Citrus Sinensis ID: 016175

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSALP
cccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHccccccEEEEcccccHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHccHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHccccc
ccHHHHHccccccHHHcHHHHHHHHHccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHEEHHHHHHcccccEEEEEEccccHEEEccccHHHHHHHHHcccccccccccccEEEEcccccccccccEEcccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHcccccHHHccccccccEEcHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEcccccccccccccHHHHHHccc
malsklsspsslstnilkpltnsfllhrpistdttpltietsvpftshqceapsrsvettpKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELmgrkdgcshgkggsmhfykkdsgfygghgivgaqiplgcglafaqkyskdetvtfalygdgaanqgQLFEALNIAalwdlpailvcennhygmgtaewraakspsyykrgdyvpglkvdgMDALAVKQACKFAKEHalkngpmilemdtyryhghsmsdpgstyrtrdeisgvrqerdpIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKakespmpepselftNVYVKGYgvevfgadrkeVRSALP
malsklsspsslstniLKPLTNSFLLHRPISTDTTPLTIETSVPftshqceapsrsvettpkELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAewraakspsyYKRGDYVPGLKVDGMDALAVKQACKFAKehalkngpmILEMDTYRYHGHsmsdpgstyrtrdeisgvrqerdpieRIRKLilahdlatekelkdiekEVRKEVDDAIakakespmpepselFTNVYVKGYGVEVFGADRKEVRSALP
MAlsklsspsslsTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSALP
****************LKPLTNSFLLHRPISTDTTPLTIE***********************LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH****************************RIRKLILAHDLA*********************************LFTNVYVKGYGVEVFGA**********
********************************************F****************KELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRK*******
************STNILKPLTNSFLLHRPISTDTTPLTIETSVPFTS************TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR********
***********************FLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS**D*GSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEV*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSALP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
P52902397 Pyruvate dehydrogenase E1 N/A no 0.954 0.947 0.859 0.0
P52901389 Pyruvate dehydrogenase E1 yes no 0.987 1.0 0.832 0.0
Q8H1Y0393 Pyruvate dehydrogenase E1 no no 0.992 0.994 0.810 0.0
P52903391 Pyruvate dehydrogenase E1 N/A no 0.982 0.989 0.806 0.0
Q6Z5N4390 Pyruvate dehydrogenase E1 yes no 0.946 0.956 0.833 0.0
Q654V6398 Pyruvate dehydrogenase E1 no no 0.931 0.922 0.779 1e-179
Q54C70377 Pyruvate dehydrogenase E1 yes no 0.829 0.867 0.6 1e-115
Q10489409 Pyruvate dehydrogenase E1 yes no 0.857 0.826 0.555 1e-107
P52899397 Probable pyruvate dehydro yes no 0.941 0.934 0.521 1e-105
P16387420 Pyruvate dehydrogenase E1 yes no 0.855 0.802 0.544 1e-105
>sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1 Back     alignment and function desciption
 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/377 (85%), Positives = 353/377 (93%), Gaps = 1/377 (0%)

Query: 19  PLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRM 77
           P + +F L+RPIS+DTT  LTIETS+PFT+H C+ PSRSV T+P ELLSFFR MA MRRM
Sbjct: 21  PFSAAFTLNRPISSDTTATLTIETSLPFTAHNCDPPSRSVTTSPSELLSFFRTMALMRRM 80

Query: 78  EIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEV 137
           EIAADSLYKA L+RGFCHLYDGQEAVA+GMEAG TKKD IITAYRDHCTFLGRGGTLL V
Sbjct: 81  EIAADSLYKANLIRGFCHLYDGQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRV 140

Query: 138 FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFA 197
           ++ELMGR+DGCS GKGGSMHFYKKDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFA
Sbjct: 141 YAELMGRRDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFA 200

Query: 198 LYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGL 257
           LYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGL
Sbjct: 201 LYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGL 260

Query: 258 KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 317
           KVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE
Sbjct: 261 KVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 320

Query: 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGY 377
           RDPIER+RKL+L+HD+ATEKELKD EKEVRKEVD+AIAKAK+SPMP+PS+LF+NVYVKGY
Sbjct: 321 RDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFSNVYVKGY 380

Query: 378 GVEVFGADRKEVRSALP 394
           GVE FG DRKEVR  LP
Sbjct: 381 GVEAFGVDRKEVRVTLP 397
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1
>sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2 Back     alignment and function description
>sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2 Back     alignment and function description
>sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2 SV=1 Back     alignment and function description
>sp|Q654V6|ODPA2_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0246500 PE=2 SV=1 Back     alignment and function description
>sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1 Back     alignment and function description
>sp|Q10489|ODPA_SCHPO Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pda1 PE=1 SV=1 Back     alignment and function description
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2 SV=1 Back     alignment and function description
>sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDA1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
68138987395 pyruvate dehydrogenase, partial [Citrus 0.992 0.989 0.984 0.0
211906500394 pyruvate dehydrogenase alpha subunit [Go 0.931 0.931 0.915 0.0
255558342399 pyruvate dehydrogenase, putative [Ricinu 0.994 0.982 0.850 0.0
157849684389 pyruvate dehydrogenase complex E1 alpha 0.987 1.0 0.850 0.0
356567586395 PREDICTED: pyruvate dehydrogenase E1 com 1.0 0.997 0.822 0.0
356500948396 PREDICTED: pyruvate dehydrogenase E1 com 0.997 0.992 0.833 0.0
356526868394 PREDICTED: pyruvate dehydrogenase E1 com 0.997 0.997 0.825 0.0
1709449397 RecName: Full=Pyruvate dehydrogenase E1 0.954 0.947 0.859 0.0
224100211393 predicted protein [Populus trichocarpa] 0.997 1.0 0.860 0.0
15218940389 pyruvate dehydrogenase complex E1 alpha 0.987 1.0 0.832 0.0
>gi|68138987|gb|AAY86036.1| pyruvate dehydrogenase, partial [Citrus x paradisi] Back     alignment and taxonomy information
 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/391 (98%), Positives = 386/391 (98%)

Query: 4   SKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 63
           SKLSS SSLSTNILKPLTNSF LHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE
Sbjct: 5   SKLSSSSSLSTNILKPLTNSFFLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 64

Query: 64  LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 123
           LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD
Sbjct: 65  LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 124

Query: 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLA 183
           HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS  YGGHGIVGAQIPLGCGLA
Sbjct: 125 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSRLYGGHGIVGAQIPLGCGLA 184

Query: 184 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243
           FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK
Sbjct: 185 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 244

Query: 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 303
           SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS
Sbjct: 245 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 304

Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMP 363
           TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD+AIAKAKESPMP
Sbjct: 305 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDEAIAKAKESPMP 364

Query: 364 EPSELFTNVYVKGYGVEVFGADRKEVRSALP 394
           EPSELFTNVYVKGYGVEVFGADRKEVRS LP
Sbjct: 365 EPSELFTNVYVKGYGVEVFGADRKEVRSVLP 395

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|211906500|gb|ACJ11743.1| pyruvate dehydrogenase alpha subunit [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255558342|ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223540690|gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|157849684|gb|ABV89625.1| pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase [Brassica rapa] Back     alignment and taxonomy information
>gi|356567586|ref|XP_003551999.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356500948|ref|XP_003519292.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356526868|ref|XP_003532038.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|1709449|sp|P52902.1|ODPA_PEA RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|1263302|gb|AAA97411.1| pyruvate dehydrogenase E1 alpha subunit [Pisum sativum] Back     alignment and taxonomy information
>gi|224100211|ref|XP_002311788.1| predicted protein [Populus trichocarpa] gi|222851608|gb|EEE89155.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15218940|ref|NP_176198.1| pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana] gi|27735220|sp|P52901.2|ODPA1_ARATH RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|5080822|gb|AAD39331.1|AC007258_20 pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|21593256|gb|AAM65205.1| pyruvate dehydrogenase e1 alpha subunit, putative [Arabidopsis thaliana] gi|24030439|gb|AAN41374.1| putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis thaliana] gi|332195517|gb|AEE33638.1| pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
TAIR|locus:2025966389 E1 ALPHA "pyruvate dehydrogena 0.961 0.974 0.840 3.1e-177
TAIR|locus:2032367393 IAR4 "IAA-CONJUGATE-RESISTANT 0.959 0.961 0.823 2.5e-175
DICTYBASE|DDB_G0292994377 pdhA "pyruvate dehydrogenase E 0.829 0.867 0.6 2e-104
POMBASE|SPAC26F1.03409 pda1 "pyruvate dehydrogenase e 0.880 0.848 0.548 8.2e-99
ZFIN|ZDB-GENE-040426-2719393 pdha1a "pyruvate dehydrogenase 0.845 0.847 0.547 9.4e-98
SGD|S000000980420 PDA1 "E1 alpha subunit of the 0.865 0.811 0.547 2.5e-97
WB|WBGene00011510414 pdha-1 [Caenorhabditis elegans 0.923 0.879 0.528 8.4e-97
CGD|CAL0001531401 PDA1 [Candida albicans (taxid: 0.870 0.855 0.524 2.9e-96
UNIPROTKB|P52900363 PDHA "Pyruvate dehydrogenase E 0.847 0.920 0.540 4.7e-96
ASPGD|ASPL0000028703405 pdhB [Emericella nidulans (tax 0.868 0.844 0.502 1.2e-95
TAIR|locus:2025966 E1 ALPHA "pyruvate dehydrogenase complex E1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
 Identities = 321/382 (84%), Positives = 356/382 (93%)

Query:    14 TNIL-KPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMA 72
             +NI+ +P + +F   R ISTDTTP+TIETS+PFT+H C+ PSRSVE++ +ELL FFR MA
Sbjct:    10 SNIITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESSSQELLDFFRTMA 67

Query:    73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132
              MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITAYRDHC FLGRGG
Sbjct:    68 LMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITAYRDHCIFLGRGG 127

Query:   133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192
             +L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGCG+AFAQKY+K+E
Sbjct:   128 SLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKEE 187

Query:   193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252
              VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD
Sbjct:   188 AVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 247

Query:   253 YVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312
             YVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct:   248 YVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 307

Query:   313 GVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNV 372
             GVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+ PMPEPSELFTNV
Sbjct:   308 GVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNV 367

Query:   373 YVKGYGVEVFGADRKEVRSALP 394
             YVKG+G E FG DRKEV+++LP
Sbjct:   368 YVKGFGTESFGPDRKEVKASLP 389
GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006096 "glycolysis" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032367 IAR4 "IAA-CONJUGATE-RESISTANT 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292994 pdhA "pyruvate dehydrogenase E1 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC26F1.03 pda1 "pyruvate dehydrogenase e1 component alpha subunit Pda1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2719 pdha1a "pyruvate dehydrogenase (lipoamide) alpha 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
SGD|S000000980 PDA1 "E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
WB|WBGene00011510 pdha-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
CGD|CAL0001531 PDA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P52900 PDHA "Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial" [Sminthopsis macroura (taxid:9302)] Back     alignment and assigned GO terms
ASPGD|ASPL0000028703 pdhB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P26267ODPA_ASCSU1, ., 2, ., 4, ., 10.50410.89590.8914N/Ano
Q6Z5N4ODPA1_ORYSJ1, ., 2, ., 4, ., 10.83370.94670.9564yesno
P52899ODPA_CAEEL1, ., 2, ., 4, ., 10.52120.94160.9345yesno
Q654V6ODPA2_ORYSJ1, ., 2, ., 4, ., 10.77920.93140.9221nono
P29803ODPAT_HUMAN1, ., 2, ., 4, ., 10.54160.84510.8582yesno
P26268ODPT_ASCSU1, ., 2, ., 4, ., 10.50540.89840.9053N/Ano
P29804ODPA_PIG1, ., 2, ., 4, ., 10.49470.92380.9357yesno
P35486ODPA_MOUSE1, ., 2, ., 4, ., 10.49470.92380.9333yesno
Q54C70ODPA_DICDI1, ., 2, ., 4, ., 10.60.82990.8673yesno
O13366ODPA_KLULA1, ., 2, ., 4, ., 10.54700.84510.8082yesno
Q8H1Y0ODPA2_ARATH1, ., 2, ., 4, ., 10.81060.99230.9949nono
P52900ODPA_SMIMA1, ., 2, ., 4, ., 10.54000.84770.9201N/Ano
P52901ODPA1_ARATH1, ., 2, ., 4, ., 10.83240.98731.0yesno
P52902ODPA_PEA1, ., 2, ., 4, ., 10.85940.95430.9471N/Ano
P52903ODPA_SOLTU1, ., 2, ., 4, ., 10.80670.98220.9897N/Ano
P16387ODPA_YEAST1, ., 2, ., 4, ., 10.54490.85530.8023yesno
Q10489ODPA_SCHPO1, ., 2, ., 4, ., 10.55520.85780.8264yesno
A7MB35ODPA_BOVIN1, ., 2, ., 4, ., 10.50.92380.9333yesno
P26284ODPA_RAT1, ., 2, ., 4, ., 10.50.90860.9179yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.998
4th Layer1.2.4.10.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
PLN02269362 PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp 0.0
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 1e-163
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 1e-153
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 1e-145
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 1e-136
PLN02374433 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl 4e-86
CHL00149341 CHL00149, odpA, pyruvate dehydrogenase E1 componen 5e-81
TIGR03181341 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E 1e-65
TIGR00239 929 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas 2e-07
cd02007195 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam 4e-04
cd02012255 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami 5e-04
COG0567 906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 0.002
COG3959243 COG3959, COG3959, Transketolase, N-terminal subuni 0.002
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information 
 Score =  787 bits (2035), Expect = 0.0
 Identities = 308/362 (85%), Positives = 334/362 (92%)

Query: 33  DTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
            T P+TIET VPF  H C+ PSR+VET+ +EL+ FFR M  MRRMEIAADSLYKAKL+RG
Sbjct: 1   STDPITIETPVPFKGHLCDPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRG 60

Query: 93  FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
           FCHLYDGQEAVA+GMEA ITK+D+IITAYRDHCT LGRGGT+LEVF+ELMGRKDGCS GK
Sbjct: 61  FCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGK 120

Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
           GGSMHFYKKD+ FYGGHGIVGAQ+PLG GLAFAQKY+K+E V FALYGDGAANQGQLFEA
Sbjct: 121 GGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180

Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
           LNIAALWDLP I VCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LAVKQACK
Sbjct: 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACK 240

Query: 273 FAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332
           FAKEHAL NGP++LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER+RKL+LAH+
Sbjct: 241 FAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHE 300

Query: 333 LATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSA 392
           LATE ELKDIEKE+RKEVDDA+AKAKESPMP+PSELFTNVYVKG GVE +GADRKEVR  
Sbjct: 301 LATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVKGLGVESYGADRKEVRVV 360

Query: 393 LP 394
           LP
Sbjct: 361 LP 362

Length = 362
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG0225394 consensus Pyruvate dehydrogenase E1, alpha subunit 100.0
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 100.0
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 100.0
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 100.0
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 100.0
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 100.0
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 100.0
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 100.0
KOG1182432 consensus Branched chain alpha-keto acid dehydroge 100.0
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 100.0
PRK12754 663 transketolase; Reviewed 99.97
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 99.97
KOG0450 1017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 99.97
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 99.97
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 99.96
PRK12753 663 transketolase; Reviewed 99.96
PTZ00089 661 transketolase; Provisional 99.96
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 99.95
PLN02790 654 transketolase 99.95
PRK05899 624 transketolase; Reviewed 99.95
COG0567 906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 99.95
TIGR00204 617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 99.95
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.95
cd02017386 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam 99.95
KOG0451 913 consensus Predicted 2-oxoglutarate dehydrogenase, 99.93
PLN02234 641 1-deoxy-D-xylulose-5-phosphate synthase 99.92
PLN02582 677 1-deoxy-D-xylulose-5-phosphate synthase 99.92
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.92
COG0021 663 TktA Transketolase [Carbohydrate transport and met 99.91
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.9
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 99.89
KOG0523 632 consensus Transketolase [Carbohydrate transport an 99.89
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 99.86
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 99.86
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 99.84
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 99.78
PF13292270 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn 99.71
COG1154 627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 99.7
PLN02225 701 1-deoxy-D-xylulose-5-phosphate synthase 99.68
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 99.67
PRK05261 785 putative phosphoketolase; Provisional 99.66
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 99.65
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 99.65
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 99.63
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 99.61
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 99.6
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 99.58
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 99.57
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 99.57
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 99.55
PRK06163202 hypothetical protein; Provisional 99.55
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 99.54
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 99.53
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 99.53
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 99.52
PRK07524535 hypothetical protein; Provisional 99.51
cd02005183 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, 99.48
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 99.48
COG0028550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 99.46
PRK08327569 acetolactate synthase catalytic subunit; Validated 99.45
PRK06154565 hypothetical protein; Provisional 99.45
PRK12474518 hypothetical protein; Provisional 99.45
PRK07092530 benzoylformate decarboxylase; Reviewed 99.44
PRK08266542 hypothetical protein; Provisional 99.44
PRK06725570 acetolactate synthase 3 catalytic subunit; Validat 99.44
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 99.43
PRK06546578 pyruvate dehydrogenase; Provisional 99.42
TIGR01504588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 99.42
PRK07525588 sulfoacetaldehyde acetyltransferase; Validated 99.41
PRK07586514 hypothetical protein; Validated 99.41
PRK07979574 acetolactate synthase 3 catalytic subunit; Validat 99.4
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 99.4
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 99.4
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 99.39
PRK09124574 pyruvate dehydrogenase; Provisional 99.39
PRK05858542 hypothetical protein; Provisional 99.39
PRK07064544 hypothetical protein; Provisional 99.38
PRK06112578 acetolactate synthase catalytic subunit; Validated 99.38
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 99.38
PRK11269591 glyoxylate carboligase; Provisional 99.37
CHL00099585 ilvB acetohydroxyacid synthase large subunit 99.37
PRK07418616 acetolactate synthase 3 catalytic subunit; Reviewe 99.37
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 99.37
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 99.37
TIGR02720575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 99.36
TIGR03457579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 99.36
PLN02573578 pyruvate decarboxylase 99.35
PRK08979572 acetolactate synthase 3 catalytic subunit; Validat 99.35
TIGR03393539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 99.35
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 99.35
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 99.35
PRK08273597 thiamine pyrophosphate protein; Provisional 99.35
PRK08199557 thiamine pyrophosphate protein; Validated 99.35
PRK06457549 pyruvate dehydrogenase; Provisional 99.35
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 99.33
PRK06456572 acetolactate synthase catalytic subunit; Reviewed 99.33
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 99.33
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 99.33
PRK08617552 acetolactate synthase; Reviewed 99.33
PLN02470585 acetolactate synthase 99.33
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 99.32
PRK08155564 acetolactate synthase catalytic subunit; Validated 99.32
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 99.32
PRK08611576 pyruvate oxidase; Provisional 99.32
PRK08322547 acetolactate synthase; Reviewed 99.32
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 99.3
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 99.29
PRK05778301 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.29
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 99.28
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 99.26
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 99.26
TIGR03394535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 99.25
PRK07282566 acetolactate synthase catalytic subunit; Reviewed 99.25
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 99.25
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.22
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.22
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 99.2
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.2
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.2
PRK07449568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 99.2
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 99.18
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 98.91
COG3961557 Pyruvate decarboxylase and related thiamine pyroph 98.84
KOG1185571 consensus Thiamine pyrophosphate-requiring enzyme 98.81
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 98.79
COG3960592 Glyoxylate carboligase [General function predictio 98.62
KOG4166675 consensus Thiamine pyrophosphate-requiring enzyme 98.55
KOG1184561 consensus Thiamine pyrophosphate-requiring enzyme 98.46
COG3962617 Acetolactate synthase [Amino acid transport and me 98.31
PF09364379 XFP_N: XFP N-terminal domain; InterPro: IPR018970 98.11
COG1013294 PorB Pyruvate:ferredoxin oxidoreductase and relate 97.89
COG3957 793 Phosphoketolase [Carbohydrate transport and metabo 96.86
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 96.8
cd03377365 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), 96.71
COG1165566 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car 96.15
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 95.4
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 94.42
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 93.99
PRK08659 376 2-oxoglutarate ferredoxin oxidoreductase subunit a 93.66
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 93.64
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 93.25
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 92.47
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 92.39
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 91.73
TIGR021761165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 91.47
PRK09627 375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 90.87
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 90.77
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 90.23
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 89.96
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 89.35
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 88.93
PRK08366 390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 88.84
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 88.32
PTZ00089661 transketolase; Provisional 86.78
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 86.64
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 86.54
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 85.71
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 85.38
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 85.31
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 85.26
PRK08367 394 porA pyruvate ferredoxin oxidoreductase subunit al 83.29
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 82.48
PRK08611 576 pyruvate oxidase; Provisional 82.35
TIGR03297 361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 82.19
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 81.96
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 81.95
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 81.8
PRK07524 535 hypothetical protein; Provisional 81.76
PRK08266 542 hypothetical protein; Provisional 81.49
PRK12753663 transketolase; Reviewed 81.25
PRK12754663 transketolase; Reviewed 81.13
PRK06457 549 pyruvate dehydrogenase; Provisional 81.11
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 80.34
PLN02790654 transketolase 80.14
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-105  Score=761.78  Aligned_cols=375  Identities=64%  Similarity=1.049  Sum_probs=354.8

Q ss_pred             cccccccccccCCCCCC--CCCceeeeCCCCccceecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016175           16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG   92 (394)
Q Consensus        16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~g   92 (394)
                      ++.++..+..+++...+  ...+++++.+ ||+.|++++ |++...+|+++++++|++|+++|+||..++++|++|+|+|
T Consensus        11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG   89 (394)
T KOG0225|consen   11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG   89 (394)
T ss_pred             hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence            55555554322222222  3455666665 999999999 9999999999999999999999999999999999999999


Q ss_pred             ccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCc
Q 016175           93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV  172 (394)
Q Consensus        93 f~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~l  172 (394)
                      |||+|.||||++||+.++|++.|.++++||||++.+.||.++.++|+||+|+.+||++|+|||||++.+  +|+|++|+|
T Consensus        90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV  167 (394)
T KOG0225|consen   90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV  167 (394)
T ss_pred             eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999987  599999999


Q ss_pred             cchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcC
Q 016175          173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD  252 (394)
Q Consensus       173 G~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~  252 (394)
                      |+|+|+++|+|+|+||++.+.++++|+|||++||||+|||+|||++|+||+||||+||+|||+|+.++.+..++|+++|.
T Consensus       168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~  247 (394)
T KOG0225|consen  168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD  247 (394)
T ss_pred             ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHc
Q 016175          253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH  331 (394)
Q Consensus       253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~  331 (394)
                      |+||++|||+|+.+|++|.++|++++++ +||+++|+.|||++|||++||+++||++||+++.|++||||..++++|++.
T Consensus       248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~  327 (394)
T KOG0225|consen  248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL  327 (394)
T ss_pred             CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccCCCCcccccCccccccccC
Q 016175          332 DLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSAL  393 (394)
Q Consensus       332 g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~  393 (394)
                      +++|++|||+|+++++++||+++++|+++|+|++++||+|||+++++.+++|+++++.++.+
T Consensus       328 ~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~~~~~~~~g~~~~~~~~~~  389 (394)
T KOG0225|consen  328 GLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVKGTGFEIRGGRIDEEKWQF  389 (394)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhccCCCccccCcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999988877654

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>COG3960 Glyoxylate carboligase [General function prediction only] Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3962 Acetolactate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes Back     alignment and domain information
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
3exf_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 8e-97
3exe_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-96
3exh_C382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-96
3exi_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-96
2ozl_A365 Human Pyruvate Dehydrogenase S264e Variant Length = 3e-96
1ni4_A365 Human Pyruvate Dehydrogenase Length = 365 5e-91
3duf_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 5e-32
1w85_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1 5e-32
1dtw_A400 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 7e-32
3dva_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 9e-32
1w88_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1( 1e-31
2bff_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-31
2j9f_A400 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-31
1x7y_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-31
1x7w_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-31
1x7z_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-31
1x7x_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-31
1x80_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-31
2bfe_A400 Reactivity Modulation Of Human Branched-Chain Alpha 6e-31
2bfb_A400 Reactivity Modulation Of Human Branched-Chain Alpha 8e-31
1olu_A400 Roles Of His291-Alpha And His146-Beta' In The Reduc 1e-30
1v16_A400 Crosstalk Between Cofactor Binding And The Phosphor 3e-30
1um9_A367 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 6e-30
2bfc_A400 Reactivity Modulation Of Human Branched-Chain Alpha 7e-30
1v11_A400 Crosstalk Between Cofactor Binding And The Phosphor 8e-30
1v1m_A400 Crosstalk Between Cofactor Binding And The Phosphor 2e-29
2bfd_A400 Reactivity Modulation Of Human Branched-Chain Alpha 3e-29
2bp7_A410 New Crystal Form Of The Pseudomonas Putida Branched 6e-23
1qs0_A407 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 7e-22
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure 
Iteration: 1

 Score =  350 bits (898), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 183/337 (54%), Positives = 237/337 (70%), Gaps = 3/337 (0%)
Query: 51  EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
           E P  +   T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA  +G+EAG
Sbjct: 40  EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 99
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
           I   D +ITAYR H     RG ++ E+ +EL GRK GC+ GKGGSMH Y K+  FYGG+G
Sbjct: 100 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 157
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
           IVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 158 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
            YGMGTA  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ 
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 277
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
           TYRYHGHSMSDPG  YRTR+EI  VR + DPI  ++  ++  +LA+ +ELK+I+ EVRKE
Sbjct: 278 TYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKE 337
Query: 350 VDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR 386
           ++DA   A   P P   EL  ++Y      EV GA++
Sbjct: 338 IEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQ 374
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 Back     alignment and structure
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 Back     alignment and structure
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 Back     alignment and structure
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 Back     alignment and structure
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 Back     alignment and structure
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 Back     alignment and structure
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 0.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 1e-112
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 2e-98
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 1e-97
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 5e-95
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
 Score =  556 bits (1435), Expect = 0.0
 Identities = 184/355 (51%), Positives = 240/355 (67%), Gaps = 5/355 (1%)

Query: 34  TTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
               T E       H+ E  P  +   T ++ L ++R M T+RRME+ AD LYK K++RG
Sbjct: 6   ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 64

Query: 93  FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
           FCHL DGQEA  +G+EAGI   D +ITAYR H     RG ++ E+ +EL GRK GC+ GK
Sbjct: 65  FCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGK 124

Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
           GGSMH Y K   FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA
Sbjct: 125 GGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 182

Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
            N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +
Sbjct: 183 YNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242

Query: 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331
           FA  +     GP+++E+ TYRYHGH MSDPG +YRTR+EI  VR + DPI  ++  ++  
Sbjct: 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNS 302

Query: 332 DLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR 386
           +LA+ +ELK+I+ EVRKE++DA   A   P P   EL  ++Y      EV GA++
Sbjct: 303 NLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQ 357
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 100.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 100.0
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 100.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 100.0
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 99.97
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 99.97
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 99.97
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 99.97
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 99.97
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 99.96
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 99.96
2o1x_A 629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 99.96
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 99.96
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 99.96
3uk1_A 711 Transketolase; structural genomics, seattle struct 99.96
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 99.96
3l84_A 632 Transketolase; TKT, structural genomics, center fo 99.95
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 99.92
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 99.84
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 99.67
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 99.57
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 99.54
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 99.51
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 99.5
2vk8_A563 Pyruvate decarboxylase isozyme 1; asymmetric activ 99.5
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 99.49
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 99.48
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 99.47
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 99.47
2vbi_A566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 99.47
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 99.46
1ovm_A552 Indole-3-pyruvate decarboxylase; thiamine diphosph 99.44
2vbf_A570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 99.44
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 99.43
2wvg_A568 PDC, pyruvate decarboxylase; thiamine diphosphate, 99.42
2nxw_A565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 99.42
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 99.41
2q28_A564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 99.4
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.33
2x7j_A604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 99.31
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.21
2c42_A1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 98.6
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 89.79
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 87.1
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 86.28
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 86.22
1yd7_A 395 2-keto acid:ferredoxin oxidoreductase subunit alph 86.2
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 86.08
3uk1_A711 Transketolase; structural genomics, seattle struct 86.06
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 85.22
3l84_A632 Transketolase; TKT, structural genomics, center fo 84.85
1gpu_A680 Transketolase; transferase(ketone residues); HET: 84.4
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 84.19
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 84.19
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 84.1
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 83.43
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 83.12
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 81.26
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 80.77
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 80.31
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 80.24
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 80.16
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
Probab=100.00  E-value=9e-81  Score=623.58  Aligned_cols=349  Identities=53%  Similarity=0.917  Sum_probs=329.8

Q ss_pred             CCceeeeCCCCccceecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC
Q 016175           34 TTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT  112 (394)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~  112 (394)
                      .++.||+++ ||++|+++. |+..+.+|+++++++|+.|+++|+||+++..++++|+|.||+|++.|||++++|+..+|+
T Consensus         6 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~   84 (365)
T 2ozl_A            6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN   84 (365)
T ss_dssp             CSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred             ccccccccC-ccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC
Confidence            345788876 999999986 777788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCC
Q 016175          113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE  192 (394)
Q Consensus       113 ~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~  192 (394)
                      ++|+++++||+|++++.+|.++..+|+|++|+.++++.|++|+||++++  ++++++|+||+++|+|+|+|+|.++++.+
T Consensus        85 ~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~~--~~~~~~g~~G~~lp~A~G~A~A~~~~~~~  162 (365)
T 2ozl_A           85 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKD  162 (365)
T ss_dssp             TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCcc--ccCCCcchhhhhhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999764  88999999999999999999999999999


Q ss_pred             CeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcCcccEEEEeCCCHHHHHHHHH
Q 016175          193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK  272 (394)
Q Consensus       193 ~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~~~~~~VDG~D~~av~~a~~  272 (394)
                      ++|||++|||++++|.+||+||+|+.|+||+||||+||+|+|+++..+....++|++++..+|+++|||||+++|++|++
T Consensus       163 ~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~a~~  242 (365)
T 2ozl_A          163 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR  242 (365)
T ss_dssp             CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHH
T ss_pred             ceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877766667888887569999999999999999999


Q ss_pred             HHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 016175          273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD  351 (394)
Q Consensus       273 ~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~  351 (394)
                      +|++++|+ +||+|||+.|||++|||++||+.+||+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|+
T Consensus       243 ~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~  322 (365)
T 2ozl_A          243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIE  322 (365)
T ss_dssp             HHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999998 99999999999999999999988899999999998668999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccccccccccCCCCcccccCc
Q 016175          352 DAIAKAKESPMPEPSELFTNVYVKGYGVEVFGAD  385 (394)
Q Consensus       352 ~a~~~A~~~~~p~~~~~~~~vy~~~~~~~~~~~~  385 (394)
                      +++++|+++|.|+++++|++||++.++..++++.
T Consensus       323 ~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~  356 (365)
T 2ozl_A          323 DAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN  356 (365)
T ss_dssp             HHHHHHHHSCCCCGGGTTCSSSSSCCCEEEECSB
T ss_pred             HHHHHHHhCCCCCHHHHHhhhcCCCChhhhcccc
Confidence            9999999999999999999999987776667664
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d2ozla1361 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de 2e-87
d2bfda1395 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid 1e-72
d1umda_362 c.36.1.11 (A:) Branched-chain alpha-keto acid dehy 2e-72
d1w85a_365 c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd 6e-72
d1qs0a_407 c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B 2e-67
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  267 bits (682), Expect = 2e-87
 Identities = 182/345 (52%), Positives = 238/345 (68%), Gaps = 4/345 (1%)

Query: 44  PFTSHQC-EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEA 102
               H+  E P  +   T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA
Sbjct: 11  KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEA 70

Query: 103 VAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD 162
             +G+EAGI   D +ITAYR H     RG ++ E+ +EL GRK GC+ GKGGSMH Y K 
Sbjct: 71  CCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK- 129

Query: 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP 222
             FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP
Sbjct: 130 -NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 188

Query: 223 AILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKN 281
            I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     
Sbjct: 189 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 248

Query: 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKD 341
           GP+++E+ TYRYHGH MSDPG +YRTR+EI  VR + DPI  ++  ++  +LA+ +ELK+
Sbjct: 249 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 308

Query: 342 IEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR 386
           I+ EVRKE++DA   A   P P   EL  ++Y      EV GA++
Sbjct: 309 IDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQ 353
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 100.0
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 100.0
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 100.0
d2r8oa2331 Transketolase (TK), PP module {Escherichia coli [T 99.95
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 99.95
d1gpua1335 Transketolase (TK), PP module {Baker's yeast (Sacc 99.94
d1itza1338 Transketolase (TK), PP module {Maize (Zea mays) [T 99.94
d2ieaa2415 Pyruvate dehydrogenase E1 component, PP module {Es 99.78
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 99.7
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 99.64
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 99.61
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 99.57
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 99.56
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 99.49
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 99.47
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 99.47
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 99.44
d1pvda3196 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 99.41
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 99.4
d2c42a2447 Pyruvate-ferredoxin oxidoreductase, PFOR, domains 97.55
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 91.83
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 91.15
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 90.76
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 90.28
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 90.01
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 89.31
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 89.01
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 88.61
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 88.48
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 88.13
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 87.09
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 86.05
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 84.95
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 84.22
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-85  Score=651.46  Aligned_cols=349  Identities=53%  Similarity=0.917  Sum_probs=333.7

Q ss_pred             CCceeeeCCCCccceecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC
Q 016175           34 TTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT  112 (394)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~  112 (394)
                      +++.||+++ +++.|+++. |+..+.||+|+++++||.|+++|.||+++..++++|+|.||+|+++||||++||++.+|+
T Consensus         2 ~~~~~~~~~-~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~   80 (361)
T d2ozla1           2 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN   80 (361)
T ss_dssp             CSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred             CCCceeecc-cccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCC
Confidence            567899998 899999986 778889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCC
Q 016175          113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE  192 (394)
Q Consensus       113 ~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~  192 (394)
                      ++|+++++||+|+++|++|.++..+|+|++|+.+++++|++|+||.+.+  |+++.+++||.++|+|+|+|+|.|+++.+
T Consensus        81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~--~~~~~~~ivg~~~p~A~G~A~a~k~~~~~  158 (361)
T d2ozla1          81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKD  158 (361)
T ss_dssp             TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTCC
T ss_pred             ccCEecccccchheeeeecccchhhhhhccCCccccccccccccccccc--cccCccccccccchhHHHHHHHhhhccCC
Confidence            9999999999999999999999999999999999999999999998764  78999999999999999999999999999


Q ss_pred             CeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcCcccEEEEeCCCHHHHHHHHH
Q 016175          193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK  272 (394)
Q Consensus       193 ~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~~~~~~VDG~D~~av~~a~~  272 (394)
                      ++|+|++|||+++||.|||+||+|+.|+||+||||+||+|+++|+.+.++...+.+.++.++++++|||+|+.+|+++++
T Consensus       159 ~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~  238 (361)
T d2ozla1         159 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR  238 (361)
T ss_dssp             CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHH
T ss_pred             CeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhccccccccccccccceEEeccCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887777777777669999999999999999999


Q ss_pred             HHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 016175          273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD  351 (394)
Q Consensus       273 ~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~  351 (394)
                      +|++++|+ +||+|||+.|||++||+.+|++..||+++|++.|+.++|||.+++++|+++|++|++++++|+++++++|+
T Consensus       239 ~A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~  318 (361)
T d2ozla1         239 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIE  318 (361)
T ss_dssp             HHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCEEEEEeeecCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999 89999999999999999999988899999999987668999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccccccccccCCCCcccccCc
Q 016175          352 DAIAKAKESPMPEPSELFTNVYVKGYGVEVFGAD  385 (394)
Q Consensus       352 ~a~~~A~~~~~p~~~~~~~~vy~~~~~~~~~~~~  385 (394)
                      +|+++|+++|.|+++++|++||++.++.++++..
T Consensus       319 ~A~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~  352 (361)
T d2ozla1         319 DAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN  352 (361)
T ss_dssp             HHHHHHHHSCCCCGGGTTCSSSSSCCCEEEECSB
T ss_pred             HHHHHHHhCCCcCHHHHHhcccCCCChHHHHhHH
Confidence            9999999999999999999999999888877654
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure