 DDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred ccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 000 000000000235699999999999999998865
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=101.16 Aligned_cols=108 Identities=17% Similarity=0.055 Sum_probs=75.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
+...+.+.+.. .++.+|||+|||+|.++..|++++ ..|+|+|+|..|+..++..+...
T Consensus 79 ~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 137 (235)
T 1jg1_A 79 MVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA------------------ 137 (235)
T ss_dssp HHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 44444444432 256799999999999999999997 89999999999997766332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. -.++.+..+|+..-.. ..+.||+|+...-+.... +.+.++|||||++|-
T Consensus 138 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi 187 (235)
T 1jg1_A 138 --------G-------------VKNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 187 (235)
T ss_dssp --------T-------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred --------C-------------CCCcEEEECCcccCCC---CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEE
Confidence 0 0126788888733221 124599999876554332 478899999999984
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-10 Score=100.60 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|+++ | ..|+|+|+|..|+..++..+.... +..
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------------------------~~~- 129 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD--------------------------PTL- 129 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC--------------------------THH-
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc--------------------------ccc-
Confidence 5679999999999999999987 4 689999999999976653321100 000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.+..+|+.+... ..+.||+|+....+.. .++.+.++|||||++|-
T Consensus 130 -------~~~~~v~~~~~d~~~~~~---~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 130 -------LSSGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLIL 180 (226)
T ss_dssp -------HHTSSEEEEESCGGGCCG---GGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEE
T ss_pred -------cCCCcEEEEECCcccCcc---cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 001237788899876432 2468999987655432 34688999999999985
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=107.20 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+|+++ +..|+++|+|..|+..++--+.... . .+.
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~--~----------------------gl~--- 172 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--I----------------------GYE--- 172 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--G----------------------GGG---
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--c----------------------ccC---
Confidence 4579999999999999999988 4689999999999987763221000 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~n--i~~yl~~I~~~LKpGG~wIN~ 315 (394)
..++.++.+|+.++.. ....++||+|++..+ +..+.. ..++++.++++|||||+++..
T Consensus 173 --------~~rv~~~~~D~~~~l~-~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 173 --------DPRVNLVIGDGVAFLK-NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp --------STTEEEEESCHHHHHH-TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred --------CCcEEEEECCHHHHHH-hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1247889999877421 112478999998654 222222 358999999999999999963
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.4e-10 Score=107.24 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+++++ +..|+++|+|..|+..++-.+..... . .+.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~----------------------~~~--- 130 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-G----------------------AFD--- 130 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-T----------------------GGG---
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-c----------------------ccc---
Confidence 4579999999999999999998 56899999999999776632210000 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-----a~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|+.+... ...++||+|+...+... +.. ..++++.++++|||||+++.
T Consensus 131 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 131 --------DPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp --------CTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred --------CCceEEEEchHHHHHH--hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence 1247889999887421 12578999998765432 122 36899999999999999984
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-09 Score=103.95 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+| |+|.++..+|.+|. .|+|+|+|..|+..++..+...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------------------------------- 218 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-------------------------------- 218 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 467999999 99999999999985 8999999999998776322110
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~e-ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
... ++.++.+|+.+ +.. ...++||+|++.--.... .+..+++.++++|||||.++-+. ...
T Consensus 219 ------g~~-~v~~~~~D~~~~l~~--~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~-----~~~--- 280 (373)
T 2qm3_A 219 ------GYE-DIEIFTFDLRKPLPD--YALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFG-----ITR--- 280 (373)
T ss_dssp ------TCC-CEEEECCCTTSCCCT--TTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEE-----ECT---
T ss_pred ------CCC-CEEEEEChhhhhchh--hccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEE-----Eec---
Confidence 001 37889999987 321 124689999976321111 36789999999999999542111 000
Q ss_pred CCCCccccCCH---HHHHHHHH-hCCCEEEE
Q 016155 328 QEDEMSIELSL---EDVKRVAL-HYGFEFEK 354 (394)
Q Consensus 328 ~~~~~~ieLS~---eEl~~ll~-~~GF~ii~ 354 (394)
..-+. +++.+++. +.||++..
T Consensus 281 ------~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 281 ------RESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp ------TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred ------CcCCHHHHHHHHHHHHHhcCcchhh
Confidence 01234 77888888 89998865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-10 Score=97.54 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C----------CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G----------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G----------f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ 239 (394)
++.+|||+|||+|.++..|+++ | ..|+|+|+|..+. +
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------~-------------------------- 69 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------L-------------------------- 69 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------C--------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------C--------------------------
Confidence 5679999999999999999998 5 6899999998320 0
Q ss_pred CccccccCCCCCCCCCCCCceeEE-ecccccccCC-----CCCCCCccEEEEecccCC----hhhH-------HHHHHHH
Q 016155 240 QLRPVSIPDIHPASAGITEGFSMC-GGDFVEVYSD-----PSQVGAWDAVVTCFFIDT----AHNI-------VEYIEII 302 (394)
Q Consensus 240 qlr~v~iPDv~p~~~~~~~~ls~~-~GDf~ely~~-----~~~~~~fD~VvT~fFlDt----a~ni-------~~yl~~I 302 (394)
.++.++ .+|+.+.... ....++||+|++.+-++. ..+. ...++.+
T Consensus 70 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (196)
T 2nyu_A 70 ------------------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT 131 (196)
T ss_dssp ------------------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 013445 5565442100 011358999998653222 1111 4789999
Q ss_pred HHhccCCcEEEE
Q 016155 303 SRILKDGGVWIN 314 (394)
Q Consensus 303 ~~~LKpGG~wIN 314 (394)
+++|||||++|-
T Consensus 132 ~~~LkpgG~lv~ 143 (196)
T 2nyu_A 132 PDILQPGGTFLC 143 (196)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHhcCCCEEEE
Confidence 999999999985
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-09 Score=105.44 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=92.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
..+.+.+.+.+... ++.+|||||||+|.++..++++ +..++|+|++..|+..+
T Consensus 25 ~~l~~~~~~~~~~~---~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------------- 80 (421)
T 2ih2_A 25 PEVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------------- 80 (421)
T ss_dssp HHHHHHHHHHCCCC---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------
T ss_pred HHHHHHHHHhhccC---CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------
Confidence 45777777776532 4569999999999999999984 57999999999885210
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-C--------hhhH----
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-T--------AHNI---- 295 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD-t--------a~ni---- 295 (394)
.++.++.+|+.+... .+.||+|+++ |+-. . ....
T Consensus 81 ---------------------------~~~~~~~~D~~~~~~----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~ 129 (421)
T 2ih2_A 81 ---------------------------PWAEGILADFLLWEP----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLY 129 (421)
T ss_dssp ---------------------------TTEEEEESCGGGCCC----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHH
T ss_pred ---------------------------CCCcEEeCChhhcCc----cCCCCEEEECcCccCcccccccccccCHHHHHHH
Confidence 126788999987532 4789999996 4311 1 1112
Q ss_pred --------------HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 296 --------------VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 296 --------------~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
..+++.+.++|||||+++-+-|--|-+. -..+++++.+.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~------------~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 130 KKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL------------EDFALLREFLAREGK 186 (421)
T ss_dssp HHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC------------GGGHHHHHHHHHHSE
T ss_pred HHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC------------ccHHHHHHHHHhcCC
Confidence 2568899999999999987655433211 135778998888887
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=108.71 Aligned_cols=136 Identities=8% Similarity=0.069 Sum_probs=90.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++.-+.. +
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~----n----------------------------- 258 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N----------------------------- 258 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999997 799999999999776632110 0
Q ss_pred CCCCCCCCC-ceeEEecccccccC-CCCCCCCccEEEEe--cc-------cCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 250 HPASAGITE-GFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FF-------IDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 250 ~p~~~~~~~-~ls~~~GDf~ely~-~~~~~~~fD~VvT~--fF-------lDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
.... ++.++.+|+.++.. .....++||+|+.. +| .+......+.++.+.++|||||+++-...
T Consensus 259 -----~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~- 332 (385)
T 2b78_A 259 -----HLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN- 332 (385)
T ss_dssp -----TCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC-
T ss_pred -----CCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC-
Confidence 0011 47889999877421 00113589999964 22 22234455678888999999999974210
Q ss_pred chhhhhccCCCCCccccCCHH----HHHHHHHhCCCEEEEEeecc
Q 016155 319 LYHFADLYGQEDEMSIELSLE----DVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~e----El~~ll~~~GF~ii~e~~i~ 359 (394)
+-.++.+ -+++.+..+|++++......
T Consensus 333 --------------~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 363 (385)
T 2b78_A 333 --------------AANMTVSQFKKQIEKGFGKQKHTYLDLQQLP 363 (385)
T ss_dssp --------------CTTSCHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred --------------CCcCCHHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 1123334 45556668899966654433
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=107.54 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=76.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+||++|||+|.++.+|+++ +..|+++|++..|+..++.-+.. +
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~-------------------------------~-- 136 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI-------------------------------P-- 136 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC-------------------------------C--
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc-------------------------------c--
Confidence 459999999999999999983 78999999999999776621100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|..++.. ....++||+|++-.|.. ....+ .++++.++++|||||+++.
T Consensus 137 ------~~~rv~v~~~Da~~~l~-~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 137 ------RAPRVKIRVDDARMVAE-SFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp ------CTTTEEEEESCHHHHHH-TCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCceEEEECcHHHHHh-hccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01248899999887532 12257899999865432 12222 5899999999999999983
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=104.04 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=99.6
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETA 219 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~ 219 (394)
|+.--..||.. + .+.+. ++.+|||+|||+|.++..+|++|. .|+|+|++..++..++.-+..
T Consensus 108 f~~~~~~er~r----i----~~~~~-----~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~---- 170 (278)
T 3k6r_A 108 FSPANVKERVR----M----AKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL---- 170 (278)
T ss_dssp CCGGGHHHHHH----H----HHHCC-----TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----
T ss_pred EcCCcHHHHHH----H----HHhcC-----CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH----
Confidence 77666667753 3 33332 577999999999999999999995 899999999998655522110
Q ss_pred cccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHH
Q 016155 220 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 299 (394)
Q Consensus 220 ~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl 299 (394)
+ ...+.+.++.+|..++.. .+.||.|+.. ..+.-.+++
T Consensus 171 N----------------------------------~v~~~v~~~~~D~~~~~~----~~~~D~Vi~~----~p~~~~~~l 208 (278)
T 3k6r_A 171 N----------------------------------KVEDRMSAYNMDNRDFPG----ENIADRILMG----YVVRTHEFI 208 (278)
T ss_dssp T----------------------------------TCTTTEEEECSCTTTCCC----CSCEEEEEEC----CCSSGGGGH
T ss_pred c----------------------------------CCCCcEEEEeCcHHHhcc----ccCCCEEEEC----CCCcHHHHH
Confidence 0 112347889999988643 4789988743 222334778
Q ss_pred HHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 300 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 300 ~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+...++|||||++.- |.+.... ....-..+.++++++..||++...
T Consensus 209 ~~a~~~lk~gG~ih~-----~~~~~e~-----~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 209 PKALSIAKDGAIIHY-----HNTVPEK-----LMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp HHHHHHEEEEEEEEE-----EEEEEGG-----GTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCCEEEE-----Eeeeccc-----ccchhHHHHHHHHHHHcCCcEEEE
Confidence 888999999997641 2222110 012345688889999999987653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.8e-10 Score=100.57 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-------eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-------~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
++.+|||+|||+|.++..|+++ |. .|+|+|+|..|+..++..+.... ..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~------------------- 140 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD----RS------------------- 140 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH----HH-------------------
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC----cc-------------------
Confidence 5679999999999999999984 53 89999999999977663322100 00
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 016155 243 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 317 (394)
Q Consensus 243 ~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~GP 317 (394)
.+. ..++.+..+|+.+.+. ..+.||+|+....+... ++.+.++|||||++|- +++
T Consensus 141 ~~~-----------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 141 MLD-----------SGQLLIVEGDGRKGYP---PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHH-----------HTSEEEEESCGGGCCG---GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccC-----------CCceEEEECCcccCCC---cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEec
Confidence 000 0136788899876322 13689999877655432 3788999999999984 443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=104.42 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++.+++++|. .|+++|+|..|+..++-.+ ... . .+ +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~--~----------------------~l--~~~ 127 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KID--N----------------------GL--LEA 127 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTT--T----------------------TH--HHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhc--c----------------------cc--ccc
Confidence 457999999999999999999864 8999999999997766322 100 0 00 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
. ......++.++.+|..+... . .++||+|+...+.. ....+ .++++.++++|||||+++.
T Consensus 128 ~--~~~~~~~v~~~~~D~~~~l~--~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 191 (281)
T 1mjf_A 128 M--LNGKHEKAKLTIGDGFEFIK--N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 191 (281)
T ss_dssp H--HTTCCSSEEEEESCHHHHHH--H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred c--ccCCCCcEEEEECchHHHhc--c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0 00001247889999876422 1 47899999765421 12222 6899999999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=106.19 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=81.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
.|+.....+...+.. .++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..++..+.... ..+.+
T Consensus 89 ~~~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~l---- 159 (336)
T 2b25_A 89 TFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR--DSWKL---- 159 (336)
T ss_dssp CCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH--HHHTT----
T ss_pred cCHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhh--ccccc----
Confidence 444444444443322 25679999999999999999998 5 789999999999977663322100 00000
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
| .+ . ....++.+..+|+.+... +...+.||+|+.... +...+++.+.++|||
T Consensus 160 ----n---------~~-----~----~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkp 211 (336)
T 2b25_A 160 ----S---------HV-----E----EWPDNVDFIHKDISGATE-DIKSLTFDAVALDML-----NPHVTLPVFYPHLKH 211 (336)
T ss_dssp ----T---------CS-----S----CCCCCEEEEESCTTCCC--------EEEEEECSS-----STTTTHHHHGGGEEE
T ss_pred ----c---------cc-----c----ccCCceEEEECChHHccc-ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCC
Confidence 0 00 0 011348889999887531 123468999987432 223478999999999
Q ss_pred CcEEEEecC
Q 016155 309 GGVWINLGP 317 (394)
Q Consensus 309 GG~wIN~GP 317 (394)
||++|-+.|
T Consensus 212 gG~lv~~~~ 220 (336)
T 2b25_A 212 GGVCAVYVV 220 (336)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEeC
Confidence 999996544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=103.17 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.++++.+ -.|+++|+|..|+..++-.+.... . ..
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~---------------------~---~~---- 129 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS---------------------C---GY---- 129 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS---------------------G---GG----
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhc---------------------c---cc----
Confidence 45799999999999999999883 689999999999977663221000 0 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni--~~yl~~I~~~LKpGG~wIN~ 315 (394)
...++.++.+|+.+... ...++||+|+...+.. .+..+ .++++.++++|||||+++..
T Consensus 130 -------~~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 130 -------EDKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp -------GSTTEEEEESCHHHHHH--HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCCcEEEEECChHHHHH--hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 01247889999877422 1257899999764422 23333 58999999999999999853
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-09 Score=100.63 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=76.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+.+.++.. ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+...
T Consensus 16 i~~~i~~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------- 73 (285)
T 1zq9_A 16 IINSIIDKAALR---PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT------------------- 73 (285)
T ss_dssp HHHHHHHHTCCC---TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTS-------------------
T ss_pred HHHHHHHhcCCC---CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 566666655432 5679999999999999999999999999999999997655221100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-hhHHHHH--------------H
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYI--------------E 300 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta-~ni~~yl--------------~ 300 (394)
....++.++.+|+.++.. ..||+|++..-.... +-+...+ +
T Consensus 74 -------------------~~~~~v~~~~~D~~~~~~-----~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qk 129 (285)
T 1zq9_A 74 -------------------PVASKLQVLVGDVLKTDL-----PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQR 129 (285)
T ss_dssp -------------------TTGGGEEEEESCTTTSCC-----CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEH
T ss_pred -------------------CCCCceEEEEcceecccc-----hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhH
Confidence 001247889999987532 379999987422211 1122333 2
Q ss_pred HH--HHhccCCcEEE
Q 016155 301 II--SRILKDGGVWI 313 (394)
Q Consensus 301 ~I--~~~LKpGG~wI 313 (394)
++ .++|||||.+.
T Consensus 130 Eva~r~vlkPGg~~y 144 (285)
T 1zq9_A 130 EFALRLVAKPGDKLY 144 (285)
T ss_dssp HHHHHHHCCTTCTTC
T ss_pred HHHHHHhcCCCCccc
Confidence 33 36999999763
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-10 Score=106.54 Aligned_cols=99 Identities=8% Similarity=0.001 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..+|++ ..|+|+|+|. |+.. +.+. + ++.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~-------a~~~-----------------------~--~~~-- 117 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVG-------GHEV-----------------------P--RIT-- 117 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCS-------SCCC-----------------------C--CCC--
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhh-------hhhh-----------------------h--hhh--
Confidence 5679999999999999999999 7899999998 7411 0000 0 000
Q ss_pred CCCCCCCCceeEE--ecccccccCCCCCCCCccEEEEecccCChh----h---HHHHHHHHHHhccCCc--EEEE
Q 016155 251 PASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFFIDTAH----N---IVEYIEIISRILKDGG--VWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~--~GDf~ely~~~~~~~~fD~VvT~fFlDta~----n---i~~yl~~I~~~LKpGG--~wIN 314 (394)
...+.++.++ .+|+.++. .++||+|++.+- .... + ....|+.++++||||| .||-
T Consensus 118 ---~~~~~~v~~~~~~~D~~~l~-----~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 118 ---ESYGWNIVKFKSRVDIHTLP-----VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ---CBTTGGGEEEECSCCTTTSC-----CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ---hccCCCeEEEecccCHhHCC-----CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 0011247888 89998753 478999998643 2111 1 1237899999999999 8884
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-10 Score=112.22 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=94.6
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCC------CChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAG------LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEW 222 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCG------lGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~ 222 (394)
.|.++.+.+.+.+.. ++.+|||+||| +|..+..+++. +..|+|+|+|..|.. +
T Consensus 201 ~y~~~Ye~lL~~l~~----~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~-------- 262 (419)
T 3sso_A 201 WFTPHYDRHFRDYRN----QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------D-------- 262 (419)
T ss_dssp BCHHHHHHHHGGGTT----SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------C--------
T ss_pred hHHHHHHHHHHhhcC----CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------c--------
Confidence 466677666554432 46799999999 88888888765 679999999998830 0
Q ss_pred ccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCChhhHHHHH
Q 016155 223 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYI 299 (394)
Q Consensus 223 ~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta~ni~~yl 299 (394)
..++.++.||+.++... ....++||+|++.. .....+...+|
T Consensus 263 ----------------------------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL 307 (419)
T 3sso_A 263 ----------------------------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSF 307 (419)
T ss_dssp ----------------------------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHH
T ss_pred ----------------------------------CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHH
Confidence 02378899998875210 00147899998753 33446788999
Q ss_pred HHHHHhccCCcEEEEecCcchhhhhccCCCC--CccccCCHHHHHHHHHhCCCE
Q 016155 300 EIISRILKDGGVWINLGPLLYHFADLYGQED--EMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 300 ~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~--~~~ieLS~eEl~~ll~~~GF~ 351 (394)
++++++|||||++|.... ...|-..+++.. ...-.-..+-+++++..+...
T Consensus 308 ~el~rvLKPGGvlVi~Dl-~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~ 360 (419)
T 3sso_A 308 AALFPHVRPGGLYVIEDM-WTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQ 360 (419)
T ss_dssp HHHGGGEEEEEEEEEECG-GGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGG
T ss_pred HHHHHhcCCCeEEEEEec-ccccCcccCCCccCCcchhHHHHHHHHHHHHhccc
Confidence 999999999999996332 222221222111 011223456677777766543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=104.28 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=105.5
Q ss_pred HHHHHHhhcCcc--cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCC--ChhHHHHHHc---CCeEEEEeCCHH
Q 016155 132 CIIRNIVRDWAA--EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGL--GRLALEISHL---GFISQGNEFSYY 204 (394)
Q Consensus 132 ~~L~q~~RDWS~--eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGl--GRLa~eLA~~---Gf~v~G~D~S~~ 204 (394)
..-.++.+-|.. ....+-...+...+.+|... ....+|||+|||+ |....++|++ +..|+|+|.|..
T Consensus 43 ~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~------~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~ 116 (277)
T 3giw_A 43 EAGDAMSREWPALPVHMRANRDWMNRAVAHLAKE------AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI 116 (277)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHT------SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccc------cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChH
Confidence 444455555553 22222223344455555421 1335899999998 5566777764 789999999999
Q ss_pred HHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCcc
Q 016155 205 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD 281 (394)
Q Consensus 205 ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely---~~~~~~~~fD 281 (394)
||..++-.+... ...++.|+.+|+.++. ..+...+.||
T Consensus 117 mLa~Ar~~l~~~---------------------------------------~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 117 VLTLSQGLLAST---------------------------------------PEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp HHHTTHHHHCCC---------------------------------------SSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred HHHHHHHHhccC---------------------------------------CCCcEEEEEecccChhhhhcccccccccC
Confidence 997666433110 0124789999998752 1010023454
Q ss_pred -----EEEEe---cccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch-h--------hhhccCCCCCccccCCHHHHH
Q 016155 282 -----AVVTC---FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY-H--------FADLYGQEDEMSIELSLEDVK 342 (394)
Q Consensus 282 -----~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN--~GPLly-h--------~~~~~g~~~~~~ieLS~eEl~ 342 (394)
+|+.+ .||....+...+|+++++.|+|||+++- +.+-.- + |.. .+ .+ ....|.+||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~-~g-~p--~~~rs~~ei~ 233 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA-RN-MP--MRLRTHAEAE 233 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH-TT-CC--CCCCCHHHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh-cC-CC--CccCCHHHHH
Confidence 45544 3676665578999999999999999984 222100 0 111 12 22 3356999999
Q ss_pred HHHHhCCCEEEEE
Q 016155 343 RVALHYGFEFEKE 355 (394)
Q Consensus 343 ~ll~~~GF~ii~e 355 (394)
+++. ||++++.
T Consensus 234 ~~f~--GlelveP 244 (277)
T 3giw_A 234 EFFE--GLELVEP 244 (277)
T ss_dssp HTTT--TSEECTT
T ss_pred HHhC--CCcccCC
Confidence 9994 9998873
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=105.20 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+|++++ ..|+++|+|..|+..++--+.... . .+.
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~--~----------------------~~~--- 147 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--I----------------------GYS--- 147 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--G----------------------GGG---
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh--c----------------------ccC---
Confidence 45799999999999999999985 689999999999977663221000 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--Chh--hHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAH--NIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~--ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|+.+... ...++||+|++..+.. .+. ...++++.++++|||||+++.
T Consensus 148 --------~~rv~v~~~Da~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 207 (304)
T 2o07_A 148 --------SSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 207 (304)
T ss_dssp --------CTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEECcHHHHHh--hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence 1247889999877422 1257899999764321 111 124789999999999999985
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-09 Score=101.71 Aligned_cols=130 Identities=11% Similarity=0.009 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||++ +..|+|+|+|..|+..++-.+... .+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~--------------------------g~--- 168 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL--------------------------GV--- 168 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999999999986 368999999999997665332110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccCChh---------h-------HHHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FIDTAH---------N-------IVEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---f---FlDta~---------n-------i~~yl~~I~~~ 305 (394)
.++.++.+|+.++.. ..+.||+|+.. . .+...+ + ..++|+.++++
T Consensus 169 ----------~~v~~~~~D~~~~~~---~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~ 235 (315)
T 1ixk_A 169 ----------LNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 235 (315)
T ss_dssp ----------CSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CeEEEEECChhhccc---ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136788899887642 24689999863 1 122111 1 14789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|||||++|-..-- .+ -+=+.+.+..++++.||+++..
T Consensus 236 LkpGG~lv~stcs-~~------------~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 236 LKPGGILVYSTCS-LE------------PEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp EEEEEEEEEEESC-CC------------GGGTHHHHHHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCC-CC------------hHHhHHHHHHHHhcCCCEEecC
Confidence 9999999831100 00 0114456778888899988753
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=103.67 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+++++ | ..|+++|+|..|+..++--+..... .+.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~------------------------~~~--- 142 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC------------------------GFD--- 142 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG------------------------GGG---
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc------------------------ccC---
Confidence 3579999999999999999998 3 6899999999999776632210000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC---Chhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD---ta~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|+.+... ...++||+|+...+-. .... ..++++.++++|||||+++.
T Consensus 143 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 143 --------DPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp --------CTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCceEEEECcHHHHHh--hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1247889999877422 1247899999754321 1111 26899999999999999985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=103.54 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.+++++ | -.|+++|++..|+..++--+.... + ..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~---------------~---------~~---- 126 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA---------------G---------KL---- 126 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH---------------T---------TT----
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhc---------------c---------cc----
Confidence 4579999999999999999998 5 689999999999977763221000 0 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|+.+... ...++||+|+.-.+... +.. ..++++.++++|||||+++.
T Consensus 127 -------~~~rv~v~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 127 -------DDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp -------TSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCceEEEECcHHHHHh--hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01247889999887432 12478999997543211 111 25899999999999999985
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=104.54 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.++++. +..|+++|+|..|+..++..+... ++ .+.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~---------------~~---------~~~--- 168 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI---------------SC---------GYE--- 168 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT---------------SG---------GGG---
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh---------------cc---------ccC---
Confidence 4569999999999999999988 478999999999997766321100 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl--Dta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|+.+... ...++||+|++..+- .....+ .++++.++++|||||+++.
T Consensus 169 --------~~~v~~~~~D~~~~l~--~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 228 (321)
T 2pt6_A 169 --------DKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228 (321)
T ss_dssp --------STTEEEEESCHHHHHH--HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEEccHHHHHh--hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1247899999877421 124789999976532 122333 6899999999999999985
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=105.12 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||+|.++.+|++. +..|+++|+|..|+..|+-.+.... . .+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~---------------------~---~~---- 159 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS---------------------C---GF---- 159 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS---------------------G---GG----
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc---------------------c---cc----
Confidence 4569999999999999999988 4689999999999977663211000 0 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl--Dta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|+.+... ...++||+|++..+- ..+..+ .++++.++++|||||+++.
T Consensus 160 -------~~~rv~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~ 220 (314)
T 2b2c_A 160 -------SHPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220 (314)
T ss_dssp -------GCTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred -------CCCCEEEEEChHHHHHH--hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence 01247889999877421 124789999976542 112223 6899999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=101.79 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..+|+++- .|+|+|+|..|+..++..+.. + .
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~----n----------------------~----- 167 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL----N----------------------K----- 167 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH----T----------------------T-----
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-----
Confidence 567999999999999999999965 899999999999766632210 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
-.++.++.||+.++ . . .+.||+|+...- .+..++++.+.++|||||+++-
T Consensus 168 --------l~~~~~~~~d~~~~-~--~-~~~~D~Vi~d~p----~~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 168 --------LNNVIPILADNRDV-E--L-KDVADRVIMGYV----HKTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp --------CSSEEEEESCGGGC-C--C-TTCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred --------CCCEEEEECChHHc-C--c-cCCceEEEECCc----ccHHHHHHHHHHHcCCCCEEEE
Confidence 01367899999886 3 1 578999976533 2566789999999999999873
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-09 Score=101.42 Aligned_cols=97 Identities=8% Similarity=-0.022 Sum_probs=67.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeC----CHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEF----SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~----S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|.++..||++| .|+|+|+ |..|+. ... .+..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~-------~~~-----------------------~~~~-- 128 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-------PIP-----------------------MSTY-- 128 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-------CCC-----------------------CCST--
T ss_pred CCCEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHH-------HHH-----------------------hhhc--
Confidence 56799999999999999999995 8999999 554420 000 0000
Q ss_pred CCCCCCCCCCCCceeEEec-ccccccCCCCCCCCccEEEEecccCCh------hhHHHHHHHHHHhccCCcEEEE
Q 016155 247 PDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAWDAVVTCFFIDTA------HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~G-Df~ely~~~~~~~~fD~VvT~fFlDta------~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...++.+..+ |++++. .++||+|++.+-..+. ......|+.+.++|||||.||.
T Consensus 129 ---------~~~~v~~~~~~D~~~l~-----~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 129 ---------GWNLVRLQSGVDVFFIP-----PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp ---------TGGGEEEECSCCTTTSC-----CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ---------CCCCeEEEeccccccCC-----cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0124788888 887752 3689999986432211 1122578889999999999985
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=101.69 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHhhhhhccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTETA 219 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---------------Gf~v~G~D~S~~ML~~s~filn~~~~~ 219 (394)
++++.+.+.+.. ..+.+|||||||+|.+...+++. +..++|+|++..|+..|+.-+..
T Consensus 158 ~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l---- 230 (445)
T 2okc_A 158 PLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL---- 230 (445)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH----
Confidence 455555554432 25679999999999999888863 47899999999999777632210
Q ss_pred cccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-----
Q 016155 220 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----- 292 (394)
Q Consensus 220 ~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta----- 292 (394)
+.+. ..+..+..||++.... .+.||+|+++ |.....
T Consensus 231 ----------------------~g~~-----------~~~~~i~~gD~l~~~~----~~~fD~Iv~NPPf~~~~~~~~~~ 273 (445)
T 2okc_A 231 ----------------------HGIG-----------TDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSVDI 273 (445)
T ss_dssp ----------------------TTCC-----------SSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCCC
T ss_pred ----------------------hCCC-----------cCCCCEeeCCCCCCcc----cCCcCEEEECCCCCCcccccchh
Confidence 0000 0024678889876432 3589999987 322110
Q ss_pred ----------hhHHHHHHHHHHhccCCcEEEEecC
Q 016155 293 ----------HNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 293 ----------~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
..-..+++.+.++|||||+++-+-|
T Consensus 274 ~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 274 NRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1124789999999999999986555
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-08 Score=97.37 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-------CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 243 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-------f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~ 243 (394)
++.+|||||||+|.++..+++.. ..++|+|++..|+..|+..+... .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~--------------------------g 183 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------R 183 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------------------------T
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC--------------------------C
Confidence 46799999999999999998775 67999999999997776322100 0
Q ss_pred cccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChh--------------hH-HHHHHHHHHh
Q 016155 244 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAH--------------NI-VEYIEIISRI 305 (394)
Q Consensus 244 v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f-FlDta~--------------ni-~~yl~~I~~~ 305 (394)
+ ++.+..||+++.. ..+.||+|+++ | ++.... +. ..+++.+.+.
T Consensus 184 ~--------------~~~i~~~D~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 245 (344)
T 2f8l_A 184 Q--------------KMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 245 (344)
T ss_dssp C--------------CCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred C--------------CceEEECCCCCcc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH
Confidence 0 1467888876632 24789999987 3 332211 12 2579999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ 351 (394)
|||||+++-+-|--+ +. .-..+++++.+.+.|+.
T Consensus 246 Lk~gG~~~~v~p~~~-~~-----------~~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 246 TKPGGYLFFLVPDAM-FG-----------TSDFAKVDKFIKKNGHI 279 (344)
T ss_dssp EEEEEEEEEEEEGGG-GG-----------STTHHHHHHHHHHHEEE
T ss_pred hCCCCEEEEEECchh-cC-----------CchHHHHHHHHHhCCeE
Confidence 999999886544221 11 11358899988887763
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-09 Score=100.35 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+.+||++|||+|.++.++++.|-.|+++|++..|+..|+--+.. . ++ .+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~------------~---~~---------~~------ 121 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH------------F---HE---------VK------ 121 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT------------H---HH---------HH------
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh------------h---cc---------cc------
Confidence 456999999999999999998887899999999998544411100 0 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|..++. ++||+|+... .+...+++.++++|||||+++.
T Consensus 122 -----~~~rv~~~~~D~~~~~------~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 122 -----NNKNFTHAKQLLDLDI------KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp -----TCTTEEEESSGGGSCC------CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCeEEEEechHHHHH------hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEE
Confidence 0124788899987642 6799998752 2233599999999999999985
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=104.10 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+.. + .+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~----n----------------------g~------ 261 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALR----L----------------------GL------ 261 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H----------------------TC------
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHH----h----------------------CC------
Confidence 467999999999999999999999999999999999766632210 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC-------hhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT-------AHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt-------a~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. ..+..+|+.++... ..+.||+|+.. +|... ..+..++++.+.++|||||+++-
T Consensus 262 ------~--~~~~~~D~~~~l~~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~ 324 (393)
T 4dmg_A 262 ------R--VDIRHGEALPTLRG--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWL 324 (393)
T ss_dssp ------C--CEEEESCHHHHHHT--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ------C--CcEEEccHHHHHHH--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 13457888775321 12449999864 23322 23345778888999999999983
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=98.62 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+... .
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~--------------------------~------- 88 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYE--------------------------G------- 88 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999999999999999999997665322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHH---------------HHHHHhccCCc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYI---------------EIISRILKDGG 310 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~ni~~yl---------------~~I~~~LKpGG 310 (394)
..++.++.+|+.++. .++||+|++.. |--+.+.+...+ +.+.++|+|+|
T Consensus 89 ------~~~v~~~~~D~~~~~-----~~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 89 ------YNNLEVYEGDAIKTV-----FPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp ------CCCEEC----CCSSC-----CCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ------CCceEEEECchhhCC-----cccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 023678889988753 24799999763 222233345555 55778999988
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=100.72 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++..+.. +
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------------- 266 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------------- 266 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 456999999999999999999986 899999999999776632210 0
Q ss_pred CCCCCCC-CCceeEEecccccccCC-CCCCCCccEEEEe--ccc-------CChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGI-TEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~-~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fFl-------Dta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.. ..++.++.+|+.++... +...++||+|+.. +|. +......+++..+.++|||||+++-
T Consensus 267 -----gl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 267 -----KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp -----TCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred -----CCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 11478899998775320 0013689999875 221 2225677899999999999999873
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=94.10 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.++. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 18 ~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~ 69 (244)
T 1qam_A 18 NIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 69 (244)
T ss_dssp HHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 56666665542 25679999999999999999999999999999999996554
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-08 Score=92.28 Aligned_cols=152 Identities=15% Similarity=0.073 Sum_probs=96.4
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 145 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 145 g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
...||-.+|.++-..+-+. + .+.+|||+|||+|-|+..++ -+..++|.|+|..|+.+++..+...
T Consensus 85 STrerLp~ld~fY~~i~~~-~-----~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~-------- 149 (253)
T 3frh_A 85 STKERLAELDTLYDFIFSA-E-----TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREK-------- 149 (253)
T ss_dssp HHHHHGGGHHHHHHHHTSS-C-----CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHT--------
T ss_pred CHHHHhhhHHHHHHHHhcC-C-----CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhc--------
Confidence 3567777777777766655 2 46799999999999999988 7789999999999998777543210
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHH
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEI 301 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~ 301 (394)
+.++.+..+|+..... .+.||+|+.. -+|+...- .....
T Consensus 150 --------------------------------g~~~~~~v~D~~~~~~----~~~~DvvLllk~lh~LE~q~~--~~~~~ 191 (253)
T 3frh_A 150 --------------------------------DWDFTFALQDVLCAPP----AEAGDLALIFKLLPLLEREQA--GSAMA 191 (253)
T ss_dssp --------------------------------TCEEEEEECCTTTSCC----CCBCSEEEEESCHHHHHHHST--THHHH
T ss_pred --------------------------------CCCceEEEeecccCCC----CCCcchHHHHHHHHHhhhhch--hhHHH
Confidence 1126778888776432 4689999876 23433221 23447
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 302 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 302 I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+...|+++|++|++.-- ...|..+ .++=...+..+-.-...+.++.+.
T Consensus 192 ll~aL~~~~vvVsfPtk-----sl~Gr~~--gm~~~Y~~~~e~~~~~~~~~~~~~ 239 (253)
T 3frh_A 192 LLQSLNTPRMAVSFPTR-----SLGGRGK--GMEANYAAWFEGGLPAEFEIEDKK 239 (253)
T ss_dssp HHHHCBCSEEEEEEECC------------------CHHHHHHHHSCTTEEEEEEE
T ss_pred HHHHhcCCCEEEEcChH-----HhcCCCc--chhhHHHHHHHHHhhccchhhhhe
Confidence 77899999999996410 0011121 344445444443335566766654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=9.7e-09 Score=102.61 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++..+.. +
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~----n----------------------------- 263 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 263 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999987 899999999999766632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fFlDta-------~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|+.++... ....++||+|+.. +|.... .+..+++..+.++|||||+++-
T Consensus 264 -----~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 333 (396)
T 2as0_A 264 -----GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 333 (396)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0012478899998775310 0014689999874 333222 4456788999999999998874
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.6e-08 Score=98.27 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=74.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|.++..+|+.+..|+|+|+|..|+..++..+.. + .
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~----n----------------------~-------- 255 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------G-------- 255 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------T--------
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 45899999999999999999988899999999999766632210 0 0
Q ss_pred CCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCC-------hhhHHHHHHHHHHhccCCcEEEE
Q 016155 252 ASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDT-------AHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fFlDt-------a~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. .++.++.+|+.++... ....++||+|+.. +|... .....+++..+.++|||||+++-
T Consensus 256 ----~-~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 323 (382)
T 1wxx_A 256 ----L-GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 323 (382)
T ss_dssp ----C-TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ----C-CCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 1267899998775320 0014689999863 23221 14456788999999999999884
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=96.66 Aligned_cols=133 Identities=14% Similarity=-0.016 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||++ | ..|+|+|+|..|+..++..+... .
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~--------------------------g---- 132 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM--------------------------G---- 132 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT--------------------------T----
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh--------------------------C----
Confidence 5679999999999999999983 5 78999999999997655322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEec--c-cC---------------ChhhHHHHHHHHHHhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCF--F-ID---------------TAHNIVEYIEIISRILKD 308 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~f--F-lD---------------ta~ni~~yl~~I~~~LKp 308 (394)
. .++.++.+|+.++... ....+.||+|+..- . +- ......+.++.+.++|||
T Consensus 133 --------~-~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp 203 (274)
T 3ajd_A 133 --------V-LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK 203 (274)
T ss_dssp --------C-CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE
T ss_pred --------C-CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 1377888998775320 00146899998651 1 11 112346889999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEKE 355 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~-~GF~ii~e 355 (394)
||++|-...-+. -+=+.+.+..++++ -+|+++..
T Consensus 204 gG~lv~stcs~~-------------~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 204 DGELVYSTCSME-------------VEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp EEEEEEEESCCC-------------TTSSHHHHHHHHHHCSSEEEECC
T ss_pred CCEEEEEECCCC-------------hHHhHHHHHHHHHhCCCcEEecC
Confidence 999984211100 01235566666754 57877653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=107.61 Aligned_cols=140 Identities=12% Similarity=0.132 Sum_probs=93.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|.. |+|+|+|..||..++--+.. + .+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~----n----------------------gl~---- 588 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL----N----------------------GLT---- 588 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------TCC----
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 4679999999999999999999985 99999999999766522110 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc---------CChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI---------DTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFl---------Dta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
..++.++.+|+.++.. ...++||+|+.. +|. +...+..++++.+.++|||||+++-....
T Consensus 589 -------~~~v~~i~~D~~~~l~--~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 589 -------GRAHRLIQADCLAWLR--EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp -------STTEEEEESCHHHHHH--HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -------ccceEEEecCHHHHHH--hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1247899999988532 124789999864 232 22345667799999999999999831100
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE--EeeccccCCCCc
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK--EKTIETTYTTNP 366 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~--e~~i~~~Y~~d~ 366 (394)
..+.+. .+++.+.||+... ...++..+..++
T Consensus 660 -------------~~~~~~----~~~l~~~g~~~~~i~~~~lp~df~~~~ 692 (703)
T 3v97_A 660 -------------RGFRMD----LDGLAKLGLKAQEITQKTLSQDFARNR 692 (703)
T ss_dssp -------------TTCCCC----HHHHHHTTEEEEECTTTTCCGGGTTCS
T ss_pred -------------cccccC----HHHHHHcCCceeeeeeccCCCCCCCCC
Confidence 012333 3456778998544 234444444443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=96.43 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCCeEEEecC------CCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCc
Q 016155 171 SPPACLVPGA------GLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 241 (394)
Q Consensus 171 ~~~~VLvpGC------GlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ql 241 (394)
++.+|||+|| |+|. ..++++ +..|+|+|+|.. + .
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~--------------------------- 105 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------S--------------------------- 105 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------C---------------------------
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------C---------------------------
Confidence 5679999999 4466 333332 479999999974 0 0
Q ss_pred cccccCCCCCCCCCCCCceeE-EecccccccCCCCCCCCccEEEEeccc--------CC---hhhHHHHHHHHHHhccCC
Q 016155 242 RPVSIPDIHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFI--------DT---AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 242 r~v~iPDv~p~~~~~~~~ls~-~~GDf~ely~~~~~~~~fD~VvT~fFl--------Dt---a~ni~~yl~~I~~~LKpG 309 (394)
++.+ +.||+.++.. .++||+|++.... +. ..-+.+.++.++++||||
T Consensus 106 -----------------~v~~~i~gD~~~~~~----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 106 -----------------DADSTLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp -----------------SSSEEEESCGGGCCC----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred -----------------CCEEEEECccccCCc----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 1456 8899987532 3689999986431 21 222457899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|.++-.. + .. -..+++.+++++.||..++.
T Consensus 165 G~~v~~~---~--~~-----------~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 165 GSIAVKI---T--EH-----------SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp EEEEEEE---C--SS-----------SCCHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEE---e--cc-----------CCHHHHHHHHHHcCCcEEEE
Confidence 9998521 1 10 12358999999999986654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=98.18 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++.. |+.+..|+|+|+|..|+..++..+.. +
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~----n------------------------------ 239 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKL----N------------------------------ 239 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 467999999999999999 98777999999999999766532210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
....++.++.+|+.++. ++||+|+. |......++++.+.++|||||+++-.. +. +
T Consensus 240 ----~l~~~v~~~~~D~~~~~------~~fD~Vi~----dpP~~~~~~l~~~~~~L~~gG~l~~~~-----~~------~ 294 (336)
T 2yx1_A 240 ----KLEHKIIPILSDVREVD------VKGNRVIM----NLPKFAHKFIDKALDIVEEGGVIHYYT-----IG------K 294 (336)
T ss_dssp ----TCTTTEEEEESCGGGCC------CCEEEEEE----CCTTTGGGGHHHHHHHEEEEEEEEEEE-----EE------S
T ss_pred ----CCCCcEEEEECChHHhc------CCCcEEEE----CCcHhHHHHHHHHHHHcCCCCEEEEEE-----ee------c
Confidence 01124788999988752 68999986 333334488999999999999887311 11 0
Q ss_pred CccccCCHHHHHHHHHhC-CCEEEEEe
Q 016155 331 EMSIELSLEDVKRVALHY-GFEFEKEK 356 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~-GF~ii~e~ 356 (394)
. .+++.+++.+. ||+++...
T Consensus 295 ----~--~~~~~~~l~~~~~~~i~~~~ 315 (336)
T 2yx1_A 295 ----D--FDKAIKLFEKKCDCEVLEKR 315 (336)
T ss_dssp ----S--SHHHHHHHHHHSEEEEEEEE
T ss_pred ----C--chHHHHHHHHhcCCcEEEEE
Confidence 1 34555666665 78876543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.5e-09 Score=96.23 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=73.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+.+.++. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++ +.
T Consensus 17 ~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~-------~~---------------- 70 (245)
T 1yub_A 17 VLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSS-------EK---------------- 70 (245)
T ss_dssp THHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSS-------CT----------------
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHH-------HH----------------
Confidence 34444444432 25679999999999999999999999999999999963211 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHH----------H----
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEY----------I---- 299 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~y----------l---- 299 (394)
+ ....++.++.+|+.++.. + ..++| .||++ |++.+ .-+... +
T Consensus 71 --------~----------~~~~~v~~~~~D~~~~~~-~-~~~~f-~vv~n~Py~~~~-~~~~~~~~~~~~~~~~lm~q~ 128 (245)
T 1yub_A 71 --------L----------KLNTRVTLIHQDILQFQF-P-NKQRY-KIVGNIPYHLST-QIIKKVVFESRASDIYLIVEE 128 (245)
T ss_dssp --------T----------TTCSEEEECCSCCTTTTC-C-CSSEE-EEEEECCSSSCH-HHHHHHHHHCCCEEEEEEEES
T ss_pred --------h----------ccCCceEEEECChhhcCc-c-cCCCc-EEEEeCCccccH-HHHHHHHhCCCCCeEEEEeeH
Confidence 0 001247889999988632 1 13578 55554 44432 223233 3
Q ss_pred HHHHHhccCCcEEEE
Q 016155 300 EIISRILKDGGVWIN 314 (394)
Q Consensus 300 ~~I~~~LKpGG~wIN 314 (394)
+.+.++|||||.+.-
T Consensus 129 e~a~rll~~~G~l~v 143 (245)
T 1yub_A 129 GFYKRTLDIHRTLGL 143 (245)
T ss_dssp SHHHHHHCGGGSHHH
T ss_pred HHHHHHhCCCCchhh
Confidence 679999999998763
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-07 Score=94.44 Aligned_cols=131 Identities=14% Similarity=0.059 Sum_probs=86.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||.|..+..||.+ | ..|+|+|+|..|+..++..+... .
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~--------------------------g---- 308 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM--------------------------G---- 308 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------T----
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999985 3 68999999999997655322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e--c-ccCCh---------hhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C--F-FIDTA---------HNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~--f-FlDta---------~ni-------~~yl~~I~~~ 305 (394)
-.++.++.+|+.++.. ....+.||+|+. | + .+... .++ .+.++.+.++
T Consensus 309 ---------~~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 378 (450)
T 2yxl_A 309 ---------IKIVKPLVKDARKAPE-IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL 378 (450)
T ss_dssp ---------CCSEEEECSCTTCCSS-SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT
T ss_pred ---------CCcEEEEEcChhhcch-hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0136778888877531 122368999985 2 1 22211 222 5789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhC-CCEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFEK 354 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~-GF~ii~ 354 (394)
|||||++|-...-+. -+=+.+.+..++++. ||+++.
T Consensus 379 LkpGG~lvy~tcs~~-------------~~ene~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 379 VKPGGRLLYTTCSIF-------------KEENEKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp EEEEEEEEEEESCCC-------------GGGTHHHHHHHHHHCSSCEECC
T ss_pred cCCCcEEEEEeCCCC-------------hhhHHHHHHHHHHhCCCCEEee
Confidence 999999983211100 011455677777765 788765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=95.40 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC----------------------------------------Ce
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG----------------------------------------FI 195 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G----------------------------------------f~ 195 (394)
+...|.....- .++.+|||||||+|.++.++|..| ..
T Consensus 183 lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 183 LAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 44444444332 256789999999999999999886 46
Q ss_pred EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCC
Q 016155 196 SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS 275 (394)
Q Consensus 196 v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~ 275 (394)
|+|+|+|..|+..|+..+... ...+.+.+..+|+.++..
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~--------------------------------------gl~~~i~~~~~D~~~l~~--- 298 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIA--------------------------------------GVDEYIEFNVGDATQFKS--- 298 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHH--------------------------------------TCGGGEEEEECCGGGCCC---
T ss_pred EEEEECCHHHHHHHHHHHHHc--------------------------------------CCCCceEEEECChhhcCc---
Confidence 999999999998877432211 011247899999998643
Q ss_pred CCCCccEEEEe--cc--cCChhhHHHHHHHHHHhccC--CcEEE
Q 016155 276 QVGAWDAVVTC--FF--IDTAHNIVEYIEIISRILKD--GGVWI 313 (394)
Q Consensus 276 ~~~~fD~VvT~--fF--lDta~ni~~yl~~I~~~LKp--GG~wI 313 (394)
.++||+||+. |. +....++.+..+.+.+.||+ ||...
T Consensus 299 -~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 299 -EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp -SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred -CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 3689999986 43 33345677788888888887 55443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=94.46 Aligned_cols=101 Identities=10% Similarity=0.112 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~----------------------------------------v~G~D~S~~ML~~s~ 210 (394)
++..||||+||+|.++.|.|..+.. |+|+|+|..|+..|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 4568999999999999999987643 999999999998777
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 288 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF 288 (394)
.-+... ...+.+.+..+|+.++.. .++||+||+. |.
T Consensus 281 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPYg 318 (393)
T 3k0b_A 281 QNAVEA--------------------------------------GLGDLITFRQLQVADFQT----EDEYGVVVANPPYG 318 (393)
T ss_dssp HHHHHT--------------------------------------TCTTCSEEEECCGGGCCC----CCCSCEEEECCCCC
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHhCCC----CCCCCEEEECCCCc
Confidence 332110 011237889999998643 3589999998 54
Q ss_pred c--CChhhHHHHHHHHHHhccC--CcEEE
Q 016155 289 I--DTAHNIVEYIEIISRILKD--GGVWI 313 (394)
Q Consensus 289 l--Dta~ni~~yl~~I~~~LKp--GG~wI 313 (394)
. .....+.+..+.+.+.||+ ||...
T Consensus 319 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 319 ERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred cccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 3 2335566777778888877 65544
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-07 Score=91.39 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~----------------------------------------v~G~D~S~~ML~~s~ 210 (394)
++..||||+||+|.++.|.|..+.. |+|+|+|..|+..|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 4568999999999999999987643 999999999998777
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 288 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF 288 (394)
..+..+ ...+.+.+..+|+.++.. .+.||+||+. |-
T Consensus 274 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG 311 (384)
T 3ldg_A 274 KNAREV--------------------------------------GLEDVVKLKQMRLQDFKT----NKINGVLISNPPYG 311 (384)
T ss_dssp HHHHHT--------------------------------------TCTTTEEEEECCGGGCCC----CCCSCEEEECCCCT
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHHCCc----cCCcCEEEECCchh
Confidence 332110 111237899999998643 3589999998 54
Q ss_pred --cCChhhHHHHHHHHHHhccC--CcEEE
Q 016155 289 --IDTAHNIVEYIEIISRILKD--GGVWI 313 (394)
Q Consensus 289 --lDta~ni~~yl~~I~~~LKp--GG~wI 313 (394)
+....++.+..+.+.+.||+ ||...
T Consensus 312 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 312 ERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 55556788888888888887 66554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=91.10 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=102.1
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhcccccccc
Q 016155 145 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEW 222 (394)
Q Consensus 145 g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~ 222 (394)
...||-.+|.++...+-..++ ...+|||+|||+|=|+..++.. ...+.|+|++..|+.+++-.+...
T Consensus 111 STreRLp~lD~fY~~i~~~i~-----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------ 179 (281)
T 3lcv_B 111 STRERLPHLDEFYRELFRHLP-----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------ 179 (281)
T ss_dssp HHHHHGGGHHHHHHHHGGGSC-----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------
T ss_pred CHHHHhHhHHHHHHHHHhccC-----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 457888888888777777764 4569999999999999999887 358999999999998777444210
Q ss_pred ccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH-HHHHH
Q 016155 223 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV-EYIEI 301 (394)
Q Consensus 223 ~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~-~yl~~ 301 (394)
+-+.++..+|+..-. ..+.||+|+..--|...++-. ...-.
T Consensus 180 ----------------------------------g~~~~~~v~D~~~~~----p~~~~DvaL~lkti~~Le~q~kg~g~~ 221 (281)
T 3lcv_B 180 ----------------------------------NVPHRTNVADLLEDR----LDEPADVTLLLKTLPCLETQQRGSGWE 221 (281)
T ss_dssp ----------------------------------TCCEEEEECCTTTSC----CCSCCSEEEETTCHHHHHHHSTTHHHH
T ss_pred ----------------------------------CCCceEEEeeecccC----CCCCcchHHHHHHHHHhhhhhhHHHHH
Confidence 012567778876532 258899998754333322211 12338
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCccc-cCCHHHHHHHHHhCCCEEEEEe
Q 016155 302 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSI-ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 302 I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~i-eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+...|+|||++||+.- ....|..+ .+ +.=.+.+++.+...|+.+.+..
T Consensus 222 ll~aL~~~~vvVSfp~-----ksl~Grs~--gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 222 VIDIVNSPNIVVTFPT-----KSLGQRSK--GMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSSCSEEEEEEEC-----C---------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHhCCCCEEEeccc-----hhhcCCCc--chhhHHHHHHHHHHHhcCCceeeee
Confidence 9999999999999632 00011112 22 2233556666777888665543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=94.00 Aligned_cols=131 Identities=16% Similarity=0.061 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||.+ +-.|+|+|+|..|+..++-.+... .+
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~--------------------------g~--- 155 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW--------------------------GV--- 155 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5779999999999999999986 358999999999997655322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec------ccCChhhH----------------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF------FIDTAHNI----------------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f------FlDta~ni----------------~~yl~~I~~~ 305 (394)
.++.++.+|+.++.. ...+.||+|+.-- .+...+++ .+.|+.+.++
T Consensus 156 ----------~nv~v~~~Da~~l~~--~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 223 (456)
T 3m4x_A 156 ----------SNAIVTNHAPAELVP--HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKM 223 (456)
T ss_dssp ----------SSEEEECCCHHHHHH--HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CceEEEeCCHHHhhh--hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778888877531 1147899998621 11111111 2679999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|||||++|-.. ..+ ..+=+.+.+..++++.||+++..
T Consensus 224 LkpGG~LvYsT-Cs~------------~~eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 224 LKNKGQLIYST-CTF------------APEENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp EEEEEEEEEEE-SCC------------CGGGTHHHHHHHHHHSSEEEECC
T ss_pred cCCCcEEEEEE-eec------------ccccCHHHHHHHHHhCCCEEEec
Confidence 99999998210 000 01225677888888999887763
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=88.56 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+.+..... ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+..
T Consensus 38 i~~~Iv~~l~~~---~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------------------- 94 (295)
T 3gru_A 38 FVNKAVESANLT---KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------------------- 94 (295)
T ss_dssp HHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------------
T ss_pred HHHHHHHhcCCC---CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------------
Confidence 444444444322 567999999999999999999999999999999999765522210
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f 287 (394)
..++.++.||+.++.. ....||+|+.+.
T Consensus 95 ---------------------~~~v~vi~gD~l~~~~---~~~~fD~Iv~Nl 122 (295)
T 3gru_A 95 ---------------------YNNIEIIWGDALKVDL---NKLDFNKVVANL 122 (295)
T ss_dssp ---------------------CSSEEEEESCTTTSCG---GGSCCSEEEEEC
T ss_pred ---------------------CCCeEEEECchhhCCc---ccCCccEEEEeC
Confidence 0237889999988632 245799999773
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-07 Score=90.94 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||+.|..|+|+|+|..|+..|+..+.. +
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~----n------------------------------ 335 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI----N------------------------------ 335 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H------------------------------
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 456999999999999999999999999999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh-hH-HHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NI-VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~-ni-~~yl~~I~~~LKpGG~wIN 314 (394)
.. . +.+..+|+.++.. .+||+|+.. ... .. ...++.+. .|||||+++-
T Consensus 336 ----gl-~-v~~~~~d~~~~~~-----~~fD~Vv~d----PPr~g~~~~~~~~l~-~l~p~givyv 385 (425)
T 2jjq_A 336 ----NV-D-AEFEVASDREVSV-----KGFDTVIVD----PPRAGLHPRLVKRLN-REKPGVIVYV 385 (425)
T ss_dssp ----TC-C-EEEEECCTTTCCC-----TTCSEEEEC----CCTTCSCHHHHHHHH-HHCCSEEEEE
T ss_pred ----CC-c-EEEEECChHHcCc-----cCCCEEEEc----CCccchHHHHHHHHH-hcCCCcEEEE
Confidence 00 1 5789999888632 289999873 221 11 13555554 4999998873
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=96.08 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=72.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||.+ +-.|+|+|+|..|+..++-.+... .
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~--------------------------g---- 166 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC--------------------------G---- 166 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------T----
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999986 368999999999997665322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccC---------Chhh-------HHHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FID---------TAHN-------IVEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f---FlD---------ta~n-------i~~yl~~I~~~ 305 (394)
-.++.++.+|+.++.. ...+.||+|+. |. .+. +..+ ..+.|+.+.++
T Consensus 167 ---------~~nv~~~~~D~~~~~~--~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 235 (479)
T 2frx_A 167 ---------ISNVALTHFDGRVFGA--AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHA 235 (479)
T ss_dssp ---------CCSEEEECCCSTTHHH--HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcEEEEeCCHHHhhh--hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHh
Confidence 0136778889877532 02468999987 31 111 1111 23678999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 236 LkpGG~Lv 243 (479)
T 2frx_A 236 LRPGGTLV 243 (479)
T ss_dssp EEEEEEEE
T ss_pred cCCCCEEE
Confidence 99999998
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-07 Score=92.60 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|..+..||.++ ..|+|+|+|..|+..++-.+...
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~-------------------------------- 293 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL-------------------------------- 293 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------------------------------
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999986 58999999999986555322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccCC---------hhhH-------HHHHHHHHHhc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDT---------AHNI-------VEYIEIISRIL 306 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f---FlDt---------a~ni-------~~yl~~I~~~L 306 (394)
+.++.++.+|+.++... ...+.||+|+. |. .+.. ..++ .+.++.+.++|
T Consensus 294 --------g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L 364 (429)
T 1sqg_A 294 --------GMKATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364 (429)
T ss_dssp --------TCCCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred --------CCCeEEEeCchhhchhh-cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00146678888765210 12368999986 21 1221 1222 47799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 354 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~-~GF~ii~ 354 (394)
||||++|-...-+. -+=+.+.+..++++ -+|+++.
T Consensus 365 kpGG~lvystcs~~-------------~~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 365 KTGGTLVYATCSVL-------------PEENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp EEEEEEEEEESCCC-------------GGGTHHHHHHHHHHCTTCEECS
T ss_pred CCCCEEEEEECCCC-------------hhhHHHHHHHHHHhCCCCEEeC
Confidence 99999984211110 01134567777765 4787764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.7e-07 Score=90.28 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 332 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL----N----------------------G------- 332 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhh-HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~n-i~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g 327 (394)
-.++.|+.+|+.+... .+...++||+|+.. .... ..+.++.+.+ ++|++++.- ..|-
T Consensus 333 ------~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d----PPr~g~~~~~~~l~~-~~p~~ivyvsc~p~--------- 392 (433)
T 1uwv_A 333 ------LQNVTFYHENLEEDVTKQPWAKNGFDKVLLD----PARAGAAGVMQQIIK-LEPIRIVYVSCNPA--------- 392 (433)
T ss_dssp ------CCSEEEEECCTTSCCSSSGGGTTCCSEEEEC----CCTTCCHHHHHHHHH-HCCSEEEEEESCHH---------
T ss_pred ------CCceEEEECCHHHHhhhhhhhcCCCCEEEEC----CCCccHHHHHHHHHh-cCCCeEEEEECChH---------
Confidence 0147889999887422 11234689999863 2211 2244555543 788876642 2221
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.| ..++ .++.+.||++.+..
T Consensus 393 -------tl-ard~-~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 393 -------TL-ARDS-EALLKAGYTIARLA 412 (433)
T ss_dssp -------HH-HHHH-HHHHHTTCEEEEEE
T ss_pred -------HH-HhhH-HHHHHCCcEEEEEE
Confidence 11 1234 34556799998854
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=91.15 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--------------------CCeEEEEeCCHHHHHHHhhhhh
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--------------------GFISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--------------------Gf~v~G~D~S~~ML~~s~filn 214 (394)
+|+..+.+.+.. ..+.+|||||||+|.+...+++. ...++|+|++..|+..|+..+-
T Consensus 156 ~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 156 PLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 344555444432 25679999999999998877653 2479999999999977764321
Q ss_pred ccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC--
Q 016155 215 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-- 290 (394)
Q Consensus 215 ~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD-- 290 (394)
. |...+. |+ ....+..||++.... ...+.||+|+++ |-..
T Consensus 233 l-------------~gi~~~------------~~---------~~~~I~~gDtL~~~~--~~~~~fD~Vv~NPPf~~~~~ 276 (541)
T 2ar0_A 233 L-------------HDIEGN------------LD---------HGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAAG 276 (541)
T ss_dssp T-------------TTCCCB------------GG---------GTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCSS
T ss_pred H-------------hCCCcc------------cc---------ccCCeEeCCCccccc--ccccCCeEEEECCCcccccc
Confidence 0 000000 00 114678888765421 124689999987 3211
Q ss_pred ----------ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhC
Q 016155 291 ----------TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY 348 (394)
Q Consensus 291 ----------ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~ 348 (394)
+...-..++..+.+.|||||+++-+-|--+-|.. -..+.|++.|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~-----------~~~~~iR~~L~~~ 333 (541)
T 2ar0_A 277 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-----------GKGTDIRRDLMDK 333 (541)
T ss_dssp CCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCC-----------THHHHHHHHHHHH
T ss_pred hhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecC-----------cHHHHHHHHHhhc
Confidence 1111347899999999999999866553221211 0246787766654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=84.43 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.|-+..... ++ +|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+
T Consensus 35 i~~~Iv~~~~~~---~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~---------------------- 88 (271)
T 3fut_A 35 HLRRIVEAARPF---TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETL---------------------- 88 (271)
T ss_dssp HHHHHHHHHCCC---CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHT----------------------
T ss_pred HHHHHHHhcCCC---CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------------------
Confidence 555555544322 45 9999999999999999999999999999999996554111
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHH
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEI 301 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~ 301 (394)
+ ..++.++.||+.++... ....+|.||++ |+|.+. -+.++++.
T Consensus 89 -----------~---------~~~v~vi~~D~l~~~~~--~~~~~~~iv~NlPy~iss~-il~~ll~~ 133 (271)
T 3fut_A 89 -----------S---------GLPVRLVFQDALLYPWE--EVPQGSLLVANLPYHIATP-LVTRLLKT 133 (271)
T ss_dssp -----------T---------TSSEEEEESCGGGSCGG--GSCTTEEEEEEECSSCCHH-HHHHHHHH
T ss_pred -----------C---------CCCEEEEECChhhCChh--hccCccEEEecCcccccHH-HHHHHhcC
Confidence 0 02478999999886421 11368999887 456443 35555554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-07 Score=95.53 Aligned_cols=130 Identities=13% Similarity=0.022 Sum_probs=85.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... .
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~--------------------------G---- 150 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW--------------------------G---- 150 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------C----
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5779999999999999999976 248999999999997665322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---cc---------CChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f---Fl---------Dta~ni-------~~yl~~I~~~ 305 (394)
. . +.++.+|+.++.. ...++||+|+. |. .+ .+..++ .+.|+.+.++
T Consensus 151 --------~-~-v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 218 (464)
T 3m6w_A 151 --------A-P-LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL 218 (464)
T ss_dssp --------C-C-CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTT
T ss_pred --------C-e-EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1 4677888877531 12478999985 21 11 111222 5789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhC-CCEEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~-GF~ii~e 355 (394)
|||||++|-.. ..+ ..+=+.+.+..++++. +|+++..
T Consensus 219 LkpGG~LvysT-Cs~------------~~eEne~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 219 LGPGGVLVYST-CTF------------APEENEGVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp EEEEEEEEEEE-SCC------------CGGGTHHHHHHHHHHCTTEEEECC
T ss_pred cCCCcEEEEEe-ccC------------chhcCHHHHHHHHHHCCCcEEEec
Confidence 99999998210 000 0122566677778776 6887753
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.4e-06 Score=81.58 Aligned_cols=65 Identities=28% Similarity=0.401 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhccCCcEEEE--ec-----Cc-------ch-h-----hhhc--cCC--------CCCccccCCHHHHHH
Q 016155 294 NIVEYIEIISRILKDGGVWIN--LG-----PL-------LY-H-----FADL--YGQ--------EDEMSIELSLEDVKR 343 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wIN--~G-----PL-------ly-h-----~~~~--~g~--------~~~~~ieLS~eEl~~ 343 (394)
|...+|+.+++.|||||++|- .| |. .| . +.+. .|. -....+..|.+|++.
T Consensus 203 D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~ 282 (374)
T 3b5i_A 203 DLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKE 282 (374)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHH
Confidence 455679999999999999983 22 11 11 1 1110 010 011245679999999
Q ss_pred HHH-hCCCEEEEEeec
Q 016155 344 VAL-HYGFEFEKEKTI 358 (394)
Q Consensus 344 ll~-~~GF~ii~e~~i 358 (394)
+++ ..||++.+.+..
T Consensus 283 ~l~~~~~F~I~~le~~ 298 (374)
T 3b5i_A 283 VVDANGSFAIDKLVVY 298 (374)
T ss_dssp HHHHHCSEEEEEEEEE
T ss_pred HHHhcCCcEEEEEEEE
Confidence 998 599999986543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=83.47 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.|.+.+... ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 17 i~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~ 68 (255)
T 3tqs_A 17 VLQKIVSAIHPQ---KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQ 68 (255)
T ss_dssp HHHHHHHHHCCC---TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhcCCC---CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 444444444322 5679999999999999999999999999999999997654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.5e-07 Score=88.35 Aligned_cols=137 Identities=9% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+++.+.+.... .+.+|||+|||+|.++..||+.+..|+|+|+|..|+..++..+.. +
T Consensus 201 ~l~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~----n-------------- 258 (369)
T 3bt7_A 201 QMLEWALDVTKG----SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA----N-------------- 258 (369)
T ss_dssp HHHHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 355555555432 246899999999999999999888999999999999776632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCC------------CCCccEEEEecccCChhhHHHHHHH
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQ------------VGAWDAVVTCFFIDTAHNIVEYIEI 301 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~------------~~~fD~VvT~fFlDta~ni~~yl~~ 301 (394)
. . .++.++.||+.++.. .+.. .+.||+|+. |.+.. .+.+.
T Consensus 259 --------g------------~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~----dPPr~--g~~~~ 311 (369)
T 3bt7_A 259 --------H------------I-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV----DPPRS--GLDSE 311 (369)
T ss_dssp --------T------------C-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE----CCCTT--CCCHH
T ss_pred --------C------------C-CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE----CcCcc--ccHHH
Confidence 0 0 136788888776421 0000 137999964 54321 23456
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 302 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 302 I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
+.+.|+|||.+|-+. . .+ ..-..++..+. + ||++.+...
T Consensus 312 ~~~~l~~~g~ivyvs---c--------~p----~t~ard~~~l~-~-~y~~~~~~~ 350 (369)
T 3bt7_A 312 TEKMVQAYPRILYIS---C--------NP----ETLCKNLETLS-Q-THKVERLAL 350 (369)
T ss_dssp HHHHHTTSSEEEEEE---S--------CH----HHHHHHHHHHH-H-HEEEEEEEE
T ss_pred HHHHHhCCCEEEEEE---C--------CH----HHHHHHHHHHh-h-CcEEEEEEe
Confidence 777888999887321 0 00 01234565554 3 798887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.1e-07 Score=88.77 Aligned_cols=111 Identities=12% Similarity=-0.023 Sum_probs=72.9
Q ss_pred CCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|.++..+|++ | ..|++||++..++..++.-+..... .+..|+-
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~------------------------~~~~~~~ 103 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD------------------------GELRESK 103 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC------------------------SCCEECS
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcc------------------------ccccccc
Confidence 568999999999999999998 4 5899999999999776633221100 0000000
Q ss_pred CCC-CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~-~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
... .... .++.++.+|+.++.. ...+.||+|+ +|..-...++++...++|||||+++
T Consensus 104 ~~~~~~gl-~~i~v~~~Da~~~~~--~~~~~fD~I~----lDP~~~~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 104 GRAILKGE-KTIVINHDDANRLMA--ERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp SEEEEESS-SEEEEEESCHHHHHH--HSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred ccccccCC-CceEEEcCcHHHHHH--hccCCCCEEE----eCCCCCHHHHHHHHHHhcCCCCEEE
Confidence 000 0000 127889999877532 1135799998 4443334588999999999999775
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-07 Score=95.81 Aligned_cols=118 Identities=21% Similarity=0.165 Sum_probs=79.5
Q ss_pred chHH-HHHHHHhhCCCCCC-CCCCeEEEecCCCChhHH---HHHHcC-C--eEEEEeCCHHHHHHHhhhhhccccccccc
Q 016155 152 CYKP-ILEELDALFPNRSK-ESPPACLVPGAGLGRLAL---EISHLG-F--ISQGNEFSYYMMICSSFILNHTETAGEWN 223 (394)
Q Consensus 152 ~y~p-Il~~L~~~~p~~~~-~~~~~VLvpGCGlGRLa~---eLA~~G-f--~v~G~D~S~~ML~~s~filn~~~~~~~~~ 223 (394)
.|.. |...|....+.... .+...|||+|||+|-|+. ..++++ - +|.|+|-|. |...+..+.+. +
T Consensus 336 ~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~----N--- 407 (637)
T 4gqb_A 336 QYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF----E--- 407 (637)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH----H---
T ss_pred HHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh----c---
Confidence 3443 44556665543221 234579999999999944 444433 2 589999997 55555544321 1
Q ss_pred cccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHH
Q 016155 224 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIE 300 (394)
Q Consensus 224 i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~ 300 (394)
...+.+.++.||++++-. .++.|+||+= +|++-.. +.+.+.
T Consensus 408 -------------------------------~~~dkVtVI~gd~eev~L----PEKVDIIVSEwMG~fLl~E~-mlevL~ 451 (637)
T 4gqb_A 408 -------------------------------EWGSQVTVVSSDMREWVA----PEKADIIVSELLGSFADNEL-SPECLD 451 (637)
T ss_dssp -------------------------------TTGGGEEEEESCTTTCCC----SSCEEEEECCCCBTTBGGGC-HHHHHH
T ss_pred -------------------------------cCCCeEEEEeCcceeccC----CcccCEEEEEcCcccccccC-CHHHHH
Confidence 112348899999999864 3789999987 4666543 558888
Q ss_pred HHHHhccCCcEEE
Q 016155 301 IISRILKDGGVWI 313 (394)
Q Consensus 301 ~I~~~LKpGG~wI 313 (394)
...|.|||||+.|
T Consensus 452 Ardr~LKPgGimi 464 (637)
T 4gqb_A 452 GAQHFLKDDGVSI 464 (637)
T ss_dssp HHGGGEEEEEEEE
T ss_pred HHHHhcCCCcEEc
Confidence 8899999999998
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.31 E-value=7e-06 Score=86.13 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=79.1
Q ss_pred CeEEEecCCCChhHHHHHHc-----------------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 173 PACLVPGAGLGRLALEISHL-----------------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~-----------------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
.+||||+||+|.+...+++. ...+.|+|++..|+..|+.-+-. |
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-------------~------ 306 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-------------R------ 306 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-------------T------
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-------------h------
Confidence 49999999999998776532 45799999999999777632210 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-----------------------
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID----------------------- 290 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD----------------------- 290 (394)
.+. .++.+..||.+.... .....||+||++ |-..
T Consensus 307 -------gi~------------~~i~i~~gDtL~~~~--~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~ 365 (544)
T 3khk_A 307 -------GID------------FNFGKKNADSFLDDQ--HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRI 365 (544)
T ss_dssp -------TCC------------CBCCSSSCCTTTSCS--CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEE
T ss_pred -------CCC------------cccceeccchhcCcc--cccccccEEEECCCcCCccccchhhhhhhhhhcCccccccc
Confidence 000 012224566544211 234678888876 3221
Q ss_pred ---Chh-hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 291 ---TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 291 ---ta~-ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
... .-..++..+.+.|||||+.+-+-|--+-+.. .-....|++.|.+.+.
T Consensus 366 ~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~----------~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 366 LTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN----------TNNEGEIRKTLVEQDL 419 (544)
T ss_dssp CCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC----------GGGHHHHHHHHHHTTC
T ss_pred ccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC----------cchHHHHHHHHHhCCc
Confidence 111 1236899999999999998876553222211 1256788888877654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.9e-06 Score=90.48 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--------------------------------------------f~v~G~D~S~~ML 206 (394)
++..||||+||+|.++.+.|..+ ..++|+|++..|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45689999999999999998764 4799999999999
Q ss_pred HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 016155 207 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 286 (394)
Q Consensus 207 ~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~ 286 (394)
..|+.-+..+ ...+.+.+.++|+.++.. |...+.||+||++
T Consensus 270 ~~A~~N~~~a--------------------------------------gv~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~N 310 (703)
T 3v97_A 270 QRARTNARLA--------------------------------------GIGELITFEVKDVAQLTN-PLPKGPYGTVLSN 310 (703)
T ss_dssp HHHHHHHHHT--------------------------------------TCGGGEEEEECCGGGCCC-SCTTCCCCEEEEC
T ss_pred HHHHHHHHHc--------------------------------------CCCCceEEEECChhhCcc-ccccCCCCEEEeC
Confidence 8877332211 111237899999998643 2223489999998
Q ss_pred --cc--cCChhhHHHHHHHHHHh---ccCCcEEEE
Q 016155 287 --FF--IDTAHNIVEYIEIISRI---LKDGGVWIN 314 (394)
Q Consensus 287 --fF--lDta~ni~~yl~~I~~~---LKpGG~wIN 314 (394)
|- +....++.+..+.+.+. ++|||...-
T Consensus 311 PPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 311 PPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 53 44445565555555544 557987763
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=82.45 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
.+.+||||+||+|.+...+++. ...+.|+|++..|+..|+.-+- . +.+.
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~--l------------------------~gi~ 274 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI--L------------------------HGVP 274 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH--H------------------------TTCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH--H------------------------cCCC
Confidence 5679999999999998888776 5689999999999877663210 0 0000
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC--------------------Chhh-HHHHHHHH
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--------------------TAHN-IVEYIEII 302 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD--------------------ta~n-i~~yl~~I 302 (394)
..++.+..||++...-+......||+||++ |-.. ...+ -..++..+
T Consensus 275 -----------~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~ 343 (542)
T 3lkd_A 275 -----------IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHG 343 (542)
T ss_dssp -----------GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHH
T ss_pred -----------cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHH
Confidence 013567888877641011235789999987 3211 0011 12589999
Q ss_pred HHhcc-CCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 303 SRILK-DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 303 ~~~LK-pGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
.+.|| |||+..-+-|--+-|.. -....|++.+.+.+.
T Consensus 344 l~~Lk~~gGr~a~VlP~g~Lf~~-----------~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 344 YYHLKQDNGVMAIVLPHGVLFRG-----------NAEGTIRKALLEEGA 381 (542)
T ss_dssp HHTBCTTTCEEEEEEETHHHHCC-----------THHHHHHHHHHHTTC
T ss_pred HHHhCCCceeEEEEecchHhhCC-----------chhHHHHHHHHhCCc
Confidence 99999 99999766554332221 125678888777654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.5e-06 Score=89.98 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=75.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH--HH--cC-----------CeEEEEeCCHHHHHHHhhhhhcccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEI--SH--LG-----------FISQGNEFSYYMMICSSFILNHTETAG 220 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eL--A~--~G-----------f~v~G~D~S~~ML~~s~filn~~~~~~ 220 (394)
|...++..++.. .+...|||+|||+|-|+... |. .| ..|+|+|-|.......+.+.. +
T Consensus 396 I~~al~d~~~~~--~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-----N 468 (745)
T 3ua3_A 396 VVGALKDLGADG--RKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-----R 468 (745)
T ss_dssp HHHHHHHHHTTC--CSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-----H
T ss_pred HHHHHHHhhccc--CCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-----c
Confidence 334455544321 13567999999999996432 22 23 389999999855543332210 1
Q ss_pred ccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CCCCCCccEEEEe---cccCChhhH
Q 016155 221 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC---FFIDTAHNI 295 (394)
Q Consensus 221 ~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~~~~~~fD~VvT~---fFlDta~ni 295 (394)
. ..+.+.++.||++++..+ ....++.|+||+- +|++.. -.
T Consensus 469 g----------------------------------~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nE-L~ 513 (745)
T 3ua3_A 469 T----------------------------------WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNE-LS 513 (745)
T ss_dssp T----------------------------------TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGG-SH
T ss_pred C----------------------------------CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchh-cc
Confidence 1 123378899999997531 0013789999987 477654 24
Q ss_pred HHHHHHHHHhccCCcEEE
Q 016155 296 VEYIEIISRILKDGGVWI 313 (394)
Q Consensus 296 ~~yl~~I~~~LKpGG~wI 313 (394)
.+.|..+.+.|||||+.|
T Consensus 514 pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 514 PECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHTTGGGSCTTCEEE
T ss_pred HHHHHHHHHhCCCCcEEE
Confidence 567888889999999998
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.3e-06 Score=77.69 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.+.. .++.+|||+|||+|.++. |++ |.. |+|+|+|..|+..++
T Consensus 9 i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~ 60 (252)
T 1qyr_A 9 VIDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQ 60 (252)
T ss_dssp HHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHH
Confidence 44444444332 256789999999999999 764 677 999999999996554
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=83.52 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH-------HHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSY-------YMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~-------~ML~~s~ 210 (394)
++.+|||+|||+|+++..||.+|..|+|+|+|. .|+..++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~ 129 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRAL 129 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHH
Confidence 456899999999999999999999999999999 6665443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=76.16 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=41.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICS 209 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s 209 (394)
+++.|.+.++.. ++.+|||+|||+|.++..|+++| ..|+|+|+|..|+..+
T Consensus 19 i~~~iv~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~ 70 (249)
T 3ftd_A 19 VLKKIAEELNIE---EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENL 70 (249)
T ss_dssp HHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHH
T ss_pred HHHHHHHhcCCC---CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 566666655432 56799999999999999999996 8999999999998644
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=78.79 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|-|.|..+.++.+. + -.|+.+|+...++.+++.-+-. ... + .
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~------------~~~--~--~------------ 134 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN------------HNA--G--S------------ 134 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH------------HHT--T--G------------
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc------------ccc--c--c------------
Confidence 5679999999999999999987 3 5799999999999776532210 000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|..++-. ...++||+|+.=.+=. .+..+ .++++.++++|||||+++.
T Consensus 135 ------~~dpRv~v~~~Dg~~~l~--~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 135 ------YDDPRFKLVIDDGVNFVN--QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp ------GGCTTEEEEESCTTTTTS--CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred ------cCCCcEEEEechHHHHHh--hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 001247889999888643 3468899998654411 11112 3799999999999999995
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.6e-05 Score=77.63 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=59.0
Q ss_pred eEEecccccccCCCCCCCCccEEEEecc---cCChh------------------------------------hHHHHHHH
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAH------------------------------------NIVEYIEI 301 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta~------------------------------------ni~~yl~~ 301 (394)
-|+.|.-..+|...+..++||+|++++- |...+ |...+|+.
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544445554456899999998863 32221 11223888
Q ss_pred HHHhccCCcEEEE--ec--Cc--------chh--hhhc--cCC--------CCCccccCCHHHHHHHHHhC-CCEEEEEe
Q 016155 302 ISRILKDGGVWIN--LG--PL--------LYH--FADL--YGQ--------EDEMSIELSLEDVKRVALHY-GFEFEKEK 356 (394)
Q Consensus 302 I~~~LKpGG~wIN--~G--PL--------lyh--~~~~--~g~--------~~~~~ieLS~eEl~~ll~~~-GF~ii~e~ 356 (394)
.++.|||||+++- .| .. +.. +.+. .|. -....+..|.+|++.++++. ||++.+.+
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999984 22 11 100 1110 010 01124567999999999987 59999865
Q ss_pred ec
Q 016155 357 TI 358 (394)
Q Consensus 357 ~i 358 (394)
..
T Consensus 291 ~~ 292 (384)
T 2efj_A 291 TF 292 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-06 Score=81.97 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=65.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
.+|||+|||+|+.+.+||.+|..|+|+|.|..|...++..++.+.... .+..
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~-------------------~~~~--------- 141 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-------------------EIGG--------- 141 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCT-------------------TTHH---------
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhH-------------------hhhh---------
Confidence 789999999999999999999999999999998766654443332100 0000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhhHHHHHHHHHHhccCCc
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
....++.++.+|..++.. ...+.||+|+.- .|-..... ..++...++|++.|
T Consensus 142 --~l~~~i~~~~~D~~~~L~--~~~~~fDvV~lDP~y~~~~~s--aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 142 --WLQERLQLIHASSLTALT--DITPRPQVVYLDPMFPHKQKS--ALVKKEMRVFQSLV 194 (258)
T ss_dssp --HHHHHEEEEESCHHHHST--TCSSCCSEEEECCCCCCCCC-------HHHHHHHHHS
T ss_pred --hhhcCEEEEECCHHHHHH--hCcccCCEEEEcCCCCCcccc--hHHHHHHHHHHHhh
Confidence 001248899999887532 112479999764 23222111 44566667776644
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=5.1e-06 Score=83.93 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||++||+|.++.++|.+ | -.|++||++..++..++.-+.. +
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~----N--------------------------- 100 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL----N--------------------------- 100 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH----T---------------------------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----h---------------------------
Confidence 4679999999999999999995 5 4799999999998665532211 0
Q ss_pred CCCCCCCCCCCc-eeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 248 DIHPASAGITEG-FSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 248 Dv~p~~~~~~~~-ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...++ +.++.+|..++.. . ..+.||+|+. |......++++.+.++|||||+++
T Consensus 101 -------gl~~~~v~v~~~Da~~~l~~~--~~~~fD~V~l----DP~g~~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 101 -------NIPEDRYEIHGMEANFFLRKE--WGFGFDYVDL----DPFGTPVPFIESVALSMKRGGILS 155 (392)
T ss_dssp -------TCCGGGEEEECSCHHHHHHSC--CSSCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCceEEEEeCCHHHHHHHh--hCCCCcEEEE----CCCcCHHHHHHHHHHHhCCCCEEE
Confidence 01122 6788899877532 1 1367999964 442223478999999999999776
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.9e-06 Score=78.02 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=36.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI----SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~----v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||+|.++..|+++|.. |+|+|+|..|+..++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~ 85 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLE 85 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHH
Confidence 5679999999999999999999988 999999999996554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=75.73 Aligned_cols=145 Identities=18% Similarity=0.104 Sum_probs=82.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-------C-------CeEEEEeCC---HHHHHHHhhhh----hccccccccccccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-------G-------FISQGNEFS---YYMMICSSFIL----NHTETAGEWNIYPWIH 229 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-------G-------f~v~G~D~S---~~ML~~s~fil----n~~~~~~~~~i~Pfi~ 229 (394)
+..+||++|+|+|..+..+++. + -.++++|.. ..||..+.... ..+.+ -...||-
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~--l~~~w~~-- 135 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQ--LQAQWPM-- 135 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHH--HHHTCCC--
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHH--HHHhccc--
Confidence 5679999999999988776543 2 378899954 47775432100 00000 0000110
Q ss_pred cccCCCCcccCccccccCCCCCCC-CCCCCceeEEecccccccCCCCCC----CCccEEEEecc-cCChhh--HHHHHHH
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQV----GAWDAVVTCFF-IDTAHN--IVEYIEI 301 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDf~ely~~~~~~----~~fD~VvT~fF-lDta~n--i~~yl~~ 301 (394)
.+|.+.-.. .....++.++.||+.++.. ... ..||+|+---| -...+. -.++|+.
T Consensus 136 ---------------~~~g~~r~~~~~~~~~l~l~~GDa~~~l~--~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~ 198 (257)
T 2qy6_A 136 ---------------PLPGCHRLLLDEGRVTLDLWFGDINELIS--QLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 198 (257)
T ss_dssp ---------------SCSEEEEEEEC--CEEEEEEESCHHHHGG--GSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHH
T ss_pred ---------------cccchhheeccCCceEEEEEECcHHHHHh--hcccccCCeEEEEEECCCCcccChhhcCHHHHHH
Confidence 000000000 0011348899999988542 112 27998853211 111111 2479999
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 302 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 302 I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++++|||||+++.+. ....+++.+..+||++.+..
T Consensus 199 l~~~L~pGG~l~tys--------------------aa~~vrr~L~~aGF~v~~~~ 233 (257)
T 2qy6_A 199 MARLARPGGTLATFT--------------------SAGFVRRGLQEAGFTMQKRK 233 (257)
T ss_dssp HHHHEEEEEEEEESC--------------------CBHHHHHHHHHHTEEEEEEC
T ss_pred HHHHcCCCcEEEEEe--------------------CCHHHHHHHHHCCCEEEeCC
Confidence 999999999999521 11357888889999988654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=78.99 Aligned_cols=148 Identities=15% Similarity=0.082 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc------------------CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL------------------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~------------------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
+..+|+|+||++|..+..++.. .+.|..||+..-+.-..-..|. +|.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~-----------~~~---- 115 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----------IEN---- 115 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT-----------TSC----
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc-----------hhc----
Confidence 4578999999999887766554 3678888887766522110010 000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCCh-----------------
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTA----------------- 292 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta----------------- 292 (394)
.. .+--|+.|.-..+|...+..+++|+|++.+- |...
T Consensus 116 ----~~-------------------~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~ 172 (359)
T 1m6e_X 116 ----DV-------------------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTC 172 (359)
T ss_dssp ----SC-------------------TTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSS
T ss_pred ----cc-------------------CCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCC
Confidence 00 0113344433334544456799999998863 3221
Q ss_pred -------------hhHHHHHHHHHHhccCCcEEEE--e-----cC------cchh-hhhc------cCC--C------CC
Q 016155 293 -------------HNIVEYIEIISRILKDGGVWIN--L-----GP------LLYH-FADL------YGQ--E------DE 331 (394)
Q Consensus 293 -------------~ni~~yl~~I~~~LKpGG~wIN--~-----GP------Llyh-~~~~------~g~--~------~~ 331 (394)
.|...+|+..++.|||||++|- . +| .+|. .... .|. . ..
T Consensus 173 p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~ 252 (359)
T 1m6e_X 173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNI 252 (359)
T ss_dssp CCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCC
Confidence 2455679999999999999983 2 23 1231 1111 121 0 11
Q ss_pred ccccCCHHHHHHHHHhC-CCEEEEEe
Q 016155 332 MSIELSLEDVKRVALHY-GFEFEKEK 356 (394)
Q Consensus 332 ~~ieLS~eEl~~ll~~~-GF~ii~e~ 356 (394)
..+..|.+|++.++++. +|++.+.+
T Consensus 253 P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 253 PQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp CCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred CccCCCHHHHHHHHHHcCCceEEEEE
Confidence 24567999999999988 55888755
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=78.40 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||+|.++..|+++ +..|+|+|.|..|+..++
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~ 67 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE 67 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5679999999999999999998 589999999999997766
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-05 Score=83.54 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=83.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-----f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
.+.+|||||||+|.+...++++. ..++|+|++..++..|+..+|..... ....+.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~--------------------LlhGi~ 380 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ--------------------LVSSNN 380 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT--------------------TCBTTB
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh--------------------hhcCCC
Confidence 56799999999999999998764 46899999999997773222211000 000000
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC--Chh------------------------h-HH
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--TAH------------------------N-IV 296 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD--ta~------------------------n-i~ 296 (394)
...+..+|+.+... ...+.||+||++ |... ... + -.
T Consensus 381 -------------~~~I~~dD~L~~~~--~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~ 445 (878)
T 3s1s_A 381 -------------APTITGEDVCSLNP--EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEA 445 (878)
T ss_dssp -------------CCEEECCCGGGCCG--GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHH
T ss_pred -------------cceEEecchhcccc--cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHH
Confidence 12345566665321 124689999988 4221 110 1 22
Q ss_pred HHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 297 EYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 297 ~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+++.+.+.|||||++.-+-|--|-+... -....+++.+.+. +.+..
T Consensus 446 aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg----------~~~kkLRk~LLe~-~~I~a 492 (878)
T 3s1s_A 446 LFLELVTELVQDGTVISAIMPKQYLTAQG----------NESKAFREFLVGN-FGLEH 492 (878)
T ss_dssp HHHHHHHHHSCTTCEEEEEEETHHHHCCS----------HHHHHHHHHHTTT-TCEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEChHHhccCC----------hHHHHHHHHHHhC-CCeEE
Confidence 36788899999999998766644322110 1256788877553 44443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-05 Score=70.32 Aligned_cols=45 Identities=9% Similarity=-0.175 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCC-hhHHHHHH-cCCeEEEEeCCHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLG-RLALEISH-LGFISQGNEFSYYM 205 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlG-RLa~eLA~-~Gf~v~G~D~S~~M 205 (394)
|.++|.+.+. .+.+||++|||.| |.|..||. .|++|+++|++...
T Consensus 25 LaeYI~~~~~-----~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A 71 (153)
T 2k4m_A 25 LAVYIIRCSG-----PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH 71 (153)
T ss_dssp HHHHHHHHSC-----SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred HHHHHHhcCC-----CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence 6677777663 4569999999999 89999997 99999999999855
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=81.72 Aligned_cols=40 Identities=10% Similarity=-0.073 Sum_probs=37.5
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
+.+|||+|||+|..+..||+.|..|+|+|+|..|+..++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~ 133 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARH 133 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 6799999999999999999999999999999999987763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.79 E-value=8.7e-05 Score=72.34 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||.|..+..||.+ +-.|+|+|+|..|+..++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~ 144 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999999999985 258999999999996655
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00034 Score=64.61 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=67.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+..+||++||| .-+..||++ |-.|+.+|.+..+...++-.+..+.-+
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~------------------------------ 77 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA------------------------------ 77 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC------------------------------
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------------------------
Confidence 35699999985 677888887 789999999999987766443321100
Q ss_pred CCCCCCCCCceeEEecccccc-----------------cC-----CCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 250 HPASAGITEGFSMCGGDFVEV-----------------YS-----DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~el-----------------y~-----~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
..+++.++.||..+. |. . ...++||+| |||-..- ..|+..+.+.||
T Consensus 78 ------~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlI----fIDg~k~-~~~~~~~l~~l~ 145 (202)
T 3cvo_A 78 ------EGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVV----LVDGRFR-VGCALATAFSIT 145 (202)
T ss_dssp ------TTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEE----EECSSSH-HHHHHHHHHHCS
T ss_pred ------CCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEE----EEeCCCc-hhHHHHHHHhcC
Confidence 012356666665442 10 0 023789998 5676542 488888889999
Q ss_pred CCcEEE
Q 016155 308 DGGVWI 313 (394)
Q Consensus 308 pGG~wI 313 (394)
|||++|
T Consensus 146 ~GG~Iv 151 (202)
T 3cvo_A 146 RPVTLL 151 (202)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 999998
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.7e-05 Score=75.19 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+||++|-|.|..+.|+.+..- .|+.+|+...++.+++--+ |..... . ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yf------------p~~~~~----~-------~d---- 257 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYM------------RKTCGD----V-------LD---- 257 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHC------------CC--------C-------CS----
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhc------------hhhhhh----h-------hc----
Confidence 467999999999999999998654 6999999999997765221 111000 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccC---C-----hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFID---T-----AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~fFlD---t-----a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|..++-.. ....++||+|+.=.|-. + +..+ .++++.++++|||||+++.
T Consensus 258 ----~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 258 ----NLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp ----SSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ----cccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 01123478889998764310 01246899998765421 1 1112 4678999999999999995
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00027 Score=68.34 Aligned_cols=164 Identities=7% Similarity=-0.009 Sum_probs=91.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
+.-.+++..++.+- ++..+|||+|||.|..+...+++ |. .|+|+|++..|.. + |
T Consensus 59 aA~KL~ei~ek~~l----~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~----------~-------p--- 114 (277)
T 3evf_A 59 GTAKLRWFHERGYV----KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE----------K-------P--- 114 (277)
T ss_dssp HHHHHHHHHHTTSS----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC----------C-------C---
T ss_pred HHHHHHHHHHhCCC----CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc----------c-------c---
Confidence 33346677776332 25668999999999999988876 54 5788888865410 0 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh------hHHHHHHHHH
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH------NIVEYIEIIS 303 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~------ni~~yl~~I~ 303 (394)
+|.. ..+.++..+.+++ ++.. ...+.||+|++-...++.. .....|+.+.
T Consensus 115 ----------------i~~~-----~~g~~ii~~~~~~-dv~~--l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~ 170 (277)
T 3evf_A 115 ----------------MNVQ-----SLGWNIITFKDKT-DIHR--LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVE 170 (277)
T ss_dssp ----------------CCCC-----BTTGGGEEEECSC-CTTT--SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----------------cccC-----cCCCCeEEEeccc-eehh--cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHH
Confidence 0000 0011233444554 2222 2357899999876444221 1123467778
Q ss_pred HhccCC-cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEE
Q 016155 304 RILKDG-GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMR 382 (394)
Q Consensus 304 ~~LKpG-G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~ 382 (394)
++|||| |.||- =.|. .+.-...++...+++. |+-++... + .+- ..=...||||+
T Consensus 171 ~~LkpG~G~FV~---KVf~-----------pyg~~~~~l~~~lk~~-F~~V~~~K---P-aSR------~~S~E~Y~V~~ 225 (277)
T 3evf_A 171 KWLACGVDNFCV---KVLA-----------PYMPDVLEKLELLQRR-FGGTVIRN---P-LSR------NSTHEMYYVSG 225 (277)
T ss_dssp HHHTTCCSEEEE---EESC-----------TTSHHHHHHHHHHHHH-HCCEEECC---T-TSC------TTCCCEEEESS
T ss_pred HHhCCCCCeEEE---EecC-----------CCCccHHHHHHHHHHh-cCCEEEEe---C-CCC------CCCCceEEEEe
Confidence 999999 99995 1111 0011234555555553 66554332 1 121 22255788887
Q ss_pred EcCccc
Q 016155 383 KKSVTI 388 (394)
Q Consensus 383 K~~~~~ 388 (394)
.+.+++
T Consensus 226 ~r~n~~ 231 (277)
T 3evf_A 226 ARSNVT 231 (277)
T ss_dssp CCCCHH
T ss_pred cCCCcc
Confidence 776654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=69.41 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
+++.|.+.+.. ++..||||+||+|.++.+++++|..++|+|++..|+..++--+
T Consensus 224 l~~~~i~~~~~----~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 224 LAERLVRMFSF----VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp HHHHHHHHHCC----TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 45555554432 5679999999999999999999999999999999998776433
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00093 Score=64.61 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=87.1
Q ss_pred HHHHHhhcCccc----ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-------CCeEEEEeC
Q 016155 133 IIRNIVRDWAAE----GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-------GFISQGNEF 201 (394)
Q Consensus 133 ~L~q~~RDWS~e----g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-------Gf~v~G~D~ 201 (394)
.++.+-+||... ...+|-.....++..+...- .+.+||++|+..|+-+..||.. +-.++++|.
T Consensus 70 ~~r~~g~~~~~~~~tmv~~~r~~~L~~l~~~v~~~~------~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 70 EVRNEGRDWPANAHTMIGIKRLENIRQCVEDVIGNN------VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp HHHHTTCSCBSSCSCSSHHHHHHHHHHHHHHHHHTT------CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred HHHhccccCCcccccccCHHHHHHHHHHHHHHHhcC------CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 477888999653 34677665555555555321 4569999999999988887643 567999996
Q ss_pred CHHHHHHHhhhhhccccccccccccccccccC-CCCcccCccccccCCCCCCCCCC-CCceeEEecccccccCCCCCCCC
Q 016155 202 SYYMMICSSFILNHTETAGEWNIYPWIHSNCN-SLSDSDQLRPVSIPDIHPASAGI-TEGFSMCGGDFVEVYSDPSQVGA 279 (394)
Q Consensus 202 S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn-~~~~~~qlr~v~iPDv~p~~~~~-~~~ls~~~GDf~ely~~~~~~~~ 279 (394)
-..+-.... +.........+ +.+.. ......+.|. .+. .... .+++.++.|||.+... ....++
T Consensus 144 feG~pe~~~---~~~~~d~~~~~----~~~~~~~~~~~~~ar~-n~~-----~~gl~~~~I~li~Gda~etL~-~~~~~~ 209 (282)
T 2wk1_A 144 FQGIPDVGE---DGYAGDRKMAL----HRRNSVLAVSEEEVRR-NFR-----NYDLLDEQVRFLPGWFKDTLP-TAPIDT 209 (282)
T ss_dssp SSCSCCCCT---TSCHHHHHHCG----GGGHHHHCCCHHHHHH-HHH-----HTTCCSTTEEEEESCHHHHST-TCCCCC
T ss_pred CCCCCcccc---ccccccccccc----ccccccchhHHHHHHH-HHH-----HcCCCcCceEEEEeCHHHHHh-hCCCCC
Confidence 432200000 00000000000 00000 0000000000 000 0011 2458999999988543 122456
Q ss_pred ccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEE
Q 016155 280 WDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 280 fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN 314 (394)
||+| |||.. ++..+||+.++..|+|||++|-
T Consensus 210 ~d~v----fIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 210 LAVL----RMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp EEEE----EECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEE----EEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 7776 66754 3567899999999999999984
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0019 Score=64.91 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+||+.|..++.|+++|-.|+|+|... |-- .+.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~------------------------------------ 249 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLM------------------------------------ 249 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHH------------------------------------
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhc------------------------------------
Confidence 688999999999999999999999999999863 310 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC---cEEEEe-cCcchhhhhcc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG---GVWINL-GPLLYHFADLY 326 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG---G~wIN~-GPLlyh~~~~~ 326 (394)
...++.++.+|+.++.. ..+.||+||+ |-+.+....++.+.++|..| +..+|+ -|+.-.+.
T Consensus 250 -----~~~~V~~~~~d~~~~~~---~~~~~D~vvs----Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~--- 314 (375)
T 4auk_A 250 -----DTGQVTWLREDGFKFRP---TRSNISWMVC----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYE--- 314 (375)
T ss_dssp -----TTTCEEEECSCTTTCCC---CSSCEEEEEE----CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHH---
T ss_pred -----cCCCeEEEeCccccccC---CCCCcCEEEE----cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHH---
Confidence 01237788999887542 2468999987 77777777777777777765 555553 22222222
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEE
Q 016155 327 GQEDEMSIELSLEDVKRVALHYGFEFE 353 (394)
Q Consensus 327 g~~~~~~ieLS~eEl~~ll~~~GF~ii 353 (394)
.+.-..+.+.+.+...||...
T Consensus 315 ------~l~~~~~~i~~~l~~~g~~~~ 335 (375)
T 4auk_A 315 ------EVSHNLAYIQAQLDEHGINAQ 335 (375)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCEE
T ss_pred ------HHHHHHHHHHHHHHhcCcchh
Confidence 122245677778888898743
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.16 E-value=0.013 Score=57.41 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~ 210 (394)
.+.+|||+-||.|.+...+.++|++ |.++|++...+.+.+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~ 50 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE 50 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHH
Confidence 4579999999999999999999997 568999998875544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0034 Score=65.48 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---------------Gf~v~G~D~S~~ML~~s~ 210 (394)
.+.+||||+||+|.+.....+. -....|+|+...|...++
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 5679999999999997665432 245899999999876655
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0019 Score=62.68 Aligned_cols=40 Identities=13% Similarity=-0.109 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
++..+||.+||.|..+..|++++..|+|+|.+..|+..++
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~ 61 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK 61 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999999999999889999999999997665
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0011 Score=64.10 Aligned_cols=50 Identities=8% Similarity=-0.106 Sum_probs=36.6
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHH
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYM 205 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~M 205 (394)
+.-.+++..++. .- .++.+|||+|||.|..+...+++ |. .|.|+|++..|
T Consensus 75 AAfKL~ei~eK~-~L---k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 75 GSAKLRWMEERG-YV---KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG 126 (282)
T ss_dssp HHHHHHHHHHTT-SC---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred HHHHHHHHHHhc-CC---CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence 334466666664 22 25669999999999999988854 54 57899999765
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=58.10 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=33.1
Q ss_pred CeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHh
Q 016155 173 PACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 210 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~ 210 (394)
.+|||+-||.|.++..|.+.||++ .|+|++...+.+.+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~ 41 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA 41 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 589999999999999999999985 59999998875443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0027 Score=61.02 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHH--HHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 170 ESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYY--MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~--ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
+++.+|||+||+-|.-+...|++ |. .|.|..+... ++ ++.
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~------------------------------------P~~ 115 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE------------------------------------PML 115 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC------------------------------------CCC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccC------------------------------------CCc
Confidence 37889999999999999999886 22 3445444331 10 000
Q ss_pred cCCCCCCCCCCCCc-eeEEec-ccccccCCCCCCCCccEEEEec-------ccCChhhHHHHHHHHHHhccCCc-EEEE
Q 016155 246 IPDIHPASAGITEG-FSMCGG-DFVEVYSDPSQVGAWDAVVTCF-------FIDTAHNIVEYIEIISRILKDGG-VWIN 314 (394)
Q Consensus 246 iPDv~p~~~~~~~~-ls~~~G-Df~ely~~~~~~~~fD~VvT~f-------FlDta~ni~~yl~~I~~~LKpGG-~wIN 314 (394)
.+ ..+-+ +.|..| ||+++. ...+|+|++=. .+|.+.-+. .|+-..++||||| .|+-
T Consensus 116 --~~-----~~Gv~~i~~~~G~Df~~~~-----~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 116 --MQ-----SYGWNIVTMKSGVDVFYKP-----SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp --CC-----STTGGGEEEECSCCGGGSC-----CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred --cc-----CCCceEEEeeccCCccCCC-----CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEE
Confidence 00 00101 456668 999853 35799999743 334433222 5666669999999 7874
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.044 Score=52.53 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=88.4
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~-G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
.+|||+=||.|.+..-|.+.||++. ++|++.....+.+ .|+..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~--~N~~~---------------------------------- 44 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE--SNHSA---------------------------------- 44 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHH--HHCCS----------------------------------
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHH--HHCCC----------------------------------
Confidence 3799999999999999999999865 9999998775433 22210
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-EecC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLGP 317 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-------------FlDta~ni~~yl~~I~~~LKpGG~wI-N~GP 317 (394)
.++.+|..++.. ..-...|+|+-.+ +-|.-..+...+-.|.+.+||--.++ |+--
T Consensus 45 ---------~~~~~DI~~i~~--~~~~~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~g 113 (331)
T 3ubt_Y 45 ---------KLIKGDISKISS--DEFPKCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKG 113 (331)
T ss_dssp ---------EEEESCGGGCCG--GGSCCCSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCG
T ss_pred ---------CcccCChhhCCH--hhCCcccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeecc
Confidence 123344444321 1112345555332 22333335544445566689976665 4433
Q ss_pred cchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 318 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 318 Llyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
++.+-. .-..+++.+.++++||.+...-.-...|+..... ...|+|+.|+
T Consensus 114 l~~~~~-----------~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R------~Rvfivg~r~ 163 (331)
T 3ubt_Y 114 MMAQRH-----------NKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDR------KRVFYIGFRK 163 (331)
T ss_dssp GGGCTT-----------SHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCC------EEEEEEEEEG
T ss_pred cccccc-----------cchhhhhhhhhccCCcEEEEEecccccCCCCccc------ceEEEEEEcC
Confidence 332211 1246788888999999876554444567654432 5678888876
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.017 Score=56.81 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCeEEEecCCCChhHHHHHHcC--Ce-EEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~-v~G~D~S~~ML~~s~ 210 (394)
+.+|||+-||.|.+...|..+| +. |.++|++...+.+.+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~ 43 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHH
Confidence 4589999999999999999999 44 789999998876544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0045 Score=60.40 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCC
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFS 202 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S 202 (394)
.|...+|..|+.=... +..=|..++-.+++..++.+- +++.+|||+||+.|..+..++++ |. .|.|+|++
T Consensus 43 ~dr~~ar~~l~~~~~~----~g~yrSRaa~KL~ei~ek~l~----~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg 114 (300)
T 3eld_A 43 VDRTAARRYLKEGRTD----VGISVSRGAAKIRWLHERGYL----RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG 114 (300)
T ss_dssp ECCHHHHHHHHHTCSS----SCCCSSTTHHHHHHHHHHTSC----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred ccHHHHHHHHHcCCcc----CCCccchHHHHHHHHHHhCCC----CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence 4455666666553211 011133333456666666221 26789999999999999999975 53 57899998
Q ss_pred HHH
Q 016155 203 YYM 205 (394)
Q Consensus 203 ~~M 205 (394)
..|
T Consensus 115 ~~~ 117 (300)
T 3eld_A 115 IEG 117 (300)
T ss_dssp CTT
T ss_pred ccc
Confidence 754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0084 Score=56.26 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.|-+.+. .++..||||.||+|..+.+.+++|..+.|+|++..++..++
T Consensus 201 l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 4555544443 25679999999999999999999999999999999987665
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.021 Score=56.90 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||..||-|.=+..||.++- .++++|.|..=+...+-.+.+..- +.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~-----------------------~~----- 199 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP-----------------------EE----- 199 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC-----------------------TT-----
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh-----------------------hh-----
Confidence 678999999999999999999876 699999999876443322221100 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e-----ccc---------CChhhH-------HHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C-----FFI---------DTAHNI-------VEYIEIISR 304 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~-----fFl---------Dta~ni-------~~yl~~I~~ 304 (394)
.....++.....|...+.. ...+.||.|+. | -.+ .+..++ .+.|+...+
T Consensus 200 -----~~~~~~v~v~~~D~~~~~~--~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~ 272 (359)
T 4fzv_A 200 -----IRDGNQVRVTSWDGRKWGE--LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLL 272 (359)
T ss_dssp -----TTTSSSEEEECCCGGGHHH--HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHH
T ss_pred -----hccCCceEEEeCchhhcch--hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 0112346777788776532 12478998872 1 111 112222 246778889
Q ss_pred hccCCcEEE
Q 016155 305 ILKDGGVWI 313 (394)
Q Consensus 305 ~LKpGG~wI 313 (394)
+|||||++|
T Consensus 273 ~lkpGG~LV 281 (359)
T 4fzv_A 273 ATKPGGHVV 281 (359)
T ss_dssp TEEEEEEEE
T ss_pred cCCCCcEEE
Confidence 999999998
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.13 Score=50.36 Aligned_cols=158 Identities=11% Similarity=0.065 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+...|+.+|||+...++.|... +..+.-+|+ +.++..-+.++........ .+. . .. .-|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~-~l~----~-------~~-----~~~~ 158 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRI-SLG----L-------SK-----EDTA 158 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHH-HHT----C-------CS-----SCCC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhh-hcc----c-------cc-----cccc
Confidence 4568999999999999999875 456667777 5555433333322100000 000 0 00 0000
Q ss_pred CCCCCCCCCCceeEEeccccccc-------CCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVY-------SDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely-------~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
.... .....+..++.+|+++.. ..+ ..+...++++- .||+.. .+...|+.|.+.+ |||.+|++.++
T Consensus 159 ~~~~-~~~~~~~~~v~~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 159 KSPF-LIDQGRYKLAACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp CTTE-EEECSSEEEEECCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred cccc-ccCCCceEEEecCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEEEEecc
Confidence 0000 001245788999998731 111 12334444432 466655 4778899998877 88999865322
Q ss_pred -------------chhhhhccCCCCCccc--cCCHHHHHHHHHhCCCE
Q 016155 319 -------------LYHFADLYGQEDEMSI--ELSLEDVKRVALHYGFE 351 (394)
Q Consensus 319 -------------lyh~~~~~g~~~~~~i--eLS~eEl~~ll~~~GF~ 351 (394)
.+++....| .+..++ -.+.++..+.+.+.||+
T Consensus 235 ~~~~~~~~fg~~m~~~l~~~rg-~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 235 GGSQPNDRFGAIMQSNLKESRN-LEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CCCSTTCCHHHHHHHHHHHHHC-CCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CCCCCcchHHHHHHHHhhcccC-CcccccccCCCHHHHHHHHHHCCCC
Confidence 122322111 121222 25899999999999998
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.14 Score=50.07 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eE--EEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--IS--QGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v--~G~D~S~~ML~~s~ 210 (394)
.+.+|||+-||.|.+..-|.+.|+ ++ .|+|++.....+.+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~ 52 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYS 52 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHH
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHH
Confidence 467999999999999999999995 54 59999998875443
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.061 Score=52.81 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=53.8
Q ss_pred EEecccccccCCCCCCCCccEEEEecc------cCC----hhhHHHH-HHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 262 MCGGDFVEVYSDPSQVGAWDAVVTCFF------IDT----AHNIVEY-IEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 262 ~~~GDf~ely~~~~~~~~fD~VvT~fF------lDt----a~ni~~y-l~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
++.||+.+++. .+.||+|++=.. .|. ...+.++ ++-+.+.|||||.|+-- -|+.
T Consensus 156 ~IqGD~~~~~~----~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK-----VFQG------ 220 (344)
T 3r24_A 156 TLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK-----ITEH------ 220 (344)
T ss_dssp EEESCGGGEEE----SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE-----ECSS------
T ss_pred EEEcccccccc----CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE-----EecC------
Confidence 38899887654 478999997542 222 2235554 55556789999999841 1221
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
+ . .+++.++. + -|+.++..- .+ +..+| ...|+|++..
T Consensus 221 --s-g--~~~L~~lr-k-~F~~VK~fK-~A---SRa~S------sEvYLVG~gf 257 (344)
T 3r24_A 221 --S-W--NADLYKLM-G-HFSWWTAFV-TN---VNASS------SEAFLIGANY 257 (344)
T ss_dssp --S-C--CHHHHHHH-T-TEEEEEEEE-EG---GGTTS------SCEEEEEEEE
T ss_pred --C-C--HHHHHHHH-h-hCCeEEEEC-CC---CCCCC------eeEEEEeeec
Confidence 1 1 25566665 3 698887552 11 11222 5577777654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.27 Score=48.13 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=31.8
Q ss_pred CeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHH
Q 016155 173 PACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICS 209 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf--~-v~G~D~S~~ML~~s 209 (394)
.+|||+=||.|.+..-|.+.|+ + |.++|++.....+.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty 43 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVY 43 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHH
Confidence 5899999999999999999997 4 56999999887543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=57.27 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=52.6
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 332 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD---ta~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~ 332 (394)
+.+..||+.+.... .....||+| |+| .+.|. .++|+.|+++|+|||+|+. |.
T Consensus 168 L~l~~GDa~~~l~~-l~~~~~Da~----flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT-----Yt----------- 226 (308)
T 3vyw_A 168 LKVLLGDARKRIKE-VENFKADAV----FHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS-----YS----------- 226 (308)
T ss_dssp EEEEESCHHHHGGG-CCSCCEEEE----EECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-----SC-----------
T ss_pred EEEEechHHHHHhh-hcccceeEE----EeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-----Ee-----------
Confidence 67889998875431 123467877 445 34444 4789999999999999984 21
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEe
Q 016155 333 SIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 333 ~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.-.+++.|.++||++.+..
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEE
T ss_pred ----CcHHHHHHHHHCCCEEEecC
Confidence 34678899999999998865
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.019 Score=50.60 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ |.|+.+..+++ .|+.|.+++.+...+.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~ 77 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 77 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 6789999994 77888777665 6999999999988764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.085 Score=51.66 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSY 203 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~ 203 (394)
+++.+++ +.- +.+.+|||+||+.|..+...|.+ |. .|.|+|+-.
T Consensus 83 L~ei~~~-~~l---~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~ 128 (321)
T 3lkz_A 83 LRWLVER-RFL---EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG 128 (321)
T ss_dssp HHHHHHT-TSC---CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred HHHHHHh-cCC---CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence 5455555 322 25669999999999999866555 65 489999876
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.98 Score=46.57 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHHhhCCCCCC---CCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHH
Q 016155 157 LEELDALFPNRSK---ESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS 209 (394)
Q Consensus 157 l~~L~~~~p~~~~---~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s 209 (394)
++.|+.++|.... +...+|||+=||.|.+..-|.+.||. |.++|++.....+.
T Consensus 70 ~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty 126 (482)
T 3me5_A 70 FAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTY 126 (482)
T ss_dssp HHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHH
T ss_pred HHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHH
Confidence 4667777775322 24679999999999999999999998 57999999776543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.023 Score=56.19 Aligned_cols=40 Identities=23% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|||. |.++..||+ +|. .|.++|.|...+..++
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 678999999986 899999987 598 8999999998875443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.046 Score=52.58 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+|. |.++..||+ +|..|.++|.|..-+..++
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 207 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR 207 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3678999999975 999999987 4999999999998775443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.077 Score=51.70 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+|. |.++..+|+ +|. .|.++|.|..-+..++
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~ 232 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 232 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3678999999986 888888887 598 6999999988775443
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.097 Score=50.74 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=32.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+|. |.++..||+. |.. |.++|.|..-+..++
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 221 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK 221 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 678999999876 8888888875 887 999999988775444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.096 Score=49.91 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEe--cccCC------------------hhhHHHHHHHHHHhccCCcEEE-EecC
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------------AHNIVEYIEIISRILKDGGVWI-NLGP 317 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt------------------a~ni~~yl~~I~~~LKpGG~wI-N~GP 317 (394)
...++.||.+++... ..+++||+|||. |+... ...+.+.++.++++|||||.++ ++|.
T Consensus 21 ~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTT-SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCEEEECcHHHHHhh-CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 368899999885321 235799999998 54211 0113456778999999999875 4553
Q ss_pred cchhhhhccCCCCCccccCC-HHHHHHHHHhCCCEEEEE
Q 016155 318 LLYHFADLYGQEDEMSIELS-LEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 318 Llyh~~~~~g~~~~~~ieLS-~eEl~~ll~~~GF~ii~e 355 (394)
....... .+ ....++ .+++..++++.||.+..+
T Consensus 100 ~~~~~~~-~g----~~~~~~~~~~l~~~~~~~Gf~~~~~ 133 (297)
T 2zig_A 100 VAVARRR-FG----RHLVFPLHADIQVRCRKLGFDNLNP 133 (297)
T ss_dssp EEEECC---------EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred Ccccccc-CC----cccccccHHHHHHHHHHcCCeeecc
Confidence 3211000 00 000112 467888999999987763
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.18 Score=48.90 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=32.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+|. |.++..||+ +|. .|.++|.|..-+..+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 212 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA 212 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 678999999985 888888887 598 899999998766433
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.16 Score=48.95 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=31.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+|. |.++..||+ +|..|.+++.|..-+..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~ 215 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQD 215 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 678999999975 888888887 49999999998876643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.087 Score=51.61 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+|. |.++..||+ +|+ .|.+++.+..-+..++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 224 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE 224 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 678999999876 888888887 498 8999999987765443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.3 Score=46.62 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+ |.|..+..+++ +|+.|.+++.+...+..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~ 185 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 185 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999998 88988777765 69999999999877643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.11 Score=50.83 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+|. |.++..||+ +|..|.+++.|..-+..+
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a 234 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA 234 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 678999999984 888888887 599999999998776443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.079 Score=51.24 Aligned_cols=40 Identities=13% Similarity=-0.067 Sum_probs=32.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+|. |.++..+|+. |. .|.++|.+..-+..++
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 208 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL 208 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 678999999886 8888888875 88 7999999987664443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.11 Score=51.46 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+|. |.++..||+ +|. .|.++|.|..-+..++
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4678999999865 888888886 499 8999999987765443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.13 Score=49.58 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=32.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+|. |.++..||+ +|+.|.+++.|..-+..++
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 209 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 209 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 678999999875 888888877 5999999999987765433
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.064 Score=51.62 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCCeEEEecCC--CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 170 ESPPACLVPGAG--LGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 170 ~~~~~VLvpGCG--lGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
+++.+||+.|+| .|.++..+|+ +|..|.+++.|..-+..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 184 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEE 184 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 367899999986 8999988877 59999999988766543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.13 Score=49.54 Aligned_cols=40 Identities=20% Similarity=0.133 Sum_probs=33.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+ |.|.++..+|+ +|+.|.+++.+..-+..+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~ 207 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA 207 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36789999998 78999888876 699999999998776443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.075 Score=50.88 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+.|+ |.|.++..+|+ +|+.|.+++.|..-+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~ 188 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCR 188 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 36789999998 78999888875 5999999999987654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.56 Score=45.71 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+| .|.++..+|+. |+ .|.++|.|..-+..++
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 367899999997 58888888875 98 7999999887765443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.075 Score=51.28 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+ |.|+++..+++ +|+.|.+++.|...+..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~ 209 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEEL 209 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHH
Confidence 6789999998 68999888876 69999999988776643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.11 Score=49.76 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ |.|.++..+|+ +|+.|.+++.+..-+.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~ 194 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVD 194 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6789999997 78999888876 6999999999987664
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.074 Score=50.95 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=32.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+ |.|.++..+|+ +|..|.+++.+..-+..+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 189 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA 189 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36789999994 78998888876 599999999988776443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.24 Score=47.04 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.7
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 016155 174 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 209 (394)
Q Consensus 174 ~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s 209 (394)
+||+.|+ |.|.++..||+. |..|.+++-|..-+..+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~ 187 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL 187 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4999997 789999999875 99999999988766433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.59 Score=44.54 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+||+.|..+...|.+ |. .|.|+|+-..= + +.| .
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~g---------h--------e~P---------------------~ 119 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPG---------H--------EEP---------------------V 119 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTT---------S--------CCC---------------------C
T ss_pred CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCC---------c--------cCc---------------------c
Confidence 6679999999999999866655 54 58899986511 0 111 1
Q ss_pred CCCCCCCC-CCceeEEec-ccccccCCCCCCCCccEEEEec-------ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGI-TEGFSMCGG-DFVEVYSDPSQVGAWDAVVTCF-------FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~-~~~ls~~~G-Df~ely~~~~~~~~fD~VvT~f-------FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
... .. -+.+.|..| |+..+. ...+|.|++=. .+|-+. -.+.|+-+.++|++ |-|+
T Consensus 120 ~~~---s~gwn~v~fk~gvDv~~~~-----~~~~DtllcDIgeSs~~~~vE~~R-tlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 120 PMS---TYGWNIVKLMSGKDVFYLP-----PEKCDTLLCDIGESSPSPTVEESR-TIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp CCC---CTTTTSEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHH-HHHHHHHHGGGCSS-CEEE
T ss_pred hhh---hcCcCceEEEeccceeecC-----CccccEEEEecCCCCCChhhhhhH-HHHHHHHHHHhccc-CCEE
Confidence 110 11 134889999 875442 26699998643 122221 22366667799999 6665
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.16 Score=49.02 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 208 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~ 208 (394)
+++.+||+.|+ |.|.++..+|+. |+.|.+++.+..-+..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 199 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEF 199 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 36789999997 789998888764 9999999998766543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=91.87 E-value=0.3 Score=48.41 Aligned_cols=36 Identities=11% Similarity=-0.189 Sum_probs=32.3
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHH
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMI 207 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~ 207 (394)
+..||++|.|+|-|+..|+.+ +-.|+++|+...++-
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~ 96 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 96 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence 578999999999999999987 668999999998763
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.43 Score=45.17 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+.|+| .|.++..||+. |..|.+++ |..-+.
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~ 179 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQA 179 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHH
Confidence 478899999997 58888888875 99999999 876554
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=3.1 Score=46.67 Aligned_cols=40 Identities=15% Similarity=-0.090 Sum_probs=34.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC-e-EEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGF-I-SQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf-~-v~G~D~S~~ML~~s 209 (394)
....++||+=||.|.+..-|.+.|+ . |.|+|+......+.
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty 579 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAF 579 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHH
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHH
Confidence 3667999999999999999999998 4 66999999887543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.077 Score=50.74 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.| .|.|.++..+|+ +|..|.+++.+..-+..+
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 181 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA 181 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3678999998 478999888876 599999999998776443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.41 Score=46.28 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
+++.|-+.+. .++..||||=||.|..+.+-.++|....|+|++..+...+.-
T Consensus 241 l~~~~i~~~~----~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 241 LPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAF 292 (323)
T ss_dssp HHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHG
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence 4455444443 257799999999999999999999999999999999876653
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=91.37 E-value=2.9 Score=42.06 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=33.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--Ce-----EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FI-----SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~-----v~G~D~S~~ML~~s~ 210 (394)
+..+||++=||.|.+..-|.+.| +. |.++|++...+.+.+
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~ 55 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYV 55 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHH
Confidence 56799999999999999998888 33 568999998876544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.28 E-value=1.1 Score=43.57 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+|. |.++..+|+ +|. .|.+++.|..-+..+
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~ 233 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA 233 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 3678999999874 888888877 598 799999988776543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.49 Score=45.96 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=31.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+|. |.++..||+. |. .|.++|.|..-+..+
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 232 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA 232 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 3678999999874 8888888874 98 799999988766443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.2 Score=48.21 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf-~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| .|.++..+|+ +|+ .|.+++.|..-+..+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~ 208 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA 208 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 56789999987 4888888876 599 999999998766433
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=1 Score=43.62 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+|. |.++..||+ +|. .|.+++.|..-+..++
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~ 232 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3678999999875 888888887 498 7999999887764433
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.44 Score=46.26 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=32.3
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+|. |.++..+|+ +|..|.+++.+..-+..+
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 229 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA 229 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH
Confidence 3678999999875 888888877 499999999998766443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.22 Score=47.83 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| .|.++..+|+ +|..|.+++.|..-+..
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 203 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLEL 203 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 67799999986 6888888776 59999999999876643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=90.84 E-value=0.15 Score=49.51 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=30.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| .|.++..+|+ +|..|.+++.|..-+..
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~ 218 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED 218 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 67899999986 4888888877 59999999988766543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.70 E-value=0.6 Score=45.34 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=31.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+|. |.++..+|+ +|. .|.+++.|..-+..+
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~ 232 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA 232 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 3678999999875 888888876 598 799999988776443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.64 E-value=0.096 Score=49.43 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ |.|.++..+|+ +|..|.+++.+..-+.
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~ 164 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 164 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6789999998 78999888876 5999999999876553
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.2 Score=48.85 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.| .|.|.++..+|+ +|+.|.+++.+..-+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~ 203 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 203 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 678999999 578999888876 59999999999766543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.12 Score=49.38 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+ |.|..+..+++ +|+.|.+++.+..-+..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~ 185 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAET 185 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999995 78998777765 69999999999866543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.16 Score=49.28 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+.|+ |.|..+..+|+ +|+.|.+++.+..-+.
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~ 209 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK 209 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence 36789999996 78888877765 6999999999987664
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.22 Score=47.90 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~---Gf~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+|. |.++..||+. |..|.+++.|..-+..+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~ 212 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA 212 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 466999999874 8888888764 99999999998776443
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.11 Score=49.42 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=31.1
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
++.+||+.| .|.|..+..+++ +|+.|.+++.+..-+..
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~ 180 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 180 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 678999999 578888777765 69999999999876643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=1.4 Score=42.65 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCG-lGRLa~eLA~-~Gf-~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+| .|.++..||+ +|. .|.++|.|..-+..+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 236 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 367899999987 4888888887 498 799999988766433
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.15 Score=49.12 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.1
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf-~v~G~D~S~~ML 206 (394)
++.+||+.|+| .|.++..+|+ +|. .|.+++.|..-+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~ 202 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL 202 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 46789999976 4788888877 599 899999997654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.32 Score=47.04 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.| .|.|.++..+|+ +|+.|.+++.|..-+..++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 209 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE 209 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4678999995 468999888876 5999999999987765433
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.49 Score=50.11 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=51.5
Q ss_pred ceeEEecccccccCC-CC-CCCCccEEEEecccCCh---hhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 259 GFSMCGGDFVEVYSD-PS-QVGAWDAVVTCFFIDTA---HNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 259 ~ls~~~GDf~ely~~-~~-~~~~fD~VvT~fFlDta---~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.+.++.||..+.... +. ..+.+|++ |+|-. .|. .++|..+.+++||||.+.-+.
T Consensus 149 ~l~l~~gd~~~~l~~~~~~~~~~~da~----flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------------- 211 (689)
T 3pvc_A 149 TLDLWFGDVNTLLPTLDDSLNNQVDAW----FLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------------- 211 (689)
T ss_dssp EEEEEESCHHHHGGGCCGGGTTCEEEE----EECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------------
T ss_pred EEEEEccCHHHHHhhcccccCCceeEE----EECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------------
Confidence 388999999876431 10 13567776 66632 222 578999999999999987311
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
....+++.+.++||.+.+..
T Consensus 212 -------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEE
T ss_pred -------CcHHHHHHHHhCCeEEEecc
Confidence 22578899999999988744
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.32 Score=47.10 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.| .|.|..+..+++ +|+.|.+++.+..-+..+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 203 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA 203 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3678999998 478888777765 699999999998776443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.27 Score=48.17 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cC-CeEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LG-FISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~G-f~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| .|.++..||+ +| ..|.+++.|..-+..+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~ 236 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA 236 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence 67899999976 5888888877 48 6999999998776443
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=0.39 Score=46.10 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc--CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL--GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~--Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+|. |.++..||+. |..|.++|.|..-+..++
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~ 213 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR 213 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 678999999876 8889999875 789999999998765443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.98 Score=39.06 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GR-LALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~-Gf~v~G~D~S~~ML 206 (394)
.+.+|++.|+|. |+ ++..|.+. |+.|+++|.+..-+
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~ 76 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAA 76 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHH
Confidence 356899998763 32 24556677 99999999998665
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.24 Score=47.77 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=30.2
Q ss_pred CC--CeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 016155 171 SP--PACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~--~~VLvpGC--GlGRLa~eLA~-~Gf-~v~G~D~S~~ML~ 207 (394)
++ .+||+.|+ |.|.++..+++ +|+ .|.+++.+..-+.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~ 200 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI 200 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 56 89999997 78888877765 699 9999999876553
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=88.92 E-value=0.65 Score=46.32 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+ |.|.++..+|+. |..|.+++-+..-+..+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~ 261 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV 261 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 36789999996 678998888775 99999999888766443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.82 E-value=1.1 Score=43.17 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=54.5
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEe--cccCC------------hhhHHHHHHHHHHhccCCcEEE-EecCcchhhh
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------AHNIVEYIEIISRILKDGGVWI-NLGPLLYHFA 323 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt------------a~ni~~yl~~I~~~LKpGG~wI-N~GPLlyh~~ 323 (394)
...++.||.+++... ...++||+|+|- |.... ...+.+.|+.++++|||||.++ +++.. | .
T Consensus 14 ~~~ii~gD~~~~l~~-l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~-~--~ 89 (323)
T 1boo_A 14 NGSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-Y--M 89 (323)
T ss_dssp SEEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-E--E
T ss_pred CceEEeCcHHHHHhh-CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE-e--c
Confidence 367889998774321 235789999987 54431 1236678899999999999876 34422 1 0
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 324 DLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 324 ~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
. + .+. .-.+....+..+++..||.+..
T Consensus 90 ~--g-~~~-~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 90 K--G-VPA-RSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp T--T-EEE-ECCHHHHHHHHHHHTTCCEEEE
T ss_pred C--C-Ccc-cccchHHHHHHHHHhCCCEEEE
Confidence 0 0 000 0012345677788899998775
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.79 E-value=0.56 Score=47.10 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=32.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|..=+..+
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~ 269 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC 269 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 36789999997 689999988874 99999999887665443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=88.36 E-value=2.1 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=24.3
Q ss_pred eEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
+||+.|+ |+|+ ++..|+++|+.|.+++-+..-+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA 37 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 6999996 3444 3566677899999999887543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.26 E-value=1.7 Score=38.68 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ |+|+ ++..|+++|+.|.+++-+..-+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~ 58 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG 58 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH
Confidence 5679999997 4454 4667778899999999876543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.25 E-value=1.4 Score=40.13 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=28.8
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG----LGR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG----lGR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
++.+||+-|++ .|+ ++..|+++|+.|..++-+....
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~ 46 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLE 46 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHH
Confidence 46789999965 666 6889999999999998876443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.99 E-value=0.38 Score=45.74 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=28.2
Q ss_pred eEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 174 ACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 174 ~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
+||+.|+ |.|.++..+|+ +|+.|.+++-+..-+.
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~ 188 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 188 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 7999997 78999988886 5999999998865443
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=12 Score=40.19 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=32.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC------CeE-EEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG------FIS-QGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G------f~v-~G~D~S~~ML~~s 209 (394)
+..+|||+=||.|.|+.=|.+.| |+| .++|++..+..+-
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty 256 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSL 256 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHH
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHH
Confidence 55789999999999988888777 765 5999999887543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.62 E-value=1.7 Score=38.29 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=21.2
Q ss_pred eEEEecCCCChhHH----HHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRLAL----EISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRLa~----eLA~~Gf~v~G~D~S~ 203 (394)
+||+.|+ +|.++. .|+++|+.|.+++-+.
T Consensus 2 ~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEEEEST-TSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred eEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6999994 455544 4556699999998775
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=87.36 E-value=1 Score=43.53 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+| .|.++..||+. |..|.+++-+..-+
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~ 217 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR 217 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence 56799999986 47777787764 99999999987654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=0.52 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=27.4
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 174 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+||+.|+ |.|.++..+|+. |+.|.+++-+..-+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~ 188 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 188 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 7999997 789998888764 99999999886544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=86.93 E-value=0.92 Score=43.78 Aligned_cols=138 Identities=11% Similarity=-0.024 Sum_probs=84.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
..|+++.|... ++..+||.=+|+|.++.|+...|-.++.+|.+..-+..-+ +.
T Consensus 80 l~~yf~~l~~~-------n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~---~N----------------- 132 (283)
T 2oo3_A 80 FLEYISVIKQI-------NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLL---KL----------------- 132 (283)
T ss_dssp GHHHHHHHHHH-------SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHT---TS-----------------
T ss_pred HHHHHHHHHHh-------cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HH-----------------
Confidence 45788888874 3446899999999999999998888999999997763211 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChh----hHHHHHHHHHH--h
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAH----NIVEYIEIISR--I 305 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e-ly~~~~~~~~fD~VvT~fFlDta~----ni~~yl~~I~~--~ 305 (394)
.. ...++.++.+|... +.........||+| |||..- ...+.++.|.+ .
T Consensus 133 -l~--------------------~~~~~~V~~~D~~~~L~~l~~~~~~fdLV----fiDPPYe~k~~~~~vl~~L~~~~~ 187 (283)
T 2oo3_A 133 -PH--------------------FNKKVYVNHTDGVSKLNALLPPPEKRGLI----FIDPSYERKEEYKEIPYAIKNAYS 187 (283)
T ss_dssp -CC--------------------TTSCEEEECSCHHHHHHHHCSCTTSCEEE----EECCCCCSTTHHHHHHHHHHHHHH
T ss_pred -hC--------------------cCCcEEEEeCcHHHHHHHhcCCCCCccEE----EECCCCCCCcHHHHHHHHHHHhCc
Confidence 00 01235677778543 22100123569988 678742 34455666654 4
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.|+|+.+ +.|..-+. . ..+.+.+-+++.|.++...+
T Consensus 188 r~~~Gi~v----~WYPi~~~---------~-~~~~~~~~l~~~~~~~l~~e 224 (283)
T 2oo3_A 188 KFSTGLYC----VWYPVVNK---------A-WTEQFLRKMREISSKSVRIE 224 (283)
T ss_dssp HCTTSEEE----EEEEESSH---------H-HHHHHHHHHHHHCSSEEEEE
T ss_pred cCCCeEEE----EEEeccch---------H-HHHHHHHHHHhcCCCeEEEE
Confidence 66899998 44432211 0 23455556666676555533
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=86.58 E-value=0.83 Score=43.92 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+.|+ |.|.++..+|+. |+.|.++ .|..-+.
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~ 188 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE 188 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH
Confidence 46789999994 679998888765 9999999 7776554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=0.45 Score=47.06 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCChhHHHH----HHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEI----SHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eL----A~~Gf~v~G~D~S~~ML 206 (394)
.+.+|+++|+| +.+..+ +..|..|++.|.+..-+
T Consensus 167 ~g~~V~ViG~G--~iG~~~a~~a~~~Ga~V~~~d~~~~~l 204 (377)
T 2vhw_A 167 EPADVVVIGAG--TAGYNAARIANGMGATVTVLDINIDKL 204 (377)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 56799999984 444333 34599999999998665
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=0.79 Score=44.55 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=28.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+|. |.++..+|+ +|+.|.+++-|..-+
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~ 224 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKK 224 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 567999999763 677777765 499999999887654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.37 E-value=1.1 Score=43.48 Aligned_cols=51 Identities=18% Similarity=-0.016 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH---HHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSY---YMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~---~ML~~s~ 210 (394)
+++.|-+.+.+ ++..||||=||.|..+.+..++|....|+|++. .+...+.
T Consensus 231 l~~~~i~~~~~----~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~ 284 (319)
T 1eg2_A 231 VIERLVRALSH----PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQL 284 (319)
T ss_dssp HHHHHHHHHSC----TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHH
Confidence 55555554432 567999999999999999999999999999999 7765544
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.4 Score=40.73 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=26.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.|+++|+|...| |..|+++|++|+-+|-+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 599999999998 77899999999999954
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=86.10 E-value=0.78 Score=44.32 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.7
Q ss_pred CeEEEecCC-CChhH-HHHH-H-cCCe-EEEEeCCHH
Q 016155 173 PACLVPGAG-LGRLA-LEIS-H-LGFI-SQGNEFSYY 204 (394)
Q Consensus 173 ~~VLvpGCG-lGRLa-~eLA-~-~Gf~-v~G~D~S~~ 204 (394)
.+||+.|+| .|.++ ..|| + +|.. |.+++-+..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~ 210 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR 210 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence 799999975 48888 8888 4 5997 999998875
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=85.87 E-value=4.4 Score=39.76 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=70.5
Q ss_pred CCeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGl-G-RLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|.++|+|. | .++..|++.|+.|++.|.+..-+.... . . .+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~---~----~-----------------------g~~---- 67 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE---R----E-----------------------GIA---- 67 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH---T----T-----------------------TCB----
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH---H----C-----------------------CCE----
Confidence 46899999873 3 347778888999999999986543111 0 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
...+..++.. .....|+|+.+.--+ .+.+.++.+...|+||-++|+.+-..+
T Consensus 68 -------------~~~s~~e~~~---~a~~~DvVi~~vp~~---~v~~vl~~l~~~l~~g~iiId~st~~~--------- 119 (358)
T 4e21_A 68 -------------GARSIEEFCA---KLVKPRVVWLMVPAA---VVDSMLQRMTPLLAANDIVIDGGNSHY--------- 119 (358)
T ss_dssp -------------CCSSHHHHHH---HSCSSCEEEECSCGG---GHHHHHHHHGGGCCTTCEEEECSSCCH---------
T ss_pred -------------EeCCHHHHHh---cCCCCCEEEEeCCHH---HHHHHHHHHHhhCCCCCEEEeCCCCCh---------
Confidence 0012222211 113459998875433 466788899999999999998543322
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
-+..++.+.+.+.|...+.
T Consensus 120 ------~~~~~~~~~l~~~g~~~vd 138 (358)
T 4e21_A 120 ------QDDIRRADQMRAQGITYVD 138 (358)
T ss_dssp ------HHHHHHHHHHHTTTCEEEE
T ss_pred ------HHHHHHHHHHHHCCCEEEe
Confidence 1234455556667777665
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=85.60 E-value=0.55 Score=47.13 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=26.9
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eL-A~~Gf~v~G~D~S~~ML 206 (394)
++.+|+++|+|. |+.+..+ ..+|..|++.|.+..-+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l 220 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVA 220 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 567999999984 4444443 44599999999998654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.30 E-value=2.5 Score=39.23 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=48.1
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCCh------------hhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhc
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA------------HNIVEYIEIISRILKDGGVWIN-LGPLLYHFADL 325 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta------------~ni~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~ 325 (394)
.++.||.+++... ...++||+|+|- |..... .-+.+.++.++++|||||.++- .++ +
T Consensus 6 ~l~~gD~~~~l~~-l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d----~--- 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP----F--- 77 (260)
T ss_dssp SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH----H---
T ss_pred eEEechHHHHHHh-ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc----H---
Confidence 5678887664321 124789999876 554311 1245677888999999998763 221 0
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 326 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 326 ~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
....+..++...||.+..+
T Consensus 78 -----------~~~~~~~~~~~~gf~~~~~ 96 (260)
T 1g60_A 78 -----------NCAFICQYLVSKGMIFQNW 96 (260)
T ss_dssp -----------HHHHHHHHHHHTTCEEEEE
T ss_pred -----------HHHHHHHHHHhhccceeEE
Confidence 1234566778889987664
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.7 Score=42.34 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=122.1
Q ss_pred ccCCCCCCCccccchHHHhhhhcccccccCCCCC-------CCCCCCCCCcCCCCCCcchHHHHHHHHHHhhcCcccCh-
Q 016155 75 EYKTASCPGKLENREETNQSCSNDFTDSNGNASS-------PACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGK- 146 (394)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~kv~~~L~q~~RDWS~eg~- 146 (394)
.-.-.-++|+|-+|.-=+++++..+ |-|+-|. .+++|-.+.. ..-+.-=..+.+++.|-+.---.
T Consensus 37 F~eDka~S~e~aLn~ictr~~G~Dl--dSGlfS~p~v~l~y~~~HWdNspg-----~~myG~n~~v~~~l~~r~p~~~~~ 109 (320)
T 2hwk_A 37 FETDKAHSAEIVLNQLCVRFFGLDL--DSGLFSAPTVPLSIRNNHWDNSPS-----PNMYGLNKEVVRQLSRRYPQLPRA 109 (320)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHSCCG--GGCTTBSSSEECEEETTEEECCSC-----SCEEBCCHHHHHHHHTTCTTHHHH
T ss_pred cccccccCHHHHHHHHHHHhhcccc--CcccccCCccceeeccccccCCCC-----ccccCcCHHHHHHHHHhCchhhhh
Confidence 3344567899999988888888666 5553311 1255654331 22223334566677666642100
Q ss_pred ---------hHHh-hchHHHHHHHHhhCCCCCCCCCCeEEEe---cCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhh
Q 016155 147 ---------TERD-QCYKPILEELDALFPNRSKESPPACLVP---GAGLGRLALEISHL-GFISQGNEFSYYMMICSSFI 212 (394)
Q Consensus 147 ---------~ER~-~~y~pIl~~L~~~~p~~~~~~~~~VLvp---GCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~fi 212 (394)
.++. +-|.|-. ..+|- +|.-...||+ .++.|+..+.+.+. |+.|.-+|. .|.+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~----n~vP~--NRrlPH~Lv~~~~~~~~~~~~~~~~k~~g~~vl~v~~--~~~~----- 176 (320)
T 2hwk_A 110 VATGRVYDMNTGTLRNYDPRI----NLVPV--NRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGE--KLSV----- 176 (320)
T ss_dssp HHHTCEECTTTSSEECCCTTS----CCSCT--TSCCSSCCCSCCCCCCCCCCHHHHHTSSCSEEEEEES--CCCC-----
T ss_pred cccCeEEeccCCccccCCccc----ceecc--ccCCCcchhhhhhccCCCCHHHHHhhCCCcEEEEEec--cccc-----
Confidence 0000 0111110 11121 2333455655 68899998888776 888877743 3321
Q ss_pred hhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEE-ecccccccCCCCCCCCccEEEEec----
Q 016155 213 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMC-GGDFVEVYSDPSQVGAWDAVVTCF---- 287 (394)
Q Consensus 213 ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~-~GDf~ely~~~~~~~~fD~VvT~f---- 287 (394)
..+.-. -|+| + .+..+. .+||.+- ...+.+|+|++-.
T Consensus 177 ---p~k~v~-wi~P-------------------i-----------~GAt~~~~lDfg~p----~~~~k~DvV~SDMApn~ 218 (320)
T 2hwk_A 177 ---PGKMVD-WLSD-------------------R-----------PEATFRARLDLGIP----GDVPKYDIIFVNVRTPY 218 (320)
T ss_dssp ---TTSEEE-EEES-------------------S-----------TTCSEECCGGGCSC----TTSCCEEEEEEECCCCC
T ss_pred ---CCceeE-eecc-------------------C-----------CCceeecccccCCc----cccCcCCEEEEcCCCCC
Confidence 111111 1111 0 123444 7787762 2347799999763
Q ss_pred ---c----cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccc
Q 016155 288 ---F----IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIET 360 (394)
Q Consensus 288 ---F----lDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~ 360 (394)
- +|.+.-+.-.++-..++|||||.||- -.|++.|. ..++|...+.+. |+.++.-...+
T Consensus 219 sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~---KvyggaDr-----------~se~lv~~LaR~-F~~Vr~vKP~A 283 (320)
T 2hwk_A 219 KYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVS---IGYGYADR-----------ASESIIGAIARQ-FKFSRVCKPKS 283 (320)
T ss_dssp CSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEE---EECCCCSH-----------HHHHHHHHHHTT-EEEEEEECCTT
T ss_pred CCccccccchHHHHHHHHHHHHHHhcCCCceEEE---EEecCCcc-----------cHHHHHHHHHHh-cceeeeeCCCC
Confidence 1 44443333356666699999999996 24544432 347888888664 98887442221
Q ss_pred cCCCCcccccccccceEEEEEEEc
Q 016155 361 TYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 361 ~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
.=. =...|+|++.-
T Consensus 284 SR~----------StEvf~La~gf 297 (320)
T 2hwk_A 284 SLE----------ETEVLFVFIGY 297 (320)
T ss_dssp CCS----------TTCEEEEEEEE
T ss_pred ccc----------cceEEEEEEee
Confidence 111 24578888763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=85.09 E-value=0.44 Score=58.18 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=26.8
Q ss_pred CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc-hhhhhccC-----CCCCccccCCHHHHHHHHHhCCC
Q 016155 277 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL-YHFADLYG-----QEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 277 ~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl-yh~~~~~g-----~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
...||+||....|...+++.+.+..+.++|||||++|-..+.. +.+....+ ..+ ..-.++.++..+++...||
T Consensus 1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~-~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQG-GRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp ---CCEEEEECC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTE
T ss_pred CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccccccccccccccccc-CCcccCHHHHHHHHHhCCC
Confidence 3579999988888877889999999999999999987532110 00000000 000 0112566666677888999
Q ss_pred EEEEE
Q 016155 351 EFEKE 355 (394)
Q Consensus 351 ~ii~e 355 (394)
..+..
T Consensus 1388 ~~~~~ 1392 (2512)
T 2vz8_A 1388 HLVAL 1392 (2512)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 87653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=5.4 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.4
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHH
Q 016155 172 PPACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMI 207 (394)
Q Consensus 172 ~~~VLvpGCGl--GRLa~eLA~~Gf--~v~G~D~S~~ML~ 207 (394)
..+|.++|+|. |.++..|++.|+ .|++.|.+..-+.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~ 72 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS 72 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence 36899999885 456788888999 9999999986653
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=84.54 E-value=0.43 Score=47.62 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.1
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
++|+|+|+|.+.| |+.||++|++|+-+|-+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 4799999999999 788999999999988654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.52 E-value=0.97 Score=44.35 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCeEEEecCC-CChhH-HHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLA-LEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa-~eLA~~Gf~v~G~D~S~~ML 206 (394)
.+.+|++.|+| .|+.+ ..++..|..|++.|.+..-+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~ 202 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRL 202 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 45799999984 23332 33445699999999998655
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.49 E-value=1.4 Score=42.88 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCCeEEEec--CCCChhHHHHHHc--CCeEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL--GFISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s 209 (394)
++.+||+.| .|.|.++..||+. |..|.+++-+..-+..+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~ 213 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV 213 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 567899998 4569999999985 89999999998766433
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=1.7 Score=42.06 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=26.1
Q ss_pred CCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCH
Q 016155 172 PPACLVPGAG-LGRLALEISH-LGFISQGNEFSY 203 (394)
Q Consensus 172 ~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~ 203 (394)
+.+||+.|+| .|.++..+|+ +|+.|.+++.+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 6799999985 4777777765 599999999986
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=5.6 Score=37.20 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=28.3
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAG----LGR-LALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCG----lGR-La~eLA~~Gf~v~G~D~S~~M 205 (394)
++++||+-|++ .|+ ++..|+++|+.|..++.+..-
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~ 69 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL 69 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 56789999965 554 688899999999999988643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.08 E-value=8.6 Score=34.83 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=22.9
Q ss_pred CeEEEecCCCChhHHHH----HHcCCeEEEEeCCHH
Q 016155 173 PACLVPGAGLGRLALEI----SHLGFISQGNEFSYY 204 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eL----A~~Gf~v~G~D~S~~ 204 (394)
.+||+.|+ |.++..| .++|+.|.+++-+..
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChh
Confidence 58999995 7765554 556999999987753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=1 Score=43.78 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+.|+ |.|.++..||+. |+.|.++- |..=+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~ 202 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD 202 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH
Confidence 36789999998 489999999875 99998874 665443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=83.70 E-value=4.4 Score=38.58 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=28.9
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
...+|.++|+|. |+ ++..|++.|+.|++.|.+..-+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~ 67 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARA 67 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHH
Confidence 456899999984 43 5778888999999999998654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=83.58 E-value=3.1 Score=42.97 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=25.2
Q ss_pred CCCeEEEecCCC-ChhHH-HHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLAL-EISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~-eLA~~Gf~v~G~D~S~~ML 206 (394)
.+.+|+++|+|. |+.+. .+...|..|.+.|.+..-+
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~ 310 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINA 310 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 678999999752 33322 2334599999999998654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=0.78 Score=45.35 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA-~~Gf~v~G~D~S~~ML 206 (394)
.+.+|+++|+|. |+.+..++ .+|..|++.|.+..-+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~ 208 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK 208 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 577999999874 44444444 4599999999987544
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.45 E-value=3.3 Score=39.02 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=27.9
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 172 PPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 172 ~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
..+|.++|+|. +.++..|++.|+.|++.|.+..-+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~ 43 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQAC 43 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45899998874 335777888899999999998654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=83.16 E-value=19 Score=33.91 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhcCcccChhHHhhchH---------HHHH--HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----
Q 016155 128 DKVRCIIRNIVRDWAAEGKTERDQCYK---------PILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISHL---- 192 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg~~ER~~~y~---------pIl~--~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---- 192 (394)
-.++.-|.+++++++. ..+|+...|. .++. +|-+.+-+ -+..|++.|+-.|.-+..+|..
T Consensus 20 ~~~~~~l~~~~~~~~~-~~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~~----vpG~ivE~GV~rG~S~~~~a~~~~~l 94 (257)
T 3tos_A 20 TETTQRLTKLLTNSPI-PTEELVNNLPLFLRRHQMTDLLSMDALYRQVLD----VPGVIMEFGVRFGRHLGTFAALRGVY 94 (257)
T ss_dssp HHHHHHHHHHHHTCCS-CGGGGGGCGGGGCCHHHHHHHHHHHHHHHHTTT----SCSEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChHHHHHhHHhhhhHHHHHHHHHHHHHHHHhhC----CCCeEEEEecccCHHHHHHHHHHHHh
Confidence 4467788889999985 3455544442 1221 23233221 4568999999999988887653
Q ss_pred -----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccc--------ccCCCCCCCCCCCCc
Q 016155 193 -----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV--------SIPDIHPASAGITEG 259 (394)
Q Consensus 193 -----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v--------~iPDv~p~~~~~~~~ 259 (394)
.-.|.|.|-=.-|-... ......... ....++......+.++.+ .+|. ...+
T Consensus 95 ~~~~~~r~v~~fDTFeG~P~~~------~~D~~~~~~--~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~-------~~~~ 159 (257)
T 3tos_A 95 EPYNPLRRIVGFDTFTGFPDVN------DVDRVGPTA--YQGRFAVPGGYPAYLKEVLDAHECSDFFGH-------VTQR 159 (257)
T ss_dssp CTTCTTCCEEEEECSSCCCSCC------GGGTTSTTC--STTTTCCCTTHHHHHHHHHHHHHTTSTTTT-------SCCS
T ss_pred cccCCCCEEEEEECCCCCCCCc------ccccccccc--ccCcccccchhHHHHHHHHHHHhhhhhcCC-------CCCc
Confidence 25788888433221000 000000000 000011000000001100 1111 1356
Q ss_pred eeEEecccccccCC---CCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE
Q 016155 260 FSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 260 ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+.++.|+|.+.-.. ....++||+| |||. -.+...|++.++..|+|||++|-
T Consensus 160 i~li~G~~~dTL~~~l~~~~~~~~dlv----~ID~D~Y~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 160 SVLVEGDVRETVPRYLAENPQTVIALA----YFDLDLYEPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp EEEEESCHHHHHHHHHHHCTTCCEEEE----EECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEEecHHHHHHHHHHhCCCCceEEE----EEcCcccchHHHHHHHHHHHhCCCcEEEE
Confidence 99999999875310 0123457766 5554 34677899999999999999993
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=82.89 E-value=4.7 Score=37.62 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=29.6
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHH
Q 016155 173 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMIC 208 (394)
Q Consensus 173 ~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~~ 208 (394)
.+|.++|+|+ +.+|..|+..|+.|+..|.+..-+..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 42 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDA 42 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 5899999886 34577888899999999999987643
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=17 Score=42.07 Aligned_cols=40 Identities=15% Similarity=-0.059 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-e-EEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-I-SQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~-v~G~D~S~~ML~~s~ 210 (394)
...+|||+=||.|.+..-|.+.|+ . |.++|+....+.+.+
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~ 891 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFR 891 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHH
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHH
Confidence 567899999999999999999998 4 679999998875433
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=82.83 E-value=13 Score=34.21 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~M 205 (394)
++.+||+-|+ ++|+ ++..|+++|+.|.+++-+..-
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 47 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 5678999997 2333 355667789999999987643
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.79 E-value=10 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~~ 208 (394)
.-.+|.++|+|+ +.+|..|+..|+.|+..|.+..-+..
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~ 75 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDA 75 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 345899999997 45788999999999999999977643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.62 E-value=1.1 Score=45.34 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eL-A~~Gf~v~G~D~S~~ML~ 207 (394)
.+.+|+++|+|. |..+..+ ..+|..|++.|.+..-+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~ 227 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKE 227 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 568999999984 4444443 445999999999986553
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.60 E-value=0.79 Score=44.57 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.0
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 170 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 170 ~~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+++.+||+.| .|.|.++..+|+. |..|.+.+ +..-+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~ 220 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDAS 220 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHH
Confidence 3678999999 4679998888764 99999988 54433
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=0.68 Score=46.31 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA-~~Gf~v~G~D~S~~ML 206 (394)
.+.+|+++|+|. |+.+..++ .+|..|++.|.+..-+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~ 208 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK 208 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 467999999874 54455554 4599999999998655
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=82.12 E-value=5.1 Score=34.64 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=24.2
Q ss_pred eEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 016155 174 ACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 174 ~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~M 205 (394)
+||+.|+ |+|+ ++..|+++|+.|.+++-+..-
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence 6999995 3454 466677889999999887644
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=81.74 E-value=14 Score=35.04 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=62.6
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 173 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 173 ~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.||=++|.|. ..+|..|++.||.|++.|.+..-.. . + ..
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-------~------l-------------------~~------- 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAE-------P------L-------------------TK------- 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------C-------T------T-------------------TT-------
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHH-------H------H-------------------HH-------
Confidence 3788887775 3346677888999999998874420 0 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH-HHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE-YIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~-yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.+.. .+.+..++- ..-|+|++|.- +...+.+ +...+...+++|+++|+.+...+
T Consensus 47 -------~G~~-~~~s~~e~~------~~~dvvi~~l~--~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p--------- 101 (297)
T 4gbj_A 47 -------LGAT-VVENAIDAI------TPGGIVFSVLA--DDAAVEELFSMELVEKLGKDGVHVSMSTISP--------- 101 (297)
T ss_dssp -------TTCE-ECSSGGGGC------CTTCEEEECCS--SHHHHHHHSCHHHHHHHCTTCEEEECSCCCH---------
T ss_pred -------cCCe-EeCCHHHHH------hcCCceeeecc--chhhHHHHHHHHHHhhcCCCeEEEECCCCCh---------
Confidence 0011 112323332 34588887643 3333333 34668889999999997543211
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
-+..++.+.+.+.|...+.
T Consensus 102 ------~~~~~~~~~~~~~g~~~ld 120 (297)
T 4gbj_A 102 ------ETSRQLAQVHEWYGAHYVG 120 (297)
T ss_dssp ------HHHHHHHHHHHHTTCEEEE
T ss_pred ------HHHHHHHHHHHhcCCceec
Confidence 1345666777788888776
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.85 E-value=12 Score=34.20 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=27.7
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlG---RLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
++..||+-|++.| .++..|+++|+.|.+++-+..-+
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~ 49 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKG 49 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4668999997644 35777888899999999987654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.66 E-value=2.3 Score=41.59 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=23.9
Q ss_pred CccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEEec
Q 016155 279 AWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 279 ~fD~VvT~fFlDt-a~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
.-|+|+.+.-+.. ..+++. +.+...||||+++||.+
T Consensus 219 ~aDvV~l~~P~t~~t~~li~--~~~l~~mk~gailIN~a 255 (335)
T 2g76_A 219 LCDFITVHTPLLPSTTGLLN--DNTFAQCKKGVRVVNCA 255 (335)
T ss_dssp GCSEEEECCCCCTTTTTSBC--HHHHTTSCTTEEEEECS
T ss_pred cCCEEEEecCCCHHHHHhhC--HHHHhhCCCCcEEEECC
Confidence 4588887765542 222221 45678899999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 394 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 4e-15 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 4e-15
Identities = 31/247 (12%), Positives = 67/247 (27%), Gaps = 17/247 (6%)
Query: 144 EGKTERDQCYKPI-LEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEF 201
G P L L F + G+G L +F
Sbjct: 27 RGDLCNPNGVGPWKLRCLAQTFATGEVS-GRTLIDIGSGPTVYQLLSACSHFEDITMTDF 85
Query: 202 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFS 261
L A W++Y + + + + +
Sbjct: 86 LEVNRQELGRWLQEEPGAFNWSMY---SQHACLIEGKGECWQDKERQLRARVKRVLPIDV 142
Query: 262 MCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE----YIEIISRILKDGGVWINLGP 317
+ DA+V+ F ++ + ++ I+ +L+ GG + +G
Sbjct: 143 HQPQPL---GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199
Query: 318 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTA 377
L + G+ + +S E+V+ + G++ + T +
Sbjct: 200 LEESWYL-AGEARLTVVPVSEEEVREALVRSGYKVRD---LRTYIMPAHLQTGVDDVKGV 255
Query: 378 FWTMRKK 384
F+ +K
Sbjct: 256 FFAWAQK 262
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.82 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.79 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.77 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.76 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.74 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.74 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.74 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.69 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.69 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.66 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.6 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.58 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.57 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.54 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.48 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.48 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.47 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.45 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.42 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.41 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.36 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.36 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.33 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.32 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.23 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.22 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.12 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.12 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.1 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.1 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.09 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.03 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.03 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.0 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.92 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.92 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.83 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.83 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.83 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.8 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.77 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.74 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.74 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.73 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.69 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.66 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.64 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.59 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.59 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.5 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.49 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.44 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.43 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.38 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.38 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.33 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.3 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.28 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.25 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.2 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.16 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.13 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.05 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.04 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.02 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.01 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.99 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.95 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.9 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.86 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.62 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.4 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.37 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.17 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.09 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.97 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.9 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.48 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.2 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.0 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 95.91 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.87 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.71 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.69 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.66 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.61 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.37 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.35 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.28 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.14 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.13 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.88 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.53 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.2 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.09 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.98 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.92 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.71 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.53 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.51 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.3 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.92 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.78 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.7 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.17 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.1 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.01 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 89.58 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.49 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.37 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 89.34 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.0 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.91 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.72 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.51 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.78 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.49 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 87.01 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.74 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.91 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.9 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 84.84 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 84.76 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.72 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 83.97 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.79 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 82.74 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 82.41 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 82.11 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.68 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 81.43 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 81.27 |
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=8.2e-20 Score=168.02 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|++|+|+|+|..||..|+-.++.
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~----------------------------------- 81 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS----------------------------------- 81 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc-----------------------------------
Confidence 456899999999999999999999999999999999776632210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEE-e-cC-----c-
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWIN-L-GP-----L- 318 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f----FlDta~ni~~yl~~I~~~LKpGG~wIN-~-GP-----L- 318 (394)
.+.++.++.+|+.++.. .++||+|++.+ ++.+.+++..+|+.++++|||||++|- + .| +
T Consensus 82 -----~~~~v~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 152 (246)
T d1y8ca_ 82 -----QGLKPRLACQDISNLNI----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152 (246)
T ss_dssp -----TTCCCEEECCCGGGCCC----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTT
T ss_pred -----cCccceeeccchhhhcc----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhc
Confidence 01136889999988642 47899998753 577788899999999999999999982 1 11 0
Q ss_pred ---chh-------------hhhcc----------CCCC-C------ccccCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 016155 319 ---LYH-------------FADLY----------GQED-E------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 365 (394)
Q Consensus 319 ---lyh-------------~~~~~----------g~~~-~------~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d 365 (394)
.+. +.... .... . ...-++.+||+++++++||++++.-. .|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~---~~~~~ 229 (246)
T d1y8ca_ 153 GNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD---CYSNK 229 (246)
T ss_dssp TTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE---SSSSC
T ss_pred ccCceeecCCcEEEEEeeccCCcceeEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEe---cCCCC
Confidence 000 00000 0000 0 01135899999999999999887431 23332
Q ss_pred cccccccccceEEEEEEEc
Q 016155 366 PRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 366 ~~sm~~~~Y~~~f~va~K~ 384 (394)
+-. ..-...+|||||.
T Consensus 230 ~~~---~~s~r~~~v~kk~ 245 (246)
T d1y8ca_ 230 KVE---KFTERITYLVKLG 245 (246)
T ss_dssp BCC---TTCSEEEEEEEEC
T ss_pred CCC---CCCceEEEEEEec
Confidence 211 1113468999985
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.3e-19 Score=166.05 Aligned_cols=171 Identities=11% Similarity=0.021 Sum_probs=114.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
..+.+++.+.++++.. ++.+|||||||.||++..||++||+|+|+|+|..|+..++-..+.. |.....
T Consensus 29 ~~~~l~~~~~~~l~~~---~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~---------~~~~~~ 96 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS---------YSEEPI 96 (229)
T ss_dssp CCHHHHHHHHHHHTTC---CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC---------EEEEEC
T ss_pred CCHHHHHHHHHhcCCC---CCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc---------ccccch
Confidence 3456777787765432 5679999999999999999999999999999999996555222110 000000
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpG 309 (394)
..++.... ......++.+..+|+.++.. ...+.||+|+.+.++. ..+....|++.++++||||
T Consensus 97 ------------~~~~~~~~-~~~~~~~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 97 ------------TEIPGTKV-FKSSSGNISLYCCSIFDLPR--TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp ------------TTSTTCEE-EEETTSSEEEEESCGGGGGG--SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred ------------hcccccce-eeecCCcEEEEEcchhhccc--cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence 00000000 00123468999999998753 3468999999775543 3356789999999999999
Q ss_pred cEEEEecCcchhhhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~-~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+++.... .+.. ..+++ .+.++.+||++++.. +|++...+
T Consensus 162 G~~~l~~~---~~~~~~~~gp---p~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 162 FQYLLCVL---SYDPTKHPGP---PFYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp EEEEEEEE---ECCTTTCCCS---SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred ceEEEEEc---ccCCCCCCCC---CCCCCHHHHHHHhcC-CCEEEEEE
Confidence 99874321 1111 11122 367899999999965 78886643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=8.8e-20 Score=158.97 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=108.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+.+..+-+ .++.+|||||||+||++..||++||.|+|+|+|..||..++...+..... .
T Consensus 7 ~~~~~~~~~l~~----~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~--~----------- 69 (201)
T d1pjza_ 7 KDLQQYWSSLNV----VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI--T----------- 69 (201)
T ss_dssp HHHHHHHHHHCC----CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEE--E-----------
T ss_pred HHHHHHHHHcCC----CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccch--h-----------
Confidence 345555555422 26789999999999999999999999999999999998877443221000 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~ 311 (394)
...+... .....+.+..+|+.++.. .....||+|++.+++... .+...+++.|+++|||||+
T Consensus 70 -----------~~~~~~~---~~~~~~~~~~~d~~~l~~--~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~ 133 (201)
T d1pjza_ 70 -----------SQGDFKV---YAAPGIEIWCGDFFALTA--RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133 (201)
T ss_dssp -----------EETTEEE---EECSSSEEEEECCSSSTH--HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred -----------hhhhhhh---ccccccceeccccccccc--ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcE
Confidence 0000000 012346889999988753 235789999987654432 4577899999999999999
Q ss_pred EEEecCcchhhhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~-~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++-.. +.+.. ..++ ....++.+|+++++. .+|++...+
T Consensus 134 l~l~~---~~~~~~~~~~---p~~~~~~~el~~l~~-~~~~i~~~~ 172 (201)
T d1pjza_ 134 GLLIT---LEYDQALLEG---PPFSVPQTWLHRVMS-GNWEVTKVG 172 (201)
T ss_dssp EEEEE---ESSCSSSSSS---CCCCCCHHHHHHTSC-SSEEEEEEE
T ss_pred EEEEE---cccccccCCC---ccccCCHHHHHHHhC-CCcEEEEEE
Confidence 87421 11111 1111 135679999999884 589876543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.6e-20 Score=169.34 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=123.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhcccccc-ccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAG-EWNIYPWIHSN 231 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~-~~~i~Pfi~~~ 231 (394)
..++..+.+.+... ..++.+|||+|||+|+++..+|..|+ .|+|+|+|..|+..++-.++...... ......++...
T Consensus 35 ~~~~~~~~~~~~~~-~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 35 KFNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 34555555555432 23677999999999999999998887 69999999999987764443211100 00011111110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeE-Eeccc-ccccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHh
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSM-CGGDF-VEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRI 305 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~-~~GDf-~ely~~~~~~~~fD~VvT~fFlDta----~ni~~yl~~I~~~ 305 (394)
........++.. .....+.. ...+. .+....+...++||+|++.|.|+.. ++...++++|+++
T Consensus 114 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~ 182 (257)
T d2a14a1 114 EGNSGRWEEKEE-----------KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL 182 (257)
T ss_dssp TTCGGGHHHHHH-----------HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHH-----------HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhc
Confidence 000000000000 00000000 00000 0101113456899999998876544 5678899999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEE-EEEEc
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW-TMRKK 384 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~-va~K~ 384 (394)
|||||++|..+++....... .........++.++|+++++++||++++.+.....|... ...+...|| +|||+
T Consensus 183 LkpGG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~-----~~~~~~~~~v~arKk 256 (257)
T d2a14a1 183 LKPGGHLVTTVTLRLPSYMV-GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVT-----NAANNGVCCIVARKK 256 (257)
T ss_dssp EEEEEEEEEEEESSCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTT-----TCCCCCEEEEEEEEC
T ss_pred cCCCcEEEEEEeccccccee-ccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccc-----cCCCCcEEEEEEEeC
Confidence 99999999766654322211 001112456899999999999999999876555555432 233455666 68887
Q ss_pred C
Q 016155 385 S 385 (394)
Q Consensus 385 ~ 385 (394)
+
T Consensus 257 p 257 (257)
T d2a14a1 257 P 257 (257)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=7.1e-20 Score=172.04 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=126.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc-
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN- 231 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~- 231 (394)
..++..+.+.|+... .++.+|||+|||+|.++..++.. +.+|+|+|+|..|+..++.-++.... .+.|.+..
T Consensus 38 ~~~~~~~~~~f~~g~-~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~-----~~d~~~~~~ 111 (263)
T d2g72a1 38 PWKLRCLAQTFATGE-VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG-----AFNWSMYSQ 111 (263)
T ss_dssp HHHHHHHHHHHHTSC-SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTT-----CCCCHHHHH
T ss_pred hhHHHHHHHHcCCCC-CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcc-----cccchhhhh
Confidence 345566777665332 36789999999999997666555 55799999999999887755442211 11111100
Q ss_pred --c---CCC----CcccCccccccCCCCCCCCCCCCceeEEecccccc---cCCCCCCCCccEEEEecccCCh----hhH
Q 016155 232 --C---NSL----SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV---YSDPSQVGAWDAVVTCFFIDTA----HNI 295 (394)
Q Consensus 232 --s---n~~----~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el---y~~~~~~~~fD~VvT~fFlDta----~ni 295 (394)
+ ... ....++|. ........|.+.- ...+...++||+|++.|.|+.+ .+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~ 177 (263)
T d2g72a1 112 HACLIEGKGECWQDKERQLRA--------------RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF 177 (263)
T ss_dssp HHHHHHCSCCCHHHHHHHHHH--------------HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHH
T ss_pred hhhhhccccchhhhhHHHhhh--------------hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHH
Confidence 0 000 00000000 0123333444321 1112345789999999987655 367
Q ss_pred HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccc
Q 016155 296 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYF 375 (394)
Q Consensus 296 ~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~ 375 (394)
...|++|+++|||||+||..|++.+++... +......+.++.|+|+++++++||++++.+..... ++.......|.
T Consensus 178 ~~~l~~~~~~LkPGG~li~~~~~~~~~~~~-~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~---~~~~~~~~d~~ 253 (263)
T d2g72a1 178 QRALDHITTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMP---AHLQTGVDDVK 253 (263)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECC---GGGCCTTBCCC
T ss_pred HHHHHHHHHHcCCCCEEEEecccCCccccc-CCcccccCCCCHHHHHHHHHHCCCeEEEEEEeecc---Ccccccccccc
Confidence 788999999999999999988887665432 21112356799999999999999999885532211 11111224466
Q ss_pred eE-EEEEEE
Q 016155 376 TA-FWTMRK 383 (394)
Q Consensus 376 ~~-f~va~K 383 (394)
.. |++|||
T Consensus 254 ~~~~~~ArK 262 (263)
T d2g72a1 254 GVFFAWAQK 262 (263)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 55 558998
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=2.3e-18 Score=157.31 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=80.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
+..+|||+|||+|+++..|+++|+.|+|+|+|..||..|+..++.
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~----------------------------------- 85 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE----------------------------------- 85 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccc-----------------------------------
Confidence 567999999999999999999999999999999999877643211
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+.++.+..+|+.++.. .++||+|++.+ ..-+.+++...|++++++|||||++|-
T Consensus 86 -----~~~~i~~~~~d~~~l~~----~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 86 -----RNLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp -----TTCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----ccccchheehhhhhccc----ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 01136889999998743 36899998764 233456889999999999999999984
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.78 E-value=1e-18 Score=157.88 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=106.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..|+-.+...
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~---------------------------------- 60 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN---------------------------------- 60 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccc----------------------------------
Confidence 6789999999999999999999999999999999997766332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Cc------chh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PL------LYH 321 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PL------lyh 321 (394)
...++.++.+|+.++. +.+++||+|++...+...++....|++++++|||||+++-.. |- +|+
T Consensus 61 -----~~~~i~~~~~d~~~l~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 132 (231)
T d1vl5a_ 61 -----GHQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 132 (231)
T ss_dssp -----TCCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH
T ss_pred -----cccccccccccccccc---ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 0124789999998863 347899999999877777788899999999999999998432 11 122
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+..... .......++.+++.++++++||++++.
T Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 165 (231)
T d1vl5a_ 133 YVEKER-DYSHHRAWKKSDWLKMLEEAGFELEEL 165 (231)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred HHHhhc-ccCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 111000 111223578999999999999998863
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=4.1e-18 Score=152.22 Aligned_cols=145 Identities=22% Similarity=0.144 Sum_probs=106.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
|..-+..|....| +.+|||+|||+|+++..++ .++|+|+|..|+..++.
T Consensus 24 ~~~~~~~~~~~~~------~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~--------------------- 72 (208)
T d1vlma_ 24 YLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARK--------------------- 72 (208)
T ss_dssp HHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHH---------------------
T ss_pred HHHHHHHHHhhCC------CCeEEEECCCCcccccccc----eEEEEeCChhhcccccc---------------------
Confidence 4445566666654 3479999999999998886 46899999999865440
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.++.++.+|+.++. ..+++||+|++.+.|...+++..+|++++++|||||++
T Consensus 73 -------------------------~~~~~~~~d~~~l~---~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l 124 (208)
T d1vlma_ 73 -------------------------RGVFVLKGTAENLP---LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL 124 (208)
T ss_dssp -------------------------TTCEEEECBTTBCC---SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred -------------------------cccccccccccccc---cccccccccccccccccccccccchhhhhhcCCCCceE
Confidence 02567889988763 34689999999998888888999999999999999999
Q ss_pred EEecCcchhh-----hhc-cC-CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 INLGPLLYHF-----ADL-YG-QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN~GPLlyh~-----~~~-~g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|-..|....+ ... .. ........+|.++|.++++++||++++..
T Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 125 IVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp EEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 8544332211 110 00 01112335799999999999999988743
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=1.9e-18 Score=154.41 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=98.3
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccc
Q 016155 140 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETA 219 (394)
Q Consensus 140 DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~ 219 (394)
+|.+....+.+..+..+...|+++++ ++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..|+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--- 82 (226)
T d1ve3a1 11 TYTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--- 82 (226)
T ss_dssp TTTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccc---
Confidence 45566666766666667777777765 4579999999999999999999999999999999997776432110
Q ss_pred cccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHH
Q 016155 220 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVE 297 (394)
Q Consensus 220 ~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~ 297 (394)
+..+.++.+|+.++. ..+++||+|++.+.|.. ..++..
T Consensus 83 -------------------------------------~~~~~~~~~d~~~l~---~~~~~fD~I~~~~~l~~~~~~d~~~ 122 (226)
T d1ve3a1 83 -------------------------------------ESNVEFIVGDARKLS---FEDKTFDYVIFIDSIVHFEPLELNQ 122 (226)
T ss_dssp -------------------------------------TCCCEEEECCTTSCC---SCTTCEEEEEEESCGGGCCHHHHHH
T ss_pred -------------------------------------ccccccccccccccc---ccCcCceEEEEecchhhCChhHHHH
Confidence 011456778888863 34689999998876553 357889
Q ss_pred HHHHHHHhccCCcEEEE
Q 016155 298 YIEIISRILKDGGVWIN 314 (394)
Q Consensus 298 yl~~I~~~LKpGG~wIN 314 (394)
+|+.|+++|||||++|-
T Consensus 123 ~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 123 VFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCcEEEE
Confidence 99999999999999974
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=3e-18 Score=156.50 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=110.8
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~ 236 (394)
++.|.+..+- +++.+|||+|||+|.++..||++|++|+|+|+|..||..|+-.+.. .
T Consensus 5 ~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~---~----------------- 61 (234)
T d1xxla_ 5 LGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQE---K----------------- 61 (234)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH---H-----------------
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcc---c-----------------
Confidence 3444444442 3788999999999999999999999999999999999776633211 0
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-
Q 016155 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL- 315 (394)
Q Consensus 237 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~- 315 (394)
. -.++.++.+|+.++. +.+++||+|++++.+...+|+..+|++++++|||||+++-.
T Consensus 62 ------~-------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 62 ------G-------------VENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ------T-------------CCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------c-------------ccccccccccccccc---ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 0 023788999988753 35789999999887777778999999999999999998852
Q ss_pred -c----CcchhhhhccC--CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 316 -G----PLLYHFADLYG--QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 316 -G----PLlyh~~~~~g--~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
. |.+..+.+... ..+.....++.+++..++++.||+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~ 165 (234)
T d1xxla_ 120 HYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 165 (234)
T ss_dssp ECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeE
Confidence 1 11111111000 011123456899999999999998765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.74 E-value=2.4e-17 Score=149.75 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=105.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~----~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
|...+.++++ ++.+|||+|||+|.++..|++ .|++|+|+|+|..||..|+..+...
T Consensus 29 i~~~~~~~~~-----~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--------------- 88 (225)
T d1im8a_ 29 IGMLAERFVT-----ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--------------- 88 (225)
T ss_dssp HHHHHHHHCC-----TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS---------------
T ss_pred HHHHHHHhcC-----CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh---------------
Confidence 4444555554 567999999999999999997 4899999999999998777433210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpG 309 (394)
.....+.+..+|+.++. .+.+|+|++.+.+. ..++...+|++|+++||||
T Consensus 89 -----------------------~~~~~~~~~~~d~~~~~-----~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 140 (225)
T d1im8a_ 89 -----------------------HSEIPVEILCNDIRHVE-----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN 140 (225)
T ss_dssp -----------------------CCSSCEEEECSCTTTCC-----CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred -----------------------cccchhhhccchhhccc-----cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence 00123677888887653 36789888776443 3467889999999999999
Q ss_pred cEEEEecCcchh--------------hhhccCCCC-C----------ccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYH--------------FADLYGQED-E----------MSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh--------------~~~~~g~~~-~----------~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|++|...+.... +....+..+ + ....++.+++..+++++||+.++..
T Consensus 141 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 141 GVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp EEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEE
T ss_pred ceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEe
Confidence 999965332110 000001000 0 0124699999999999999987643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=1.6e-17 Score=148.35 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..||..++..... . .
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~---~-----------------------~------- 76 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA---E-----------------------G------- 76 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T-----------------------T-------
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh---c-----------------------c-------
Confidence 345999999999999999999999999999999999766532211 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
-.++.+..+|+.++.. +++||+|++.+.+. +.+++..+|+.++++|||||+++..... +..+...
T Consensus 77 ------~~~~~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~--~~~~~~~- 143 (198)
T d2i6ga1 77 ------LDNLQTDLVDLNTLTF----DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM--DTPDFPC- 143 (198)
T ss_dssp ------CTTEEEEECCTTTCCC----CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB--C-------
T ss_pred ------ccchhhhheecccccc----cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec--CCccCCC-
Confidence 0236778889877642 57899999765443 3356789999999999999999853211 0011000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEEEEEEcC
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKKS 385 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~-~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~ 385 (394)
.......++.+|+++++ .||+++... ........+... ......-..|||||+.
T Consensus 144 ~~~~~~~~~~~el~~~~--~~~~i~~~~e~~~~~~~~~~~~-~~~~~~~~~~varK~a 198 (198)
T d2i6ga1 144 TVGFPFAFKEGELRRYY--EGWDMLKYNEDVGELHRTDENG-NRIKLRFATMLARKTA 198 (198)
T ss_dssp ---CCCCBCTTHHHHHT--TTSEEEEEEEEECCC-------------EEEEEEEECCC
T ss_pred CCCCCCccCHHHHHHHh--CCCeEEEeeeccceeeecCCCC-cEeeEEEEEEEEEeCC
Confidence 00112456778898887 589988632 221112221111 1123445667999973
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=152.06 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=103.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..|++.++ .|+|+|+|..||..|+-.+...
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~--------------------------------- 106 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------------- 106 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccc---------------------------------
Confidence 567999999999999999876665 7999999999998776332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...+++|.++|+.++.. ..++||+|++.+.+... +++.++++.|+++|||||++|...+..-.... ..
T Consensus 107 ------~~~~~~f~~~d~~~~~~---~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-~~ 176 (222)
T d2ex4a1 107 ------GKRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-LD 176 (222)
T ss_dssp ------GGGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-EE
T ss_pred ------ccccccccccccccccc---ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-cc
Confidence 01236899999998642 46899999988766544 34678999999999999999964332111000 00
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.....+..+.++++++++++||++++.+
T Consensus 177 -~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 177 -DVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp -TTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -cCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 0112445699999999999999999865
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=2.4e-17 Score=154.90 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=111.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+++.|....+.. ++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-..+..
T Consensus 54 ~~~~~l~~~~~l~---~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 113 (282)
T d2o57a1 54 WLASELAMTGVLQ---RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----------------- 113 (282)
T ss_dssp HHHHHHHHTTCCC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhcCCC---CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc-----------------
Confidence 3556666554432 6789999999999999999987 899999999999997666332210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.+..+|+.++. +..++||+|++..-+...++..++|++++++|||||+++
T Consensus 114 ---------------------gl~~~v~~~~~d~~~l~---~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 114 ---------------------GLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp ---------------------TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------ccccccccccccccccc---ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence 11235889999998863 346899999988666556678899999999999999998
Q ss_pred EecCcchh---------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh---------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-..+..-. +.+... ..-..+.+++.+++++.||+.++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 170 ITDPMKEDGIDKSSIQPILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEEEECTTCCGGGGHHHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeecCCCCchhHHHHHHHHhc----cCCCCCHHHHHHHHHHcCCceEEEE
Confidence 54332110 000000 0113488999999999999988744
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.72 E-value=1.7e-17 Score=151.25 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=109.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++..+...+ ++.+|||+|||+|+++..|+++|++|+|+|+|..|+..++-.+
T Consensus 10 ~~~~~~~~~~------~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~--------------------- 62 (225)
T d2p7ia1 10 FMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL--------------------- 62 (225)
T ss_dssp HHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS---------------------
T ss_pred HHHHHhhhhC------CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc---------------------
Confidence 3455555554 4568999999999999999999999999999999997655110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH-HhccCCcEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGGVWI 313 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~-~~LKpGG~wI 313 (394)
..++.++.+|+.++.. +++||+|++...|...+|..+.|++++ ++|||||+++
T Consensus 63 ----------------------~~~~~~~~~~~~~~~~----~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 63 ----------------------KDGITYIHSRFEDAQL----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp ----------------------CSCEEEEESCGGGCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEE
T ss_pred ----------------------cccccccccccccccc----ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEE
Confidence 1237788999887643 478999998888887788999999998 8999999998
Q ss_pred EecCcchhhhhc----cC----CC--------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYHFADL----YG----QE--------DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh~~~~----~g----~~--------~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-.-|-.+.+... .+ .. ......++.++++++++++||++++.+
T Consensus 117 i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 117 LVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp EEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 533321111000 00 00 011235799999999999999998855
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.69 E-value=1.2e-16 Score=149.39 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=102.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+..+|||+|||+||++..|+.+++ .|+|+|.|..||..|+-.+..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~---------------------------------- 138 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc----------------------------------
Confidence 567999999999999999887765 699999999999776622110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++++..+|+.++.. ..++||+|++...+... +++.++|++++++|||||++|...++...-....+
T Consensus 139 -------~~~~~~~~~d~~~~~~---~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d 208 (254)
T d1xtpa_ 139 -------MPVGKFILASMETATL---PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------cccceeEEcccccccc---CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec
Confidence 1136788999888642 46899999988765543 45779999999999999999853332111000000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
....++..+.++++++++++||++++.+
T Consensus 209 -~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred -ccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 1113566799999999999999999865
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.1e-16 Score=147.22 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=111.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
-++.|.+.+.-. ++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.. .+.
T Consensus 21 ~~~~l~~~~~l~---pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~---~~~--------------- 79 (245)
T d1nkva_ 21 KYATLGRVLRMK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA---EEL--------------- 79 (245)
T ss_dssp HHHHHHHHTCCC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHH---HHT---------------
T ss_pred HHHHHHHHcCCC---CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHH---HHh---------------
Confidence 455566665432 6789999999999999999886 899999999999997665221 100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..+|+.++.. +++||+|++..-+....|...++++++++|||||++|-
T Consensus 80 --------------------gl~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i 135 (245)
T d1nkva_ 80 --------------------GVSERVHFIHNDAAGYVA----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI 135 (245)
T ss_dssp --------------------TCTTTEEEEESCCTTCCC----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred --------------------hccccchhhhhHHhhccc----cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEE
Confidence 122458899999988632 58899999987777777888999999999999999985
Q ss_pred ecCcchh------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 315 LGPLLYH------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 315 ~GPLlyh------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
..|.... ...... .....-.++..++..++++.||+++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aG~~~v~~ 181 (245)
T d1nkva_ 136 GEPYWRQLPATEEIAQACG-VSSTSDFLTLPGLVGAFDDLGYDVVEM 181 (245)
T ss_dssp EEEEETTCCSSHHHHHTTT-CSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EeccccCCCChHHHHHHhc-cCCCcccCCHHHHHHHHHHcCCEEEEE
Confidence 3322111 000000 011122568999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=4.4e-17 Score=147.17 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=82.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+...|.++.+ ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..|+-- ..
T Consensus 32 ~~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~---~~------------------ 85 (246)
T d2avna1 32 IGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK---GV------------------ 85 (246)
T ss_dssp HHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH---TC------------------
T ss_pred HHHHHHHhcC-----CCCEEEEECCCCchhcccccccceEEEEeecccccccccccc---cc------------------
Confidence 3344555554 466999999999999999999999999999999999765510 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
-.++.+|+.++. +.+++||+|++.+ ++...+|..+.|++|+++|||||++|-
T Consensus 86 ------------------------~~~~~~~~~~l~---~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 86 ------------------------KNVVEAKAEDLP---FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp ------------------------SCEEECCTTSCC---SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------------cccccccccccc---cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence 123567777752 3468999999875 555566788999999999999999984
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.67 E-value=4.7e-16 Score=143.85 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..+++.|+ .|+|+|+|..||..|+...+..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--------------------------------- 70 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 70 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 5999999999997665322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc----cCChhhHHHHHHHHHHhccCCcEEEEecCc-------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF----IDTAHNIVEYIEIISRILKDGGVWINLGPL------- 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF----lDta~ni~~yl~~I~~~LKpGG~wIN~GPL------- 318 (394)
....++.+.++|+..... ...++||+|++.+. +++.+++..+|++++++|||||++|-.-|-
T Consensus 71 -----~~~~~v~f~~~D~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~ 143 (252)
T d1ri5a_ 71 -----KRRFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 143 (252)
T ss_dssp -----CCSSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCcceEEEEcchhhhcc--cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHH
Confidence 012247889999865432 13578999988763 456677889999999999999999842111
Q ss_pred ---------chhh--hhcc-----CC-----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 ---------LYHF--ADLY-----GQ-----------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 ---------lyh~--~~~~-----g~-----------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|.. .... +. ......-+..+.++++++++||+++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~ 208 (252)
T d1ri5a_ 144 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 208 (252)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhcccCCceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 0110 0000 00 0000113478999999999999998764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.1e-15 Score=144.24 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=88.8
Q ss_pred HHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 132 CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 132 ~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
..-..+..+|.......++ .+++.|... +..+|||+|||+|+++..||++|+.|+|+|+|..||..|+-
T Consensus 28 ~~~~~~~~~~~~r~~~~~~----~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~ 96 (292)
T d1xvaa_ 28 RVWQLYIGDTRSRTAEYKA----WLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALK 96 (292)
T ss_dssp HHHHHHHHTTCCBCHHHHH----HHHHHHHHT-------TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcchhhhHHHHHH----HHHHHhhhc-------CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHH
Confidence 3445677777665554444 244444432 45699999999999999999999999999999999977653
Q ss_pred hhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----
Q 016155 212 ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---- 287 (394)
Q Consensus 212 iln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---- 287 (394)
....... ... .....+..+||..+.......++||+|++.+
T Consensus 97 ~~~~~~~--~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~ 141 (292)
T d1xvaa_ 97 ERWNRRK--EPA---------------------------------FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFA 141 (292)
T ss_dssp HHHHTTT--SHH---------------------------------HHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGG
T ss_pred HHHhccc--ccc---------------------------------cceeeeeeccccccccccCCCCCceEEEEecCchh
Confidence 2211100 000 0012344455543321001247899998753
Q ss_pred ccC----ChhhHHHHHHHHHHhccCCcEEE
Q 016155 288 FID----TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 288 FlD----ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
++. ...++..+|++++++|||||++|
T Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 142 HLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp GSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred hcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 332 24568889999999999999998
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=1.9e-15 Score=142.67 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
.+++|.+.+... .++.+|||+|||+|.++..||.. |..|+|+|+|..|+..|+.....
T Consensus 14 ~l~~l~~~~~~~--~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~----------------- 74 (281)
T d2gh1a1 14 YVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----------------- 74 (281)
T ss_dssp HHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHhcc--CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc-----------------
Confidence 566666544322 26789999999999999999985 78999999999999776632210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.+.++.|..+|+.++.. .++||+|++...+...+|....|+.++++|||||++
T Consensus 75 -----------------------~~~~~~f~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l 127 (281)
T d2gh1a1 75 -----------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI 127 (281)
T ss_dssp -----------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred -----------------------ccccccccccccccccc----cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEE
Confidence 01237889999887632 367999999998888888999999999999999999
Q ss_pred EEecCc
Q 016155 313 INLGPL 318 (394)
Q Consensus 313 IN~GPL 318 (394)
|.+.|.
T Consensus 128 ii~~~~ 133 (281)
T d2gh1a1 128 ICFEPH 133 (281)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 976553
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.9e-15 Score=142.36 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
-+++.|.+... ++.+|||+|||+|.++..++++|.+|+|+|+|..|+..|+..... +
T Consensus 109 l~l~~l~~~~~-----~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~----n-------------- 165 (254)
T d2nxca1 109 LALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N-------------- 165 (254)
T ss_dssp HHHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T--------------
T ss_pred HHHHHHHhhcC-----ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHH----c--------------
Confidence 46777777643 677999999999999999999999999999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+ +..+..+|+.+... .++||+|+++.+.+ .+.++++.+.++|||||++|-
T Consensus 166 --------~~--------------~~~~~~~d~~~~~~----~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 166 --------GV--------------RPRFLEGSLEAALP----FGPFDLLVANLYAE---LHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp --------TC--------------CCEEEESCHHHHGG----GCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEE
T ss_pred --------CC--------------ceeEEecccccccc----ccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEE
Confidence 00 14567888776542 47899999876543 466889999999999999996
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-|.+ .-..+++++.+++.||++++..
T Consensus 217 Sgil----------------~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 217 TGIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred Eecc----------------hhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1135789999999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=7.6e-15 Score=139.58 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|.++..+|++ |..|+|+|+|..|+..++-... +.
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~---~~------------------------------ 98 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA---SI------------------------------ 98 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---TS------------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHH---hh------------------------------
Confidence 6889999999999999999977 9999999999999976653221 10
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEe--c---Cc----
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINL--G---PL---- 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~--G---PL---- 318 (394)
.....+.+...|+.++ .++||.|++.-.+... +|...||++|+++|||||+++-- . |.
T Consensus 99 -----~l~~~~~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~ 167 (280)
T d2fk8a1 99 -----DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAA 167 (280)
T ss_dssp -----CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHT
T ss_pred -----ccccchhhhhhhhhhh------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhh
Confidence 0112356677776654 3789999988655543 67889999999999999999741 1 10
Q ss_pred ---chhhhhc----c---CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 319 ---LYHFADL----Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 319 ---lyh~~~~----~---g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
.+.+... + -.-| ...-.|.+++.+++++.||+++..+.+
T Consensus 168 ~~~~~~~~~~~~~dfI~kyifP-gg~lPS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 168 RGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp TCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred cccccccccccccchhhhhccC-CCcccchHhhhhhHHhhccccceeeec
Confidence 0011000 0 0001 123469999999999999999875543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.57 E-value=4.7e-14 Score=130.80 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=103.6
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+.|.+.++-. ...+|||+|||+|.++..|+++ +-.++++|++ .|+..++-.+.. .
T Consensus 70 ~~~~~~~d~~---~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~---~---------------- 126 (253)
T d1tw3a2 70 DAPAAAYDWT---NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKD---E---------------- 126 (253)
T ss_dssp HHHHHHSCCT---TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHH---T----------------
T ss_pred HHHHhhcCCc---cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHH---h----------------
Confidence 4444555532 5579999999999999999999 4678899985 577555422110 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wI 313 (394)
....+++++.|||++.. ...||+|+..+.|.. .++..+.|++++++|||||+++
T Consensus 127 -------------------~~~~rv~~~~~D~~~~~-----~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 127 -------------------GLSDRVDVVEGDFFEPL-----PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL 182 (253)
T ss_dssp -------------------TCTTTEEEEECCTTSCC-----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred -------------------hcccchhhccccchhhc-----ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEE
Confidence 11245899999997632 257999998876543 3456789999999999999988
Q ss_pred EecCcchh---------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccc
Q 016155 314 NLGPLLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIET 360 (394)
Q Consensus 314 N~GPLlyh---------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~ 360 (394)
-.....-. ..+..-.......+.|.+|++++++++||++++...+..
T Consensus 183 i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 183 IHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp EEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred EEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 53221100 000000000012356999999999999999988665443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=6.9e-14 Score=133.47 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=109.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.|-+.+.. .++.+|||+|||.|.++..+|+. |..|+|+.+|..++..++-... +.
T Consensus 50 k~~~~~~~l~l---~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~---~~--------------- 108 (285)
T d1kpga_ 50 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVA---NS--------------- 108 (285)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---TC---------------
T ss_pred HHHHHHHHcCC---CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHH---hh---------------
Confidence 44555554442 37889999999999999998766 9999999999999876653221 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~w 312 (394)
...+++.+..+|+.++ +++||.|++.-.+... .|...|++.|+++|||||++
T Consensus 109 --------------------g~~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~ 162 (285)
T d1kpga_ 109 --------------------ENLRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 162 (285)
T ss_dssp --------------------CCCSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------hhhhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence 1123478888998765 3689999998665554 67789999999999999999
Q ss_pred EE--ec---Ccch-------hhh--hc--c---CCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 313 IN--LG---PLLY-------HFA--DL--Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 313 IN--~G---PLly-------h~~--~~--~---g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+. ++ |... ++. .. + ..-| .+.-.|.+++..++++.||+++....+..-|
T Consensus 163 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp-gg~lPsl~~~~~~~e~agf~v~~~~~~~~hY 230 (285)
T d1kpga_ 163 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP-GGRLPSIPMVQECASANGFTVTRVQSLQPHY 230 (285)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred EEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc-CCCCCChhhHHHHHHHhchhhcccccchhhH
Confidence 73 22 1110 000 00 0 0001 1223589999999999999999876544333
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=5e-14 Score=130.44 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=112.4
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn 214 (394)
-+|-|... |. .+-..|..-+......++.+|||+|||+|..+..||+.+ -.|+|+|+|..|+..++..
T Consensus 48 e~r~w~p~----rs----klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~-- 117 (230)
T d1g8sa_ 48 EYRIWNPN----KS----KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA-- 117 (230)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH--
T ss_pred eeeeECCC----cc----HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH--
Confidence 47888854 22 455666554433333478999999999999999999985 4799999999999654422
Q ss_pred ccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh
Q 016155 215 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 294 (394)
Q Consensus 215 ~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n 294 (394)
+.+ ..++..+.+|...... .....+|+++.+..+....+
T Consensus 118 -a~~--------------------------------------~~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~ 156 (230)
T d1g8sa_ 118 -CAE--------------------------------------RENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQ 156 (230)
T ss_dssp -TTT--------------------------------------CTTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTH
T ss_pred -Hhh--------------------------------------hcccceEEEeeccCcc--cccccceeEEeeccccchHH
Confidence 111 0124445566554332 12356676655544555567
Q ss_pred HHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCccccccccc
Q 016155 295 IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRY 374 (394)
Q Consensus 295 i~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y 374 (394)
...+++++++.|||||+++-. .+....+.. . ......+++++.|++.||++++... ..+|-.| ..|.-..|
T Consensus 157 ~~~~l~~~~r~LKpgG~~~i~---~k~~~~d~~-~---~~~~~~~e~~~~L~~aGF~ive~id-L~py~~~-H~~vvg~y 227 (230)
T d1g8sa_ 157 AEILIKNAKWFLKKGGYGMIA---IKARSIDVT-K---DPKEIFKEQKEILEAGGFKIVDEVD-IEPFEKD-HVMFVGIW 227 (230)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE---EEGGGTCSS-S---CHHHHHHHHHHHHHHHTEEEEEEEE-CTTTSTT-EEEEEEEE
T ss_pred HHHHHHHHHHhcccCceEEEE---eeccccCCC-C---CHHHHHHHHHHHHHHcCCEEEEEec-CCCCcCC-eEEEEEEe
Confidence 788999999999999998842 111111101 1 1233567888999999999987653 3355443 33333333
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=1.9e-13 Score=130.75 Aligned_cols=147 Identities=11% Similarity=0.005 Sum_probs=102.4
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|.++..+|+ .|..|+|+++|..++..++-.... .
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~---~------------------------------ 107 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE---V------------------------------ 107 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH---S------------------------------
T ss_pred CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHh---h------------------------------
Confidence 788999999999999999985 599999999999998766533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---------hhHHHHHHHHHHhccCCcEEEE--ec--
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---------HNIVEYIEIISRILKDGGVWIN--LG-- 316 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta---------~ni~~yl~~I~~~LKpGG~wIN--~G-- 316 (394)
.....+.+...|+.. .+++||.|++.-.+... +|...||+.|+++|||||+++. ++
T Consensus 108 -----~l~~~v~~~~~d~~~------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 108 -----DSPRRKEVRIQGWEE------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp -----CCSSCEEEEECCGGG------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred -----ccchhhhhhhhcccc------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 111235667777643 25789999988544332 5788999999999999999984 21
Q ss_pred CcchhhhhccC---------------CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 317 PLLYHFADLYG---------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 317 PLlyh~~~~~g---------------~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
.-.|.++.... .-| ...-.|..++..++++.||+++..+.+..-|
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~fi~kyiFp-gg~lps~~~~~~~~e~~gl~v~~~~~~~~hY 236 (291)
T d1kpia_ 177 DKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 236 (291)
T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CcchhhhccCCCchhhcccchHHHHHhcC-CCCCCCHHHHHhhhcccccccceeeeccccH
Confidence 11122110000 001 1234589999999999999999877655545
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.4e-14 Score=129.31 Aligned_cols=153 Identities=16% Similarity=0.022 Sum_probs=99.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
|+.+.|.+.... ++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++.....
T Consensus 41 ~~~~~la~~~~~----~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~------------------ 98 (229)
T d1zx0a1 41 PYMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------------------ 98 (229)
T ss_dssp HHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG------------------
T ss_pred HHHHHHHHhhcc----CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh------------------
Confidence 577777665532 57799999999999999999976 6899999999999877632210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEE-----EecccCChhhHHHHHHHHHHhccC
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV-----TCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv-----T~fFlDta~ni~~yl~~I~~~LKp 308 (394)
...++.+..+|+.++.. +...++||.|+ ..+-+....+...++++++++|||
T Consensus 99 ----------------------~~~~~~~~~~~~~~~~~-~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp 155 (229)
T d1zx0a1 99 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 155 (229)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------ccccccccccccccccc-ccccccccceeecccccccccccccCHHHHHHHHHHHcCC
Confidence 01124556666655432 23468899886 223355667788999999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
||+|+-+.+..+.. ......+ .......+.+...+.++||+.+.
T Consensus 156 GG~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 156 GGVLTYCNLTSWGE-LMKSKYS-DITIMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp EEEEEECCHHHHHH-HTTTTCS-CHHHHHHHHTHHHHHHTTCCGGG
T ss_pred CcEEEEEecCCcch-hhhhhhh-hcchhhhhHHHHHHHHCCCeeEE
Confidence 99998533221110 0000000 01123345666677789997644
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.7e-14 Score=129.38 Aligned_cols=148 Identities=14% Similarity=0.195 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
+..+|||+|||+|.++..|+.. +..++|+|.|..|+..++--+... .
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~------~------------------- 94 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI------S------------------- 94 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC------C-------------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc------c-------------------
Confidence 4558999999999998887654 346899999999997655221100 0
Q ss_pred ccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec--C
Q 016155 243 PVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG--P 317 (394)
Q Consensus 243 ~v~iPDv~p~~~~~~~~ls~~~GDf~ely---~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G--P 317 (394)
.++ .-.+.+...++.++. ..+...++||+|++.+.|...+++..+|+.++++|||||+++-.. +
T Consensus 95 --~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 95 --NLE---------NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp --SCT---------TEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred --ccc---------cccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 000 011344454443321 112356899999999888777788999999999999999886421 1
Q ss_pred c-----chh-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 318 L-----LYH-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 318 L-----lyh-~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
- +|. +...+. .+...-.++.+++.++|.+.||..+..
T Consensus 164 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 164 SSGWDKLWKKYGSRFP-QDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp TSHHHHHHHHHGGGSC-CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred cchHHHHHHHHHHhcC-CCcccccCCHHHHHHHHHHCCCceEEE
Confidence 1 111 111111 111233578999999999999987663
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.47 E-value=6.6e-13 Score=123.80 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=98.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..|+++ +-.++++|+ ..|+..++-.+...
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-------------------------------- 127 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 127 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--------------------------------
Confidence 4568999999999999999999 678999998 56776555322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 325 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~- 325 (394)
...+++.++.+||.+-. ...||+|+..+.|.. .++....|++|+++|||||++|-+.++.......
T Consensus 128 ------~~~~ri~~~~~d~~~~~-----p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~ 196 (256)
T d1qzza2 128 ------GLADRVTVAEGDFFKPL-----PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 196 (256)
T ss_dssp ------TCTTTEEEEECCTTSCC-----SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCcceeeeeeeeccccc-----cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc
Confidence 11234889999987621 246999998776643 3556789999999999999988654432110000
Q ss_pred ------cCC---CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 326 ------YGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 326 ------~g~---~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+. ......+.|.+|++++++++||++++...
T Consensus 197 ~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 197 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence 000 00013457999999999999999998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.9e-13 Score=128.11 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
.+++.|...+|. ++.+|||+|||+|.++..|++++ ..++|+|+|..|+..++...
T Consensus 72 ~~~~~l~~~~~~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------- 128 (268)
T d1p91a_ 72 AIVAQLRERLDD----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------- 128 (268)
T ss_dssp HHHHHHHHHSCT----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhcCC----CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------------------
Confidence 366667777664 56799999999999999999995 57899999999996554110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.++.+..+|+.++. +.+++||+|++.+-+.. +++++|+|||||++
T Consensus 129 -------------------------~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l 173 (268)
T d1p91a_ 129 -------------------------PQVTFCVASSHRLP---FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWV 173 (268)
T ss_dssp -------------------------TTSEEEECCTTSCS---BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEE
T ss_pred -------------------------ccccceeeehhhcc---CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEE
Confidence 12678899988763 45789999988765443 57899999999999
Q ss_pred EEecC
Q 016155 313 INLGP 317 (394)
Q Consensus 313 IN~GP 317 (394)
|-..|
T Consensus 174 ~~~~p 178 (268)
T d1p91a_ 174 ITATP 178 (268)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 96544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.45 E-value=5.2e-13 Score=118.32 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++.+||+.+..|+|+|+|..|+..++.-+.. +
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~----~------------------------------ 78 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR----H------------------------------ 78 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHH----c------------------------------
Confidence 678999999999999999999999999999999999777632211 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 330 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~ 330 (394)
...+++.++.||+.+... ..+.||+|+.. ....++.++++.+.+.|||||+++-..+.. +
T Consensus 79 ----gl~~~v~~~~gda~~~~~---~~~~~D~v~~~---~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~---e------- 138 (186)
T d1l3ia_ 79 ----GLGDNVTLMEGDAPEALC---KIPDIDIAVVG---GSGGELQEILRIIKDKLKPGGRIIVTAILL---E------- 138 (186)
T ss_dssp ----TCCTTEEEEESCHHHHHT---TSCCEEEEEES---CCTTCHHHHHHHHHHTEEEEEEEEEEECBH---H-------
T ss_pred ----CCCcceEEEECchhhccc---ccCCcCEEEEe---CccccchHHHHHHHHHhCcCCEEEEEeecc---c-------
Confidence 112358899999988753 35789999864 344567899999999999999987422110 0
Q ss_pred CccccCCHHHHHHHHHhCCCEEE
Q 016155 331 EMSIELSLEDVKRVALHYGFEFE 353 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii 353 (394)
+..++.+.+.+.||...
T Consensus 139 ------~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 139 ------TKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ------HHHHHHHHHHHTTCCCE
T ss_pred ------cHHHHHHHHHHcCCCeE
Confidence 33456677888888544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.42 E-value=8.4e-13 Score=123.84 Aligned_cols=172 Identities=15% Similarity=-0.013 Sum_probs=106.4
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccc
Q 016155 151 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227 (394)
Q Consensus 151 ~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf 227 (394)
..|+.=+..+-.... -+++.+|||.|||+|.++..||+. | -.|+++|++..|+..|+--+...
T Consensus 68 iiypkD~~~Ii~~l~---i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~----------- 133 (250)
T d1yb2a1 68 IISEIDASYIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF----------- 133 (250)
T ss_dssp -------------CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----------
T ss_pred ccCHHHHHHHHHHcC---CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----------
Confidence 345444455544433 237889999999999999999986 3 48999999999997666322110
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 228 i~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
....++.+..+|+.+... ++.||+|+. |. ++..++|+.++++||
T Consensus 134 ---------------------------~~~~nv~~~~~Di~~~~~----~~~fD~V~l----d~-p~p~~~l~~~~~~LK 177 (250)
T d1yb2a1 134 ---------------------------YDIGNVRTSRSDIADFIS----DQMYDAVIA----DI-PDPWNHVQKIASMMK 177 (250)
T ss_dssp ---------------------------SCCTTEEEECSCTTTCCC----SCCEEEEEE----CC-SCGGGSHHHHHHTEE
T ss_pred ---------------------------cCCCceEEEEeeeecccc----cceeeeeee----cC-CchHHHHHHHHHhcC
Confidence 011347889999887642 578999964 32 345578999999999
Q ss_pred CCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccCCCCcccc----cccccceEEE-EE
Q 016155 308 DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTTNPRSM----MQNRYFTAFW-TM 381 (394)
Q Consensus 308 pGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y~~d~~sm----~~~~Y~~~f~-va 381 (394)
|||+++.+.|.. + ..+++.+.+++.||..++ .+.+...|....+.+ .....+ -|. +|
T Consensus 178 pGG~lv~~~P~i---~-------------Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~~~~RP~~~mvgHT-gfl~~a 240 (250)
T d1yb2a1 178 PGSVATFYLPNF---D-------------QSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASDDLTHT-AFITFA 240 (250)
T ss_dssp EEEEEEEEESSH---H-------------HHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTCCCCGGGGSCEE-EEEEEE
T ss_pred CCceEEEEeCCc---C-------------hHHHHHHHHHHCCCceeEEEEEEeEEEEEcCCccCCCCCCccch-hhhhhh
Confidence 999999765531 0 134555666778998776 344444554332221 111222 345 89
Q ss_pred EEcCcccc
Q 016155 382 RKKSVTIV 389 (394)
Q Consensus 382 ~K~~~~~~ 389 (394)
||++..|-
T Consensus 241 rK~~g~~~ 248 (250)
T d1yb2a1 241 IKKSGMVY 248 (250)
T ss_dssp EECCSCEE
T ss_pred cccCCCcc
Confidence 99877653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=1.2e-12 Score=116.62 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=78.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..++..++. + .+.
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~----~----------------------~l~----- 100 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL----N----------------------NLD----- 100 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH----T----------------------TCT-----
T ss_pred CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHH----h----------------------CCc-----
Confidence 577999999999999999999999999999999999877643221 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-HHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n-i~~yl~~I~~~LKpGG~wIN 314 (394)
..++.+..+|+.+.. .+++||+|++..-+....+ +..+++.+.++|||||+++-
T Consensus 101 ------~~~i~~~~~d~~~~~----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 101 ------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp ------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cceEEEEEcchhhhh----ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence 123788999987632 3579999998743333334 56799999999999998763
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=1.2e-12 Score=125.25 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|..+.+.+.. +
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~-----n----------------------------- 78 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKA-----N----------------------------- 78 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHH-----T-----------------------------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHH-----h-----------------------------
Confidence 456899999999999999999995 79999999866544332210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++.++.||+.++.. ..++||+|++.. ++.....+..++..+.++|||||++|
T Consensus 79 -----~~~~~v~~~~~~~~~~~~---~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 79 -----KLDHVVTIIKGKVEEVEL---PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -----TCTTTEEEEESCTTTCCC---SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCccccceEeccHHHccc---ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 112347889999988643 358899999864 34555568889999999999999998
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.1e-12 Score=122.92 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|+.+.+.+.+.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~---------------------------------- 80 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN---------------------------------- 80 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh----------------------------------
Confidence 467899999999999999999996 799999999997655533211
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.+|+.++.. ..++||+|++.. ++.....+..++....++|||||++|
T Consensus 81 -----~~~~~i~~~~~~~~~l~~---~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 81 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCccceEEEeeHHHhcC---ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 012347889999988743 358999999853 44444456678888899999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=3.7e-12 Score=122.27 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhcccccccccccc
Q 016155 148 ERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYP 226 (394)
Q Consensus 148 ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P 226 (394)
.|...|...|..-...+ ++.+|||+|||+|.|+..+|++|. .|+|+|.|. |+..++.+... +
T Consensus 21 ~r~~~y~~aI~~~~~~~------~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~----~------ 83 (328)
T d1g6q1_ 21 VRTLSYRNAIIQNKDLF------KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL----N------ 83 (328)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHH----T------
T ss_pred HHHHHHHHHHHhccccC------CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHH----h------
Confidence 34445555443323333 467999999999999999999996 799999996 55444422211 0
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHH
Q 016155 227 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIIS 303 (394)
Q Consensus 227 fi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~ 303 (394)
....++.++.+|+.++.. ..++||+|++.. ++.....+...+..+.
T Consensus 84 ----------------------------~~~~~i~~i~~~~~~l~~---~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~ 132 (328)
T d1g6q1_ 84 ----------------------------GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARD 132 (328)
T ss_dssp ----------------------------TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHH
T ss_pred ----------------------------CccccceEEEeehhhccC---cccceeEEEEEecceeeccchhHHHHHHHHH
Confidence 112347889999988743 358999999853 4566666888999999
Q ss_pred HhccCCcEEE
Q 016155 304 RILKDGGVWI 313 (394)
Q Consensus 304 ~~LKpGG~wI 313 (394)
++|||||+.|
T Consensus 133 r~LkpgG~ii 142 (328)
T d1g6q1_ 133 HYLVEGGLIF 142 (328)
T ss_dssp HHEEEEEEEE
T ss_pred hccCCCeEEE
Confidence 9999999997
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=8.6e-12 Score=117.62 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=114.9
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccc
Q 016155 150 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP 226 (394)
Q Consensus 150 ~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P 226 (394)
+..|++-+..|-..+.- +++.+|||+|||+|.++..||+. +-.|+|+|+|..|+..|+-.+...
T Consensus 85 qiiypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~---------- 151 (266)
T d1o54a_ 85 QIVYPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW---------- 151 (266)
T ss_dssp CCCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT----------
T ss_pred cccchHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh----------
Confidence 67888888888887653 37899999999999999999986 248999999999998776433211
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 016155 227 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 227 fi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~L 306 (394)
...+++.+..+|+.+-+ ....||.|+ +|. +++.++|+.+.++|
T Consensus 152 ----------------------------g~~~~v~~~~~d~~~~~----~~~~~D~V~----~d~-p~p~~~l~~~~~~L 194 (266)
T d1o54a_ 152 ----------------------------GLIERVTIKVRDISEGF----DEKDVDALF----LDV-PDPWNYIDKCWEAL 194 (266)
T ss_dssp ----------------------------TCGGGEEEECCCGGGCC----SCCSEEEEE----ECC-SCGGGTHHHHHHHE
T ss_pred ----------------------------ccccCcEEEeccccccc----cccceeeeE----ecC-CCHHHHHHHHHhhc
Confidence 01123566777765433 246788874 444 45778999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccCCCCc-----ccccccccceEEE-
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTTNP-----RSMMQNRYFTAFW- 379 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y~~d~-----~sm~~~~Y~~~f~- 379 (394)
||||+++.+-|..- ..+++.+.+++.||..++ .+.+...|-..+ ...+. . ..-|.
T Consensus 195 KpGG~lv~~~P~~~----------------Qv~~~~~~l~~~gF~~i~~~E~l~R~~~~~~~~vRP~~~~v-g-HTgfl~ 256 (266)
T d1o54a_ 195 KGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVWESLFRPYKPVPERLRPVDRMV-A-HTAYMI 256 (266)
T ss_dssp EEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEECCCCCCEECCTTSCEECSCCC-C-CSCEEE
T ss_pred CCCCEEEEEeCccc----------------HHHHHHHHHHHCCceeEEEEEEEEEEEEecCCccCCCCCCc-c-hHHHHH
Confidence 99999997655321 235677788889998776 333443443332 22221 1 23355
Q ss_pred EEEEcCc
Q 016155 380 TMRKKSV 386 (394)
Q Consensus 380 va~K~~~ 386 (394)
+|||-..
T Consensus 257 ~ark~~~ 263 (266)
T d1o54a_ 257 FATKVCR 263 (266)
T ss_dssp EEEECSC
T ss_pred Hheeccc
Confidence 6888653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.26 E-value=5.3e-11 Score=108.06 Aligned_cols=102 Identities=15% Similarity=0.023 Sum_probs=69.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 170 ESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
+++.+|||+|||+|.++..||+. | -.|+|+|+|..|+..++...+ +
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~---~----------------------------- 102 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR---E----------------------------- 102 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH---H-----------------------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh---c-----------------------------
Confidence 37889999999999999999986 2 379999999999976552211 1
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|.......+.....+|+|+.. +....+...++++++++|||||+++-
T Consensus 103 ---------~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 103 ---------RNNIIPLLFDASKPWKYSGIVEKVDLIYQD--IAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp ---------CSSEEEECSCTTCGGGTTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------cCCceEEEeeccCccccccccceEEEEEec--ccChhhHHHHHHHHHHHhccCCeEEE
Confidence 013666777766543221122334443322 22334567889999999999999985
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.4e-10 Score=106.81 Aligned_cols=178 Identities=19% Similarity=0.126 Sum_probs=104.7
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~fil 213 (394)
-+|-|... |. .+-..|..-+.....+++.+|||+|||+|.++..||+. | -.|+|+|+|..|+..++...
T Consensus 47 e~R~w~p~----rS----Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a 118 (227)
T d1g8aa_ 47 EYRIWNPN----RS----KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118 (227)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH
T ss_pred eEEEECCC----cc----HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH
Confidence 48889753 32 34455554443333447899999999999999999987 3 58999999999996554222
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ 293 (394)
+ .. .++..+.+|.......+.....+|+|+..+. ...
T Consensus 119 ~---~~--------------------------------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~--~~~ 155 (227)
T d1g8aa_ 119 E---ER--------------------------------------RNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPT 155 (227)
T ss_dssp S---SC--------------------------------------TTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STT
T ss_pred H---hc--------------------------------------CCceEEEEECCCcccccccccceEEEEEEcc--ccc
Confidence 1 10 1133444554432221223467887764332 234
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccc
Q 016155 294 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNR 373 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~ 373 (394)
+....++.+++.|||||+++-. ++ ....+... .-+--..++.+++ +.||++++.-. ..+|-.
T Consensus 156 ~~~~~l~~~~~~LkpgG~lvi~---~k--a~~~~~~~--~~~~v~~~v~~l~-~~gf~iie~i~-L~p~~~--------- 217 (227)
T d1g8aa_ 156 QAKILIDNAEVYLKRGGYGMIA---VK--SRSIDVTK--EPEQVFREVEREL-SEYFEVIERLN-LEPYEK--------- 217 (227)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EE--GGGTCTTS--CHHHHHHHHHHHH-HTTSEEEEEEE-CTTTSS---------
T ss_pred hHHHHHHHHHHhcccCCeEEEE---EE--CCccCCCC--CHHHHHHHHHHHH-HcCCEEEEEEc-CCCCCC---------
Confidence 5667899999999999999842 11 11100000 0011224555555 55999986543 334432
Q ss_pred cceEEEEEEEc
Q 016155 374 YFTAFWTMRKK 384 (394)
Q Consensus 374 Y~~~f~va~K~ 384 (394)
+-..+|+||.
T Consensus 218 -~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 -DHALFVVRKT 227 (227)
T ss_dssp -SEEEEEEECC
T ss_pred -ceEEEEEEeC
Confidence 1245678874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=1.8e-11 Score=115.62 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=96.0
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTE 217 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~ 217 (394)
|...-+..-+..|++-+..|.....- +++.+|||.|||+|.++..||+. | -.|+++|++..|+..|+--+....
T Consensus 69 ~~~~~~r~tqiiypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~ 145 (264)
T d1i9ga_ 69 YVMSMPRGPQVIYPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 145 (264)
T ss_dssp HHTTSCSCSCCCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHhhccCCccccchHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc
Confidence 44333334467899999998887753 37889999999999999999987 3 489999999999987763221100
Q ss_pred cccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH
Q 016155 218 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE 297 (394)
Q Consensus 218 ~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~ 297 (394)
. ....++.+..+|+.+.. ..++.||+|+ +|. ++..+
T Consensus 146 ~------------------------------------~~~~nv~~~~~d~~~~~---~~~~~fDaV~----ldl-p~P~~ 181 (264)
T d1i9ga_ 146 G------------------------------------QPPDNWRLVVSDLADSE---LPDGSVDRAV----LDM-LAPWE 181 (264)
T ss_dssp T------------------------------------SCCTTEEEECSCGGGCC---CCTTCEEEEE----EES-SCGGG
T ss_pred c------------------------------------CCCceEEEEeccccccc---ccCCCcceEE----Eec-CCHHH
Confidence 0 01235788999988753 3468999985 443 45668
Q ss_pred HHHHHHHhccCCcEEEEecC
Q 016155 298 YIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 298 yl~~I~~~LKpGG~wIN~GP 317 (394)
+++.++++|||||+|+-+-|
T Consensus 182 ~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 182 VLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHhccCCCCEEEEEeC
Confidence 99999999999999997555
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.12 E-value=1.2e-10 Score=105.51 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=86.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..|||+|||+|+.+..||++. ..++|+|+|..|+..+.-... +.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~---~~----------------------------- 76 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK---DS----------------------------- 76 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HS-----------------------------
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHH---HH-----------------------------
Confidence 35689999999999999999994 789999999999965442111 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--h----H--HHHHHHHHHhccCCcEEEEecCcch
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--N----I--VEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~--n----i--~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
...|+.++.||+.++.. -...+++|.|...|-..-.. . + .++|+.++++|||||.+.-..
T Consensus 77 -------~l~Nv~~~~~Da~~l~~-~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T---- 144 (204)
T d2fcaa1 77 -------EAQNVKLLNIDADTLTD-VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---- 144 (204)
T ss_dssp -------CCSSEEEECCCGGGHHH-HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE----
T ss_pred -------hccCchhcccchhhhhc-ccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE----
Confidence 01358899999877642 12468899987655322111 1 0 379999999999999986310
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 321 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 321 h~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
| ... =.+.+.+++.+.||....
T Consensus 145 ---D--------~~~-y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 145 ---D--------NRG-LFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp ---S--------CHH-HHHHHHHHHHHHTCEEEE
T ss_pred ---C--------ChH-HHHHHHHHHHHCCCcccc
Confidence 1 001 125566677777776554
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=1.3e-10 Score=105.47 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=79.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
+.++..+.+.+.- +++.+|||+|||+|.++..||++ | -.|+++|++..|+..|+..+....
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~------------- 124 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG------------- 124 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-------------
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-------------
Confidence 3445555555432 37889999999999999999986 3 479999999999987774442210
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
-.++.+..+|..+.+. ..++||+|+..+-+...+ +.+.+.|||||
T Consensus 125 --------------------------~~n~~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG 169 (213)
T d1dl5a1 125 --------------------------IENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGG 169 (213)
T ss_dssp --------------------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEE
T ss_pred --------------------------ccccccccCchHHccc---cccchhhhhhhccHHHhH------HHHHHhcCCCc
Confidence 1236778889877543 357899999887666543 35678899999
Q ss_pred EEEE
Q 016155 311 VWIN 314 (394)
Q Consensus 311 ~wIN 314 (394)
++|-
T Consensus 170 ~lv~ 173 (213)
T d1dl5a1 170 RVIV 173 (213)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1e-10 Score=112.73 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+..+-+.+.. .++.+|||+|||+|+++..+|+. |. .|+|+|+|..|+..|+-.++.....- ..
T Consensus 139 ~~~~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~--~~--------- 204 (328)
T d1nw3a_ 139 LVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM--KW--------- 204 (328)
T ss_dssp HHHHHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHh--hh---------
Confidence 44444444432 26779999999999999999876 66 69999999999988776554321100 00
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCc--cEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAW--DAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~f--D~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
. .+ ...++.+..|||.++.. .+..| |+|+...++ ..+++...|.++++.|||||+
T Consensus 205 -----~---g~-----------~~~~i~~~~gd~~~~~~---~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~ 261 (328)
T d1nw3a_ 205 -----Y---GK-----------KHAEYTLERGDFLSEEW---RERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGR 261 (328)
T ss_dssp -----H---TC-----------CCCCEEEEECCTTSHHH---HHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCE
T ss_pred -----c---cc-----------cCCceEEEECccccccc---ccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcE
Confidence 0 00 01248999999987532 23345 455543333 235788999999999999999
Q ss_pred EEEecC
Q 016155 312 WINLGP 317 (394)
Q Consensus 312 wIN~GP 317 (394)
+|..-+
T Consensus 262 iv~~~~ 267 (328)
T d1nw3a_ 262 IVSSKP 267 (328)
T ss_dssp EEESSC
T ss_pred EEEecc
Confidence 996443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.1e-10 Score=113.01 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=87.6
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhcccccccccccc
Q 016155 150 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYP 226 (394)
Q Consensus 150 ~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P 226 (394)
+..|++=+..+...+.- +++.+|||.|||.|.++..||+. | -.|+++|++..|+..|+--+...... ..
T Consensus 80 qiiypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~--~~--- 151 (324)
T d2b25a1 80 AITFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS--WK--- 151 (324)
T ss_dssp CCCCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH--HT---
T ss_pred cccccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh--hh---
Confidence 55777777776666543 37889999999999999999986 3 37999999999998776433211000 00
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 016155 227 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 227 fi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~L 306 (394)
+... ....+++.+..+|+.+... ......||+|+ ||. ++.-++|+.++++|
T Consensus 152 -------------------~~~~----~~~~~nv~~~~~di~~~~~-~~~~~~fD~V~----LD~-p~P~~~l~~~~~~L 202 (324)
T d2b25a1 152 -------------------LSHV----EEWPDNVDFIHKDISGATE-DIKSLTFDAVA----LDM-LNPHVTLPVFYPHL 202 (324)
T ss_dssp -------------------TTCS----SCCCCCEEEEESCTTCCC--------EEEEE----ECS-SSTTTTHHHHGGGE
T ss_pred -------------------hhhh----hccccceeEEecchhhccc-ccCCCCcceEe----ecC-cCHHHHHHHHHHhc
Confidence 0000 0123568999999876542 12357899985 454 34557899999999
Q ss_pred cCCcEEEEecC
Q 016155 307 KDGGVWINLGP 317 (394)
Q Consensus 307 KpGG~wIN~GP 317 (394)
||||+++-+-|
T Consensus 203 KpGG~lv~~~P 213 (324)
T d2b25a1 203 KHGGVCAVYVV 213 (324)
T ss_dssp EEEEEEEEEES
T ss_pred cCCCEEEEEeC
Confidence 99999996544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1e-10 Score=107.18 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
+.+...+.+.+... .+++.+||++|||+|+++..||++ ...|+|+|.+..|+..|+..+....-.
T Consensus 60 P~~~a~~le~L~~~-l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~----------- 127 (224)
T d1i1na_ 60 PHMHAYALELLFDQ-LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT----------- 127 (224)
T ss_dssp HHHHHHHHHHTTTT-SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-----------
T ss_pred hHHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-----------
Confidence 33444454444211 136789999999999999999986 468999999999998777544321000
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
.+. ..++.+..||..+.+. ..+.||+|+...-++..+ +.+.+.|||||
T Consensus 128 ------------~~~-----------~~~~~~~~gD~~~~~~---~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG 175 (224)
T d1i1na_ 128 ------------LLS-----------SGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAPVVP------QALIDQLKPGG 175 (224)
T ss_dssp ------------HHH-----------TSSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEE
T ss_pred ------------ccc-----------ccceEEEEeecccccc---hhhhhhhhhhhcchhhcC------HHHHhhcCCCc
Confidence 000 1236788899877543 357899999877666543 35788999999
Q ss_pred EEEE
Q 016155 311 VWIN 314 (394)
Q Consensus 311 ~wIN 314 (394)
++|-
T Consensus 176 ~LV~ 179 (224)
T d1i1na_ 176 RLIL 179 (224)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.03 E-value=6.8e-10 Score=102.06 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+...+.+.+.- +++.+||++|||+|+++..||+++..|+++|.+..++..|+-.+..
T Consensus 56 p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~------------------ 114 (224)
T d1vbfa_ 56 LNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY------------------ 114 (224)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT------------------
T ss_pred hhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc------------------
Confidence 3344444444432 3678999999999999999999999999999999999766532210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.+..||....+. ..+.||+|+...-++..+ +.+.+.|||||++|
T Consensus 115 -----------------------~~nv~~~~~d~~~g~~---~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV 162 (224)
T d1vbfa_ 115 -----------------------YNNIKLILGDGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMI 162 (224)
T ss_dssp -----------------------CSSEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEE
T ss_pred -----------------------ccccccccCchhhcch---hhhhHHHHHhhcchhhhh------HHHHHhcCCCCEEE
Confidence 1247889999776543 357899998665555433 45668899999998
Q ss_pred E
Q 016155 314 N 314 (394)
Q Consensus 314 N 314 (394)
-
T Consensus 163 ~ 163 (224)
T d1vbfa_ 163 L 163 (224)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.03 E-value=9.9e-10 Score=99.38 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..|||+|||+|.++..+|+. ...+.|+|+|..|+..+. +.+.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~---~~~~~~----------------------------- 78 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL---DKVLEV----------------------------- 78 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH---HHHHHH-----------------------------
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH---Hhhhhh-----------------------------
Confidence 4568999999999999999998 578999999999986443 111110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---------HHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n---------i~~yl~~I~~~LKpGG~wI 313 (394)
.-.|+.++.+|+.++.. -...+++|.|+. +|.|.-+- -.++|+.++++|||||.++
T Consensus 79 -------~l~Ni~~~~~da~~l~~-~~~~~~~~~i~i-~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 79 -------GVPNIKLLWVDGSDLTD-YFEDGEIDRLYL-NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp -------CCSSEEEEECCSSCGGG-TSCTTCCSEEEE-ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred -------ccccceeeecCHHHHhh-hccCCceehhcc-cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 01258899999887643 134688998864 44543111 0479999999999999986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=9.2e-10 Score=103.07 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++|. .|+|+|+|..++..++--+.. +
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~----n----------------------------- 153 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 153 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHH----h-----------------------------
Confidence 577999999999999999999995 899999999998655421110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
...+++.++.||+.++.. .+.||.|+. +..+.-.++++...++|||||++. .|.+...
T Consensus 154 -----~l~~~v~~~~~D~~~~~~----~~~~D~Ii~----~~p~~~~~~l~~a~~~l~~gG~lh-----~~~~~~~---- 211 (260)
T d2frna1 154 -----KVEDRMSAYNMDNRDFPG----ENIADRILM----GYVVRTHEFIPKALSIAKDGAIIH-----YHNTVPE---- 211 (260)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEE----CCCSSGGGGHHHHHHHEEEEEEEE-----EEEEEEG----
T ss_pred -----CCCceEEEEEcchHHhcc----CCCCCEEEE----CCCCchHHHHHHHHhhcCCCCEEE-----EEecccc----
Confidence 112347889999988643 478998874 333344578888999999999763 1222211
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
........+.+.++....||++...
T Consensus 212 -~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 212 -KLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -GGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -ccchhhHHHHHHHHHHHcCCceEEE
Confidence 0112345677888999999998653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=5.8e-09 Score=98.52 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=93.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++........ ++.+|||+|||+|-++..||..- ..|+|+|+|..++..|+.-.+..
T Consensus 97 lv~~~l~~~~~----~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~----------------- 155 (274)
T d2b3ta1 97 LVEQALARLPE----QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL----------------- 155 (274)
T ss_dssp HHHHHHHHSCS----SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-----------------
T ss_pred hhhhHhhhhcc----cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh-----------------
Confidence 44444444432 56789999999999999998874 68999999999998777332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCCh--------------------
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTA-------------------- 292 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta-------------------- 292 (394)
. -.++.++.+|+.+-.. .++||+||++ =||.+.
T Consensus 156 ---------------------~-~~~v~~~~~d~~~~~~----~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g 209 (274)
T d2b3ta1 156 ---------------------A-IKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA 209 (274)
T ss_dssp ---------------------T-CCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH
T ss_pred ---------------------C-cccceeeecccccccC----CCceeEEEecchhhhhhhhcccccccccchhhhcccc
Confidence 0 0237889999877432 4689999998 243321
Q ss_pred ----hhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 293 ----HNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 293 ----~ni~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.-+.+.++...++|+|||.++- +|+ -..+.+.+++++.||..++
T Consensus 210 ~dGl~~~~~i~~~a~~~L~~~G~l~lEig~------------------~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 210 DSGMADIVHIIEQSRNALVSGGFLLLEHGW------------------QQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp HHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------------SCHHHHHHHHHHTTCTTCC
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEEECc------------------hHHHHHHHHHHHCCCCeEE
Confidence 1234567777889999999984 221 1357889999999997554
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.3e-09 Score=108.27 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..+|+. |. .|+|+|+|..|+..|+......... ...+ ...
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~--~~~~-----------------g~~--- 273 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR--CKLY-----------------GMR--- 273 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH--HHHT-----------------TBC---
T ss_pred CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh--hhhh-----------------ccc---
Confidence 6789999999999999999977 65 7999999999998887554322110 0000 000
Q ss_pred CCCCCCCCCCceeE-EecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 249 IHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 249 v~p~~~~~~~~ls~-~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
...+.+ ..++|.+.......-...|+|+..-++- .+++...|+++++.|||||++|-..+
T Consensus 274 --------~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f-~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 274 --------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp --------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred --------cccceeeeeechhhccccccccccceEEEEecccC-chHHHHHHHHHHHhcCCCcEEEEecc
Confidence 001111 3455543211000113457776543432 35688999999999999999997443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.83 E-value=2.3e-09 Score=91.99 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=75.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
|.+.|...+ ++.+|||+|||+|.++.+.+.+|. .|+++|.+..++..++.-+...
T Consensus 5 ~fn~l~~~~------~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~------------------ 60 (152)
T d2esra1 5 IFNMIGPYF------NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT------------------ 60 (152)
T ss_dssp HHHHHCSCC------CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHhhC------CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc------------------
Confidence 455555433 577999999999999999999997 7999999999986554222100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHH--HhccCC
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIIS--RILKDG 309 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta---~ni~~yl~~I~--~~LKpG 309 (394)
...+++.++.+|..++.. ...++||+| |+|.+ ......++.|. ++|+||
T Consensus 61 --------------------~~~~~~~ii~~D~~~~l~--~~~~~fDiI----f~DPPy~~~~~~~~l~~i~~~~~L~~~ 114 (152)
T d2esra1 61 --------------------KAENRFTLLKMEAERAID--CLTGRFDLV----FLDPPYAKETIVATIEALAAKNLLSEQ 114 (152)
T ss_dssp --------------------TCGGGEEEECSCHHHHHH--HBCSCEEEE----EECCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred --------------------ccccchhhhccccccccc--cccccccee----EechhhccchHHHHHHHHHHCCCcCCC
Confidence 012347889999877432 235789998 45643 22345566664 569999
Q ss_pred cEEE
Q 016155 310 GVWI 313 (394)
Q Consensus 310 G~wI 313 (394)
|+.|
T Consensus 115 g~ii 118 (152)
T d2esra1 115 VMVV 118 (152)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=4e-09 Score=96.61 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
++.+||++|||+|.++.-||+. +.+|+++|.+..|+..|+..++.....
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~----------------------- 136 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS----------------------- 136 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-----------------------
Confidence 6789999999999999888876 358999999999998776544321000
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 243 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 243 ~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
... ..++.+..||..+.+. ..+.||+|+...-++..++ .+.+.|||||++|-
T Consensus 137 ~~~-----------~~nv~~~~~d~~~~~~---~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 137 MLD-----------SGQLLIVEGDGRKGYP---PNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIV 188 (223)
T ss_dssp HHH-----------HTSEEEEESCGGGCCG---GGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEE
T ss_pred hcC-----------ccEEEEEecccccccc---cccceeeEEEEeechhchH------HHHHhcCCCcEEEE
Confidence 000 1247889999887653 3578999988776666542 46789999999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=8.6e-09 Score=98.88 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+++|+|..++..++.-+.. +
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~----n----------------------------- 191 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 191 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999986 799999999999766522110 0
Q ss_pred CCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe--cccCChh-------hHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTAH-------NIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~--fFlDta~-------ni~~yl~~I~~~LKpGG~wIN 314 (394)
....+++++.||+.+... .+...++||+|+.- .|..... +..+.+....++|||||++|-
T Consensus 192 -----gl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 192 -----GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 011247889999876421 01235789999964 4544432 234467778899999999984
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=4.6e-09 Score=91.97 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
+.+.|...++ ++.+|||+|||+|.++.+.+.+|..|+++|.|..|+..++.
T Consensus 31 lf~~l~~~~~-----~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~ 81 (171)
T d1ws6a1 31 LFDYLRLRYP-----RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE 81 (171)
T ss_dssp HHHHHHHHCT-----TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred HHHHhhcccc-----CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhH
Confidence 3344454444 56799999999999999999999999999999999976663
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=9.2e-08 Score=85.65 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||+|.++.+++.+|. .|+|+|+|..++..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~ 86 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI 86 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH
Confidence 578999999999999999999996 7999999999997666
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=2.4e-08 Score=90.95 Aligned_cols=96 Identities=19% Similarity=0.066 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+||++|||+|.++..||++ |-.|+++|....|+..|+-.+...
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~--------------------------------- 124 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA--------------------------------- 124 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHc---------------------------------
Confidence 6789999999999999999987 878999999999998777544321
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...|+.+..||..+-.. ..+.||+|+...-++..+ ..+.+.|||||++|-
T Consensus 125 ------g~~nv~~~~gd~~~g~~---~~~pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 125 ------GVKNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 174 (215)
T ss_dssp ------TCCSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred ------CCceeEEEECccccCCc---ccCcceeEEeecccccCC------HHHHHhcCCCCEEEE
Confidence 01347889999877543 368899998766555543 235678999999985
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.74 E-value=3.3e-08 Score=91.39 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=95.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..+.|.+.++..+ ...+|||+|||+|.++..|+++ +-.++..|+-. ++ ..+
T Consensus 68 ~~~~l~~~~~~f~--~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~----------------- 120 (244)
T d1fp1d2 68 EMKRMLEIYTGFE--GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENA----------------- 120 (244)
T ss_dssp HHHHHHHHCCTTT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC-----------------
T ss_pred HHHHHHHhccccc--CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hcc-----------------
Confidence 3445555565321 5579999999999999999998 56788888743 21 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~ 311 (394)
....+++++.|||++-. | ..|+|+....|. ..++....|+.+++.|+|||.
T Consensus 121 ---------------------~~~~ri~~~~gd~~~~~--p----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~ 173 (244)
T d1fp1d2 121 ---------------------PPLSGIEHVGGDMFASV--P----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 173 (244)
T ss_dssp ---------------------CCCTTEEEEECCTTTCC--C----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ---------------------CCCCCeEEecCCccccc--c----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 01134889999997632 2 349888665443 445677899999999999999
Q ss_pred EEEecCcch------h------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLY------H------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLly------h------~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|-...++- . .-+..-.......+.|.+|++++++++||+.++..
T Consensus 174 llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 174 VIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp EEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence 885322110 0 00000000001235689999999999999988753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=1.2e-08 Score=97.79 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||++||+|.++..+|+.|..|+++|+|..||..++..+.. + .+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------gl------ 192 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------GL------ 192 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------TC------
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHH----c----------------------CC------
Confidence 467999999999999999998889999999999999776633211 0 00
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~--fFlDta-------~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.++.++.+|..++.. .+...++||+|+.- .|.... ....+.+....++|||||++|-
T Consensus 193 -------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~ 259 (318)
T d1wxxa2 193 -------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 259 (318)
T ss_dssp -------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 136788888876421 01235789999864 232222 2233567788899999999984
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=7.3e-08 Score=88.50 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=92.1
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..+...++.. ....+|||+|||.|.++.+|+++ +-.+++.|+... + ..+
T Consensus 70 ~~~~~~~~~~--~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~------------------- 120 (243)
T d1kyza2 70 KKILETYTGF--EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDA------------------- 120 (243)
T ss_dssp HHHHHHCCTT--SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTC-------------------
T ss_pred HHHHHhcccc--cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhc-------------------
Confidence 3344445432 14568999999999999999998 678888888541 1 000
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.+||.+-. | .+ |+++.. +.....++....|+++++.|||||.++
T Consensus 121 -------------------~~~~r~~~~~~d~~~~~--P--~a--d~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~l 175 (243)
T d1kyza2 121 -------------------PSYPGVEHVGGDMFVSI--P--KA--DAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVI 175 (243)
T ss_dssp -------------------CCCTTEEEEECCTTTCC--C--CC--SCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEE
T ss_pred -------------------ccCCceEEecccccccC--C--Cc--ceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEE
Confidence 01134889999997632 2 22 433322 234455667889999999999999887
Q ss_pred EecCcchh------------hhhccC-CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYH------------FADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh------------~~~~~g-~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-..+++-. +-+..- .-.....+.|.+|++++++++||+.++..
T Consensus 176 i~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 176 VAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp EEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 54332110 000000 00001346789999999999999998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.66 E-value=1.8e-08 Score=90.77 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~ 210 (394)
.+.+|||+|||+|.|+..++.+|. .|+|+|++..++..++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar 88 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHH
Confidence 578999999999999999999997 5999999999997665
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=9.1e-08 Score=86.61 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCC
Q 016155 128 DKVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFS 202 (394)
Q Consensus 128 ~kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S 202 (394)
+.|-.++.++++ +|.-.-.+|.-+ ++..|-+.. ++.+||++|||+|.-+..||+. |-.|+++|.+
T Consensus 21 ~~vl~~~~~~~~~~~~~m~i~~~~G~----lL~~lv~~~------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~ 90 (214)
T d2cl5a1 21 QSVLEAIDTYCTQKEWAMNVGDAKGQ----IMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMN 90 (214)
T ss_dssp HHHHHHHHHHHHHTCCCCSCHHHHHH----HHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHH----HHHHHHHhh------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEecc
Confidence 556667777654 576544444432 566555543 4569999999999999999975 6799999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCC
Q 016155 203 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGA 279 (394)
Q Consensus 203 ~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~ 279 (394)
..|+..++..+..+ ...+++.++.||..++... ....+.
T Consensus 91 ~~~~~~a~~~~~~~--------------------------------------gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 91 PDYAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp HHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred HHHHHHHHHHHHHc--------------------------------------CCCccceeeeccccccccchhhcccccc
Confidence 99997776443321 1123478899998875321 112467
Q ss_pred ccEEEEecccCChhh---HHHHHHHHHHhccCCcEEEEecCcch
Q 016155 280 WDAVVTCFFIDTAHN---IVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 280 fD~VvT~fFlDta~n---i~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
||+| |||..++ ...++....++|||||++| +.-.+|
T Consensus 133 ~D~i----fiD~~~~~~~~~~~l~~~~~lLkpGGvIv-~Ddvl~ 171 (214)
T d2cl5a1 133 LDMV----FLDHWKDRYLPDTLLLEKCGLLRKGTVLL-ADNVIV 171 (214)
T ss_dssp EEEE----EECSCGGGHHHHHHHHHHTTCEEEEEEEE-ESCCCC
T ss_pred ccee----eecccccccccHHHHHHHhCccCCCcEEE-EeCcCC
Confidence 8877 5675543 2335777788999999877 333444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.59 E-value=4e-08 Score=87.39 Aligned_cols=133 Identities=10% Similarity=0.072 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHhhhhhcccccccc-cccccc-ccccCCCCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEW-NIYPWI-HSNCNSLSDS 238 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~-~i~Pfi-~~~sn~~~~~ 238 (394)
++.+||..|||+|.-++.||.. .+.++|.|+|..+|..|+--. -..... .+-|-. ..+-......
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~---y~~~~~~~~~~~~~~~yf~~~~~~ 100 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI---YRLSELKTLSPQQLQRYFMRGTGP 100 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE---EEGGGGTTSCHHHHHHHEEECCTT
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc---ccHHHHhhhhHHHHhhceeecCCC
Confidence 5679999999999988777643 246999999999997766211 000000 000000 0000000000
Q ss_pred cCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 239 DQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 239 ~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
.+ .. +.+.+ .....+.+...+..+... ...+.||+|++.+.|. +.+...+.++.++++|||||+++ +|
T Consensus 101 ~~---~~-~~~~~---~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~-lG 170 (193)
T d1af7a2 101 HE---GL-VRVRQ---ELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF-AG 170 (193)
T ss_dssp SC---SE-EEECH---HHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE-EC
T ss_pred cc---ce-eehHH---HHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEE-Ee
Confidence 00 00 00000 001124555555444221 2357899999886443 33446689999999999999987 44
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=4.1e-07 Score=83.75 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..|+++ +-+++..|+.. .+ ..+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~-------------------------------- 119 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-------ENL-------------------------------- 119 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC--------------------------------
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-------HhC--------------------------------
Confidence 3468999999999999999999 68899999853 21 110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC---cEEEEecCcc----
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG---GVWINLGPLL---- 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpG---G~wIN~GPLl---- 319 (394)
...++++++.|||.+- . ..+|+++....|. ..++..+.|+.+++.|+|| |+++-+..++
T Consensus 120 ------~~~~rv~~~~gD~f~~--~----p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~ 187 (244)
T d1fp2a2 120 ------SGSNNLTYVGGDMFTS--I----PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 187 (244)
T ss_dssp ------CCBTTEEEEECCTTTC--C----CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred ------cccCceEEEecCcccC--C----CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCC
Confidence 1124589999999762 1 2469988766554 4455778999999999998 5555332211
Q ss_pred -----hhh---hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 320 -----YHF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 320 -----yh~---~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+ -+..- .-....+.|.+|++++++++||+.++..
T Consensus 188 ~~~~~~~~~~~~dl~m-~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 188 DENQVTQIKLLMDVNM-ACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp SCHHHHHHHHHHHHHG-GGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CCchHHHHHHHHHHHH-HhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 000 00000 0001246699999999999999998854
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.3e-07 Score=81.60 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+|||++||+|.++.|.+.+|. .|+++|.+..++...+.-++..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~--------------------------------- 89 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL--------------------------------- 89 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT---------------------------------
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc---------------------------------
Confidence 356899999999999999999998 5999999999986555222110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHH--HhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIIS--RILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta---~ni~~yl~~I~--~~LKpGG~wI 313 (394)
...+..++.+|.+++.. ....+||+|+. |.+ ....+.++.+. ++|+|+|+.|
T Consensus 90 ------~~~~~~ii~~d~~~~l~--~~~~~fDlIf~----DPPY~~~~~~~~l~~l~~~~~L~~~~iIi 146 (183)
T d2fpoa1 90 ------KAGNARVVNSNAMSFLA--QKGTPHNIVFV----DPPFRRGLLEETINLLEDNGWLADEALIY 146 (183)
T ss_dssp ------TCCSEEEECSCHHHHHS--SCCCCEEEEEE----CCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------cccceeeeeeccccccc--ccccccCEEEE----cCccccchHHHHHHHHHHCCCCCCCeEEE
Confidence 01235677888777543 23578999854 432 12445566665 4699999887
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.9e-07 Score=83.79 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..|-+.. +..+||++|||+|.-+..+|.. +-.++.+|.+..+...|+..+..+
T Consensus 49 ~lL~~L~~~~------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--------------- 107 (219)
T d2avda1 49 QLLANLARLI------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--------------- 107 (219)
T ss_dssp HHHHHHHHHT------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHcc------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc---------------
Confidence 4666666654 5679999999999999999875 558999999999988777554322
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCC-hhhHHHHHHHHHHhcc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILK 307 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDt-a~ni~~yl~~I~~~LK 307 (394)
...+.+.+..||+.+.... ....++||.| |+|. ..+..+|++.+.++|+
T Consensus 108 -----------------------g~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i----fiD~dk~~y~~~~~~~~~lL~ 160 (219)
T d2avda1 108 -----------------------EAEHKIDLRLKPALETLDELLAAGEAGTFDVA----VVDADKENCSAYYERCLQLLR 160 (219)
T ss_dssp -----------------------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE----EECSCSTTHHHHHHHHHHHEE
T ss_pred -----------------------CccceEEEEEeehhhcchhhhhhcccCCccEE----EEeCCHHHHHHHHHHHHHHhc
Confidence 1123478899998764210 1235789998 5563 4567899999999999
Q ss_pred CCcEEEEecCcchh
Q 016155 308 DGGVWINLGPLLYH 321 (394)
Q Consensus 308 pGG~wIN~GPLlyh 321 (394)
|||++|- ...+|+
T Consensus 161 ~GGvii~-Dn~l~~ 173 (219)
T d2avda1 161 PGGILAV-LRVLWR 173 (219)
T ss_dssp EEEEEEE-ECCSGG
T ss_pred CCcEEEE-eCCccc
Confidence 9999994 334443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=2.4e-07 Score=82.73 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=84.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++++-+.+.. .++..|||.+||+|.++..|+++ +..|.|+|.+..|+..++..++.
T Consensus 11 ll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~------------------ 69 (192)
T d1m6ya2 11 MVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE------------------ 69 (192)
T ss_dssp THHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG------------------
T ss_pred HHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc------------------
Confidence 34444444432 26789999999999999999886 56899999999999877754421
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CCCCCCccEEEE-----ecccCCh----hhHHHHHHHH
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVT-----CFFIDTA----HNIVEYIEII 302 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~~~~~~fD~VvT-----~fFlDta----~ni~~yl~~I 302 (394)
.+.++.++.++|.++... ....++||.|+- .+-||.+ .++.+.+..+
T Consensus 70 ----------------------~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a 127 (192)
T d1m6ya2 70 ----------------------FSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKA 127 (192)
T ss_dssp ----------------------GTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHG
T ss_pred ----------------------ccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHH
Confidence 113478888888775311 122478998863 2334433 4466789999
Q ss_pred HHhccCCcEEEEecCcchhh
Q 016155 303 SRILKDGGVWINLGPLLYHF 322 (394)
Q Consensus 303 ~~~LKpGG~wIN~GPLlyh~ 322 (394)
+++|||||.++. +.||.
T Consensus 128 ~~~Lk~gG~l~i---i~f~s 144 (192)
T d1m6ya2 128 EDLLNPGGRIVV---ISFHS 144 (192)
T ss_dssp GGGEEEEEEEEE---EESSH
T ss_pred HHhcCCCCeeee---ecccc
Confidence 999999999985 34553
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.43 E-value=1.2e-06 Score=82.64 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc----C---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----G---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 243 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~ 243 (394)
++.+|||||||+|.+...++.+ + ..++|+|++..|+..|+..+...
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~--------------------------- 169 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------- 169 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---------------------------
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh---------------------------
Confidence 5678999999999998887642 3 26889999999997766332110
Q ss_pred cccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc-C--------------ChhhH-HHHHHHHHHh
Q 016155 244 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI-D--------------TAHNI-VEYIEIISRI 305 (394)
Q Consensus 244 v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFl-D--------------ta~ni-~~yl~~I~~~ 305 (394)
..+..+..+|+.... ..++||+||+. |-. . ...+. .-+++.+.+.
T Consensus 170 -------------~~~~~~~~~d~~~~~----~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~ 232 (328)
T d2f8la1 170 -------------RQKMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 232 (328)
T ss_dssp -------------TCCCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred -------------hhhhhhhcccccccc----ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence 011345566655432 24789999988 311 0 01111 2368889999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec-cccCCCCcccccccccceEEEEEEEc
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i-~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
|||||+.+-+-|--+- . .-+.+.+++.|.+. |.++..-.. ...+. + ....+..||.+|+
T Consensus 233 Lk~~G~~~~I~p~~~l-~-----------~~~~~~lR~~L~~~-~~i~~ii~lp~~~F~-~------~~~~t~ilvl~K~ 292 (328)
T d2f8la1 233 TKPGGYLFFLVPDAMF-G-----------TSDFAKVDKFIKKN-GHIEGIIKLPETLFK-S------EQARKSILILEKA 292 (328)
T ss_dssp EEEEEEEEEEEEGGGG-G-----------STTHHHHHHHHHHH-EEEEEEEECCGGGSC-C-------CCCEEEEEEEEC
T ss_pred cCCCCceEEEecCccc-c-----------CchhHHHHHHHHhC-CcEEEEEECCccccC-C------CCCCeEEEEEECC
Confidence 9999998876564321 1 12567788877665 455553221 22221 1 2335567778876
Q ss_pred C
Q 016155 385 S 385 (394)
Q Consensus 385 ~ 385 (394)
.
T Consensus 293 ~ 293 (328)
T d2f8la1 293 D 293 (328)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=4.4e-06 Score=76.93 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=37.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFI 212 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fi 212 (394)
+..+|||+|||+|-++.-||++ +..++|+|+|..++..|+..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N 104 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN 104 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH
Confidence 5679999999999999999988 78999999999999888744
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.38 E-value=3.2e-07 Score=80.90 Aligned_cols=101 Identities=21% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+|||++||+|.++.|.+.+|. .|+++|.+..++..++.-+...
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~--------------------------------- 87 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------------------------------- 87 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhh---------------------------------
Confidence 456899999999999999999998 5999999999987655322111
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~fFlDta---~ni~~yl~~I~~--~LKpGG~wI 313 (394)
....++.+..+|..++... .....+||+| |+|.+ .+..+.++.|.. +|+|||++|
T Consensus 88 -----~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI----flDPPY~~~~~~~~l~~i~~~~~L~~~giIi 148 (182)
T d2fhpa1 88 -----KEPEKFEVRKMDANRALEQFYEEKLQFDLV----LLDPPYAKQEIVSQLEKMLERQLLTNEAVIV 148 (182)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEE----EECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----hcccccccccccchhhhhhhcccCCCcceE----EechhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence 0112477888887653210 0134689988 56753 345677888764 699999887
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.33 E-value=5.9e-07 Score=85.89 Aligned_cols=134 Identities=9% Similarity=0.062 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+.||+|.++..+|..|. .|+++|.|..++..++.-++. + .+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~----n----------------------~l----- 192 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N----------------------HL----- 192 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T----------------------TC-----
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH----h----------------------cc-----
Confidence 467999999999999999999997 699999999998766532210 0 00
Q ss_pred CCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe---c-----ccCCh-hhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC---F-----FIDTA-HNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~---f-----FlDta-~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
...++.++++|..+... .....++||+|+.- | -+..+ .+..+.++...++|||||+++-..
T Consensus 193 ------~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s--- 263 (317)
T d2b78a2 193 ------DMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST--- 263 (317)
T ss_dssp ------CCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE---
T ss_pred ------cCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe---
Confidence 01247889999876421 01134689999852 2 12222 345567888899999999998411
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHH----HhCCCEEEEEe
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVA----LHYGFEFEKEK 356 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll----~~~GF~ii~e~ 356 (394)
. +-.++.+++..++ .+.|.+++...
T Consensus 264 ----c--------s~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 264 ----N--------AANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp ----C--------CTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ----C--------CccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 0 1245666665544 45677766554
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=1.7e-06 Score=82.59 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||++||+|.++..+|..|..|+++|.|..++..++-.+.. +.+
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l----n~~---------------------------- 179 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL----AGL---------------------------- 179 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH----HTC----------------------------
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh----hcc----------------------------
Confidence 567999999999999999999999999999999999776632110 000
Q ss_pred CCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cc-cCC---hhhHHH----HHHHHHHhccCCcEEEEecCcc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FF-IDT---AHNIVE----YIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fF-lDt---a~ni~~----yl~~I~~~LKpGG~wIN~GPLl 319 (394)
...++.++.+|..++... ....+.||+||.- .| ... ...+.+ .+..+..+|+|||.++-+.
T Consensus 180 -----~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t--- 251 (309)
T d2igta1 180 -----EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT--- 251 (309)
T ss_dssp -----TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE---
T ss_pred -----cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe---
Confidence 012378899998764210 0124789999853 22 211 122334 4556678999998765210
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHH----hCCCEEEE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVAL----HYGFEFEK 354 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~----~~GF~ii~ 354 (394)
- .+..++.+++..++. ..|-.+..
T Consensus 252 ~-----------~s~~~s~~~~~~~~~~~~~~ag~~v~~ 279 (309)
T d2igta1 252 A-----------YSIRASFYSMHELMRETMRGAGGVVAS 279 (309)
T ss_dssp E-----------CCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred c-----------CCCCCCHHHHHHHHHHHHHhcCCccee
Confidence 0 023456666666554 45655544
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.28 E-value=2.5e-06 Score=74.84 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHH
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYM 205 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~M 205 (394)
.|.+++-+.+... ++.+|||||||+|.+...++++ ...+.|+|++..+
T Consensus 6 ~i~~~m~~l~~~~---~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~ 56 (223)
T d2ih2a1 6 EVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA 56 (223)
T ss_dssp HHHHHHHHHCCCC---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT
T ss_pred HHHHHHHHhcCCC---CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH
Confidence 4677777776533 6779999999999998888654 4568999998755
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=1.8e-06 Score=78.93 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=85.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|-+.. +..+||++|+|+|.-+..||+. +-.++.+|.+..+...|+-..+.+
T Consensus 50 ~L~~L~~~~------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~---------------- 107 (227)
T d1susa1 50 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 107 (227)
T ss_dssp HHHHHHHHH------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh----------------
Confidence 666666553 5679999999999999999863 569999999999987777444321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC----CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD----PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 307 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~----~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LK 307 (394)
...+.+.++.||+.+.... ....++||+| |||.. .+-..|++.+.++|+
T Consensus 108 ----------------------g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i----FiDa~k~~y~~~~e~~~~ll~ 161 (227)
T d1susa1 108 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI----FVDADKDNYLNYHKRLIDLVK 161 (227)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE----EECSCSTTHHHHHHHHHHHBC
T ss_pred ----------------------ccccceeeeehHHHHHHHHHHhccccCCceeEE----EeccchhhhHHHHHHHHhhcC
Confidence 1123488899998875420 0124689988 67744 557799999999999
Q ss_pred CCcEEEEecCcchh
Q 016155 308 DGGVWINLGPLLYH 321 (394)
Q Consensus 308 pGG~wIN~GPLlyh 321 (394)
|||++|- ...+|+
T Consensus 162 ~gGiii~-DNvl~~ 174 (227)
T d1susa1 162 VGGVIGY-DNTLWN 174 (227)
T ss_dssp TTCCEEE-ETTTGG
T ss_pred CCcEEEE-ccCCCC
Confidence 9999994 334554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.20 E-value=9.2e-07 Score=82.88 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+||++|.|.|..+.++.+.+. .|+.+|++..++.+++..+...... +....
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~---------------------~~~~~---- 126 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGL---------------------LEAML---- 126 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTH---------------------HHHHH----
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccch---------------------hhhhh----
Confidence 567999999999999999988765 6999999999997776332110000 00000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|..++-. ..++||+|+.-.+-... ..+ .++++.+.+.|+|||+++.
T Consensus 127 ----~~~d~rv~i~~~Da~~~l~---~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 127 ----NGKHEKAKLTIGDGFEFIK---NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp ----TTCCSSEEEEESCHHHHHH---HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccCCCCceEEEChHHHHHh---ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 0012358899999877533 25789999865543221 111 4799999999999999984
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=1.7e-06 Score=82.58 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|.|.|.++.++.+.. -.|+++|++..++.+++.-+.. ... +.
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~------------~~~--~~-------------- 128 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE------------WHQ--GA-------------- 128 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHH------------HHT--TG--------------
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcc------------ccc--Cc--------------
Confidence 56799999999999999998763 5899999999999665522110 000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccC-C-hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FID-T-AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlD-t-a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|.+++-. ...++||+|+.-. +.. . +..+ .++++.+.+.|||||+++.
T Consensus 129 ------~~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 129 ------FDDPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp ------GGCTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred ------cCCCceEEEEchHHHHhh--hcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 001247889999988543 2357899998543 222 2 2223 4899999999999999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=1.4e-05 Score=74.75 Aligned_cols=122 Identities=15% Similarity=0.302 Sum_probs=82.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+..+|||.|||.|-++..+|... ..|+|+|+|...+..|+.-... +
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~----~----------------------------- 156 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER----H----------------------------- 156 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH----c-----------------------------
Confidence 45689999999999999998775 5799999999999877732110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------hh-HHHHHHHHHHhccCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------HN-IVEYIEIISRILKDG 309 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta------------------~n-i~~yl~~I~~~LKpG 309 (394)
.....+.+..+|+.+... ...+.||+||++= ||.+. .| +.-|-+-+.++|+||
T Consensus 157 -----~~~~~~~i~~~~~~~~~~--~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~ 229 (271)
T d1nv8a_ 157 -----GVSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 229 (271)
T ss_dssp -----TCTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred -----CCCceeEEeecccccccc--cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCC
Confidence 011236678888877543 2347899999882 22211 11 233445567899999
Q ss_pred cEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 310 GVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 310 G~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
|+++- +|+- -.+++++++++.||
T Consensus 230 G~l~~Eig~~------------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 230 KIVLMEIGED------------------QVEELKKIVSDTVF 253 (271)
T ss_dssp CEEEEECCTT------------------CHHHHTTTSTTCEE
T ss_pred CEEEEEECHH------------------HHHHHHHHHHhCCE
Confidence 98873 3321 24667777888887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=4.9e-06 Score=78.80 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+||++|.|.|.++.++.+.. -.|+++|++..++.+++.-+.. .+. ..
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~------------~~~------------~~---- 140 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQ------------TSC------------GF---- 140 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHH------------HHG------------GG----
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh------------hcc------------cc----
Confidence 46799999999999999999873 5799999999999776632211 000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-C--hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-T--AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-t--a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
...+++++.+|..+.-. ...++||+|+.-.+-. . +..+ .++++.+.+.|+|||+++.
T Consensus 141 -------~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 141 -------DDPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp -------GCTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred -------cCCCcEEEhhhHHHHHh--cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 01247889999887543 2457899998654422 1 1122 4899999999999999985
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=1.2e-05 Score=75.85 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|-|.|.++.++.+. +. .|+.+|++..++.+++.-+......
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~----------------------------- 130 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG----------------------------- 130 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-----------------------------
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc-----------------------------
Confidence 5679999999999999999987 43 7999999999997776332110000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
....+++++.+|..+.... ..+++||+|+.-.+-. .+..+ .++++.+.++|+|||+++.
T Consensus 131 ------~~~~r~~i~~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 131 ------YEDPRVNLVIGDGVAFLKN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp ------GGSTTEEEEESCHHHHHHT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCcEEEEccHHHHHhh-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence 0013478899998775421 2346899998655422 12222 3799999999999999994
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=6.4e-06 Score=77.56 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+||++|-|.|..+.++.+. .-.|+.+|+...++.+++.-+.... . . +
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~------------~------------~--~-- 129 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA------------I------------G--Y-- 129 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------------G------------G--G--
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc------------c------------c--c--
Confidence 5679999999999999999987 3589999999999987763332100 0 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHH--HHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIV--EYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~--~yl~~I~~~LKpGG~wIN 314 (394)
...+++++.+|.++.-. ...++||+|+.-.+-+ .+..+. ++++.+.+.|+|||+++.
T Consensus 130 -------~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 130 -------SSSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp -------GCTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCceEEEccHHHHHh--cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 01247889999887543 2357899998665422 122222 689999999999999984
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.01 E-value=4.7e-06 Score=79.63 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+||++|-|.|.++.++.+.. -.|+.+|+...++.+++.-+.. .+. ..
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~------------~~~------------~~---- 157 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG------------MSC------------GF---- 157 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT------------TSG------------GG----
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchh------------hcc------------cc----
Confidence 56799999999999999999864 5899999999999776632211 000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
...++.++.+|..+.-. ...++||+|+.-.+-.. +..+ .++++.+.++|+|||+++.
T Consensus 158 -------~dprv~i~i~Da~~~l~--~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~ 218 (312)
T d2b2ca1 158 -------SHPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 218 (312)
T ss_dssp -------GCTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred -------CCCCeEEEEchHHHHHH--hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence 01247889999887543 24578999996654221 2222 3689999999999999995
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=1.7e-05 Score=69.29 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+|||+-||+|.++.|.+.+|. .|+.+|.+...+...+-.+... .+.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l----------------------------~~~-- 92 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL----------------------------KCS-- 92 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------TCC--
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhh----------------------------ccc--
Confidence 355899999999999999999998 7999999998875433221110 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHH--HhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIIS--RILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta---~ni~~yl~~I~--~~LKpGG~wI 313 (394)
.....+...|..+..........||+| |+|.+ ......++.|. ++|+++|++|
T Consensus 93 -------~~~~~~~~~d~~~~l~~~~~~~~fDlI----FlDPPY~~~~~~~~l~~l~~~~~L~~~~lii 150 (183)
T d2ifta1 93 -------SEQAEVINQSSLDFLKQPQNQPHFDVV----FLDPPFHFNLAEQAISLLCENNWLKPNALIY 150 (183)
T ss_dssp -------TTTEEEECSCHHHHTTSCCSSCCEEEE----EECCCSSSCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred -------ccccccccccccccccccccCCcccEE----EechhHhhhhHHHHHHHHHHhCCcCCCcEEE
Confidence 011344555544433222234579988 56654 22445667665 4799999887
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.95 E-value=2.5e-05 Score=71.31 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 209 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s 209 (394)
+++.+-+.... .++.+||++|||+|.|+..|+++|..|+|+|++..|+...
T Consensus 9 i~~~iv~~~~~---~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l 59 (235)
T d1qama_ 9 NIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTT 59 (235)
T ss_dssp HHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHH
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHH
Confidence 55555554432 3678999999999999999999999999999999997543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.90 E-value=2.5e-05 Score=76.47 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=87.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHhhhhhcccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTETAG 220 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---------------Gf~v~G~D~S~~ML~~s~filn~~~~~~ 220 (394)
|++.+-+.+.. ..+.+||||.||+|.+..++.++ ...+.|+|++..+...|+..+--
T Consensus 150 Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l----- 221 (425)
T d2okca1 150 LIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL----- 221 (425)
T ss_dssp HHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-----
T ss_pred hhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-----
Confidence 55555555432 25679999999999998877654 23588999999888666532110
Q ss_pred ccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc----------
Q 016155 221 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF---------- 288 (394)
Q Consensus 221 ~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF---------- 288 (394)
| .+. .....+..+|+++.. ....||+|+++ |-
T Consensus 222 --------~-------------g~~-----------~~~~~i~~~d~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~ 265 (425)
T d2okca1 222 --------H-------------GIG-----------TDRSPIVCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDIN 265 (425)
T ss_dssp --------T-------------TCC-----------SSCCSEEECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCC
T ss_pred --------c-------------CCc-----------cccceeecCchhhhh----cccccceEEecCCCCCCccccchhh
Confidence 0 000 011345667776543 24689999987 31
Q ss_pred -----cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 289 -----IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 289 -----lDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
..+...-..++..+.+.|||||+.+-+-|--+-+.. =+...+++.|.+. +.+..
T Consensus 266 ~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~-----------~~~~~iR~~Ll~~-~~i~a 324 (425)
T d2okca1 266 RPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA-----------GAGETIRKRLLQD-FNLHT 324 (425)
T ss_dssp CTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS-----------THHHHHHHHHHHH-EEEEE
T ss_pred hhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhh-----------hhHHHHHHHHHHh-cchhH
Confidence 112222345899999999999998866553211111 0345788877664 44444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=1.5e-05 Score=74.47 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|-|.|..+.++.+. + -.|+.+|+...++.+|+.-+.. .. +.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~------------~~---~~-------------- 125 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS------------IA---GK-------------- 125 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH------------HH---TT--------------
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChh------------hc---cc--------------
Confidence 4679999999999999999986 4 5899999999999777633211 00 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
....++.++.+|..+.-. ...++||+|+.-.+-. .+.+ -.++++.+.+.|+|||+++.
T Consensus 126 ------~~d~r~~i~~~D~~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 126 ------LDDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp ------TTSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCeEEEechHHHHHh--hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 001247889999887543 2357899998554311 1122 23799999999999999985
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.83 E-value=6.5e-06 Score=75.86 Aligned_cols=90 Identities=10% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+-+.... .+..+||++|||+|.|+..|+++|..|+|+|++..|+.. ..+
T Consensus 17 ii~kIv~~~~~---~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~-------l~~----------------- 69 (245)
T d1yuba_ 17 VLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNL-------SSE----------------- 69 (245)
T ss_dssp THHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSS-------SSC-----------------
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhh-------hhh-----------------
Confidence 44444444432 256799999999999999999999999999999988521 100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 292 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta 292 (394)
++ ....++.++.||++++-. ....++.||.+ |.|-|.
T Consensus 70 ---------~~--------~~~~n~~ii~~D~l~~~~---~~~~~~~vv~NLPY~Ist~ 108 (245)
T d1yuba_ 70 ---------KL--------KLNTRVTLIHQDILQFQF---PNKQRYKIVGNIPYHLSTQ 108 (245)
T ss_dssp ---------TT--------TTCSEEEECCSCCTTTTC---CCSSEEEEEEECCSSSCHH
T ss_pred ---------hh--------hhccchhhhhhhhhcccc---ccceeeeEeeeeehhhhHH
Confidence 00 112358999999998643 24566777776 567664
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=9.3e-05 Score=65.02 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++..++|..+|.|..+.+|.+++-.|.|+|....|+..++.+.
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~------------------------------------- 60 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH------------------------------------- 60 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-------------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-------------------------------------
Confidence 6789999999999999999999889999999999986555221
Q ss_pred CCCCCCCCceeEEecccccccCC--CCCCCCccEEEE-----ecccCChhh----HHHHHHHHHHhccCCcEEEEecCcc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVT-----CFFIDTAHN----IVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~--~~~~~~fD~VvT-----~fFlDta~n----i~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
..++.++.++|.++... ....+.+|.|+- .+-||.+.. +...|+...++|||||.++- +.
T Consensus 61 ------~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i---i~ 131 (182)
T d1wg8a2 61 ------LPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV---IA 131 (182)
T ss_dssp ------CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE---EE
T ss_pred ------ccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE---Ee
Confidence 01367777777764321 012367888873 234555433 34568888999999999985 23
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
||.. ....++..+++.+|+++..+.+
T Consensus 132 fhs~-------------Ed~ivk~~~~e~~~k~i~kK~i 157 (182)
T d1wg8a2 132 FHSL-------------EDRVVKRFLRESGLKVLTKKPL 157 (182)
T ss_dssp CSHH-------------HHHHHHHHHHHHCSEESCSSCB
T ss_pred cccc-------------hhHHHHHHHhhccceeccCCCc
Confidence 4422 2246888888889988765533
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00089 Score=67.00 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--------------------CCeEEEEeCCHHHHHHHhhh--
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--------------------GFISQGNEFSYYMMICSSFI-- 212 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--------------------Gf~v~G~D~S~~ML~~s~fi-- 212 (394)
.|++.+-+.+... .+.+|+||.||+|.+.....+. .....|.|+...|...+..-
T Consensus 151 ~Iv~~mv~ll~~~---~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 151 PLIKTIIHLLKPQ---PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred chhHhhhhcccCc---cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 4566666655432 5679999999999997765442 12578999999888665522
Q ss_pred hhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c---
Q 016155 213 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--- 287 (394)
Q Consensus 213 ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f--- 287 (394)
+.... ..| . .+-.+..+++..-.. ....+||+|+++ |
T Consensus 228 l~~~~----~~i--------------------~------------~~~~~~~~~~l~~d~--~~~~kfD~Ii~NPPfg~~ 269 (524)
T d2ar0a1 228 LHDIE----GNL--------------------D------------HGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSA 269 (524)
T ss_dssp TTTCC----CBG--------------------G------------GTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTC
T ss_pred hhccc----ccc--------------------c------------ccchhhhhhhhhhcc--cccccceeEEecCCcccc
Confidence 21100 000 0 001233344432111 123678988877 3
Q ss_pred --------ccCChhh-HHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 288 --------FIDTAHN-IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 288 --------FlDta~n-i~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
+.-...+ -..++..+.+.|||||+..-+-|--+-|.. -+...|++.|-+. +.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~-----------~~~~~iR~~Ll~~-~~i~a 333 (524)
T d2ar0a1 270 AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-----------GKGTDIRRDLMDK-CHLHT 333 (524)
T ss_dssp SSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCC-----------THHHHHHHHHHHH-EEEEE
T ss_pred ccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhh-----------hhhHHHHHHHHHc-CCceE
Confidence 1111112 235899999999999998876553222221 0234677766554 34444
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.37 E-value=0.0016 Score=59.41 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=95.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|+|.|-.+.-||-. ...++-+|-+..-..+-+.+...- .+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----------------------------~L-- 119 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----------------------------QL-- 119 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----------------------------TC--
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----------------------------CC--
Confidence 4568999999999999988864 678999999988775544332210 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYG 327 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~g 327 (394)
.++.++.+...++-......+.||+|++--|-. +...++-..++||+||.||-+ |+-
T Consensus 120 ---------~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~----l~~ll~~~~~~l~~~g~~i~~KG~~--------- 177 (239)
T d1xdza_ 120 ---------ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR----LSVLSELCLPLVKKNGLFVALKAAS--------- 177 (239)
T ss_dssp ---------SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC----HHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred ---------CCcEEEeehhhhccccccccccceEEEEhhhhC----HHHHHHHHhhhcccCCEEEEECCCC---------
Confidence 135556665544322112346899998876643 456788899999999999952 321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 386 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~ 386 (394)
++=..++.++.+...|+++........++... ...+.+.+|...
T Consensus 178 ------~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~---------~r~lv~i~K~~~ 221 (239)
T d1xdza_ 178 ------AEEELNAGKKAITTLGGELENIHSFKLPIEES---------DRNIMVIRKIKN 221 (239)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCC---------EEEEEEEEECSC
T ss_pred ------hHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCC---------CEEEEEEEECCC
Confidence 11123455667788999988765433343332 234556666543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00044 Score=64.48 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 208 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~ 208 (394)
|++.+-+.... .++..||++|+|+|.|+..|+++|..|+++|++..|+..
T Consensus 9 i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~ 58 (278)
T d1zq9a1 9 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 58 (278)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHH
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHH
Confidence 45555554432 256799999999999999999999999999999999754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00078 Score=63.46 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+.+.... .+..+|||+-||+|.++.-||+.+-.|+|+|.+..++..|+.-... +
T Consensus 200 l~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~----n--------------- 257 (358)
T d1uwva2 200 MVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL----N--------------- 257 (358)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T---------------
T ss_pred HHHHHHHhhcc---CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHh----c---------------
Confidence 44444444332 2567899999999999999999999999999999999877632110 1
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-hHHHHHHHHHHhccCCc-EE
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGG-VW 312 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~-ni~~yl~~I~~~LKpGG-~w 312 (394)
.-.|..|+.+|..+... .......||+|| +|... -+.+.++.|.+. +|.= +.
T Consensus 258 --------------------~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi----lDPPR~G~~~~~~~l~~~-~~~~ivY 312 (358)
T d1uwva2 258 --------------------GLQNVTFYHENLEEDVTKQPWAKNGFDKVL----LDPARAGAAGVMQQIIKL-EPIRIVY 312 (358)
T ss_dssp --------------------TCCSEEEEECCTTSCCSSSGGGTTCCSEEE----ECCCTTCCHHHHHHHHHH-CCSEEEE
T ss_pred --------------------ccccceeeecchhhhhhhhhhhhccCceEE----eCCCCccHHHHHHHHHHc-CCCEEEE
Confidence 01246778887765322 112346789874 57542 244556666653 3421 11
Q ss_pred EEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 313 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 313 IN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
|-..|.. | ..|+..|+ +.||++.+...
T Consensus 313 VSCnp~T----------------l-aRDl~~l~-~~gy~l~~i~~ 339 (358)
T d1uwva2 313 VSCNPAT----------------L-ARDSEALL-KAGYTIARLAM 339 (358)
T ss_dssp EESCHHH----------------H-HHHHHHHH-HTTCEEEEEEE
T ss_pred EeCCHHH----------------H-HHHHHHHH-HCCCeEeEEEE
Confidence 2222321 1 23555544 67999998663
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00083 Score=59.93 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=86.4
Q ss_pred cchHHHHHHHHHHhhcCccc----Ch-hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEE
Q 016155 125 ADVDKVRCIIRNIVRDWAAE----GK-TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQ 197 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~e----g~-~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~ 197 (394)
..++++. ...++..+|... +. ...+..-.-|++-|.- ++.. ++.+|||+|+|.|-.+.-||-.. ..++
T Consensus 19 ~q~~~L~-~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~-~~~~---~~~~ilDiGsGaG~PGi~laI~~p~~~~~ 93 (207)
T d1jsxa_ 19 HQKNQLI-AYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV-APYL---QGERFIDVGTGPGLPGIPLSIVRPEAHFT 93 (207)
T ss_dssp HHHHHHH-HHHHHHHHHC------------CHHHHHHHHHHHH-GGGC---CSSEEEEETCTTTTTHHHHHHHCTTSEEE
T ss_pred HHHHHHH-HHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhh-hhhh---cCCceeeeeccCCceeeehhhhcccceEE
Confidence 4445554 555666778641 11 1112222235555442 2211 34689999999999999999764 6899
Q ss_pred EEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC
Q 016155 198 GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV 277 (394)
Q Consensus 198 G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~ 277 (394)
.+|.+..=+.+.+.+.... . -.|+....+...++.. .
T Consensus 94 Lves~~KK~~FL~~~~~~L----------------------------~-----------L~nv~v~~~R~E~~~~----~ 130 (207)
T d1jsxa_ 94 LLDSLGKRVRFLRQVQHEL----------------------------K-----------LENIEPVQSRVEEFPS----E 130 (207)
T ss_dssp EEESCHHHHHHHHHHHHHT----------------------------T-----------CSSEEEEECCTTTSCC----C
T ss_pred EEecchHHHHHHHHHHHHc----------------------------C-----------Ccceeeeccchhhhcc----c
Confidence 9999987775544332110 0 1246777777666532 4
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+||+|++--|-. +...++-..+.||+||.++-
T Consensus 131 ~~fD~V~sRA~~~----~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 131 PPFDGVISRAFAS----LNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp SCEEEEECSCSSS----HHHHHHHHTTSEEEEEEEEE
T ss_pred cccceehhhhhcC----HHHHHHHHHHhcCCCcEEEE
Confidence 6899998766633 45678888999999999985
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00059 Score=62.64 Aligned_cols=37 Identities=16% Similarity=0.014 Sum_probs=34.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
++..||++|||+|.|+..|+++|..|+++|++..|+.
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~ 57 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAA 57 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhH
Confidence 5678999999999999999999999999999999874
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.97 E-value=0.00024 Score=65.55 Aligned_cols=82 Identities=16% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...+|||.=||+|+.++.||.+|..|+++|-+..+....+--++++....+. ..
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~------------------~~-------- 141 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEI------------------GG-------- 141 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTT------------------HH--------
T ss_pred CCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchh------------------HH--------
Confidence 4458999999999999999999999999999998764433323222110000 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 284 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv 284 (394)
....+++++.||..++.. ...+.||+|+
T Consensus 142 ----~~~~ri~li~~Ds~~~L~--~~~~~~DvIY 169 (250)
T d2oyra1 142 ----WLQERLQLIHASSLTALT--DITPRPQVVY 169 (250)
T ss_dssp ----HHHHHEEEEESCHHHHST--TCSSCCSEEE
T ss_pred ----HHhhhheeecCcHHHHHh--ccCCCCCEEE
Confidence 012358999999888653 2356799985
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00054 Score=57.99 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|+| +|.++..+|+ +|.+|.++|.|...+..++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 67899999999 8888888874 5999999999998876554
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.48 E-value=0.043 Score=49.83 Aligned_cols=161 Identities=21% Similarity=0.204 Sum_probs=86.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~-G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.|||++=||.|.+..-|.+.||+|. ++|+....+.+.+ .|+.. .. . ..-.++..-.+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~--~N~~~----------~~----~-~Di~~~~~~~~~~- 71 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE--MNFGE----------KP----E-GDITQVNEKTIPD- 71 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH--HHHSC----------CC----B-SCGGGSCGGGSCC-
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHH--HHCCC----------CC----c-CchhcCchhhcce-
Confidence 678999999999999999999999865 7999998876544 33211 00 0 0000011111111
Q ss_pred CCCCCCCCCceeEEecccc-cccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE-EecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFV-EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI-NLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~-ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI-N~GPLlyh~~~~~g 327 (394)
+.++.|-+- .-++. .+.- --.-|.-.++...+-.+-+.+||.=.++ |+-.++..-.
T Consensus 72 ----------~Dll~ggpPCq~fS~---ag~~-----~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~---- 129 (327)
T d2c7pa1 72 ----------HDILCAGFPCQAFSI---SGKQ-----KGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDN---- 129 (327)
T ss_dssp ----------CSEEEEECCCTTTCT---TSCC-----CGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGG----
T ss_pred ----------eeeeecccccchhhh---hhhh-----cCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhcc----
Confidence 222222220 00000 0000 0011222234444445557789965555 5544432111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
.-..+++.+.++..|+.+...-.....|+.... =...|+|+.|+
T Consensus 130 -------~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~------R~R~fivg~r~ 173 (327)
T d2c7pa1 130 -------GNTLEVVKNTMNELDYSFHAKVLNALDYGIPQK------RERIYMICFRN 173 (327)
T ss_dssp -------GHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBC------CEEEEEEEEBG
T ss_pred -------chhhHHhhhHHHhcCCcceeeEecHHHcCCCch------hhhheeeeecc
Confidence 124578888999999988765544556654332 25678888886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0015 Score=55.24 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=62.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
+++.+||+.|+ |.|.++..+|+. |++|.+++-|..-+..++.+ .+. ..|
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--Ga~----~vi---------------------- 78 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--GAH----EVF---------------------- 78 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TCS----EEE----------------------
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccccccccccc--Ccc----ccc----------------------
Confidence 37789999996 688999998876 99999999888765433311 010 000
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
.....||.+-.......+.+|+|+.+ .-+ .+++...++|+|||++|.+|.
T Consensus 79 --------------~~~~~~~~~~i~~~t~~~g~d~v~d~-----~g~--~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 79 --------------NHREVNYIDKIKKYVGEKGIDIIIEM-----LAN--VNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp --------------ETTSTTHHHHHHHHHCTTCEEEEEES-----CHH--HHHHHHHHHEEEEEEEEECCC
T ss_pred --------------ccccccHHHHhhhhhccCCceEEeec-----ccH--HHHHHHHhccCCCCEEEEEec
Confidence 00001222210000013569999754 322 578888999999999998863
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.00 E-value=0.0063 Score=54.86 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccc
Q 016155 171 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~----~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v 244 (394)
++.+||++|++.|.-+..+|. .| -.+.|+|+...+.. ..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~----------~~------------------------- 124 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ----------IP------------------------- 124 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC----------CC-------------------------
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh----------hh-------------------------
Confidence 466899999999987766653 23 47889998653310 00
Q ss_pred ccCCCCCCCCCCCCceeEEecccccccCCC-CCCCCccEEEEecccCChh---hHHHHHHHHHHhccCCcEEEEecCcch
Q 016155 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTCFFIDTAH---NIVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 245 ~iPDv~p~~~~~~~~ls~~~GDf~ely~~~-~~~~~fD~VvT~fFlDta~---ni~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
.....++.+..||..+.-... .....+|.| |||..+ .+..-+ ..+++|||||++|--....|
T Consensus 125 ---------~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI----fID~~H~~~~v~~~~-~~~~lLk~GG~iIveD~i~~ 190 (232)
T d2bm8a1 125 ---------ASDMENITLHQGDCSDLTTFEHLREMAHPLI----FIDNAHANTFNIMKW-AVDHLLEEGDYFIIEDMIPY 190 (232)
T ss_dssp ---------GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE----EEESSCSSHHHHHHH-HHHHTCCTTCEEEECSCHHH
T ss_pred ---------hccccceeeeecccccHHHHHHHHhcCCCEE----EEcCCcchHHHHHHH-HHhcccCcCCEEEEEcCCcc
Confidence 000124788888875432110 123457765 566442 222222 35689999999995443334
Q ss_pred h
Q 016155 321 H 321 (394)
Q Consensus 321 h 321 (394)
.
T Consensus 191 ~ 191 (232)
T d2bm8a1 191 W 191 (232)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.015 Score=50.22 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCC
Q 016155 160 LDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 236 (394)
Q Consensus 160 L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~ 236 (394)
|.+.|.-. +++.+|||+||+-|.....++++ .-.|.|+|+-. |
T Consensus 13 I~~k~~l~--k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~------------------------------- 58 (180)
T d1ej0a_ 13 IQQSDKLF--KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M------------------------------- 58 (180)
T ss_dssp HHHHHCCC--CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C-------------------------------
T ss_pred HHHHhCcc--CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c-------------------------------
Confidence 44444422 26779999999999998877764 24577777543 1
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecccCC--------hhh---HHHHHH
Q 016155 237 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFFIDT--------AHN---IVEYIE 300 (394)
Q Consensus 237 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~-----~~~~~~fD~VvT~fFlDt--------a~n---i~~yl~ 300 (394)
. .-.+..++.||+.+.... ....+.+|+|++=--.++ ... +...+.
T Consensus 59 -------------~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~ 120 (180)
T d1ej0a_ 59 -------------D-----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALE 120 (180)
T ss_dssp -------------C-----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -------------c-----ccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHH
Confidence 0 012356778887652210 013467999986532222 211 123466
Q ss_pred HHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 301 IISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 301 ~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
...++||+||.||- +. |.. -..++|...+++. |+-++.
T Consensus 121 ~a~~~Lk~gG~fV~----K~-F~g-----------~~~~~l~~~l~~~-F~~V~~ 158 (180)
T d1ej0a_ 121 MCRDVLAPGGSFVV----KV-FQG-----------EGFDEYLREIRSL-FTKVKV 158 (180)
T ss_dssp HHHHHEEEEEEEEE----EE-ESS-----------TTHHHHHHHHHHH-EEEEEE
T ss_pred hhhhccCCCCcEEE----EE-ecC-----------ccHHHHHHHHHhh-cCEEEE
Confidence 66799999999994 21 211 1356788888765 876663
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.038 Score=50.03 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=31.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf--~-v~G~D~S~~ML~~s~ 210 (394)
+.+||++=||.|.+..-|.+.|+ + |.++|+....+.+.+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~ 43 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHH
Confidence 46899999999998888878897 3 469999998876544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.87 E-value=0.12 Score=45.99 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=31.3
Q ss_pred eEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHh
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~-G~D~S~~ML~~s~ 210 (394)
+||++=||.|.+..-|-+.||++. ++|+......+.+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~ 39 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE 39 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHH
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 799999999999888888899876 9999998775433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.71 E-value=0.027 Score=46.69 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.||| .|.++..+|+. |..|.++|.+..-+..++
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 67899999998 67777766655 999999999998876554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.69 E-value=0.0088 Score=57.55 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCC-eEEEEeCCHHHHHHHhhh--hhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISH-LGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+.||+|-.+...|+ .|. .|++||+|...+..++.- +|..... .........
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~-----------------~~~~~~~~~- 106 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL-----------------RESKGRAIL- 106 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCC-----------------EECSSEEEE-
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccc-----------------ccccccccc-
Confidence 456899999999999997766 454 799999999998655532 2221100 000000000
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.....+.+...|...+.. ...+.||+|. ||.---...||+...+.+|.||++.-
T Consensus 107 --------~~~~~~~~~~~Da~~~~~--~~~~~fDvID----iDPfGs~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 107 --------KGEKTIVINHDDANRLMA--ERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp --------ESSSEEEEEESCHHHHHH--HSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred --------cccceeEeehhhhhhhhH--hhcCcCCccc----CCCCCCcHHHHHHHHHHhccCCEEEE
Confidence 011236777788765542 2356799874 56544455799999999999999973
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.014 Score=49.24 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=32.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.||| .|.++..+|+. |. .|.++|.+..-+..++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 67899999998 47888888776 87 7999999998886554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.62 E-value=0.039 Score=50.39 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~ 201 (394)
+..+|+|+|||.|.-++.+|.+. -.|.|.++
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i 98 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 98 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence 56799999999999999999874 45666666
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.61 E-value=0.03 Score=47.36 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|||- |.++..+|+. |. .|.++|.+..-+..++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 3678999999986 8888888776 76 6999999998776555
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.37 E-value=0.11 Score=48.20 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||..||-|.=+..||.. .-.++++|.+..-+......+++..-
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~----------------------------- 166 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV----------------------------- 166 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----------------------------
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-----------------------------
Confidence 6789999999999988888765 34699999998877543322222100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhHHH-------HHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNIVE-------YIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f------------FlDta~ni~~-------yl~~I~~~ 305 (394)
.++..+..|++.+.. ..+.||.|+. |- .-.+..++.+ .+....+.
T Consensus 167 ----------~~i~~~~~d~~~~~~---~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 233 (313)
T d1ixka_ 167 ----------LNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 233 (313)
T ss_dssp ----------CSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hcccccccccccccc---ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhe
Confidence 123445556555422 2467887762 10 1123333433 46778899
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|||||++| |..-.. .-+=+.+-+..++++.+|+++..
T Consensus 234 lk~gG~lV------YsTCSl-------~~eENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 234 LKPGGILV------YSTCSL-------EPEENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp EEEEEEEE------EEESCC-------CGGGTHHHHHHHHHHSSEEEECC
T ss_pred eCCCcEEE------EeeccC-------ChHhHHHHHHHHHhcCCCEEeec
Confidence 99999987 211000 00114566777888889888763
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.35 E-value=0.023 Score=49.49 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
|.-.+.....-++.. .++.+|+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 13 ~~~~~~~~~~~~~~~--~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 13 YEEFLEIARNGLKAT--SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp HHHHHHHHHHCSCCC--SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HHHHHHHHhcCCCCC--CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 444555555555433 2667999999999999 788999999999999654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.28 E-value=0.062 Score=47.20 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=54.1
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccC---------ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---------TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~--fFlD---------ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.|+.||-+++... -+++++|+|+|- |.+. -..-+..++++++++|||||.++.++...|....
T Consensus 6 ~~~~~D~le~l~~-l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~----- 79 (279)
T d1eg2a_ 6 VYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA----- 79 (279)
T ss_dssp EEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT-----
T ss_pred eEEechHHHHHhh-CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc-----
Confidence 4677888875321 246899999986 5431 1233567788999999999987754332222110
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
........+..++...||.+...
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 80 ---GSGDLISIISHMRQNSKMLLANL 102 (279)
T ss_dssp ---TBCCHHHHHHHHHHHCCCEEEEE
T ss_pred ---cccchhhHHHHHHhccCceeeee
Confidence 11223455667788899998663
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.14 E-value=0.034 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.| .|+|.++..||+. |..|.+..-+..=+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~ 63 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR 63 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccc
Confidence 678999987 4678888888876 99999888776544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.017 Score=49.34 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.8
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+..||+|+|+|.+.| |++|+++|++|+-+|-+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 677999999999999 889999999999998654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.88 E-value=0.16 Score=41.60 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=57.5
Q ss_pred eEEEecCC--CChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAG--LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCG--lGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
||.++|+| =+.+|..|++.||.|++.|.+...+..+.. ...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-------~~~------------------------------ 44 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-------RQL------------------------------ 44 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------TTS------------------------------
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-------hhc------------------------------
Confidence 68899887 345678889999999999999877643221 000
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
+. ...+..+.. ...|+|+-+- ....+.+.++.+...|+++-++++.+..
T Consensus 45 --------~~-~~~~~~~~~------~~~DiIilav---p~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 45 --------VD-EAGQDLSLL------QTAKIIFLCT---PIQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp --------CS-EEESCGGGG------TTCSEEEECS---CHHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred --------cc-eeeeecccc------cccccccccC---cHhhhhhhhhhhhhhcccccceeecccc
Confidence 00 001112221 3458776432 2345778889999999999999876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.53 E-value=0.055 Score=46.19 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=59.7
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+||+.| -|.|..+..||+ +|..|.+.--|..-+..++-+ .+ .+.|. ++
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l--Ga----~~vi~-----------~~--------- 84 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL--GA----KEVLA-----------RE--------- 84 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT--TC----SEEEE-----------CC---------
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc--cc----ceeee-----------cc---------
Confidence 577899998 478999999984 599999988776655433311 11 11110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
.++.+... .-..+.+|+|+.+-.= +++....++|||||+++.+|+.
T Consensus 85 -----------------~~~~~~~~-~~~~~gvD~vid~vgg-------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 85 -----------------DVMAERIR-PLDKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp ---------------------------CCSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECSCC
T ss_pred -----------------hhHHHHHH-HhhccCcCEEEEcCCc-------hhHHHHHHHhCCCceEEEeecc
Confidence 00011100 0123679999654331 4588889999999999988764
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.13 Score=46.90 Aligned_cols=40 Identities=10% Similarity=-0.112 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~ 210 (394)
++.+|||..||-|.=+..||.++. .++++|.|..-+....
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~ 143 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY 143 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh
Confidence 678999999999999999998865 5899999998775444
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.039 Score=45.95 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=32.4
Q ss_pred CCCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 016155 170 ESPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMMICS 209 (394)
Q Consensus 170 ~~~~~VLvpGCG--lGRLa~eLA~~-Gf~v~G~D~S~~ML~~s 209 (394)
+++.+||+.|+| .|.++..||+. |..|.+.+.|..-+..+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~ 69 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA 69 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH
Confidence 367899998544 78899999877 99999999999876443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.98 E-value=0.24 Score=40.54 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.4
Q ss_pred eEEEecCCC-C-hhHHHHHHcCC--eEEEEeCCHHHHHHH
Q 016155 174 ACLVPGAGL-G-RLALEISHLGF--ISQGNEFSYYMMICS 209 (394)
Q Consensus 174 ~VLvpGCGl-G-RLa~eLA~~Gf--~v~G~D~S~~ML~~s 209 (394)
+|+.+|||+ | -+|.-|.+.|+ .|+|.|.+..-+..+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a 42 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA 42 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH
Confidence 699999997 3 47888999996 789999999887543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.92 E-value=0.026 Score=47.41 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|..=+
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~ 65 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL 65 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccc
Confidence 37789999884 568889888877 99999999887543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.71 E-value=0.031 Score=47.12 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+||+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999 789999999999999653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.53 E-value=0.14 Score=44.19 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=49.5
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--ccc-----CChhh-------HHHHHHHHHHhccCCcEEEEecCcchhhhhcc
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFI-----DTAHN-------IVEYIEIISRILKDGGVWINLGPLLYHFADLY 326 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~--fFl-----Dta~n-------i~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~ 326 (394)
.+..||.+++... -.++++|+|+|- |.+ |...+ +.+.+++++++|||||.++.++-
T Consensus 6 ~i~~gDcle~l~~-lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~--------- 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT--------- 75 (256)
T ss_dssp SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---------
T ss_pred EEEeccHHHHHhh-CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC---------
Confidence 4688999885321 236889999987 543 22222 33467789999999997753211
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 327 GQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 327 g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
......+..++...||.....
T Consensus 76 --------~~~~~~~~~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 76 --------PFNCAFICQYLVSKGMIFQNW 96 (256)
T ss_dssp --------HHHHHHHHHHHHHTTCEEEEE
T ss_pred --------chhhhhhhhhhhcccceeeee
Confidence 112345667788899987653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.51 E-value=0.037 Score=46.64 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCCCeEEEecC-C-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 170 ESPPACLVPGA-G-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 170 ~~~~~VLvpGC-G-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
+++.+||+-|+ | .|..+..||+. |.+|.++.-|..-+.
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~ 68 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA 68 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHH
Confidence 37889999887 3 78899999877 899999998887653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.30 E-value=0.1 Score=44.84 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=33.3
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|||. |-++..+|+ +|. .|.++|.+..-+..++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 3788999999998 667788775 465 7999999999887665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.92 E-value=0.17 Score=41.73 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.||| .|-++..+|+ +|..+.++|-+..=+.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~ 68 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE 68 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHH
Confidence 68899999987 4777888877 4999999998876553
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.043 Score=44.85 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
--|+|+|+|.|.| |.+||++|++|+-+|-..
T Consensus 6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 3599999999999 889999999999999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.61 Score=38.21 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|||. |.++..+|+. |. .|.++|.+..=+..++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 678999999975 4456666554 88 7999999998876554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.17 E-value=0.059 Score=44.54 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|| |.|.++..+++ .|+ .|.+.|.+..=+..++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 6789999997 47777776654 575 8999999986654443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.10 E-value=0.079 Score=43.09 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.6
Q ss_pred eEEEecCCCChh--HHHHHHcCC-eEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf-~v~G~D~S~ 203 (394)
+|+++|+|.+.| |+.|+++|+ +|+-+|-+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 799999999999 778999998 699999764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.01 E-value=0.088 Score=48.27 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ 204 (394)
..+|+++|||...| |++|+++|++|+-+|-+.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999999 7889999999999997653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=89.58 E-value=0.078 Score=44.75 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=27.1
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+|+++|+|.+.| |+.|+++|++|+-+|-+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 699999999999 789999999999999753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.29 Score=41.36 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~ 210 (394)
++..||+-| .|.|..+..||+. |+.|.++--|......++
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK 73 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH
Confidence 345899976 4688999999876 999999998887765443
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.37 E-value=0.12 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
...+|+++|+|...| |+.|+++|++|+-+|-.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456899999999988 88999999999999954
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.34 E-value=0.27 Score=45.53 Aligned_cols=37 Identities=11% Similarity=-0.203 Sum_probs=32.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~ 207 (394)
++..||++|.|.|-|+..|..+| ..|+++|....++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~ 81 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 81 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 46789999999999999998874 58999999998763
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.64 Score=42.21 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=32.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|||..||-|.=+..||.+ +..++++|.|..=+...+
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~ 136 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 136 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH
Confidence 6779999999999988888865 568999999987664433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.00 E-value=0.37 Score=42.52 Aligned_cols=51 Identities=10% Similarity=-0.080 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.|-+.+.+ ++..||||=||+|..+..-..+|....|+|+|...+..+.
T Consensus 239 L~~rlI~~~s~----~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~ 289 (320)
T d1booa_ 239 LPEFFIRMLTE----PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 289 (320)
T ss_dssp HHHHHHHHHCC----TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHhhhhccc----CCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHH
Confidence 55665555543 6789999999999999999999999999999999886654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.15 Score=43.49 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 170 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
..+++|+++|.|-..| |+.||++|++|+-.|-+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 4678999999999999 788899999999999754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.72 E-value=2.9 Score=36.60 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlG---RLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
++++||+-|+..| .+|..|++.|++|..++.+..-+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l 43 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKEL 43 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 5789999999765 45778888999999999998655
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=88.51 E-value=0.48 Score=39.62 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=32.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|||. |-++..+|+. |. .|...|.+..=+..++
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 3778999999997 7778887776 76 6889999988776555
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.78 E-value=0.27 Score=41.18 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++..||+-| -|.|.++..||+. |..|.+.--|..-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~ 61 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 455799987 4789999999887 99999988876544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.49 E-value=0.64 Score=39.70 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
+++.|-+.+.+ ++..||||=||.|..+..-.++|....|+|++..-+..|+.-|
T Consensus 201 L~~~lI~~~s~----~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 201 LIERIIRASSN----PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHHCC----TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 55556555543 5779999999999999999999999999999998887666433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.01 E-value=0.4 Score=40.26 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCeEEEec--CCCChhHHHHHH-cCCe-EEEEeCCHHHH
Q 016155 172 PPACLVPG--AGLGRLALEISH-LGFI-SQGNEFSYYMM 206 (394)
Q Consensus 172 ~~~VLvpG--CGlGRLa~eLA~-~Gf~-v~G~D~S~~ML 206 (394)
+..||+-| -|.|..+..||+ .|.. |.++.-|..-.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~ 69 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC 69 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH
Confidence 36899987 589999999999 5865 66777775554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.91 E-value=0.38 Score=40.95 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=60.4
Q ss_pred CCCeEEEecCCCChh-HHHHH-HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRL-ALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL-a~eLA-~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|+|.=.+ |...| .+|..|+..|.+..-+.-....+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--------------------------------- 77 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--------------------------------- 77 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------------------------------
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------------------------------
Confidence 578999999997555 55554 4599999999998776322211100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
++.+...+-..+.. .-...|+|+++-.+...+-..-.=+++-+.+|||.+.|.+
T Consensus 78 ----------~~~~~~~~~~~l~~---~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 78 ----------RVELLYSNSAEIET---AVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp ----------GSEEEECCHHHHHH---HHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred ----------cceeehhhhhhHHH---hhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEe
Confidence 01111111011110 1245799999987765433333356788899999999963
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.90 E-value=0.73 Score=39.87 Aligned_cols=56 Identities=18% Similarity=0.004 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~ 215 (394)
+++.|-+.+.+ ++..||||=||.|..+..-.++|....|+|++..-...|.--++.
T Consensus 196 L~~~~I~~~s~----~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 196 VIERLVRALSH----PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHSC----TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC----CCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45555555432 577999999999999999999999999999999888666644443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=84.84 E-value=2.9 Score=33.49 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=28.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ML 206 (394)
.+|-++|+|.-.+ |..|+++|++|+..|-+..=+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~ 37 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRI 37 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 5789999998655 778899999999999987654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=84.76 E-value=1.5 Score=33.47 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEE--eCCHHHH
Q 016155 171 SPPACLVPGAGLG--RLALEISHLGFISQGN--EFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlG--RLa~eLA~~Gf~v~G~--D~S~~ML 206 (394)
++.+||++|.|-= |-+..|.+.|..|+-+ +.+..+.
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~ 50 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT 50 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH
Confidence 5789999998853 2355566679887755 4555543
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| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.72 E-value=0.24 Score=43.11 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=26.4
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 175 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 175 VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
|+++|+|.+.| |+.|+++|++|+-+|-+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 89999999999 889999999999999654
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| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=83.97 E-value=3 Score=33.57 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=65.8
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
||=++|+|. ..+|..|++.||.|.+.|.+..-+.... .+..
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~--~~~~----------------------------------- 44 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI--AAGA----------------------------------- 44 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--HTTC-----------------------------------
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH--Hhhh-----------------------------------
Confidence 566777765 2346677888999999999987653211 0000
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHH---HHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI---EIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl---~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
....+..++- ...|+|++|. .+.+.+.+.+ ..+...++||-++|+.+....
T Consensus 45 ----------~~~~~~~e~~------~~~d~ii~~v--~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p-------- 98 (161)
T d1vpda2 45 ----------ETASTAKAIA------EQCDVIITML--PNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAP-------- 98 (161)
T ss_dssp ----------EECSSHHHHH------HHCSEEEECC--SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCH--------
T ss_pred ----------hhcccHHHHH------hCCCeEEEEc--CCHHHHHHHHhCCcchhhccCCCCEEEECCCCCH--------
Confidence 0111222321 3458887764 3334444544 457888999999997543211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
-+..++.+.+++.|...+.
T Consensus 99 -------~~~~~~~~~~~~~g~~~vd 117 (161)
T d1vpda2 99 -------LASREISDALKAKGVEMLD 117 (161)
T ss_dssp -------HHHHHHHHHHHTTTCEEEE
T ss_pred -------HHHHHHHHHHHHcCCceec
Confidence 1234666667777887776
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| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.79 E-value=0.24 Score=38.08 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCCeEEEe---cCCCChhHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVP---GAGLGRLALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvp---GCGlGRLa~eLA~~Gf~v~G~D~S~ 203 (394)
...+|..+ |+|.+-||..|+++||.|+|.|...
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56688888 5666788999999999999999853
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| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=82.74 E-value=3 Score=33.01 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCChh----HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGLGRL----ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL----a~eLA~~Gf~v~G~D~S~~M 205 (394)
.-.+|.++| |+|.+ |..|++.||+|++.|.+...
T Consensus 8 ~~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 8 DIHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp TCCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCCeEEEEc-CCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 446899999 55655 55566679999999987644
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| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.41 E-value=0.51 Score=40.48 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+||++|+|-..| |..|+++|+.|+-+|.+...
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 678999999999998 67789999999999987654
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| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=82.11 E-value=0.45 Score=40.42 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
...||+++|+|...| |..|+++|++|+-+|-+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 457999999999998 67889999999999954
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| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.68 E-value=0.7 Score=40.58 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=55.0
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCC------------hhhHHHHHHHHHHhccCCcEEE-EecCcchhhhh
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------AHNIVEYIEIISRILKDGGVWI-NLGPLLYHFAD 324 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt------------a~ni~~yl~~I~~~LKpGG~wI-N~GPLlyh~~~ 324 (394)
=.++.||-+++... -.++++|+|+|- |++.. ...+.+.++.++++|||+|.++ +.++. |....
T Consensus 13 ~~l~~GD~le~l~~-l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~-~~~~~ 90 (320)
T d1booa_ 13 GSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-YMKGV 90 (320)
T ss_dssp EEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-EETTE
T ss_pred CEEEehhHHHHHhh-CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch-hhccc
Confidence 37899999885432 346899999987 54421 1225567899999999998876 44443 21111
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
. .........+.......||.....
T Consensus 91 ~------~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T d1booa_ 91 P------ARSIYNFRVLIRMIDEVGFFLAED 115 (320)
T ss_dssp E------EECCHHHHHHHHHHHTTCCEEEEE
T ss_pred c------cccchhHHHHHHHHHhcCceEeee
Confidence 0 011224455666778889977663
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| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.43 E-value=0.63 Score=37.55 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=30.0
Q ss_pred CCCCeEEEecCCCChh-HHHHHHc-CCeEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGLGRL-ALEISHL-GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRL-a~eLA~~-Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|+|.-.+ +..+|+. |..|.+++.+..=+..++
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 3678999999986555 4555444 899999999987765443
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| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.27 E-value=0.74 Score=37.95 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=28.5
Q ss_pred CCCCeEEEecCCCC-hhHHHHHHc-CCe-EEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGLG-RLALEISHL-GFI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGlG-RLa~eLA~~-Gf~-v~G~D~S~~ML~~s~ 210 (394)
+++.+||+.|||.- .++..+|+. |.. |.+.|.+..=+..++
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 37889999999854 446666644 875 567899887665444
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