Citrus Sinensis ID: 016187
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | 2.2.26 [Sep-21-2011] | |||||||
| Q7YR70 | 435 | Angio-associated migrator | yes | no | 0.855 | 0.774 | 0.360 | 1e-59 | |
| Q3SZK1 | 434 | Angio-associated migrator | yes | no | 0.855 | 0.776 | 0.360 | 2e-59 | |
| Q5RCG7 | 434 | Angio-associated migrator | yes | no | 0.855 | 0.776 | 0.360 | 2e-59 | |
| Q13685 | 434 | Angio-associated migrator | yes | no | 0.855 | 0.776 | 0.360 | 2e-59 | |
| O13982 | 399 | Uncharacterized WD repeat | yes | no | 0.961 | 0.949 | 0.304 | 4e-52 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | yes | no | 0.835 | 0.195 | 0.304 | 3e-43 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.840 | 0.244 | 0.330 | 9e-42 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.837 | 0.216 | 0.319 | 6e-41 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.835 | 0.261 | 0.3 | 3e-36 | |
| P0CS42 | 433 | Nuclear distribution prot | no | no | 0.687 | 0.625 | 0.309 | 2e-30 |
| >sp|Q7YR70|AAMP_CANFA Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 181/355 (50%), Gaps = 18/355 (5%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
+ E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKD
Sbjct: 77 SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 136
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
SV+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+
Sbjct: 137 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 194
Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
D WMW F G TCG PDGK G +D T+R+W+ K G IHV
Sbjct: 195 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 253
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE------ 282
++G H LTC+ + D +L L+GS D +V+ TTGKVV T + +
Sbjct: 254 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKVVGVFRPETVASQPNVGEG 313
Query: 283 ---------CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY 333
+GF P AA G +D L I+DL R C H+ G+ L+W +
Sbjct: 314 EESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAV 373
Query: 334 VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 374 VYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 428
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Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway. Canis familiaris (taxid: 9615) |
| >sp|Q3SZK1|AAMP_BOVIN Angio-associated migratory cell protein OS=Bos taurus GN=AAMP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 182/355 (51%), Gaps = 18/355 (5%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
+ E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKD
Sbjct: 76 SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
SV+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193
Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
D WMW F G TCG PDGK G +D T+R+W+ K G +IHV
Sbjct: 194 ADGNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHV 252
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE------ 282
++G H LTC+ + D +L L+GS D +V+ TTGKVV T + +
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEG 312
Query: 283 ---------CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY 333
+GF P AA G +D L I+DL R C H+ G+ L+W +
Sbjct: 313 EESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAV 372
Query: 334 VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 373 VYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
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Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway. Bos taurus (taxid: 9913) |
| >sp|Q5RCG7|AAMP_PONAB Angio-associated migratory cell protein OS=Pongo abelii GN=AAMP PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 181/355 (50%), Gaps = 18/355 (5%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
+ E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKD
Sbjct: 76 SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
SV+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193
Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
D WMW F G TCG PDGK G +D T+R+W+ K G IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE------ 282
++G H LTC+ + D +L L+GS D +V+ TTGKVV T + +
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEG 312
Query: 283 ---------CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY 333
+GF P AA G +D L I+DL R C H+ G+ L+W +
Sbjct: 313 EESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAV 372
Query: 334 VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 373 VYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
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Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway. Pongo abelii (taxid: 9601) |
| >sp|Q13685|AAMP_HUMAN Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 181/355 (50%), Gaps = 18/355 (5%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
+ E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKD
Sbjct: 76 SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
SV+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193
Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
D WMW F G TCG PDGK G +D T+R+W+ K G IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE------ 282
++G H LTC+ + D +L L+GS D +V+ TTGKVV T + +
Sbjct: 253 LKGTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEG 312
Query: 283 ---------CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY 333
+GF P AA G +D L I+DL R C H+ G+ L+W +
Sbjct: 313 EESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAV 372
Query: 334 VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 373 VYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
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Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway. Homo sapiens (taxid: 9606) |
| >sp|O13982|YEC8_SCHPO Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25H1.08c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 202/394 (51%), Gaps = 15/394 (3%)
Query: 10 EDDQREVFLDESDIIHEVTVDDEDLPDV----DDDDDPGSDAENTEQPDDSTHIFSGHSD 65
E++ +E+++ E+++ EV D++ L D D+ + +D N D S F H D
Sbjct: 4 EEENQELYIAENEV-EEVIKDNDKLMDQGVTEDEAEQEQNDTMNNMVMDMSVQGFFEHKD 62
Query: 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
V+SV+ +P + L A+GGGDD G+ W I G+ ++ GHKDS+ ++ +S DG +A+G
Sbjct: 63 SVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGHKDSIVAIDWSFDGTYIATG 122
Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
G+D V++W S+G T + W+SWHP+G + AG D ++WMW+ +
Sbjct: 123 GMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHPKGLFLAAGCNDGSIWMWSLPSGKVVQ 182
Query: 186 MFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSG--------ENIHVIRGHPYH 235
+ GH + V G F P GK + T D TL VWNP +G ++ G+
Sbjct: 183 VMYGHTAPVNAGKFIPPGVGKRLATVDDSGTLIVWNPATGAPECRMSSDDHRFDPGNEET 242
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295
G T +A+ + G G V +VNI + +++SL + T+S+E I + P A
Sbjct: 243 AAGWTSFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEAIALCTALPICAC 302
Query: 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
S+D + ++D R + HE V +L + Y++T C D +R WD SG +
Sbjct: 303 ASVDGTVALYDSASLKFRKSLPHEQAVIDCKFLPNTPYLLTACADCVIRKWDVRSGQLLG 362
Query: 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
++GH++ I ++++ +V+ S D VF+
Sbjct: 363 EYTGHQEPILCMAITPDGKRVVTGSDDTELLVFD 396
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats.
Identities = 102/335 (30%), Positives = 167/335 (49%), Gaps = 6/335 (1%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH D VYSV+ SP D +A+GG D W+ + G I GH+ +V+++ FS DG
Sbjct: 1109 LNGHEDAVYSVSFSP-DGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDG 1167
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+ LAS D +++WD +SG L TL G GV V + P G + AGSED TV +W+
Sbjct: 1168 KNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQ 1227
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L +GH V F+PDGKT+ + S D T+++W G+ + ++G H + +
Sbjct: 1228 DGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKG---HNDSV 1284
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299
+ S+D S S+D ++ + N G + + H+ + + F S A+ S+D
Sbjct: 1285 WDVNFSSDGKAIASASRDNTIKLWN-RHGIELETFTGHSGGVYAVNFLPDSNIIASASLD 1343
Query: 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359
+ +W P GV + +L + T DG +++W S G ++T G
Sbjct: 1344 NTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPG 1403
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
++ AI IS + D + S + D T +++ + D K
Sbjct: 1404 NK-AIYGISFTPQGDLIASANADKTVKIWRVRDGK 1437
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 168/336 (50%), Gaps = 5/336 (1%)
Query: 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
T GH V+SVA SP D VA+G D W G ++GH V S+AFS
Sbjct: 876 TQTLEGHGGSVWSVAFSP-DRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFS 934
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DGQ +ASG D ++IWD +SG TLEG G V V++ P G V +GS D T+ +W
Sbjct: 935 PDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW 994
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
+ GHG SV F+PDG+ + +GSDD T+++W+ SG + GH
Sbjct: 995 DTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWV 1054
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296
+ + S D SGS D ++ + + +G +L H DS+ + FS A+G
Sbjct: 1055 QSVV---FSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASG 1111
Query: 297 SMDQKLIIWDLQHSLPRSTCDHEDG-VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
S+D + IWD T + G V + + + V +G +DG +++WD+ SG C +
Sbjct: 1112 SIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQ 1171
Query: 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
T GH +Q+++ S + S S D T ++++ A
Sbjct: 1172 TLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTA 1207
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 173/335 (51%), Gaps = 5/335 (1%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+IF GH+ V SV S +D ++A+G D W I+ G+ +QGH V S+ FS
Sbjct: 1026 YIFQGHTSCVRSVVFS-SDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSP 1084
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DG +LASGG D +V++WD SSGN TL+G V ++ + P G + GS D V +W+
Sbjct: 1085 DGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWD 1144
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
L GH + V F+PDG T+ +GS D T+R+W+ S + +++++G HT
Sbjct: 1145 ISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQG---HTS 1201
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
+ + + D + SGS D +V + I + K + + HT + + F+ A+GS
Sbjct: 1202 WVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGS 1261
Query: 298 MDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356
D+ + +WD+ S T H + V + + + +G D VR+W+ S C+ T
Sbjct: 1262 SDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHT 1321
Query: 357 FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
F GH + +++ S L S S D T R++ I+
Sbjct: 1322 FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSIS 1356
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 171/370 (46%), Gaps = 41/370 (11%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH EV+SVA P TL A+ GD W I G + GH D V +AFS DG
Sbjct: 722 LTGHEHEVFSVAFHPDGETL-ASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDG 780
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LAS D +++WD S G TL+ G V V++ G + +GS D T+ +WN
Sbjct: 781 NTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYH 840
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH------- 232
L + GH +SV ++PD K + +GS D T+++W+ ++ I + GH
Sbjct: 841 TGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSV 900
Query: 233 PYHTEGLTCLTISADSTLAL--------------------------------SGSKDGSV 260
+ +G T +S D ++ L SGS D +V
Sbjct: 901 AFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTV 960
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHE 319
+ + TGK +SSL HTD I I FS S A+ S D + +W++ + +H
Sbjct: 961 KLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHT 1020
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379
D V +++ K + TG D V++W+ +G C++T S H D I ++ S L S
Sbjct: 1021 DWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASA 1080
Query: 380 SLDGTARVFE 389
S D + R+++
Sbjct: 1081 SADQSVRLWD 1090
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 20/291 (6%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ H+ V+ LAF LLAS D V++WD +G+++ TL+G V V + PRG
Sbjct: 101 LASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGG 160
Query: 163 IVLAGSEDSTVWMWN-ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
++ S D T+ +W+ A++ + GH SV+ F PDG+T+ + S D T+RVW
Sbjct: 161 LMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVS 220
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281
SG I GH E + S D +S S D + + + +TG+ L H +
Sbjct: 221 SGYCIKTFSGH---AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVV 277
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341
EC F+ + + A + L+ PR T GV Y TG D
Sbjct: 278 ECAVFAPVNAYPAIRELA------GLKPPAPRDTRAKSPGV----------YAATGSRDK 321
Query: 342 KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392
+++WD+LSG C+RT GH + I+A+ +L+S S D T +V+++A+
Sbjct: 322 TIKLWDALSGQCLRTLVGHDNWIRALVFHPSGKYLLSASDDKTIKVWDLAN 372
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| 449503766 | 392 | PREDICTED: vegetative incompatibility pr | 0.977 | 0.982 | 0.757 | 1e-175 | |
| 449441201 | 392 | PREDICTED: vegetative incompatibility pr | 0.977 | 0.982 | 0.757 | 1e-175 | |
| 225444924 | 391 | PREDICTED: angio-associated migratory ce | 0.992 | 1.0 | 0.771 | 1e-171 | |
| 297738669 | 393 | unnamed protein product [Vitis vinifera] | 0.992 | 0.994 | 0.767 | 1e-169 | |
| 225460494 | 391 | PREDICTED: angio-associated migratory ce | 0.992 | 1.0 | 0.756 | 1e-168 | |
| 147771302 | 391 | hypothetical protein VITISV_007962 [Viti | 0.992 | 1.0 | 0.756 | 1e-168 | |
| 224135435 | 378 | predicted protein [Populus trichocarpa] | 0.956 | 0.997 | 0.750 | 1e-166 | |
| 224146457 | 390 | predicted protein [Populus trichocarpa] | 0.982 | 0.992 | 0.735 | 1e-165 | |
| 152926156 | 408 | transducin family protein [Carica papaya | 0.979 | 0.946 | 0.688 | 1e-159 | |
| 30698820 | 407 | transducin/WD-40 repeat-containing prote | 0.974 | 0.943 | 0.695 | 1e-156 |
| >gi|449503766|ref|XP_004162166.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/387 (75%), Positives = 342/387 (88%), Gaps = 2/387 (0%)
Query: 7 NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
+E EDD EVFLDE+DIIHEV VD+EDLPD D++ GSD E ++ DDS H F+GH+ E
Sbjct: 7 HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG
Sbjct: 65 VYTVVCSPLDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244
Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306
DSTLAL+GSKDGSVH+VNI TGKVV+SLVSH+DSIECIG + SSPWAATG MDQKLIIWD
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWD 304
Query: 307 LQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366
LQ S PRSTC HEDGVTCL W+GTS+Y+ TGCVDG+VR+WDSLSG+CV+TFSGH DAIQ+
Sbjct: 305 LQQSTPRSTCQHEDGVTCLTWIGTSRYLATGCVDGRVRIWDSLSGECVKTFSGHSDAIQS 364
Query: 367 ISVSAHQDFLVSVSLDGTARVFEIADF 393
++V A+ ++LVSV+LD TAR+FEIA++
Sbjct: 365 LAVCANLEYLVSVALDNTARIFEIAEY 391
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441201|ref|XP_004138371.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/387 (75%), Positives = 342/387 (88%), Gaps = 2/387 (0%)
Query: 7 NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
+E EDD EVFLDE+DIIHEV VD+EDLPD D++ GSD E ++ DDS H F+GH+ E
Sbjct: 7 HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG
Sbjct: 65 VYTVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244
Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306
DSTLAL+GSKDGSVH+VNI TGKVV+SLVSH+DSIECIG + SSPWAATG MDQKLIIWD
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWD 304
Query: 307 LQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366
LQ S PRSTC HEDGVTCL W+GTS+Y+ TGCVDG+VR+WDSLSG+CV+TFSGH DAIQ+
Sbjct: 305 LQQSTPRSTCQHEDGVTCLTWIGTSRYLATGCVDGRVRIWDSLSGECVKTFSGHSDAIQS 364
Query: 367 ISVSAHQDFLVSVSLDGTARVFEIADF 393
++V A+ ++LVSV+LD TAR+FEIA++
Sbjct: 365 LAVCANLEYLVSVALDNTARIFEIAEY 391
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444924|ref|XP_002282186.1| PREDICTED: angio-associated migratory cell protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 304/394 (77%), Positives = 342/394 (86%), Gaps = 3/394 (0%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D DAE+ E+ DDS HIF
Sbjct: 1 MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+GH+ E+Y+VACSP D LVATGGGDDKGF W+I GDWA E+ GHKDSV SL FSMDGQ
Sbjct: 58 TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGHKDSVFSLDFSMDGQ 117
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LLASG DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNADR 177
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEGLT
Sbjct: 178 GAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEGLT 237
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
CL I++DSTLAL+GSKD SVH+VNITTGKVVSSL SHTDSIECIG S S PWAATGSMD
Sbjct: 238 CLAITSDSTLALTGSKDSSVHVVNITTGKVVSSLTSHTDSIECIGLSLSPPWAATGSMDN 297
Query: 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360
KLI WDLQHS PR TCD+EDGVTCL WLG SKY+ GCVDGKVR+WDSLSGDCVR FSGH
Sbjct: 298 KLIFWDLQHSSPRCTCDNEDGVTCLSWLGASKYIAAGCVDGKVRIWDSLSGDCVRIFSGH 357
Query: 361 RDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
DAIQ+++VSA ++FL+SVSLDGTARVFEI DF+
Sbjct: 358 SDAIQSVAVSADRNFLLSVSLDGTARVFEIPDFQ 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738669|emb|CBI27914.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 304/396 (76%), Positives = 342/396 (86%), Gaps = 5/396 (1%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D DAE+ E+ DDS HIF
Sbjct: 1 MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMD 118
+GH+ E+Y+VACSP D LVATGGGDDKGF W+I GDWA E+ G HKDSV SL FSMD
Sbjct: 58 TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGMCHKDSVFSLDFSMD 117
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
GQLLASG DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNA
Sbjct: 118 GQLLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNA 177
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
DR AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEG
Sbjct: 178 DRGAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEG 237
Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298
LTCL I++DSTLAL+GSKD SVH+VNITTGKVVSSL SHTDSIECIG S S PWAATGSM
Sbjct: 238 LTCLAITSDSTLALTGSKDSSVHVVNITTGKVVSSLTSHTDSIECIGLSLSPPWAATGSM 297
Query: 299 DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358
D KLI WDLQHS PR TCD+EDGVTCL WLG SKY+ GCVDGKVR+WDSLSGDCVR FS
Sbjct: 298 DNKLIFWDLQHSSPRCTCDNEDGVTCLSWLGASKYIAAGCVDGKVRIWDSLSGDCVRIFS 357
Query: 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
GH DAIQ+++VSA ++FL+SVSLDGTARVFEI DF+
Sbjct: 358 GHSDAIQSVAVSADRNFLLSVSLDGTARVFEIPDFQ 393
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460494|ref|XP_002274841.1| PREDICTED: angio-associated migratory cell protein [Vitis vinifera] gi|296088039|emb|CBI35322.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/394 (75%), Positives = 343/394 (87%), Gaps = 3/394 (0%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D DAE+ E+ DDS HIF
Sbjct: 1 MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+GH+ E+Y+VACSP DA LVATGGGDDKGF W+I GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58 TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LLASG DG V+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGFVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
+AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
CL I++DSTLAL+GSKD SVH+VNI TGKVVSSL SHTDSIECIG S SSPWAATG MD
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLSSPWAATGGMDN 297
Query: 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360
KL++WDLQHS PR TCD+EDGVTCL WLG SKYV GCVDGK+R+WDSLSGDCVRTFSGH
Sbjct: 298 KLVVWDLQHSSPRCTCDNEDGVTCLSWLGDSKYVAAGCVDGKIRIWDSLSGDCVRTFSGH 357
Query: 361 RDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
DAIQ++ VSA ++FLVS SLDGTARVFEI +F+
Sbjct: 358 SDAIQSLGVSADKNFLVSGSLDGTARVFEIPEFQ 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771302|emb|CAN60774.1| hypothetical protein VITISV_007962 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/394 (75%), Positives = 342/394 (86%), Gaps = 3/394 (0%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D DAE+ E+ DDS HIF
Sbjct: 1 MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+GH+ E+Y+VACSP DA LVATGGGDDKGF W+I GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58 TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LLASG DGLV+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
+AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
CL I++DSTLAL+GSKD SVH+VNI TGKVVSSL SHTDSIECIG S SSPWAATG MD
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLSSPWAATGGMDN 297
Query: 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360
KL +WDLQHS PR TCD+EDGVTCL WLG SKYV GCVDGK+ +WDSLSGDCVRTFSGH
Sbjct: 298 KLXVWDLQHSSPRCTCDNEDGVTCLSWLGDSKYVAAGCVDGKIXIWDSLSGDCVRTFSGH 357
Query: 361 RDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
DAIQ++ VSA ++FLVS SLDGTARVFEI +F+
Sbjct: 358 SDAIQSLGVSADKNFLVSGSLDGTARVFEIPEFQ 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135435|ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|222835587|gb|EEE74022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/385 (75%), Positives = 340/385 (88%), Gaps = 8/385 (2%)
Query: 10 EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
EDDQ EVFLD+SDIIHEVTVD+EDLPD +D ++ + DDS HIF+GH+ E+Y+
Sbjct: 2 EDDQGEVFLDDSDIIHEVTVDEEDLPD--------ADDDDNDDTDDSMHIFTGHTSELYT 53
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
VACSP D LVATGGGDDKGF W+I GDWA+E++GHK+SVSSL FS DGQLLASGG DG
Sbjct: 54 VACSPADPLLVATGGGDDKGFLWKIGLGDWAAELKGHKESVSSLTFSSDGQLLASGGFDG 113
Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
+VQIWD SSGNLKC LEGP G+EWV WHP+GH+VLAGSED TVWMWNAD+ AYLN F+G
Sbjct: 114 IVQIWDASSGNLKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAG 173
Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
H +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+GLTCL +S+DST
Sbjct: 174 HEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDST 233
Query: 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309
LA++GSKD SVH+VNITTG+VVSSLVSH+DS+EC+G + SSPWAATG +DQKLIIWDLQH
Sbjct: 234 LAITGSKDNSVHIVNITTGRVVSSLVSHSDSVECVGLAPSSPWAATGGLDQKLIIWDLQH 293
Query: 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369
SLPR++C+H+DGVTCL WLG S+YV TGCVDGKVR+WDSLSGDC+R FSGH DA+Q++S+
Sbjct: 294 SLPRASCEHKDGVTCLAWLGASRYVATGCVDGKVRLWDSLSGDCIRIFSGHADAVQSLSI 353
Query: 370 SAHQDFLVSVSLDGTARVFEIADFK 394
SA+QD+LVS S DGTARVFEIA+FK
Sbjct: 354 SANQDYLVSGSSDGTARVFEIAEFK 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146457|ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|222862888|gb|EEF00395.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/397 (73%), Positives = 343/397 (86%), Gaps = 10/397 (2%)
Query: 1 MNNP---IHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDST 57
MN P +H+E EDDQ EVFLD+SDII EV VD+EDLPD + ++ + DDS
Sbjct: 1 MNGPNRSLHDEEEDDQGEVFLDDSDIIDEVAVDEEDLPDA-------DEDDDDDDTDDSM 53
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
HIF+GH+ E+Y+V+CSPTD LVATGGGDDKGF W+I GDWASE++GHKDSVS LAFS
Sbjct: 54 HIFTGHTGELYTVSCSPTDPLLVATGGGDDKGFLWKIGLGDWASELKGHKDSVSCLAFSS 113
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQLLASGG DGLVQIWD SSGN KC LEGP G+EWV WHP+GH+VLAGSED +VWMWN
Sbjct: 114 DGQLLASGGFDGLVQIWDASSGNHKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKSVWMWN 173
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
ADR AYLN F+GH +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+
Sbjct: 174 ADRGAYLNSFTGHEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTD 233
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
GLTCL +S+DSTLA++GSKD SVH+VNIT+G+VVSSL SH+DS+EC+ + SSPWAATG
Sbjct: 234 GLTCLALSSDSTLAITGSKDNSVHIVNITSGRVVSSLASHSDSVECVELAPSSPWAATGG 293
Query: 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357
+DQKLIIWDLQHSLPR+TC+H+DGVTC+ WLG S+YV TGCVDGKVR+WDSLSGDC+RTF
Sbjct: 294 LDQKLIIWDLQHSLPRATCEHQDGVTCVAWLGASRYVATGCVDGKVRLWDSLSGDCIRTF 353
Query: 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
SGH DAIQ++S+SA+QD+LVS S DGTARVFEIA+FK
Sbjct: 354 SGHADAIQSLSLSANQDYLVSGSSDGTARVFEIAEFK 390
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|152926156|gb|ABS32230.1| transducin family protein [Carica papaya] gi|164522082|gb|ABY60781.1| transducin family protein [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/414 (68%), Positives = 329/414 (79%), Gaps = 28/414 (6%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
MN+P E DDQ EVF+DESD+IHE TVD+EDLPD +DD SDAEN E+PDDS HIF
Sbjct: 1 MNSPPPEE--DDQGEVFIDESDVIHEFTVDEEDLPDAEDD--ASSDAENIEEPDDSMHIF 56
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+GH+ E+Y+VACSPTDA LVATGGGDDKGF W+I +GDW SE+ GHKDSVS LAFS DGQ
Sbjct: 57 TGHTGELYAVACSPTDARLVATGGGDDKGFLWKIGRGDWGSELLGHKDSVSCLAFSTDGQ 116
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LASGGLDGLVQIWD SSGN+KC LEGP G+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 117 FLASGGLDGLVQIWDASSGNIKCALEGPEKGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 176
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR+WNP+SGENIHV++GHPYHTEGLT
Sbjct: 177 GAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRIWNPRSGENIHVVKGHPYHTEGLT 236
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
CL +S+DS+LAL+GSKD SVH+VNI TGKVVSSL SHTDS+EC+GF SP A Q
Sbjct: 237 CLAMSSDSSLALTGSKDSSVHIVNIVTGKVVSSLDSHTDSVECVGF---SPRYALLGQQQ 293
Query: 301 KLIIWDLQHSLPRSTC---------------------DHEDGVTCLMWLGTSKYVVTGCV 339
+ I L + + + C ++GVTCL WL S+ + TGCV
Sbjct: 294 EAWIISLLYGISSTQCLVLHVIMRQRFFITDVNEVHFFRQEGVTCLAWLDASRCLATGCV 353
Query: 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
DGKVR+WDSLSG+CVRTF+GH DAIQ++S SA+ DFLVS S+DGTARVFE+A+F
Sbjct: 354 DGKVRLWDSLSGNCVRTFTGHSDAIQSLSFSANWDFLVSGSIDGTARVFEVAEF 407
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30698820|ref|NP_177329.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|19347844|gb|AAL86002.1| unknown protein [Arabidopsis thaliana] gi|25054983|gb|AAN71963.1| unknown protein [Arabidopsis thaliana] gi|332197118|gb|AEE35239.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/388 (69%), Positives = 326/388 (84%), Gaps = 4/388 (1%)
Query: 10 EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
E+D+ E+FL ESD++ E+ VD+EDLP+ DDDD D E ++ DDS H F+GH E+Y+
Sbjct: 17 EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMD-DDGEQFDENDDSVHTFTGHKGELYA 75
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
+ACSPTDATLVATGGGDDK F W+I GDWA+E+ GHKDSVS LAFS DGQLLASGGLDG
Sbjct: 76 LACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDG 135
Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
+VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+ AYLNMFSG
Sbjct: 136 VVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSG 195
Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
H +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLTCL I+++S+
Sbjct: 196 HNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLTCLDINSNSS 255
Query: 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS---PWAATGSMDQKLIIWD 306
LA+SGSKDGSVH+VNI TGKVVSSL SHTDS+EC+ FS SS P AATG MD+KLIIWD
Sbjct: 256 LAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWD 315
Query: 307 LQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366
LQHS PR C+HE+GVT L W+GTSKY+ TGC +G V +WDSL G+CV T+ GH+DA+QA
Sbjct: 316 LQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTYHGHQDAVQA 375
Query: 367 ISVSAHQDFLVSVSLDGTARVFEIADFK 394
ISVS + DF+VSVS+D TARVFE ++F+
Sbjct: 376 ISVSTNTDFIVSVSVDNTARVFESSEFQ 403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| TAIR|locus:2012971 | 407 | AT1G71840 "AT1G71840" [Arabido | 0.992 | 0.960 | 0.664 | 4.3e-148 | |
| UNIPROTKB|F1ND84 | 411 | AAMP "Uncharacterized protein" | 0.857 | 0.822 | 0.367 | 7.1e-61 | |
| UNIPROTKB|F1P1L6 | 408 | AAMP "Uncharacterized protein" | 0.857 | 0.828 | 0.367 | 7.1e-61 | |
| UNIPROTKB|Q3SZK1 | 434 | AAMP "Angio-associated migrato | 0.850 | 0.771 | 0.373 | 2.4e-60 | |
| RGD|1306281 | 435 | Aamp "angio-associated, migrat | 0.850 | 0.770 | 0.373 | 3.1e-60 | |
| UNIPROTKB|Q5RCG7 | 434 | AAMP "Angio-associated migrato | 0.850 | 0.771 | 0.373 | 5e-60 | |
| UNIPROTKB|Q13685 | 434 | AAMP "Angio-associated migrato | 0.850 | 0.771 | 0.373 | 5e-60 | |
| UNIPROTKB|Q7YR70 | 435 | AAMP "Angio-associated migrato | 0.850 | 0.770 | 0.368 | 6.4e-60 | |
| ZFIN|ZDB-GENE-040426-2370 | 420 | aamp "angio-associated, migrat | 0.847 | 0.795 | 0.365 | 4.8e-55 | |
| POMBASE|SPAC25H1.08c | 399 | SPAC25H1.08c "ribosome biogene | 0.852 | 0.842 | 0.317 | 9.5e-50 |
| TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
Identities = 264/397 (66%), Positives = 319/397 (80%)
Query: 1 MNNPIHNEVEDDQREVFLDESDIIHEVTVXXXXXXXXXXXXXXXXXAENTEQPDDSTHIF 60
MNN + E E+D+ E+FL ESD++ E+ V E ++ DDS H F
Sbjct: 10 MNN-LAME-EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMDDD-GEQFDENDDSVHTF 66
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+GH E+Y++ACSPTDATLVATGGGDDK F W+I GDWA+E+ GHKDSVS LAFS DGQ
Sbjct: 67 TGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQ 126
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LLASGGLDG+VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+
Sbjct: 127 LLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADK 186
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
AYLNMFSGH +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLT
Sbjct: 187 EAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLT 246
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS---PWAATGS 297
CL I+++S+LA+SGSKDGSVH+VNI TGKVVSSL SHTDS+EC+ FS SS P AATG
Sbjct: 247 CLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGG 306
Query: 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357
MD+KLIIWDLQHS PR C+HE+GVT L W+GTSKY+ TGC +G V +WDSL G+CV T+
Sbjct: 307 MDKKLIIWDLQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTY 366
Query: 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
GH+DA+QAISVS + DF+VSVS+D TARVFE ++F+
Sbjct: 367 HGHQDAVQAISVSTNTDFIVSVSVDNTARVFESSEFQ 403
|
|
| UNIPROTKB|F1ND84 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 131/356 (36%), Positives = 186/356 (52%)
Query: 48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
+ E DDS FS HS V+ V+ P TL TGG DDK F WR++ G+ E GHK
Sbjct: 52 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 111
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
DSV+ FS D +A+G + GL+++W + + E G +EW+ WHP+ H++LAG
Sbjct: 112 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 169
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ D WMW + F G TCG PDGK G +D T+R+W+ K G ++H
Sbjct: 170 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 228
Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-----SSLV------- 275
V++G H + LTC+ + D +L L+GS D +VN TGKVV S
Sbjct: 229 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVVCVFKMESAAPKAPASE 288
Query: 276 ---SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332
+ ++S+E +GF P AA G +D L I+DL R C HE G+ L+W S
Sbjct: 289 GEEAESNSVESLGFCNVMPLAAVGYLDGTLAIYDLSTQSLRHKCQHESGIVQLLWEENSA 348
Query: 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ SG + + GH I +V+ +V+ S D A+VF
Sbjct: 349 VVYTCSLDGAVRLWDARSGKMISEYRGHSAEILDFAVNKDASIVVTTSGDHQAKVF 404
|
|
| UNIPROTKB|F1P1L6 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 131/356 (36%), Positives = 186/356 (52%)
Query: 48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
+ E DDS FS HS V+ V+ P TL TGG DDK F WR++ G+ E GHK
Sbjct: 49 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 108
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
DSV+ FS D +A+G + GL+++W + + E G +EW+ WHP+ H++LAG
Sbjct: 109 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 166
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ D WMW + F G TCG PDGK G +D T+R+W+ K G ++H
Sbjct: 167 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 225
Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-----SSLV------- 275
V++G H + LTC+ + D +L L+GS D +VN TGKVV S
Sbjct: 226 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVVCVFKMESAAPKAPASE 285
Query: 276 ---SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332
+ ++S+E +GF P AA G +D L I+DL R C HE G+ L+W S
Sbjct: 286 GEEAESNSVESLGFCNVMPLAAVGYLDGTLAIYDLSTQSLRHKCQHESGIVQLLWEENSA 345
Query: 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
V T +DG VR+WD+ SG + + GH I +V+ +V+ S D A+VF
Sbjct: 346 VVYTCSLDGAVRLWDARSGKMISEYRGHSAEILDFAVNKDASIVVTTSGDHQAKVF 401
|
|
| UNIPROTKB|Q3SZK1 AAMP "Angio-associated migratory cell protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 132/353 (37%), Positives = 186/353 (52%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKDSV
Sbjct: 78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+ D
Sbjct: 138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
WMW F G TCG PDGK G +D T+R+W+ K G +IHV++
Sbjct: 196 GNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHVLK 254
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS-----------SL----V 275
G H LTC+ + D +L L+GS D +V+ TTGKVV SL
Sbjct: 255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEE 314
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
S ++S+E +GF P AA G +D L I+DL R C H+ G+ L+W + V
Sbjct: 315 SESNSVESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAVVY 374
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 375 TCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
|
|
| RGD|1306281 Aamp "angio-associated, migratory cell protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 132/353 (37%), Positives = 185/353 (52%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKDSV
Sbjct: 79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+ D
Sbjct: 139 TCAGFSHDSTLVATGDMSGLLKVWQVETKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
WMW F G TCG PDGK G +D T+R+W+ K G IHV++
Sbjct: 197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNPIHVLK 255
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS-----------SL----V 275
G H LTC+ + D +L L+GS D +V+ TTGKVV SL
Sbjct: 256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEE 315
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
S ++S+E +GF P AA G +D L I+DL R C H+ G+ L+W + V
Sbjct: 316 SESNSVESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAVVY 375
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 376 TCSLDGVVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 428
|
|
| UNIPROTKB|Q5RCG7 AAMP "Angio-associated migratory cell protein" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 132/353 (37%), Positives = 185/353 (52%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKDSV
Sbjct: 78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+ D
Sbjct: 138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
WMW F G TCG PDGK G +D T+R+W+ K G IHV++
Sbjct: 196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS-----------SL----V 275
G H LTC+ + D +L L+GS D +V+ TTGKVV SL
Sbjct: 255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEE 314
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
S ++S+E +GF P AA G +D L I+DL R C H+ G+ L+W + V
Sbjct: 315 SESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAVVY 374
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 375 TCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
|
|
| UNIPROTKB|Q13685 AAMP "Angio-associated migratory cell protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 132/353 (37%), Positives = 185/353 (52%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKDSV
Sbjct: 78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+ D
Sbjct: 138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
WMW F G TCG PDGK G +D T+R+W+ K G IHV++
Sbjct: 196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS-----------SL----V 275
G H LTC+ + D +L L+GS D +V+ TTGKVV SL
Sbjct: 255 GTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEE 314
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
S ++S+E +GF P AA G +D L I+DL R C H+ G+ L+W + V
Sbjct: 315 SESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAVVY 374
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 375 TCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
|
|
| UNIPROTKB|Q7YR70 AAMP "Angio-associated migratory cell protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 130/353 (36%), Positives = 183/353 (51%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
E PDDS F+ HS V+ V+ P TL TGG DDK F WR++ G+ E GHKDSV
Sbjct: 79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ FS D L+A+G + GL+++W + + E G +EW+ WHPR ++LAG+ D
Sbjct: 139 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
WMW F G TCG PDGK G +D T+R+W+ K G IHV++
Sbjct: 197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 255
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL---------------V 275
G H LTC+ + D +L L+GS D +V+ TTGKVV
Sbjct: 256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKVVGVFRPETVASQPNVGEGEE 315
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
S ++S+E +GF P AA G +D L I+DL R C H+ G+ L+W + V
Sbjct: 316 SESNSVESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAVVY 375
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
T +DG VR+WD+ +G + + GH I ++S +V+ S D A+VF
Sbjct: 376 TCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 428
|
|
| ZFIN|ZDB-GENE-040426-2370 aamp "angio-associated, migratory cell protein" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 128/350 (36%), Positives = 178/350 (50%)
Query: 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS 109
+EQ DDS S H+ V+ V P +L +GG DD+ F WR+ G+ E GHKDS
Sbjct: 69 SEQ-DDSELTLSRHTGSVFCVRLDPLTNSLAMSGGEDDRAFLWRVCDGEVLLECTGHKDS 127
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
V + FS D L ASG + G++++W + E G +EW+ WHP ++LAG
Sbjct: 128 VVCVGFSSDSALAASGDMSGVIRVWSVEKREEVWSAEV--GDLEWLEWHPCAPVLLAGVA 185
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
D +VWMW A F G TCG PDGK G +D +LR+W+ K G I+VI
Sbjct: 186 DGSVWMWKLPSGA-CRTFQSPGCQTTCGRILPDGKRAIVGYEDGSLRLWDLKQGTAIYVI 244
Query: 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT----------D 279
+G H LTC++ + + L LSGS DG +++ ++GKV+ S S T +
Sbjct: 245 KGQDGHRGALTCVSSNQEGALLLSGSVDGQAKLISSSSGKVLCSFSSQTSEGSGSAQDSN 304
Query: 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338
S+E +GF P AA +D L I+DL H+L R C HE GV L W S V T
Sbjct: 305 SVESVGFCNVLPLAAVAYLDGTLAIYDLNTHTL-RHQCKHEVGVVQLQWEAESAVVCTCS 363
Query: 339 VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
+ G + +WD+ SG V F GH I ++ V+ D A+VF
Sbjct: 364 LSGVLSLWDARSGVLVSEFHGHSAEILDFVLNREASVAVTAGGDHKAKVF 413
|
|
| POMBASE|SPAC25H1.08c SPAC25H1.08c "ribosome biogenesis protein Sqt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 110/346 (31%), Positives = 177/346 (51%)
Query: 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
D S F H D V+SV+ +P + L A+GGGDD G+ W I G+ ++ GHKDS+ ++
Sbjct: 51 DMSVQGFFEHKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGHKDSIVAI 110
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
+S DG +A+GG+D V++W S+G T + W+SWHP+G + AG D ++
Sbjct: 111 DWSFDGTYIATGGMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHPKGLFLAAGCNDGSI 170
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDG--KTICTGSDDATLRVWNPKSG-------E 224
WMW+ + + GH + V G F P G K + T D TL VWNP +G
Sbjct: 171 WMWSLPSGKVVQVMYGHTAPVNAGKFIPPGVGKRLATVDDSGTLIVWNPATGAPECRMSS 230
Query: 225 NIHVIR-GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
+ H G+ G T +A+ + G G V +VNI + +++SL + T+S+E
Sbjct: 231 DDHRFDPGNEETAAGWTSFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEA 290
Query: 284 IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKV 343
I + P A S+D + ++D R + HE V +L + Y++T C D +
Sbjct: 291 IALCTALPICACASVDGTVALYDSASLKFRKSLPHEQAVIDCKFLPNTPYLLTACADCVI 350
Query: 344 RVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
R WD SG + ++GH++ I ++++ +V+ S D VF+
Sbjct: 351 RKWDVRSGQLLGEYTGHQEPILCMAITPDGKRVVTGSDDTELLVFD 396
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O13982 | YEC8_SCHPO | No assigned EC number | 0.3045 | 0.9619 | 0.9498 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 394 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-69 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-66 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-50 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-46 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-41 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-12 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 8e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00017 | 287 | smart00017, OSTEO, Osteopontin | 0.001 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 7e-69
Identities = 96/289 (33%), Positives = 163/289 (56%), Gaps = 4/289 (1%)
Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161
++GH V+ +AFS DG+LLA+G DG +++WD +G L TL+G G V V+ G
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
+ +GS D T+ +W+ + + +GH S V+ F+PDG+ + + S D T++VW+ +
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281
+G+ + +RGH T+ + + S D T S S+DG++ + ++ TGK V++L HT +
Sbjct: 124 TGKCLTTLRGH---TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVD 340
+ FS + S D + +WDL T HE+GV + + + +G D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
G +RVWD +G+CV+T SGH +++ +++ S L S S DGT R+++
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-66
Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 5/293 (1%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
GH+ V VA SP D L+ATG GD W + G+ ++GH V +A
Sbjct: 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175
S DG LASG D +++WD +G TL G V V++ P G I+ + S D T+ +
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
W+ + L GH V F+PDG + + S D T+++W+ ++G+ + + G H
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---H 176
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295
T + + S D LS S DG++ + +++TGK + +L H + + + FS A+
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 296 GSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
GS D + +WDL+ T H + VT L W K + +G DG +R+WD
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-50
Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 4/255 (1%)
Query: 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
+ + GH+ V VA S D T +A+G D W + G+ + GH VS
Sbjct: 39 ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
S+AFS DG++L+S D +++WD +G TL G V V++ P G V + S+D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
T+ +W+ + +GH V F+PDG+ + + S D T+++W+ +G+ + +RG
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
H G+ + S D L SGS+DG++ + ++ TG+ V +L HT+S+ + +S
Sbjct: 218 ---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
Query: 292 WAATGSMDQKLIIWD 306
A+GS D + IWD
Sbjct: 275 RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-46
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 4/209 (1%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH VTC F+PDGK + TGS D T++VW+ ++GE + ++GH T + + SA
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH---TGPVRDVAASA 61
Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306
D T SGS D ++ + ++ TG+ V +L HT + + FS ++ S D+ + +WD
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
Query: 307 LQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQ 365
++ +T H D V + + +V + DG +++WD +G CV T +GH +
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 366 AISVSAHQDFLVSVSLDGTARVFEIADFK 394
+++ S + L+S S DGT ++++++ K
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 8e-41
Identities = 108/399 (27%), Positives = 175/399 (43%), Gaps = 13/399 (3%)
Query: 5 IHNEVEDDQREVFLDESDIIHEVTVD-DEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGH 63
+ D + D I + D +L D + + H
Sbjct: 49 SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108
Query: 64 SDEVYSVACSPTDATLVATGGGDDKG--FFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQ 120
V +A S D + G W ++ ++GH +SV+SLAFS DG+
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168
Query: 121 LLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNA 178
LLASG LDG +++WD +G TL G V +++ P G +++A S D T+ +W+
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 179 DRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
L SGH S F+PDG + +GS D T+R+W+ +S ++ H+
Sbjct: 229 STGKLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSS 285
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS--SLVSHTDSIECIGFSRSSPWAAT 295
+ + S D L SGS DG+V + ++ TGK++S +L H + + FS +
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 296 GSMDQKLI-IWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354
G D I +WDL+ P T + V + + + V +G DG VR+WD +G +
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 355 RTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
R GH + ++ S L S S D T R++++
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.5 bits (228), Expect = 2e-20
Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 8/215 (3%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHT-EGLTCLTI 244
GH S+T F+PDG+ + +GS D T+++W+ +GE I + G + L +
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 245 SADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSSPWAATGS-MDQKL 302
+S L S S DG+V + +++T GK++ +L H++S+ + FS A+GS +D +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 303 IIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCV-DGKVRVWDSLSGDCVR-TFSG 359
+WDL+ P ST H D V+ L + ++ DG +R+WD +G +R T SG
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
H D+ S S L S S DGT R++++
Sbjct: 241 HSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.5 bits (215), Expect = 9e-19
Identities = 71/181 (39%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGH 106
+ SGHS V SVA SP L A+G D W + G S ++GH
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL-ASGSSDGTVRLWDLETGKLLSSLTLKGH 327
Query: 107 KDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
+ VSSL+FS DG LL SGG DG +++WD +G TLEG + VS+ P G +V
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSPDGRVVS 386
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
+GS D TV +W+ + L GH S VT DF+PDGK++ +GS D T+R+W+ K+
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
Query: 226 I 226
Sbjct: 447 S 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (165), Expect = 2e-12
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GH V S++ SP + LV+ G D W + G ++GH +V S++FS DG
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDG 382
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
++++SG DG V++WD S+G+L L+G V + + P G + +GS D+T+ +W+
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
+S+ F+PDGK + + S D
Sbjct: 443 ------------TSLKSVSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 46/215 (21%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSS----------GNLKCTLEGPGGGVEWVSWHP 159
V ++ F DG+ A+ G++ ++I++ S ++ G+ W S+
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545
Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVW 218
V + + + V +W+ R+ + H V D++ D + +GSDD ++++W
Sbjct: 546 SQ--VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV-VSSLVS 276
+ G +I I+ + C+ ++S +L+ GS D V+ ++ K+ + +++
Sbjct: 604 SINQGVSIGTIKT----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311
H+ ++ + F SS ++ S D L +WDL S+
Sbjct: 660 HSKTVSYVRFVDSSTLVSS-STDNTLKLWDLSMSI 693
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
++GH V+S+AFS DG LLASG DG V++WD
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-06
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
++GH V+S+AFS DG+ LASG DG +++WD
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-06
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
L GH VT F+PDGK + +GSDD T+++W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-05
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
L GH VT F+PDG + +GSDD T+RVW+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
GH+ +V V+ P+ ++A+ G D W + +G I+ H D ++SL +++DG L
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
L + D + I DP G + ++E
Sbjct: 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212
|
Length = 493 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 105 GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCT-------LEGPGGGVEWVS 156
G + + +AF+ D Q L + DG + W L L+G V VS
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 157 WHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
+HP VLA + D V +W+ +R + + H +T ++ DG +CT S D L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
Query: 216 RVWNPKSGENIHVIRGH 232
+ +P+ G + + H
Sbjct: 193 NIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQL 121
H V+S+ S D TL+A+G D W INQG I+ K ++ + F + G+
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRS 632
Query: 122 LASGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
LA G D V +D + L CT+ G V +V + +V + S D+T+ +W+
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDLSM 691
Query: 181 AAY------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ L+ F GH + + I TGS+ + V++
Sbjct: 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-05
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306
+G+++ +L HT + + FS + A+GS D + +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
H VT + + KY+ +G DG +++WD
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-05
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 350 SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
SG+ ++T GH + +++ S +L S S DGT ++++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 8e-05
Identities = 60/272 (22%), Positives = 107/272 (39%), Gaps = 60/272 (22%)
Query: 92 WRINQGDWASEIQGHKDSVSSLAF-SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150
W + + +E++ H+ V S+ + S D LLASG DG V++W + G T++
Sbjct: 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 619
Query: 151 --GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTIC 207
V++ S G + GS D V+ ++ L GH +V+ F D T+
Sbjct: 620 ICCVQFPS--ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV 676
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
+ S D TL++W D ++++SG + +H
Sbjct: 677 SSSTDNTLKLW----------------------------DLSMSISGINETPLH------ 702
Query: 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-----STCDHEDG- 321
S + HT+ +G S S + ATGS ++ ++ +P T D G
Sbjct: 703 -----SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757
Query: 322 --------VTCLMWLGTSKYVVTGCVDGKVRV 345
++ + W G S +V G +++
Sbjct: 758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 1e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
H VT + + + +G DG VRVWD
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
SG L TL+G G V V++ P G + +GS+D T+ +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
G +RT GH + +++ S + L S S DGT RV+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 6e-04
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306
GK++ +L HT + + FS A+GS D + +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
G L TL+G G V V++ P G+++ +GS+D TV +W+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|214472 smart00017, OSTEO, Osteopontin | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 8 EVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEV 67
E +D ++E +S+ HE T D +D D D DD +D+++ E DDS H +
Sbjct: 49 ETDDFKQETLPSKSNESHEHTDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDESHHSDE 108
Query: 68 YSVACSPTDATLVAT 82
V PTDA
Sbjct: 109 SDVTDFPTDAPATDV 123
|
Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 168 SEDSTVWMWN-------ADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
SED T+ W + + + GH V F P + + D + VW+
Sbjct: 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154
Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-- 277
+ G+ + VI+ H ++ +T L + D +L + SKD +++++ G +VSS+ +H
Sbjct: 155 VERGKAVEVIKCH---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211
Query: 278 TDSIECIGFSRSSPWAATG---SMDQKLIIWDLQH-SLPRSTCD 317
S C+ R G S +++++WD + + P ST D
Sbjct: 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255
|
Length = 493 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 102 EIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIW-----DPSSGNLK---CTLEGPGGGV 152
+++GH S+ L F+ ++LASG D +++W D S +K C L+G +
Sbjct: 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128
Query: 153 EWVSWHPRGHIVLAGSE-DSTVWMW---NADRAAYLNM 186
+ W+P + ++ S DS V +W N RA +NM
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.98 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.98 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.98 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.98 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.98 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.95 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.95 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.93 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.92 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.92 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.89 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.86 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.86 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.84 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.8 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.8 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.75 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.71 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.68 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.66 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.65 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.61 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.59 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.58 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.58 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.56 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.54 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.51 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.49 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.49 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.47 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.46 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.4 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.38 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.36 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.36 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.36 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.35 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.34 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.23 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.23 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.18 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.17 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.15 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.15 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.12 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.12 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.11 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.04 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.04 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.01 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.0 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.99 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.98 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.97 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.94 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.94 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.94 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.9 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.88 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.87 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.84 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.82 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.73 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.59 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.54 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.51 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.43 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.4 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.38 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.31 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.29 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.29 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.28 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.28 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.27 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.2 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.13 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.11 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.09 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.06 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.06 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.99 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.98 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.93 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.9 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.89 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.87 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.84 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.75 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.75 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.73 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.72 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.7 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.68 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.64 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.63 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.61 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.59 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.57 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.55 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.55 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.54 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.52 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.48 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.47 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.45 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.43 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.37 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.32 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.21 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.19 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.11 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.03 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.03 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.99 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.48 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.43 | |
| PRK10115 | 686 | protease 2; Provisional | 96.43 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.31 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.27 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.25 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.19 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.04 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.0 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.71 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.69 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.43 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.42 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.35 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.22 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.2 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.15 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.87 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.86 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.86 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.83 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.78 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.74 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.53 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.45 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.11 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.97 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.93 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.93 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.82 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.77 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.72 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.61 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.49 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.46 | |
| PLN02153 | 341 | epithiospecifier protein | 93.45 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.25 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.18 | |
| PRK10115 | 686 | protease 2; Provisional | 92.69 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.49 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.47 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.05 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.9 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.79 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.68 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.6 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.03 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.82 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.61 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.53 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.46 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.01 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.81 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.73 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.69 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.63 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.63 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.37 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.09 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.99 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.51 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.4 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.99 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.8 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.65 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 87.45 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.41 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 87.17 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.14 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.04 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 86.94 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 86.78 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.47 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.99 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 85.77 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.73 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 85.41 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.12 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.7 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.16 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.09 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 83.98 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 83.91 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.86 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 83.68 | |
| PLN02153 | 341 | epithiospecifier protein | 83.59 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.51 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 83.34 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 82.86 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 82.13 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 81.62 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 81.44 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 80.92 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 80.7 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.17 |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=425.89 Aligned_cols=386 Identities=41% Similarity=0.720 Sum_probs=336.2
Q ss_pred CCCCCCCcccccccccCCCcceeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCcEEEEEEcCCCCcEEEE
Q 016187 3 NPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVAT 82 (394)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~las 82 (394)
++.+.+++++-+|+.++++|...+...+++++++.+++...+.++.-....+++.+.|.+|+++|++++.+| +.+++||
T Consensus 3 ~dee~iee~Evee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aT 81 (399)
T KOG0296|consen 3 GDEEFIEEEEVEEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVAT 81 (399)
T ss_pred chhhheehhhccccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEe
Confidence 344455555666667777777766666555555433332221111111122889999999999999999999 6889999
Q ss_pred ecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 83 g~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
||.|...++|++.++++...+.+|++.|+++.||.+|.+||||..+|.|+||...++.....+...-..+.++.|||.++
T Consensus 82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888887788899999999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~ 242 (394)
+|++|+.||.+++|.+.++...+.+.||..++++..|.|+|++++++..||+|++||++++++++.+.+.. .....++
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~ 239 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCI 239 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCcc
Confidence 99999999999999999988889999999999999999999999999999999999999999998887543 3457788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--------cCCCCEEE---EEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLV--------SHTDSIEC---IGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--------~h~~~i~~---v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.++..+..++.|+.++.+++.+..+|+.+.... .+...+.| +.++..-+++|+|+.||+|.|||+.+..
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 999999999999999999999999999887765 34444444 4555566789999999999999999999
Q ss_pred cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.|..+.|+.+|+.+.|.+ ..+|++++.+|+|+.||+++|+++..+.||..+|.+++++|+.++++|+|.|++.++|+++
T Consensus 320 ~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 320 LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 7899999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 016187 392 D 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 399 ~ 399 (399)
T KOG0296|consen 399 N 399 (399)
T ss_pred C
Confidence 3
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=406.15 Aligned_cols=330 Identities=27% Similarity=0.486 Sum_probs=300.3
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.+...+.||.++|.|++|+| ++..||||++|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 45667889999999999999 46689999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceE-EEEecCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 135 DPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 135 d~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
|..+|+.+ ..+.+|...|++++|.| ...+|++++.||.++|||+..+.++..+.||..+|+|+.|--+ .++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence 99998765 57899999999999987 3568999999999999999999999999999999999999754 48999
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEc-----------CCCC-------------------------EEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-----------ADST-------------------------LAL 252 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-------------------------~l~ 252 (394)
|+.|++|++|+...|.....+++| ...|+.++.+ |.+. .++
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGH---ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGH---AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred cCCCceEEEEEccchhHHHhhccc---chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 999999999999999888888875 4456666554 3333 499
Q ss_pred EEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCC
Q 016187 253 SGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGT 330 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~ 330 (394)
+|+.|.++.+|+.... +++..+.+|..-|+.+.|||+++++|++|-|..|++|+.++.+.. .+.+|-..|..++|+.|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 9999999999997654 588889999999999999999999999999999999999887544 45679999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.++|++|+.|.++++|++++.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=364.11 Aligned_cols=292 Identities=27% Similarity=0.498 Sum_probs=266.8
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+...+.||.++|.|++|+|+|.+|+||+.|.++|+||+.+.....++++|...|.+++|+|+++.|++|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccce-eeeecccCcCeEEEEECC-----CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 178 ADRAAY-LNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 178 ~~~~~~-~~~~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
..+++. .+.+.+|...|++++|.| ..++||+++.||+|+|||+..++++..+.+ |..+|+|+.|..+ .++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---HT~~VTCvrwGG~-gli 261 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---HTASVTCVRWGGE-GLI 261 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---CccceEEEEEcCC-ceE
Confidence 988754 467899999999999976 567999999999999999999999888876 5678999999865 478
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC-----------CCCC-------------------------eEEE
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS-----------RSSP-------------------------WAAT 295 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~-----------~~~~-------------------------~l~s 295 (394)
++|+.|++|++|+...|++.+.+.+|...|+.++++ |.+. .|++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999999999999999999999999999999877 2232 4999
Q ss_pred EeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCC
Q 016187 296 GSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 373 (394)
|+.|.++.+|+..... .....+|...|+.+.|+||++|+|+++.|.+|++|+.++|+.+.+|.||-++|..++|+.|.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 9999999999975432 23456899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeccCC
Q 016187 374 DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 374 ~~l~s~s~dg~i~iw~~~~~ 393 (394)
++|+|||.|.++++|++..-
T Consensus 422 RLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cEEEEcCCCceEEEEEeeee
Confidence 99999999999999998754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=363.16 Aligned_cols=282 Identities=27% Similarity=0.464 Sum_probs=267.0
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
|-..+|..+.||+++..|+|||.+|.++||+..+...++++.+|.+.+.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45789999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
.+..+.+|...|..++|+|+|++|+|++.|.+-|+||+++++.+...++ |..+|.+++|.|||.++++|+.|..-+|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG---Hs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG---HSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc---cccccceeEecCCCceeeccCccchhhe
Confidence 9999999999999999999999999999999999999999887666555 6788999999999999999999999999
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeC-CCCEEEEEeCC
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLG-TSKYVVTGCVD 340 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~sg~~d 340 (394)
||+++|+++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...... ...|..-|+.+.|.| .|.+|+|++.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999999999999999999999999998765544 347889999999998 78899999999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++||..+++.+++++.||.+.|.++.+++|+++++|+|.|+++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=350.59 Aligned_cols=283 Identities=25% Similarity=0.411 Sum_probs=267.8
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~vwd~~~ 138 (394)
.|.+.+|..+.|++ ++..||||+-+|.++||+..+...+.+|.||+..|.++.|+|. +..||||+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 36678999999998 5678999999999999999999999999999999999999997 56899999999999999999
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
...+..+.+|...|..++|||+|++|++++.|.+-++||+.++..+....||...|.+++|.|||.+++||+.|..-|||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 88999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC-CCCeEEEEe
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR-SSPWAATGS 297 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s 297 (394)
|+++++++..+.+ |...|..+.|+|+|..+++|+.|++++|||++..+.+.++.+|..-|+.|.|+| .|.+|+|++
T Consensus 331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 9999999999887 678899999999999999999999999999999999999999999999999998 688999999
Q ss_pred CCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 298 MDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.|++++||...+..+. ...+|+..|.+++++++++++++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999998877554 4568999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=324.04 Aligned_cols=286 Identities=26% Similarity=0.459 Sum_probs=267.0
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.++|+||...|.++.|++|+++|+++|.||.+.|||.-+....+.++.+...|..++|+|.++++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc------ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEE
Q 016187 180 RA------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLAL 252 (394)
Q Consensus 180 ~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 252 (394)
+. +..+.+.+|.+.+.|+.|.+| ..|++++.|.++.+||+++++.+..+.+ |...|.+++++| +++.++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G---H~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG---HTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC---CcccEEEEecCCCCCCeEE
Confidence 54 456778999999999999985 5788999999999999999999988887 567899999999 999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCC---CCEEEEEEeC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE---DGVTCLMWLG 329 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~ 329 (394)
+|+-|+..++||++.+.+.+++.+|+..|++|.|.|+|.-+++|+.|++.++||++.........|. .+|++++|+.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999876554444443 5799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|++|++|..|.++.+||...++.+..|.||.+.|.+|..+|||..|+|||.|.++|||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=327.93 Aligned_cols=335 Identities=26% Similarity=0.505 Sum_probs=294.6
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee----Eeec------C----cccCEEEEEE
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SEIQ------G----HKDSVSSLAF 115 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~----~~~~------~----h~~~V~~v~~ 115 (394)
.++|.....++. |+.+|++.+|+|....++|+|+.|.+.++|++...... ..|+ + -...|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 345555555555 99999999999976668999999999999998641111 1111 1 2357999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT 195 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~ 195 (394)
+.+|..||+|+.||.+++|+. +|.+..++..|.++|.+++|+..|.+|++++.|+++.+||..++...+.+.-|..+-.
T Consensus 244 n~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 999999999999999999985 5777888999999999999999999999999999999999999999999999988867
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
.+.|-.+ ..+++++.|+.|+|+.+....+..++.+ |...|.++.|.|.+.+|++++.|++++||++........+.
T Consensus 323 DVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G---H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 323 DVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG---HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred ceEEecC-ceEeecCCCceEEEEEecCCCcceeeec---ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 7788644 5689999999999999988888888776 57789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCCC---------eEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 276 SHTDSIECIGFSRSSP---------WAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
+|...|..+.|+|.++ .+++++.|++|++||+....+... ..|..+|.+++|+|+++|+|+|+.||.|.+
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 9999999999999753 589999999999999988776655 489999999999999999999999999999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|+.++++.++.+.+ .+.|..|.|+.+|.+|..+-.|+.+++-|+.
T Consensus 479 ws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999987 5569999999999999999999999998864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=325.81 Aligned_cols=337 Identities=25% Similarity=0.447 Sum_probs=289.5
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.-.+.||...|+++.|-|..+..++|||.|.+|-++.-.-.++..+++.|...|+|+.|+|||.++||++.||++.+
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 45566788999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EeCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--------------------------
Q 016187 134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-------------------------- 184 (394)
Q Consensus 134 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-------------------------- 184 (394)
||-.+|+.+..+. .|.+.|..++|+|++..++++|.|.+++|||+.+.+++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999987 89999999999999999999999999999998654432
Q ss_pred -----------------eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE-----------EEEcC-----
Q 016187 185 -----------------NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-----------HVIRG----- 231 (394)
Q Consensus 185 -----------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~----- 231 (394)
+.+.||...|+++..+|++++|++|+.||.|.-|+..++..- ..+..
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 234689999999999999999999999999999998655321 00000
Q ss_pred ----------------------C--------CC--------------------------------cccCeEEEEEcCCCC
Q 016187 232 ----------------------H--------PY--------------------------------HTEGLTCLTISADST 249 (394)
Q Consensus 232 ----------------------~--------~~--------------------------------~~~~i~~~~~~~~~~ 249 (394)
+ |. ......+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 0 00 001245678899999
Q ss_pred EEEEEeCCCcEEEEECCCCcEE--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--eccCCCCEEEE
Q 016187 250 LALSGSKDGSVHMVNITTGKVV--SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCDHEDGVTCL 325 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~--~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~ 325 (394)
.+++|+.|+.|++|.+..+... ..+..|.++|+++++||++.|||++...+++.+||........ ..-|...|.|+
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 9999999999999999875533 3456799999999999999999999999999999998765432 23489999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 326 MWLGTSKYVVTGCVDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 326 ~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|+|+..++|+|+.|..|.||++.... .+.....|...|+.|.|- +...|+|.|.|..||+|++.
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 999999999999999999999986543 344556899999999996 66889999999999999975
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=301.14 Aligned_cols=291 Identities=23% Similarity=0.407 Sum_probs=264.0
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
.......+++||.+.|+++.|++ ++++|+|++.||.+.|||.-+......++-....|..++|+|.|+++|.|+.|...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34556789999999999999999 57789999999999999988877777788888999999999999999999999999
Q ss_pred EEEeCCCC------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCC
Q 016187 132 QIWDPSSG------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGK 204 (394)
Q Consensus 132 ~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 204 (394)
.||++.+. +....+.+|.+.+.++.|-+ ...|+++|.|.+..+||+++++.+..|.||.+.|.+++++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999865 34567889999999999998 45689999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIE 282 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~ 282 (394)
.+++|+.|++.++||++.+.+.+.+.+ |...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.. -..+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 999999999999999999999999887 567899999999999999999999999999999988877653 245799
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+++||..|++|..|..|.++.+||.-+. ......+|+..|+|+..+|+|.-|++||.|..++||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999997554 3445678999999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=298.43 Aligned_cols=289 Identities=25% Similarity=0.453 Sum_probs=250.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-----CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-----~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
...++.+|++.|+.++..+.+..++.+++.|.++.+|++.. |...+.+.||...|..+..++||++.+++|.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 35678899999999999998888999999999999999764 4567889999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-cCcCeEEEEECCC--CCeEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPD--GKTIC 207 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~l~ 207 (394)
+++||+.+|+....+.+|...|.+++|++++..+++||.|.+|++|++........... +...|+|+.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999876654443333 3789999999997 67999
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
+++.|++|++||+++.+....+. .|...++.+.++|||.+.++|+.||.+.+||++.++.+.++ .|...|.+++|+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred EccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 99999999999998876555544 46778999999999999999999999999999999998776 478999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcceec-----cC-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTC-----DH-----EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~-----~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|+..+|+.+. +..|+|||+......... +. .....+++|+++|+.|++|-.|+.|++|.+.
T Consensus 243 pnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 243 PNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9988877654 445999999765433211 11 2234678999999999999999999999764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=297.24 Aligned_cols=292 Identities=23% Similarity=0.388 Sum_probs=258.3
Q ss_pred eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC-----CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC
Q 016187 98 DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPS-----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
.+..++++|++.|++++..+.+ +.|++++.|.++.+|++. .|..+..+.+|...|..+..++++++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 4556899999999999999874 688999999999999875 4566788999999999999999999999999999
Q ss_pred eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC--CC
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--ST 249 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 249 (394)
++++||+.+++..+.|.||...|.+++|+||.+.+++|+.|.+|++|++..+. ..++.... +.+-|+|+.|+|. ..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~-~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDS-HREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCC-CcCcEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999999987544 44443322 2678999999998 78
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeC
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 329 (394)
++++++.|+++++||+++.+....+.+|+..++.+.+||||.++++|+.||.+.+||+..........|...|.+++|+|
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP 243 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999888878888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEee----cc-----cCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFS----GH-----RDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~h-----~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.-.|+. ..+..|+|||+.++.++..++ +. .-...+++|++||..|++|-.|+.|++|.+.-
T Consensus 244 nrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 244 NRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 8655554 456669999999999887664 22 22246789999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=287.46 Aligned_cols=291 Identities=24% Similarity=0.390 Sum_probs=259.4
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCCCEE
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVE 153 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~~~~v~ 153 (394)
..-+|+|+|.|.+||+|...+|.+.++++.....|..+.+.|+++.||+|+. ..||+||+++++ .+.++.+|...|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 4568999999999999999999999999977788999999999999998875 579999999875 5789999999999
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
.+.|+.+|+.+++|+.||+++|||++...+.+.+ .|.++|+++..+|+...|++|..+|.|++||+....+...+- +
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li--P 164 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI--P 164 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC--C
Confidence 9999999999999999999999999986666655 477999999999999999999999999999998876655443 3
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
.....+.++.+.|+|++++++...|..++|++... +++.+++.|...+..+.+||++++||++|.|.+++||++
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 34567999999999999999999999999998764 356778899999999999999999999999999999999
Q ss_pred CCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 308 QHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 308 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
.... .....+|...+..++|+.+++||++|+.|+.+++|++..++.++.+.||.....+++..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8762 23345788889999999999999999999999999999999999999999888787764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=332.64 Aligned_cols=332 Identities=25% Similarity=0.445 Sum_probs=285.9
Q ss_pred eeeeec-cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC--EEEEEeCCCcEEE
Q 016187 57 THIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~-h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~l~t~s~d~~i~v 133 (394)
.....+ |++||..++|+|.+ .++|+||.|+.++|||+..+.+...|+||.+.|.++.|+|+-. .|++|+.|+++++
T Consensus 97 irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence 333455 99999999999975 8999999999999999999999999999999999999999865 5899999999999
Q ss_pred EeCCCCce-EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-----------------------------
Q 016187 134 WDPSSGNL-KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----------------------------- 183 (394)
Q Consensus 134 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~----------------------------- 183 (394)
||+.+... +.++..|...|++++|.+++..+++++.|..+.+||+.+.+.
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 99986654 667778888899999998888888888888888887532100
Q ss_pred --------------------------------------------------------------------------------
Q 016187 184 -------------------------------------------------------------------------------- 183 (394)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (394)
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence
Q ss_pred ----------------------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc-----------------
Q 016187 184 ----------------------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE----------------- 224 (394)
Q Consensus 184 ----------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------------- 224 (394)
-+.+.||...|.+++...+|-+|+||+.|.++++|.+..+.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 00114777778888866677899999999999999663221
Q ss_pred -------------------eEEEEc--C---------------CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 225 -------------------NIHVIR--G---------------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 225 -------------------~~~~~~--~---------------~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.++.+. . ...|...|+|++++|+.+++++|+.|.+.++|++...
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 001100 0 1136778999999999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.+..+.+|+..|.||.|+|..+.+||+|.|.+|+||.+.+..+.... +|...|..+.|-.++..|++++.||.|++|+
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999999999999999999999988776554 6999999999999999999999999999999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.+..|+.++.+|++.|++++.++...+++||+.||.|.+|.
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=320.67 Aligned_cols=337 Identities=23% Similarity=0.365 Sum_probs=294.2
Q ss_pred CCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--eEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..|-....++.||-+.|.+|.|+. +.++|++|+.|.++++|.+...+- ...+.||+++|-++-|..+...|.|.+.|
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 445566788899999999999996 689999999999999999876554 56789999999999999999999999999
Q ss_pred CcEEEEeCCC-----------------------Cce-----------EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 129 GLVQIWDPSS-----------------------GNL-----------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 129 ~~i~vwd~~~-----------------------~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
|.+.+|.... ++. .+-+......+++.+||+..+.|++|-..|.+.
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 9999997651 111 011122336799999999999999999999999
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
+|.+.....++.+.-...+|..++|+..|.+||.|+.. |.+-||+..+..-+.... .|...+++++++|||+++++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEe
Confidence 99999999998888888899999999999999988775 899999998766554443 36778999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCC--CEEEEEEeCCC
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED--GVTCLMWLGTS 331 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~ 331 (394)
|+.||+|++||..++-++.++..|+..|+.+.|+..+..++++|.||+|+.||+.....-.....+. ...|++-.|.|
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999997665444433333 35788888999
Q ss_pred CEEEEEeCCC-eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 332 KYVVTGCVDG-KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 332 ~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+.+|+.|. .|++|++.||+++..+.||.+||.+++|+|++..|+|+|+|.+||+|++-
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 9999998875 69999999999999999999999999999999999999999999999963
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=321.46 Aligned_cols=328 Identities=20% Similarity=0.378 Sum_probs=294.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSSGN 140 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vwd~~~~~ 140 (394)
.....|++.+||| +..+||+|-..|...++.+....++..+.--..+|..++|+..|..||.|+.. |.+-||+..+..
T Consensus 263 ~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred ccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 3347899999999 67899999999999999999999999988777899999999999999988754 899999999988
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.+.+.++|...+++++++|+|.++++|+.||.|++||..++-++.+|..|.+.|+.+.|+..|+.+++.+.||+||.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
...++.+++... ......|++..|.|.++.+|+.|. .|++|++++|+++..+.+|++||.++.|+|.+..||++|.|
T Consensus 422 kRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 422 KRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred cccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 998888877643 223467899999999999999886 69999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-------------------
Q 016187 300 QKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG------------------- 359 (394)
Q Consensus 300 g~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------------------- 359 (394)
.+|++||+-.. .......+...+..+.|.|+|+.|++++.||.|.+||+..+.++..+.|
T Consensus 500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 99999998543 3344556777899999999999999999999999999987776644433
Q ss_pred -ccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 360 -HRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 360 -h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.....+.+.+++||.++++||..+.|+||++.+
T Consensus 580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 235689999999999999999999999999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=305.83 Aligned_cols=339 Identities=20% Similarity=0.343 Sum_probs=270.6
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--eEee----------------------------
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEI---------------------------- 103 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~~~~---------------------------- 103 (394)
.....++..|.-+++...++|. +.++|||...|+||||+....+. ..++
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3447778999999999999997 67999999999999999654321 1223
Q ss_pred ----------------cCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEE
Q 016187 104 ----------------QGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166 (394)
Q Consensus 104 ----------------~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (394)
.||...|.++.|-|... +++|||.|++|.+|+-...+...++..|..-|++++|+|+|..+++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 34555555555555443 3555555555555555445555566678889999999999999999
Q ss_pred ecCCCeEEEEeCCccceeeeec---ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-------------
Q 016187 167 GSEDSTVWMWNADRAAYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR------------- 230 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------- 230 (394)
++.||.+.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++||||+.+++.+.++.
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999888887 899999999999999999999999999999998765443321
Q ss_pred ---------------------------CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----------EE
Q 016187 231 ---------------------------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-----------VS 272 (394)
Q Consensus 231 ---------------------------~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-----------~~ 272 (394)
....|...|+++..+|+++++++|+.||.|.-|+..++.. +.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 0123678899999999999999999999999999865421 11
Q ss_pred Eecc---------------------------C-------------------------------------------CCCEE
Q 016187 273 SLVS---------------------------H-------------------------------------------TDSIE 282 (394)
Q Consensus 273 ~~~~---------------------------h-------------------------------------------~~~i~ 282 (394)
.+.. + .-...
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s 447 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS 447 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence 1100 0 00234
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCC---cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE-Eee
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSL---PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR-TFS 358 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~ 358 (394)
+++++|++..+|.|+.|+.|.||.+.... ......|..++++++|+|++.|||+|...+.|.+||+.+.+... .+.
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceee
Confidence 68899999999999999999999997643 22456799999999999999999999999999999998887633 455
Q ss_pred cccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
-|...|++|+|+|+..++||||.|-.|.||+++.+
T Consensus 528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 69999999999999999999999999999998754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=302.98 Aligned_cols=291 Identities=29% Similarity=0.475 Sum_probs=265.4
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
+...+.+.||..+|+.+-|+|. ..++++++.|.++++||..++++...|+||++.|..++|+..|++|++++.|-.+++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 3556778899999999999995 568899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 134 WDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 134 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
||..+ .+....+.+|...|.+++|-|.|.++++++.|.+|++|+..++-+++.+.+|...|..++.+.||..+|+++.|
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99876 45566778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
.+|++|-+.++++...++.| .-++.|++|.|. +.++.+++.|++|++||+.++.++.++.+|
T Consensus 257 qtl~vW~~~t~~~k~~lR~h---Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREH---EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred ceEEEEEeccchhhhhhhcc---ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999998777666654 446778877653 258999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..+|..++|+|.|+||+|+..|+++++||++...+... ..|+.-|++++|..+..|+++|+-|.++++|..
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999988765443 367888999999999999999999999999964
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=325.12 Aligned_cols=330 Identities=27% Similarity=0.470 Sum_probs=283.0
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
..+.+++++..|+ ..+|.+++....+++|.+.++++++.+++ |+.||..++|+|.|..|++|+.|+.++|||...+..
T Consensus 61 d~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 61 DEDEITALALTPD-EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred chhhhheeeecCC-ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3567899999996 56788899999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 142 KCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
.+.+++|.+.|..+.|+|+-+ +|++|..|+++++||+++. .++..+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 999999999999999999865 6899999999999999854 4578889999999999999999999999999999999
Q ss_pred cCCCCceEEEEc--------------------------------------------------------------------
Q 016187 219 NPKSGENIHVIR-------------------------------------------------------------------- 230 (394)
Q Consensus 219 d~~~~~~~~~~~-------------------------------------------------------------------- 230 (394)
|+.+.+....+.
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 974321100000
Q ss_pred ---------------------C---------------------------------------CCCcccCeEEEEEcCCCCE
Q 016187 231 ---------------------G---------------------------------------HPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 231 ---------------------~---------------------------------------~~~~~~~i~~~~~~~~~~~ 250 (394)
+ .+.|.+.|.++....+|-+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 0 0113444556665566779
Q ss_pred EEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCc----c------ee
Q 016187 251 ALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLP----R------ST 315 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~------~~ 315 (394)
+++|+.|.++++|.+..+. ++....+|+..|.+++++..+ ++|+++|.|.++++|++..... . ..
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 9999999999999884432 445567899999999998765 5899999999999999876211 1 12
Q ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..|...|+|++.+|+...++|||.|.+.+||++...+.+..|.||+..|++|.|+|..+.+||+|.|++|+||.+.+|
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 358899999999999999999999999999999999999999999999999999999999999999999999999987
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=301.69 Aligned_cols=290 Identities=24% Similarity=0.455 Sum_probs=271.5
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.....+.+|..+|+.+-|+|+-..+++++.|++|++||..+|++...+++|...+..++|+..|+++++++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 178 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
..+ .++++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.++-+++.+.+| .+-+..+....||.++++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h---~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH---SEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc---hHhEEEEEecCCeeEEEecCC
Confidence 987 5677888899999999999999999999999999999999999999998764 567999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCC---------------CCeEEEEeCCCcEEEEeCCCCCcce-eccCCC
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS---------------SPWAATGSMDQKLIIWDLQHSLPRS-TCDHED 320 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~ 320 (394)
|.+|++|-+.++++...+..|+.+|.|++|.|. ++++++++.|++|++||+.+..+.. ..+|..
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 999999999999888889999999999999763 3589999999999999999886654 458999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.|..++|+|.|+||+++..|+++++||+.+++|.+.+..|...|+++.|+.+.+|++||+.|.++++|..
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=291.31 Aligned_cols=288 Identities=26% Similarity=0.438 Sum_probs=254.8
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++.. -+-...+++|.+.|..+.|.++++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 4456789999999999999999999999999999999542 344567789999999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
.++++.++.+++|..-|+.+.-..-| .++.|++.||++++||+++...++++. ....++++.|..++..+.+|+-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEecccccceeeccc
Confidence 99999999999999999988744444 467799999999999999887776654 2346899999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-----cc--CC--CCEEEEEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-----CD--HE--DGVTCLMW 327 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~--~~--~~v~~~~~ 327 (394)
|+.|++||++.+..+..+.+|.++|+.+..+|++.++.+-+.|.++++||++...+... .+ |. .....++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999976533222 12 22 23556789
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+|++.++.+|+.|..+++||..+..++..+.||.+.|+++.|+|..+.|.+++.|.+|.+=++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999999999999999999999999999999999999999987543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=274.94 Aligned_cols=269 Identities=21% Similarity=0.377 Sum_probs=238.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEE
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCG 197 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~ 197 (394)
-+|+|+|.|.+||+|...+|.+..+++.+.+.|+.+...|+++.|++++. ..|++||+++.. ++..+.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999999999999999999998887654 689999998754 578899999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-c
Q 016187 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-S 276 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~ 276 (394)
.|..+|+++++|+.||++||||++...+.+.++ +..+|+++..+|+...|++|..+|.|++||+....+...+. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 999999999999999999999999866554444 45789999999999999999999999999999886665553 3
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-------ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP-------RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
...+|.++...|+|.+|+.+..-|+..+|++..... .+...|+.-+..+.++|+++|||++|.|.+++||++.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 456899999999999999999999999999854321 1234577788999999999999999999999999998
Q ss_pred CC-eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 350 SG-DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 350 ~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+. +....+++|...++..+||.|++||++|+.|+.+|+|++..-
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 87 666789999999999999999999999999999999998754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=299.42 Aligned_cols=299 Identities=26% Similarity=0.483 Sum_probs=254.4
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---eeeEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
...|.+..+++..|+++|+-+.|+|+ +.+|||++.|.++-+|.+... ++..++.||..+|..+.||||.++|++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 45678888999999999999999995 679999999999999997533 45778999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECCCCC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGK 204 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 204 (394)
.|..+++||+.+|+....+... .-.+.+++|.|++..+++|+.|+++.+|+++... +..+.+-. ..|.+++.++||+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999999999988776543 5688999999999999999999999999997554 34455443 5688999999999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
++++.+.|..|++++..+......+. ...+++++++|.+++++++.=.+..+++||+...+.+..+.+|..
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq----- 438 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ----- 438 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-----
Confidence 99999999999999987665543333 245799999999999999999999999999998888888877753
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 285 GFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL-GTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+.+++- + +|. .+..++++||.|+.|+||+..+|+++..+.||...
T Consensus 439 -----~~fiIr----------------------------S-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 439 -----GHFIIR----------------------------S-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred -----cceEEE----------------------------e-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 222211 1 122 34579999999999999999999999999999999
Q ss_pred eeEEEEccC-CCEEEEEeCCCcEEEEeccCC
Q 016187 364 IQAISVSAH-QDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 364 v~~l~~~~~-~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|++|+|+|. ..++||+|+||+||||....+
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999995 568999999999999998754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=273.82 Aligned_cols=285 Identities=27% Similarity=0.474 Sum_probs=240.9
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---eeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
..+.+.||++.|+.++|||.-+.+|||+|.|+.|++|+...+ .++..+ .+|+..|++++|+|.|++||+||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 467788999999999999954679999999999999998743 344444 5799999999999999999999999999
Q ss_pred EEEeCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCeEEEEECCCCCeE
Q 016187 132 QIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 132 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.||.-..+ +.+.++++|...|.+++|+++|.+||+++.|..+++|..... .+...++.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987655 456789999999999999999999999999999999998743 4667889999999999999999999
Q ss_pred EEEeCCCcEEEEcCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 207 CTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
++++.|.+|++|+-..+ .+...+.+ |...+.+++|++.|..+++++.|++++||-+.+.-. ..|..+++.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~ 238 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYD 238 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEe
Confidence 99999999999986633 34566665 455799999999999999999999999998653211 237788999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCC--c------ceeccCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC
Q 016187 284 IGFSRSSPWAATGSMDQKLIIWDLQHSL--P------RSTCDHEDGVTCLMWLGT-SKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~------~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~ 349 (394)
++|. ...+++++.|+.|++|...... + .....|+..|+++.|.|. .++|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 5579999999999999765321 1 122358889999999995 7899999999999999753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=296.31 Aligned_cols=279 Identities=25% Similarity=0.453 Sum_probs=254.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
..|++|+|+. ++.+||+|+.||.+++|+. .+.++.+|..|+++|.++.|+..|.||++++.|+++.+||..+|.....
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 5899999997 5789999999999999996 5777889999999999999999999999999999999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
+..|..+-..|.|-.+ ..+++++.|+.|+++.+....++.++.+|.++|.++.|.|.|.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 8888777455666543 468999999999999999999999999999999999999999999999999999999988777
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 295 (394)
..+.+.. |...|..+.|+|++ ..+++++.|+++++||+..+.++.++..|..+|++++|+|++.++|+
T Consensus 393 ~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 393 SVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred chhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 7666654 56779999999875 47899999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|+.||.|.||+++.........-...|..++|+.+|.+|.++-.||.+++.|++
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999988777777777889999999999999999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=303.03 Aligned_cols=281 Identities=22% Similarity=0.408 Sum_probs=249.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
-+-+|..|.|.|+|+.|++|+..|.+.+|+..+......++.|..+|+++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hH
Confidence 35579999999999999999999999999986665555678899999999999999999999999999999987544 34
Q ss_pred eeccc-CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 186 MFSGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 186 ~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
.+++| ...|++++|+|+...|++++.||+|+|||....+.-..+++ |.-.+.++.|+|...++++|+.|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G---HgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG---HGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc---CCCCcceeccCCccceeEEccCCceeEeec
Confidence 44444 58999999999999999999999999999988776666666 456799999999999999999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCC-CCEEEEEeCCCe
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGT-SKYVVTGCVDGK 342 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~ 342 (394)
.+++.++.++..|...|..+.|+|+++||+++|.|..+++||++.. ......+|...|+++.|+|- ..++++|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999843 33445679999999999995 468889999999
Q ss_pred EEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 343 VRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 343 i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
|..|.+...+.+..+ .+|.+.|++|+|+|=|.+|++|+.|.++|+|.-
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999998866666665 489999999999999999999999999999963
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=289.17 Aligned_cols=290 Identities=24% Similarity=0.435 Sum_probs=264.6
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
.|.+...++.||.+.|.||++.| +...||||+.|++++|||+.++++..++.||...|+.+++|+-..||++++.|+.|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred CcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 45677788999999999999999 46799999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
+.||+...+.+..+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+.||..+|..+.+.|....+++|+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
|++||+||++.|+....+.. |...+++++.+|....+++++.| .|+-|++..|..+..+.+|...|++++...++
T Consensus 298 D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 99999999999998877764 56789999999999999988876 48999999999999999999999999998776
Q ss_pred eEEEEeCCCcEEEEeCCCCCcce---------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRS---------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
++++|+..|.+.+||.+...... ....+.+|.+.+|...+..|++|..|.+|++|.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 67889999999999987642111 123456789999999999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=314.54 Aligned_cols=306 Identities=25% Similarity=0.408 Sum_probs=256.6
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-------------------------------eeE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------WAS 101 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-------------------------------~~~ 101 (394)
|.-...++..-...++|..|+++ ..+||-|-.|..|++|.+...+ ...
T Consensus 367 pSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 33444445444568899999984 5689999999999999986311 224
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++-||.++|+.+.|+|+.++|+++|.|+++|+|.+.+...+..+++|..+|..+.|+|.|.++|++|.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 57899999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
..++.+.+|-+.|.|++|+|+..++++||.|.+||+||+.+|..+..+.+ |..+|++++++|+|++|++|+.||.|+
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEE
Confidence 99999999999999999999999999999999999999999999999887 678899999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+||+.+++++..+.+|++.|.++.|+.++..||+|+.|.+|++||+..........|- + ...+
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~--------~---------~~~~ 665 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHI--------S---------TSNS 665 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccc--------c---------cccc
Confidence 9999999999999999999999999999999999999999999998754322111110 0 0000
Q ss_pred eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 342 KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 342 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
.+.-=+-.+.-++..|..-..+|..|.|....-.|+.|
T Consensus 666 ~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 666 AITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 00000113455677777777789999998765444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=287.06 Aligned_cols=288 Identities=25% Similarity=0.417 Sum_probs=261.1
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
+-+.+.||.+.|+|+++.|..+.|+||+.|++++|||+.+|+++.++.+|-..|..+++++...|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+..+.++.+.||-+.|.|++.+|.-..|++|+.|.++||||+++...+..+.+ |...|..+.+.|....+++|+.|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeecCCCceEEecCCc
Confidence 99999999999999999999999999999999999999999999999999987 467799999999888999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|++||++.|+...++..|...+.+++.+|....+|+++.|. ++-|++... ......+|...++++....|+ ++++|
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence 999999999999999999999999999999999999998875 889998654 344466788889999877665 78899
Q ss_pred eCCCeEEEEECCCCeEEEEeec--------ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSG--------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.+|.+.+||.++|-..+.+.. -...|.+.+|...+..|+||..|.+|++|.-+
T Consensus 378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 9999999999998866554421 24568899999999999999999999999743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=294.29 Aligned_cols=286 Identities=34% Similarity=0.641 Sum_probs=262.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~ 180 (394)
.++.+|.++|++++|+|++++|++++.|+.|++|++.+++....+..+...+..+.|+|+++++++++.++.+++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46789999999999999999999999999999999998888888888889999999999999999999999999999998
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
++.+..+..|...+.++.|+|+++++++++.++.|++||+.+++....+.. |...+.++.++|++.++++++.++.|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 877888889999999999999988999988899999999998877766653 55679999999999999988889999
Q ss_pred EEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeC
Q 016187 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
++||+++++.+..+..|...+.++.|+|++..+++++.++.+++||++........ .|...+.++.|+|++.++++++.
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 99999999888888889999999999999999999999999999999876555444 67789999999999888888888
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+|.|++|+..+++.+..+.+|...|.+++|++++++|++++.||.|++|+
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=269.62 Aligned_cols=288 Identities=24% Similarity=0.420 Sum_probs=243.5
Q ss_pred eeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce---EEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 99 WASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL---KCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
.+..+++|++.|..++|+|- |..|||||.|..|++|+...+.. ...+ .+|+..|+.++|+|.|++|++||-|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 35678999999999999998 88999999999999999885432 2222 3688999999999999999999999999
Q ss_pred EEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
.||.-..+ +++..+.||...|.|++|+++|++||+++.|++|-||.+..+.........+.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987644 5678899999999999999999999999999999999988665544444334467789999999999999
Q ss_pred EEEeCCCcEEEEECC---CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 252 LSGSKDGSVHMVNIT---TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~---~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
++++.|.+|++|.-. .-.+..++.+|+..|.+++|++.|..|++++.|++++||...... ...|...+..+.|.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec
Confidence 999999999999865 336889999999999999999999999999999999999865322 23466778889998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC------eEEE-EeecccCceeEEEEccC-CCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSG------DCVR-TFSGHRDAIQAISVSAH-QDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw~~~ 391 (394)
...|++|+.|+.|++|--... +++. .-..|...|++++|.|. .+.|+|||+||.|++|.+.
T Consensus 243 --~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 568999999999999964322 1121 23468999999999995 7899999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=304.81 Aligned_cols=296 Identities=20% Similarity=0.389 Sum_probs=255.5
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.|-..++.+.||+..|.++.|.|...+||+++|.|+.|+||++-. +++++++.||..+|..++|+++|..++|+|.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 466678889999999999999997789999999999999999865 8899999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
|++||+++|+++..+.. ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999999887763 4568899999998 799999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccCCCCEEEEEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV---SSLVSHTDSIECIGF 286 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~h~~~i~~v~~ 286 (394)
+.|++++||+.+.+-.++.+.....| .+.|+..+|+++++++-+.|..|.++.+...-.+ ..+.+|..
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v------- 431 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV------- 431 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-------
Confidence 99999999999877655544333223 4678899999999999999988888875422111 11222210
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
.+.-..+.|+|||.+|++|..||.+.+||.++.+++..+++|.+++..
T Consensus 432 --------------------------------aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 432 --------------------------------AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred --------------------------------cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 112345789999999999999999999999999999999999999999
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEe
Q 016187 367 ISVSAHQ-DFLVSVSLDGTARVFE 389 (394)
Q Consensus 367 l~~~~~~-~~l~s~s~dg~i~iw~ 389 (394)
+.|+|.. ..+||||.||.|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 9999975 5799999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=299.32 Aligned_cols=279 Identities=22% Similarity=0.425 Sum_probs=251.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
-+|+.|.|.|. ++.|.+|+..|.+.+|+..+-.+...+++|..+|+++.|+++|.++++|+.+|.||+|+.+-...+..
T Consensus 97 c~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred cceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 47999999995 56778999999999999877777778899999999999999999999999999999999875555444
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
...|...|++++|+|+...++++|.||+|+|||....+....+.||.-.|.+++|+|...+|++|+.|..|++||+++++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 44455899999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEE
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLI 303 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~ 303 (394)
++.++.+ |...|..+.|+|++++|++++.|..++++|+++.+.+..+++|...+.++.|+|-. .+|.+|+.||.|.
T Consensus 256 cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 256 CLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 9888765 56679999999999999999999999999999999999999999999999999964 5889999999999
Q ss_pred EEeCCCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 304 IWDLQHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 304 iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.|.+.... ......|...|++++|+|=|-.|++|+.|.++++|.
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99986433 333457889999999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=312.38 Aligned_cols=295 Identities=29% Similarity=0.539 Sum_probs=262.3
Q ss_pred eeeeecc-CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~h-~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
...+.+| ...|.++.|+|+ +..+++++.|+.+++|+....+ ....+.+|...|+.++|+|+|+++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 4445454 789999999996 4569999999999999997777 77788999999999999999999999999999999
Q ss_pred EeC-CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 134 wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
||+ ..+..+.++.+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|++++++|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
+.|++||+.++. +...+..+.... .++++.|+|++.++++++.|+.+++||+..++.+..+.+|...+.|+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~------ 382 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI------ 382 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE------
Confidence 999999999998 456666654444 79999999999999999999999999999999888887775442111
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc-cCceeEEEE
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH-RDAIQAISV 369 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 369 (394)
.+...++.+.++++|+.|+.|++|+..++..+..+.+| ...|..+.+
T Consensus 383 --------------------------------~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 383 --------------------------------FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred --------------------------------ecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 11223678899999999999999999999999999999 889999999
Q ss_pred ccCCCEEEEEe--CCCcEEEEecc
Q 016187 370 SAHQDFLVSVS--LDGTARVFEIA 391 (394)
Q Consensus 370 ~~~~~~l~s~s--~dg~i~iw~~~ 391 (394)
++..+++++++ .|+.+++|..+
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 79999999754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=285.04 Aligned_cols=286 Identities=32% Similarity=0.613 Sum_probs=258.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
..+.+|.++|++++|+|+ +.+|++++.|+.+++|++.+++....+.+|...+..+.|+|++++|++++.|+.|++|++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 457799999999999995 5688899999999999999888888899999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+++....+..+...+.++.|+|++.++++++.++.+++|++.+.+....+..|...+.+++|+|+++++++++.|+.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 88888888888889999999999888998888999999999988888888889999999999999999999888999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s 297 (394)
||+++++.+..+.. +...+.++.++|++..+++++.++.|++||++.++.+..+..|...+.++.|+|++.++++++
T Consensus 162 ~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 162 WDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99998877766653 455799999999999999999999999999999998888888999999999999988999988
Q ss_pred CCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 298 MDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.++.+++|++....... ...|...+.++.|++++++|++++.||.|++|+
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 89999999998644332 336778899999999999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=310.66 Aligned_cols=277 Identities=23% Similarity=0.425 Sum_probs=242.6
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++..-...++|..|++|+.+||.|-.|..|++|.+...++ ..+++.. + -..+=+.+.|-.+.+.|....
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~-------~---l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDAS-------D---LSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccchh-------h---hccccccccchhhhhccccCC
Confidence 3444456799999999999999999999999999875532 2222211 1 111224455555777777777
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
...+.+-||.++|..+.|+|+.++|++++.|+++|+|.+.+..++...++ |..+|..+.|+|-|.++++++.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---H~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---HLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC---CCcceeeEEecCCceEEEecCCCceee
Confidence 66777889999999999999999999999999999999999998888776 567899999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
+|.....++++.+.+|-..|.|+.|+|+..|+++||.|.++++||+.+.. .+.+.+|..+|++++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999998764 45667999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|.|++||+.+++++..+.+|.+.|.+|.|+.+|..||+||.|.+|++||+..
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999999753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=268.52 Aligned_cols=287 Identities=22% Similarity=0.398 Sum_probs=250.7
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC-CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
..+...+.||+++|+.+.|+| ++..|||||.|..|.+|++. .-+-...+++|.++|..+.|.+|++.++++|.|.+|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 345666889999999999999 56789999999999999953 3455567889999999999999999999999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
.||..+|+....+++|..-|+.+.-...|. ++.+++.|+++++||+++...++++. ...+++++.|...+..+.+|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 999999999999999999999888544454 66788999999999999888777653 4567899999999999999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CcEEEEeccCCC----CEEE
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----GKVVSSLVSHTD----SIEC 283 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~h~~----~i~~ 283 (394)
|+.|++||++.+..++.+.+ |.+.|+.+..+|+|.++++-+-|.++++||++- .+++..+.+|.- ....
T Consensus 195 dn~ikvWd~r~~d~~~~lsG---h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSG---HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred cCceeeeccccCcceEEeec---ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99999999999999999887 578899999999999999999999999999874 345666766532 3456
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 284 IGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
.+|+|++.++..|+.|..+.+||.... ......+|...|+++.|+|...+|.+++.|.+|++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 789999999999999999999998774 34455689999999999999999999999999986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=319.63 Aligned_cols=299 Identities=18% Similarity=0.343 Sum_probs=250.8
Q ss_pred CCeEEEEEcCCCeeeEe-----ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----c----eEEEEecCCCCE
Q 016187 86 DDKGFFWRINQGDWASE-----IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----N----LKCTLEGPGGGV 152 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~-----~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~----~~~~~~~~~~~v 152 (394)
+|-+++|+....+.... +.+|...|.+++|+|+|++||+|+.|++|+||+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56678888776554433 4458999999999999999999999999999997532 1 112223 34678
Q ss_pred EEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 153 EWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 153 ~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
.+++|++. +.+|++++.|++|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999875 67999999999999999999988889999999999999997 78999999999999999999988877765
Q ss_pred CCCCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 231 GHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
. ...+.++.|+ +++.++++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus 616 ~----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 616 T----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred c----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 3 2468889884 579999999999999999998865 567788999999999997 67899999999999999986
Q ss_pred CC-------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------ecccCceeEEE
Q 016187 309 HS-------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-------------SGHRDAIQAIS 368 (394)
Q Consensus 309 ~~-------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~ 368 (394)
.. ......+|...+.++.|++++++|++|+.||.|++|+......+..+ ..|...|.+++
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 42 22334578888999999999999999999999999997665443222 23556799999
Q ss_pred EccCCCEEEEEeCCCcEEEEec
Q 016187 369 VSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 369 ~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
|++++.+|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=290.00 Aligned_cols=285 Identities=23% Similarity=0.363 Sum_probs=257.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+..|++.|.+|.+||+.+-+|+ +=..|.+.||+.++...+..+.-..-+|++..|-+-.+.+++|+.|..|+||+.
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la-~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILA-ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEE-eeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 4456669999999999999876665 567899999999999999999988999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCCCc
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT 214 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 214 (394)
++++.+..+..|.+-|++++.||...+++++|.|-+|++|+.+.. .+.+.+.||...|.+++|.| |.+.+||++-|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 999999999999999999999999999999999999999999765 67788999999999999999 6789999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 292 (394)
|+||.+....+..++++ |..+|+|+.+-+- ..++++|+.|.+|++||.++..++.++.+|+..|+++.|+|.-++
T Consensus 165 VKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 99999988888888876 6789999999774 479999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
++|||.||+++||+..+........ .-.++.|++..+.++.++.|...|.|.+
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999987765444332 3467999999998889999988887654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=290.38 Aligned_cols=321 Identities=21% Similarity=0.357 Sum_probs=271.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
..+|+|+.-+| +..+||.|..||.|++|+..+++...++.||+..|+++.|+..|..|++||.|+.|.+||+-...-+.
T Consensus 65 k~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 65 KAEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred cceEEEeeccC-CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 35899999888 56789999999999999999999899999999999999999999999999999999999997766677
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-------------------------------------
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM------------------------------------- 186 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~------------------------------------- 186 (394)
.+.+|.+.|+...|....+++++.+.|+.|++||+.+..+..+
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 7788877777776666666777777777777776643221111
Q ss_pred --------------------------------------------------------------------------------
Q 016187 187 -------------------------------------------------------------------------------- 186 (394)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (394)
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence
Q ss_pred -----------------------------------------------------------------ecccCcCeEEEEECC
Q 016187 187 -----------------------------------------------------------------FSGHGSSVTCGDFTP 201 (394)
Q Consensus 187 -----------------------------------------------------------------~~~h~~~v~~~~~~~ 201 (394)
+.||...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 025666677777777
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i 281 (394)
+...++||+ .+++++|+..+.+++.++.. ..+.+..|-|.++++++|...|.+.+||+.+...+.++.+|.+.|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKCIRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcceeEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 766666654 47788999888888887753 357788999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCC------Ccc-------eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHS------LPR-------STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~-------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..++.+|++..+++||.|.+|++||..-. +.+ .....++.|.|+.++||+++|+.+--|.+|+||-+
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 99999999999999999999999996311 101 12334567999999999999999999999999999
Q ss_pred CCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 349 LSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 349 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.+-+..-++-||.-||.+|.++||+++++|||.|++|+||-++
T Consensus 538 DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 538 DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 9999988999999999999999999999999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=252.76 Aligned_cols=292 Identities=23% Similarity=0.342 Sum_probs=254.6
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
.+.|.+...++..|.++|.++.|+- ++++..|+|.|+++++|+...+.++.++.||...|..++.+.|...|++|+.|.
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence 3466777888999999999999997 567888999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc--cceeeeecccCcCeEEEEECCCCCeEE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
.+.+||+++|+....+.+|.+.|+.++|+.+...+++|+.|.++++||-++ .++++.+......|.++..+ +..++
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 999999999999999999999999999999999999999999999999764 46778887778888888775 56899
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
+|+.||++|.||++.|+...-. ...+|+|++++++++..++++.|++|++.|-.+|+++..+.+|...-..+
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl--- 231 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL--- 231 (307)
T ss_pred eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee---
Confidence 9999999999999998754332 34579999999999999999999999999999999999888885432211
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc-eeE
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA-IQA 366 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~ 366 (394)
.+++......+++|+.||.|++||+....++..+..|... |.+
T Consensus 232 ------------------------------------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 232 ------------------------------------DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred ------------------------------------eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 1123445568899999999999999999999999988888 799
Q ss_pred EEEccCCCEEEEEeCCCcEEEEe
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.++|....|+++...+ +..|.
T Consensus 276 l~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eecccCccceeEecCCc-eecee
Confidence 99999988888877554 45554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=265.61 Aligned_cols=288 Identities=19% Similarity=0.316 Sum_probs=247.6
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
+.+|..|+++|.+++.+|+.++++||+.|..-.+|+..+|+....+.+|+..|+++.|+.++.+|++|..+|.+++|...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
++.....+......+..+.|+|.+..|+.|+.||.+-+|.+.++...+.+.+ |..++++-.|.|+|+.++++..||+
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC---CCCCcccccccCCCceEEEEecCce
Confidence 9888777766777888899999999999999999999999988766777766 5678999999999999999999999
Q ss_pred EEEEECCCCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc---------eeccCCCCEEE---EE
Q 016187 260 VHMVNITTGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR---------STCDHEDGVTC---LM 326 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~~~~~~v~~---~~ 326 (394)
|++||+.+++++..+..- .....++.++..+..+..|+.++.+++-+..+.+.. ....++..+.| +.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999887632 345678888888888999999988888776543221 12233444444 45
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+..-++.|+|+.||+|.|||+...++.+.+. |..+|..+.|-+ ..+|++++.||.||+||..+
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDART 357 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence 55566789999999999999998777665544 888999999988 78999999999999999764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=296.57 Aligned_cols=314 Identities=21% Similarity=0.365 Sum_probs=261.2
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
..-+..|..++|||..+ .+.++=..|+|++||+.-+.++..+.+|.++|+.++|+|.+.++++|+.|.+|+||+..+.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 33456789999999766 56677899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
++.++.+|-+.|+.+.||+.-..++++|.|.+|+||+.++.+++..+.||...|.|.+|+|....++|+|-|.+|||||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-+.-. .... ...+.+.. .+ +.-=+-|+.|-. +...+.+|...|+-++|+|.-++++||+.|.
T Consensus 165 sGLRkk~-~~pg-~~e~~~~~---~~-~~~dLfg~~DaV----------VK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 165 SGLRKKN-KAPG-SLEDQMRG---QQ-GNSDLFGQTDAV----------VKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred cchhccC-CCCC-Cchhhhhc---cc-cchhhcCCcCee----------eeeeecccccccceEEecCCcceEEecCCcc
Confidence 6432211 1100 00000000 00 000011222222 2345678999999999999999999999999
Q ss_pred cEEEEeCCCCC---cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEE
Q 016187 301 KLIIWDLQHSL---PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 301 ~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 377 (394)
.|++|.+.... .-...+|...|+|+.|+|....+++.|.|++|+|||+...+.++.|.-.++.-+.++.+|..+++|
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA 308 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee
Confidence 99999986542 223357999999999999999999999999999999999999999987788899999999999888
Q ss_pred EEeCCCcEEEEeccC
Q 016187 378 SVSLDGTARVFEIAD 392 (394)
Q Consensus 378 s~s~dg~i~iw~~~~ 392 (394)
.|- |+-+-+|.++.
T Consensus 309 AgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 309 AGH-DSGMIVFKLER 322 (1202)
T ss_pred eec-CCceEEEEEcc
Confidence 555 55567777763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=283.79 Aligned_cols=324 Identities=25% Similarity=0.397 Sum_probs=277.8
Q ss_pred CcEEEEEEcCCCCc--EEEEecCCCeEEEEEcCC-Cee--------eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 65 DEVYSVACSPTDAT--LVATGGGDDKGFFWRINQ-GDW--------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 65 ~~v~~~~~~p~~~~--~lasg~~d~~v~~w~~~~-~~~--------~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.++.+-|..+. .|++ -.+.++.++.++. ++. ...+.||...|+++++|.+...+++|+ .+.+++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence 45666777664332 3333 4567888887764 211 135689999999999999988888776 468999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+..+.+++.++... .+.+..|-|.++++++|...|.+.+||+.+...+...++|.+.+..++.+||++.+++|+.|.
T Consensus 399 Wn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 999999999888653 788999999999999999999999999999988888999999999999999999999999999
Q ss_pred cEEEEcCCC-----CceEEEEcCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 214 TLRVWNPKS-----GENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 214 ~i~vwd~~~-----~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
+|++||..- +.+.+.+..+. ...+.+.|+.+|||+++++++=.|.++++|-+.+.+..-++.+|.=||.|+
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm 556 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM 556 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE
Confidence 999999641 11111111110 124579999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 285 GFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
.++|++.+++|||.|..|++|-+..+.+.. ...|.+.|.++.|.|...++++++.|+.|+.||....++++.+.+|...
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 999999999999999999999998876654 5689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|++++.+|+|.+++|+|.|.+||+|.-.+
T Consensus 637 v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999998543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=258.55 Aligned_cols=286 Identities=22% Similarity=0.306 Sum_probs=247.8
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
.++||..+++.+.|+.+|.+|++++.|.+..||-..+|+.+.++.+|.+.|+++....+.+.+++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeC-----CCcEEEEcCCCC-------ceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
+.+..++ -..+|..+.|+++|++++.+.. .+.|.++|++.. ++...+. .+...++.+.|+|-+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPDSKITSALWGPLGE 160 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCccceeeeeecccCC
Confidence 9988875 4668999999999998877653 467999998843 3333433 3457899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 250 LALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
++++|..||.|.+||+++|+ .+.+...|...|+.++++|+..+++++|.|.+.++||+.+....+...-..+|++.+++
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 99999999999999999985 45666789999999999999999999999999999999988887777788899999999
Q ss_pred CCCCEEEEEeCCCe--------------EEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGK--------------VRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|-...++.|+.... .++|++-..+.+.+++||-++|++|+|+|+|+..+||+.||.||+..++
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 98877776653211 2333333345567889999999999999999999999999999998654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=272.41 Aligned_cols=273 Identities=26% Similarity=0.505 Sum_probs=237.6
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
-.+.|||+.+.. ..++||..|.+|++||.++.++...+.||++.|.|+.|. .+.+++||.|.+|+|||+++|+.+
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 357899999853 357899999999999999999999999999999999985 459999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
.++-+|.+.|..+.|+ +.+++++|.|.++.+|++.... +.+.+.||...|..+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999997 4589999999999999987543 345678999999999885 56999999999999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.+++.+.++.+ |..+|.|+.+ .++++++|+.|.+|++||+..|.++..+++|++-|.|+.|. .+.+++|+.|
T Consensus 347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 999998888876 5677888775 48999999999999999999999999999999999999997 4579999999
Q ss_pred CcEEEEeCCCCCcc----------eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 300 QKLIIWDLQHSLPR----------STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 300 g~i~iwd~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
|+|++||+...... ....|.+.|..+.| |...+++.+.|.+|.|||...+-.
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 99999998654221 22357778888877 556899999999999999876643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=281.63 Aligned_cols=285 Identities=20% Similarity=0.338 Sum_probs=261.7
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.+.+..|.+.|.++.|+|....++++-.+|.|.||+..+...+..+.-..-+|+...|-+..+.+++|+.|..|++|+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 44567799999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCC
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKD 257 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~d 257 (394)
+...++.|.+|.+.|.|++.+|...+++|+|.|-+|++||...+ .+.+++.+ |...|.+++|.| |.+.+++++.|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG---HEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC---cceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999998765 34556666 456799999999 56789999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 334 (394)
++|++|.+.+..+..++.+|...|+|+.+-+. .++|+||+.|.++++||.++..+... -+|...|+++.|+|.-..+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 99999999999999999999999999999764 58999999999999999998876654 4799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
++|+.||+++||+..|-++...+...-+.|++++-.+..+.++.|.++|.|.+
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999888889999999999999999999987754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=306.13 Aligned_cols=282 Identities=18% Similarity=0.380 Sum_probs=237.8
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----e----eeEeecCcccCEEEEEEcCC-CCEEEEEeCCCc
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----WASEIQGHKDSVSSLAFSMD-GQLLASGGLDGL 130 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~----~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~ 130 (394)
+.+|.+.|++++|+|+ +.+|||||.|++|+||+.... . ....+. +...|.+++|+|. +.+|++++.|++
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 3458999999999995 678999999999999997532 1 122333 3467999999874 789999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEEC-CCCCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s 208 (394)
|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999999889999999999999997 6789999999999999999988887777654 578899995 57999999
Q ss_pred EeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccCCCCE
Q 016187 209 GSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSI 281 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~h~~~i 281 (394)
|+.||.|++||+++.+ .+..+.+ |...|.++.|. ++.++++++.|++|++||+.. .+.+..+.+|...+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 9999999999998765 3444443 56789999997 678999999999999999974 35778899999999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--------------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--------------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+++|+|++.+|++|+.|++|++|+.....+.. ...+...|.+++|+|++.+|++|+.+|.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 999999999999999999999999975432211 122445699999999999999999999999998
Q ss_pred C
Q 016187 348 S 348 (394)
Q Consensus 348 ~ 348 (394)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 5
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=273.25 Aligned_cols=274 Identities=26% Similarity=0.455 Sum_probs=236.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..+.|+|+++. ...+++|..|.+|+|||.++-..+..+.+|.+.|.|+.|.. +++++||.|.+|++||++++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 45789999985 56899999999999999999999999999999999998864 499999999999999999999999
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
.+-+|...|..+.|+ ..++++++.|.++++||+.....+...+....|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999997 4599999999999999997765332222222356678887775 569999999999999999
Q ss_pred CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
.++..+.++.+|...|.|+.+. ++++++||.|.+|++||+..+.+ +...+|+.-|.|+.| +.+.+++|+.||+|+
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 9999999999999999998875 78999999999999999987644 445689999999998 557899999999999
Q ss_pred EEECCCCe---------EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 345 VWDSLSGD---------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 345 iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+||+.++. |+..+..|.+.|..+.| |...+++++.|.+|.|||+.++
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99987654 44556779999999998 4588999999999999998765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=256.32 Aligned_cols=286 Identities=24% Similarity=0.340 Sum_probs=256.9
Q ss_pred eEeecCcccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 100 ASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~---~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
..+..||+.+|-.++||| +|-+|++++.|+.-.+-+-.+|..+.++.+|.+.|....++.+....++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 346789999999999984 89999999999999999999999999999999999999999888888999999999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
|.-++..+..+ .|...|..++|+.|.++|++|+.++.+||||+...+. ...+.+ |..+|..+.|....+.+++++
T Consensus 87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g---htg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG---HTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC---CCCcceeEEEeccCceEEeec
Confidence 99988877776 4888999999999999999999999999999876542 333443 677899999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
.|++||+||.++++.++++. -..+|+++-+++++.++.++ ..+.|++||..+.........+..|.+...+|+...++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 99999999999999999886 45789999999999877554 56789999998877777777778899999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|+.|+.++.||..+++.+..+ ++|.++|.+|.|+|+|...|+||.||+||+|...
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 9999999999999999999987 8999999999999999999999999999999853
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=252.94 Aligned_cols=290 Identities=21% Similarity=0.371 Sum_probs=257.5
Q ss_pred eeeeccCCcEEEEEEcCC--CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 58 HIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~--~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.+-.||+.+|-.++|+|- ++.+|+|++.|+.-++-+-+++.++.++.||++.|++..+..+..+.|+++.|.+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 456799999999999983 578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
.-+|..++.+. |..-|..++|+.+.++|++|+.+.-+++||+++.+ ....+.+|.+.|..+-|....+.+++.+.|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999988876 66678999999999999999999999999998653 45678899999999999988899999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
||+||.+++..++.+.. ..+++++-++++|.++.++ ..++|.+||..+-.+++.+.. ...|++..++|+..+++
T Consensus 167 VRLWD~rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF----NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred eEEEEeccCcEEEEEec----CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEE
Confidence 99999999999888863 4568999999999987665 457899999999888877653 45788999999999999
Q ss_pred EEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 295 TGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.|+.|..+..||..+...... .+|..+|.|+.|+|+|..-++||.||+|++|-...++..
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999999999987654433 679999999999999999999999999999987655433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=266.89 Aligned_cols=307 Identities=21% Similarity=0.290 Sum_probs=238.9
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee-----eEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~-----~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
.|..+...|.+|+..|.++++.|.+. .|+|||-|.+|++||+..... ....+.....|++++||+.|..|+..+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 68888999999999999999999654 688999999999999875432 122234456799999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCe
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKT 205 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 205 (394)
.....+|+|-...+.....++. -+|-|+ ...+||...++|..|+|. .+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGD------------------------QYI~Dm------~nTKGHia~lt~g~whP~~k~~ 283 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGD------------------------QYIRDM------YNTKGHIAELTCGCWHPDNKEE 283 (641)
T ss_pred cCcceeEEccCCceeeeeeccc------------------------hhhhhh------hccCCceeeeeccccccCcccc
Confidence 9999999996544433332221 112222 223589999999999995 457
Q ss_pred EEEEeCCCcEEEEcCCCCc-eEEEEcCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccCCC
Q 016187 206 ICTGSDDATLRVWNPKSGE-NIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV---VSSLVSHTD 279 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~ 279 (394)
+++++.||++|+||+...+ .+..++... ...-.+++++|+++++.+++|..||+|.+|+..+... ...-.+|..
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 8999999999999987543 233333221 2233578899999999999999999999999865432 222356776
Q ss_pred --CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-ee---ccCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEE
Q 016187 280 --SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-ST---CDHEDGVTCLMWLGTSKYVVTGCV------DGKVRVWD 347 (394)
Q Consensus 280 --~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~---~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~iwd 347 (394)
.|+||.||++|++|++-+.|+++++||++..... .. ......-+.++|+|+.++|++|.. .|++++||
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 8999999999999999999999999999864221 11 112334567889999999999853 57899999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
..+.+.+..+.--...|..+.|+|.-+.|+.|+.||++++|-
T Consensus 444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999998887788899999999999999999999999873
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=273.18 Aligned_cols=296 Identities=21% Similarity=0.362 Sum_probs=253.2
Q ss_pred CCCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
....|......+..|.++|..+.|-+. ...|+|||.|..|++|++...+ .+.+|.|-.++|+++.|.+++.++++++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 345677788888999999999999984 5679999999999999987665 7788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+.+.. ...+..+..+ ...+
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~ 315 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDV 315 (459)
T ss_pred CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceee
Confidence 999999999999999999999999999999998877799999999999999998877776542 2334444444 5678
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
++|..|++||+||.++......+.. .+.|+++..++++..+++++.|.++.++|+++..+...+.+.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~--------- 382 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE--------- 382 (459)
T ss_pred eecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc---------
Confidence 9999999999999999888777664 247999999999999999999999999999988766554321
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC--ce
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD--AI 364 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~--~v 364 (394)
+ ..+.+. ++.+.|+|++.|+++||.||.|+||++.++++.+.+..... .|
T Consensus 383 ---g-----------------------~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI 434 (459)
T KOG0288|consen 383 ---G-----------------------FKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAI 434 (459)
T ss_pred ---c-----------------------cccccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcce
Confidence 1 011111 56778999999999999999999999999999998875443 59
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 365 QAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++|+|.|.+|++++.++.+++|.
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=261.86 Aligned_cols=282 Identities=25% Similarity=0.400 Sum_probs=249.3
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--------ecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
|.+.-+.|..|||||+||++||.||.|.+|+..+|+....+ .-+..+|.++.|+.+...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45566889999999999999999999999999999876543 3467799999999999999999999999999
Q ss_pred eCCccceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 177 NADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
.+.++.+++.|. +|...|+|+.|+.|+..+++++.|.++|+.-+++|++++.+++ |...|+...|.++|..+++++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---ccccccceEEcCCCCeEEEec
Confidence 999999999887 8999999999999999999999999999999999999988887 466788999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccC--CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCcceecc---CCCCEEEEEEeC
Q 016187 256 KDGSVHMVNITTGKVVSSLVSH--TDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLG 329 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h--~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~ 329 (394)
.||++++|+.++..++.++... .-+|+.+..-|. ...++.+...+++.|-+++....+.... ..+...+++.+|
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecC
Confidence 9999999999999999887643 456788777664 4578899999999999987654443321 123355667899
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|.++...+.|+.++.|.+.+|++.+.+.-|...|..++-+|+.+.+||-+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=254.49 Aligned_cols=277 Identities=27% Similarity=0.491 Sum_probs=237.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC---EEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~s~d~~i~iw~~~~~~ 182 (394)
|.+.|.++... ++.++||++||.+++||. .|+...++.+|.+++..++|.-.+. .+++++.|.++++|..+.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 88999999887 679999999999999996 5888899999999999888865443 59999999999999876543
Q ss_pred ----eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC-------------------------ceEEEEcCCC
Q 016187 183 ----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-------------------------ENIHVIRGHP 233 (394)
Q Consensus 183 ----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------------------------~~~~~~~~~~ 233 (394)
.++...||...|-+++..++|..+++|+.|.+|++|+..+. ..+..+.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--- 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--- 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec---
Confidence 23445699999999999999999999999999999993211 0112222
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP- 312 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 312 (394)
.|..+|..+.|++ ...+++++.|.+|+.||+.+++.+.++.. ...++|+..+|...+|++|+.|..+++||.++..-
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 3678899999988 77889999999999999999998888764 57899999999999999999999999999987532
Q ss_pred ---ceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe-EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 313 ---RSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 313 ---~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....+|...|.++.|+|... .|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|+ ++.+|+|||.|.+|+|
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 24568999999999999764 68899999999999999888 899999999999999997 5779999999999999
Q ss_pred Eecc
Q 016187 388 FEIA 391 (394)
Q Consensus 388 w~~~ 391 (394)
+.-.
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 9743
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=253.01 Aligned_cols=289 Identities=24% Similarity=0.371 Sum_probs=241.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------C------ceEEEEecCCCCEEEEEEcCCCC
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS------------G------NLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
..+..|+.++++.+|||||.++||||.|..|+|.|++. + .++.++..|.+.|+++.|||...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 35678999999999999999999999999999999751 1 24567788999999999999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
+|++|+.|++++++|.......+.++ ....+|.++.|+|.|.+|+.|...-++|+||+.+-++...-.....|...|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 99999999999999987543333222 2456899999999999999999999999999999888665555567889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc-
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD- 317 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 317 (394)
++.+++.+++.++|+.||.|++||--+++++.++. +|. ..|.+..|..+++|+++.+.|..+++|.+.+..+.....
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 99999999999999999999999999999998874 454 468889999999999999999999999998765443321
Q ss_pred -----CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 318 -----HEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 318 -----~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
...--+...|+....|++.-. ..+.+.-||.+++..+..+. ||++.+..+.-+|.++.+++||+|..+|+|.
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 011123345666666766543 35779999999998877664 8999999999999999999999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=254.62 Aligned_cols=285 Identities=26% Similarity=0.446 Sum_probs=239.9
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC---CEEEEEeCCC
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG---QLLASGGLDG 129 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~l~t~s~d~ 129 (394)
|+++.+-| -|.+-|.+|...+ ..+.||+.||++++|+. .|+.+.++.||.++|.+++|--.. ..|+++|.|.
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred CCCccccc-cchhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCc
Confidence 34444434 3889999988763 46889999999999996 678889999999999988885433 3599999999
Q ss_pred cEEEEeCCCCceE----EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-------------------------
Q 016187 130 LVQIWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------------------- 180 (394)
Q Consensus 130 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~------------------------- 180 (394)
++++|..+.++.. ....+|...|.+++-.+++..+++||.|.++.+|+...
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 9999998877543 23358999999999999999999999999999999321
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
..++..+.||..+|.++.|++ ...+++++.|.+|+.||+.+++....+.. ...++|+..+|...++++|+.|..|
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec----CcceeEeecccccceeeecCCCCce
Confidence 123456789999999999998 67899999999999999999988776653 4568999999999999999999999
Q ss_pred EEEECCCCc---EEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCC-cc-eeccCCCCEEEEEEeCCCCEE
Q 016187 261 HMVNITTGK---VVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQHSL-PR-STCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 261 ~i~d~~~~~---~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~~~l 334 (394)
++||.+++. +..++.+|...|.++.|+|... .|++++.|+++++||++... +. ...+|.+.|.++.|. ++.++
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 999998763 4577899999999999999876 48899999999999998764 33 345799999999997 46699
Q ss_pred EEEeCCCeEEEEEC
Q 016187 335 VTGCVDGKVRVWDS 348 (394)
Q Consensus 335 ~sg~~dg~i~iwd~ 348 (394)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=279.95 Aligned_cols=251 Identities=31% Similarity=0.554 Sum_probs=227.4
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc-CCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..+.+.+|...|+.++|+|+ +.++++|+.|+++++||+ ..+..+.++++|...|++++|+|+|+++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 34555799999999999995 568999999999999999 5558889999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcC--eEEEEECCCCCeEEEEe
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS 210 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~--v~~~~~~~~~~~l~s~~ 210 (394)
|+.+++....+.+|.++|+.++|++++++|++++.|+.|++||+.++. +...+.++... ++++.|+|+++++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999988 56777777655 89999999999999999
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC-CCCEEEEEECCC
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS 289 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~ 289 (394)
.|+++++||+..+..+..+.++......+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999988888876543224555566889999999999999999999999999999999 889999999999
Q ss_pred CCeEEEEe--CCCcEEEEeC
Q 016187 290 SPWAATGS--MDQKLIIWDL 307 (394)
Q Consensus 290 ~~~l~s~s--~dg~i~iwd~ 307 (394)
..++++++ .|+.+++|..
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCeeeecCcCCCceEEEecC
Confidence 99999998 7899999964
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=236.96 Aligned_cols=286 Identities=21% Similarity=0.381 Sum_probs=248.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~ 177 (394)
+.+++|...|.+|+|+.+|.+|++|+.|+++++|++...+... ...+|.+.|..++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999999999999999999998775543 34678889999999986 45899999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
.+++++..........+. +.|+|+|++++.+..|..|...|.++.+.+...+. ...+.-++|+.++.+++.-...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCC
Confidence 999998877765555554 68999999999999999999999988776554332 2346677888888888888888
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s 336 (394)
|+|.|....+.+++.++++|.....|+.|+|+|+++|+|+.|..+.+||+....+.. ...+.-+|..+.|+.++++||+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 999999999999999999999999999999999999999999999999998765443 4467788999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC---------CcEEEEeccC
Q 016187 337 GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD---------GTARVFEIAD 392 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------g~i~iw~~~~ 392 (394)
||.|..|-|=++.+|..+..+. +.++...|+|+|...+||-+++| |.+++|-+.+
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999999999998887 68889999999999999988764 6788887654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=236.04 Aligned_cols=284 Identities=18% Similarity=0.285 Sum_probs=237.2
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEE
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMW 176 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw 176 (394)
....++.-...|.++.|+++|.+|++++.|.++++||..+++.++++..+.-.+..++|....+.++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 33455556788999999999999999999999999999999999999888888999999888887777776 8999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
++.+.++++.+.||...|+.++.+|-+..++|++.|++||+||++..++...+.. .+-...+++|+|-++|++..
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----CCCcceeECCCCcEEEEecC
Confidence 9999999999999999999999999999999999999999999998887666542 22345789999999999998
Q ss_pred CCcEEEEECCCC--cEEEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCC---CEEEEEE
Q 016187 257 DGSVHMVNITTG--KVVSSLV---SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHED---GVTCLMW 327 (394)
Q Consensus 257 dg~i~i~d~~~~--~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~v~~~~~ 327 (394)
...|+++|++.- .+..++. .-....+.+.|||+|++++.+...+.+.+.|.-.+...... .+.. -.....|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 889999999863 2333333 33567889999999999999999999999997655433222 2211 1246678
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|+++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|...+++|+ +..+.+|=
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWL 301 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEe
Confidence 99999999999999999999999999999998 78999999999966666555 45577773
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=265.89 Aligned_cols=318 Identities=20% Similarity=0.322 Sum_probs=258.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....|..|.++|..|+|||+. -+|+|||.|..|+||++.+.+++.+|.||-+.|+.+.|++.-..++++|.|.+|+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 445588999999999999964 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----------------------------eeee
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YLNM 186 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----------------------------~~~~ 186 (394)
..++++++.+.+|...|.|.+|||...+++++|-|.+|++||+...+ ....
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 99999999999999999999999999999999999999999974211 1234
Q ss_pred ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
+.||...|+.++|+|.-..++||+.|+.|++|.+..-+.. .+.....|...|+++-|+|...++++.++|++|++||+.
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 6789999999999999999999999999999998654432 222233467889999999999999999999999999999
Q ss_pred CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 267 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
..+.++++....+.-..++-+|...++|.|- |+-+.+|-+....+ ..|+ .++.|+-. .|..|+.+
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErp---------a~~v----~~n~LfYv-kd~~i~~~ 345 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERP---------AYAV----NGNGLFYV-KDRFIRSY 345 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCc---------eEEE----cCCEEEEE-ccceEEee
Confidence 9999999987788899999999999888765 55566666553322 2222 22233322 38899999
Q ss_pred ECCCCeEE--EEeecc---cCceeEEEEccCCCEEEEEe--CCCcEEEEec
Q 016187 347 DSLSGDCV--RTFSGH---RDAIQAISVSAHQDFLVSVS--LDGTARVFEI 390 (394)
Q Consensus 347 d~~~~~~~--~~~~~h---~~~v~~l~~~~~~~~l~s~s--~dg~i~iw~~ 390 (394)
|.++.+-. ..++.- ..+..++.++|..+.+.-++ +.|.-.++.+
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 98885533 334432 36788999999877666553 3344444443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=252.90 Aligned_cols=286 Identities=24% Similarity=0.363 Sum_probs=249.0
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee--------cCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------QGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~--------~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
+--|.+..+.|..|+| ++++|+||+.||-+.+|++.+|++...+ .-|.++|.|+.||.|...||+|+.||.
T Consensus 208 IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred eecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 3346677889999999 5789999999999999999998866543 457899999999999999999999999
Q ss_pred EEEEeCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
|+||.+.+|.++..+. .|...|+++.|+.++..+++++.|.++++.-+.++++++.+.||.+.|+.+.|.++|..++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999988776 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccC---CCCEEEEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSH---TDSIECIG 285 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h---~~~i~~v~ 285 (394)
+.||+|++|+.++.+++.+++... ...+|.++..-| +...++++....++.+.++ .|+.++++... .+..-+..
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence 999999999999999988887543 345677777666 4568888999999999998 56778777542 23344567
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+|.|.|+.+.+.|+.+..|...+... +....|+..|..++.+|..+.|++-+.||.+++|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 899999999999999999999876543 44556888899999999999999999999999994
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=269.98 Aligned_cols=288 Identities=27% Similarity=0.525 Sum_probs=252.0
Q ss_pred eeeec-cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 58 ~~~~~-h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..+.+ |...+.+..|++ ..+.+++.|.++++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.++++||
T Consensus 201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 44454 566788888873 3688999999999999999988887 999999999999988788999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
..+|++.+.+.+|...+.++...+ .++++|+.|.+|++|++.++.++..+.+|..+|.++.++ +.++++|+.|++|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999999999999998887654 467889999999999999999999999999999999987 8899999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
++||+.++++++.+.+ |...|.++.+.+. ..+++|+.|++|++||+++. +++.++..|..-+..+.+ .+++|+
T Consensus 354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeE
Confidence 9999999999999887 5778999988766 89999999999999999999 999999999988866554 467899
Q ss_pred EEeCCCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
+++.|++|++||.....+..... |...|.++.+. ...+++++.+|++++||++++++.+.+-.+
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 99999999999998776655443 34677777765 468899999999999999999998876433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=248.45 Aligned_cols=282 Identities=21% Similarity=0.349 Sum_probs=253.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
..+.++...|....++||+.|..+.++|..+++.+.++++|...|+++.|+|+...+++++.|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 56888888888789999999999999999999999999999999999999999999999999999999999877777778
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
..|..+|+.+..+|.|.||++++.||+..+.|++++.++...... ...-.+++..|+|||.++.+|..|+.++|||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 899999999999999999999999999999999999987665431 1223589999999999999999999999999999
Q ss_pred CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 268 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
+..+..|.+|+++|.+++|+.+|-|||+++.|+.|++||+++......+ ....++.++.|.+.|.||+.++.|=.|++
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 9999999999999999999999999999999999999999876443333 23346999999999999999988877887
Q ss_pred EE--CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 346 WD--SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 346 wd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
++ ...+.++..+..|.+..+.+.|..+.++++++|.|...+++.+
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 76 3467788899999999999999999999999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=232.85 Aligned_cols=246 Identities=22% Similarity=0.391 Sum_probs=219.3
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
....+..++++|..+.|+.+|++.++++.|.++++|+...+.+++++.+|...|..++.+.|...|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+|+.+..+++| ...|+.+.|+.+...+++|+-|.++++||.++. ++++.+....+.|.++.+.. ..+++||.
T Consensus 89 ~TGkv~Rr~rgH---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 89 NTGKVDRRFRGH---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred ccCeeeeecccc---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 999999998874 567999999999999999999999999999864 57777777788999988874 46899999
Q ss_pred CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEE--EEccCCCEE
Q 016187 299 DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI--SVSAHQDFL 376 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~~l 376 (394)
||+++.||++...... -....+|+|+.|+++++.+++++.|+++++.|-.+|++++.++||.+.-..+ .++.....+
T Consensus 164 DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 9999999998764322 2235679999999999999999999999999999999999999998765444 455666789
Q ss_pred EEEeCCCcEEEEeccC
Q 016187 377 VSVSLDGTARVFEIAD 392 (394)
Q Consensus 377 ~s~s~dg~i~iw~~~~ 392 (394)
++||.||.|.+||+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVD 258 (307)
T ss_pred EeccCCceEEEEEecc
Confidence 9999999999999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=252.48 Aligned_cols=289 Identities=18% Similarity=0.317 Sum_probs=240.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
+..+.||.+.|+|+|=+|.....+|||+.||.|++||+.+.+++.++++|.+.|+.++++. ..+++++.|.+|+.|..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4556899999999999997657899999999999999999999999999999999999987 67889999999999987
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcE
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATL 215 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i 215 (394)
.. ....++.+. ..+..+.-+..+..+++|+. .|-|||.+...+++.+.-....+.++.|+|.. ..|++|+.|++|
T Consensus 137 ~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 455555432 34555666666777888765 58899999888888888788889999999954 567888899999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
.+||+++++.++.+.. .-.-+.++|+|++-.+++|++|..++.+|++.. .++....+|...|.+|+|||.|+-++
T Consensus 213 vLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred EEEecccCCccceeee----eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 9999999988766542 223457899998889999999999999999875 46677788999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
+||.|.+|+||.......+... ..-..|.|+.|+.|.+|+++||.|+.|++|.....+.+.
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999998765433221 122458999999999999999999999999876655444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=267.23 Aligned_cols=274 Identities=28% Similarity=0.549 Sum_probs=244.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
|...+.+..|. +.++++++.|.+|++|+..++..+.. +.+|.+.|..+++..-+.+|++|+.|.++++||..++.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 56899999999999999999998877 9999999999999987889999999999999999999999
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
..+.+|...+.++... ...+++|+.|.+|++|++.+++.+..+.+ |...|.++.++ +.++++|+.|++|++||
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc---ccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999988764 45788899999999999999999998886 67889999987 88999999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccceec-cCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. .+.... +|...+..+. ..+++|++++.|++
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGT 434 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEecccccc
Confidence 9999999999999999999988876 89999999999999999887 554443 4555554443 46789999999999
Q ss_pred EEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 343 VRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 343 i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|++||..++++++.+.+ |...|..+++. .+.+++++.||++++||+.+.
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 99999999999999998 67889888877 578899999999999999875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=227.46 Aligned_cols=285 Identities=19% Similarity=0.305 Sum_probs=239.9
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
..+.||..+++-|.++. ++.||.|++.|.++.||-..+|+.+.++.||++.|+|+..+.+.++|+||+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 34679999999999997 57899999999999999998999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEeCC-------ccceeeeecccCcCeEEEEECCCCCe
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----d~~i~iw~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
+|+.+.+++. ..+|..+.|++.+++++.+.. .+.|.+++++ ...+...+..+.+.++.+-|.|-+++
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999988874 467999999999998877654 3578899987 33445666778889999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEE
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~ 285 (394)
|++|..||.|..||.++|+.+... ...|...|+.+.++++..++++++.|.+-++||..+-++++++. -..|+++.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccccee
Confidence 999999999999999998754332 23467789999999999999999999999999999999998886 467999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCC---------------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHS---------------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
++|....++.|+.....-+=-...+ ......+|-.+|++++|+|+|+-.++|+.||.|++.-
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9998887776653322222111111 1122346889999999999999999999999999863
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=236.75 Aligned_cols=293 Identities=20% Similarity=0.325 Sum_probs=242.6
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------------------CeeeEeecCcccCEEEEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA 114 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------------------~~~~~~~~~h~~~V~~v~ 114 (394)
+.-.+..++.|+.++.+.+|+| ++.++||||.|..|+|.|++. ...+++|-.|.++|+++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3345677889999999999999 578999999999999999761 135677888999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---cc
Q 016187 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SG 189 (394)
Q Consensus 115 ~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~ 189 (394)
|+|....|++|+.|++|+++|.........+ -....+|.+++|||.|.+|+.|..-..+++||+++-++.... .+
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999998765433222 234568999999999999999999999999999987765432 46
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 269 (394)
|...|+++.+++.+++-++++.||.|++||-.+++++.++.... ....|.+..|..+++++++.+.|..+++|.+.+++
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 89999999999999999999999999999999999887775421 23468899999999999999999999999999999
Q ss_pred EEEEeccC-----CCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 270 VVSSLVSH-----TDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 270 ~~~~~~~h-----~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.+..+.+- ..--+...|+....|++.-.. .+.+.-||.++... ....+|++.+.++..+|.+.-+++++.|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 99887652 111233457777777665443 46788999887533 34568999999999999999999999999
Q ss_pred eEEEEE
Q 016187 342 KVRVWD 347 (394)
Q Consensus 342 ~i~iwd 347 (394)
++++|-
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=250.32 Aligned_cols=278 Identities=24% Similarity=0.384 Sum_probs=242.3
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.|.+|+|+|..++-+|..+ .-++.+|+..+...+..+.-.++.|+++.|-.||++||.|...|.|+|+|..+...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 358999999998887777654 3688899988877777777788999999999999999999999999999977766677
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCC
Q 016187 144 TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 221 (394)
.+..|+.++..+.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.|.|.+|+|- +..++||+.||+||+||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 8889999999999999765 6788899999999999998876689999999999999994 5689999999999999998
Q ss_pred CC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 222 SG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
.. ..+..+. |..+|..+.+-|.|..+++++. ..+++||+.+| +.+..+..|...|+|+.+..++..|++++.|
T Consensus 185 ~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 185 SLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred cCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 77 4444443 6778999999999999888764 57999999955 5555566699999999999999999999999
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.+++||+...+.........+|.+++.+|+++.++.|..+|.+.+=.
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 999999988877777788899999999999999999999999988774
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=258.78 Aligned_cols=338 Identities=22% Similarity=0.363 Sum_probs=290.3
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ 132 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~ 132 (394)
.+-..+|.++.+.|+++.-+|. -.++|-|-.+|+|.++++..++.+.+++--.+.|++++|..||+ .||+|+..|.+.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred CcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 3557778899999999999994 56899999999999999999999999985469999999999997 567788889999
Q ss_pred EEeCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc----ceeeeecccCcCeEEEEEC-CCCCeE
Q 016187 133 IWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFT-PDGKTI 206 (394)
Q Consensus 133 vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~-~~~~~l 206 (394)
+||++..+....+. .|.+.+....|.|....+++++.|+.+++|-.+++ ..++.-.||..+..|+.|. .+|..+
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 99999888776665 67789999999999999999999999998865532 4556667999999999997 688999
Q ss_pred EEEeCCCcEEEEcCCCC-------c--------e-------------EEEEc----------------------------
Q 016187 207 CTGSDDATLRVWNPKSG-------E--------N-------------IHVIR---------------------------- 230 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~-------~--------~-------------~~~~~---------------------------- 230 (394)
.+++.|++++.+++... + . +..+.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 99999999988875321 0 0 00000
Q ss_pred -----CC---CC----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe---ccCCCCEEEEEECCCCCeEEE
Q 016187 231 -----GH---PY----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL---VSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 231 -----~~---~~----~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~v~~~~~~~~l~s 295 (394)
.+ +. ....+++++.++.|++.+.|+..|+|.+|++++|....++ ..|..+|..++....++.+++
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 00 00 1135788999999999999999999999999999888888 589999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
++.+|-+++||..+........-...+.++.++.....++.+..|-.|+++|+.+.+.++.|.||.+.|+++.|||||++
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 99999999999988776666666677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeccC
Q 016187 376 LVSVSLDGTARVFEIAD 392 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~~ 392 (394)
|++++.|++||+||+.+
T Consensus 591 lisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPT 607 (910)
T ss_pred EEEeecCCcEEEEeccC
Confidence 99999999999999875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=254.56 Aligned_cols=339 Identities=23% Similarity=0.342 Sum_probs=272.1
Q ss_pred CceeeeeccCCcEEEEEEcCCC--CcEEEEecCCCeEEEEEcCCCe-------------------------ee------E
Q 016187 55 DSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD-------------------------WA------S 101 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~--~~~lasg~~d~~v~~w~~~~~~-------------------------~~------~ 101 (394)
.....+.||++.|.+|+|...+ ..+|||+|+|.+||||.+.-+. .. .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456678999999999997654 3689999999999999964221 01 1
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEE-----ecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GNLKCTL-----EGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
.+.||.+.|+++.|+|.+..|+++|.|.++.+|...+ |-.+..+ .+..++.....|+|+++.+++-+..|.++
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 2359999999999999999999999999999997653 4444333 34456789999999999999999999999
Q ss_pred EEeCCcc---ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC-CCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 175 MWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 175 iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
+|..... .....+.||...|+.++|.|.|++|++.+.|.+-|++-.- ..+..+.+...+.|...++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9984332 2344578999999999999999999999999999998765 23345667667788889999999887777
Q ss_pred EEEEeCCCcEEEEECCC-------------------------------------------CcE-----------------
Q 016187 251 ALSGSKDGSVHMVNITT-------------------------------------------GKV----------------- 270 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~-------------------------------------------~~~----------------- 270 (394)
+++|.....+|+|+... |..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 88888888888887421 000
Q ss_pred ----------------EEEeccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCcce-eccCCCCEEEEEEe
Q 016187 271 ----------------VSSLVSHTDSIECIGFSRSSPWAATGSMDQ-----KLIIWDLQHSLPRS-TCDHEDGVTCLMWL 328 (394)
Q Consensus 271 ----------------~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~-~~~~~~~v~~~~~~ 328 (394)
++++.+|...|.+++.+|++.++||++... .|++|+..+..... ...|.-.|+.++|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 011224667899999999999999998764 48999988764443 66899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDC----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|+++||++.|.|.++.+|....... ....+.|+.-|++..|+|++.+++|+|.|.+|++|...+.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999998643322 2236789999999999999999999999999999998764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=213.50 Aligned_cols=285 Identities=20% Similarity=0.366 Sum_probs=232.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------C-----ee----eEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------G-----DW----ASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------~-----~~----~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
..+..|.+++|+|.+ .+-|.|+..++.++--+.. + .. ...-+.|++.|+|.+|||+|++|+||+
T Consensus 30 ~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 456789999999964 5778899999999865421 1 01 112356899999999999999999999
Q ss_pred CCCcEEEEeCCCC--ce---EEEEecCCCCEEEEEEcCC----CCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEE
Q 016187 127 LDGLVQIWDPSSG--NL---KCTLEGPGGGVEWVSWHPR----GHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (394)
Q Consensus 127 ~d~~i~vwd~~~~--~~---~~~~~~~~~~v~~~~~~~~----~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~ 196 (394)
.|.+|++.-++.. +. ...+..|.+.|..++|-.+ +.+|++++ .|-.|++=|-.+++..+.+.||.+-|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 9999999755432 11 2346678899999999754 34666655 4677888888899999999999998876
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 272 (394)
+ ++-+|-++++|++|.+||+||++.+.++..+... ......+..+++.|.|+++++|..|.+..+||++.++.++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 5 4557889999999999999999998888776431 1223468899999999999999999999999999999999
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-----eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-----STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+..|+..|.|+.|+|..-|+++++.|.+|++=|++..... ....|.+.+..+.|+|..--+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 99999999999999999999999999999999998754222 2346888888999999998899999999999996
Q ss_pred C
Q 016187 348 S 348 (394)
Q Consensus 348 ~ 348 (394)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 4
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=265.86 Aligned_cols=287 Identities=27% Similarity=0.408 Sum_probs=240.8
Q ss_pred cCCcEEEEEEcCCCCcEEEEec--CCCeEEEEEcCC------------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 63 HSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~--~d~~v~~w~~~~------------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
+...|++|..||+ +..+|||| .|+.+++|+... .+.+.++..|.+.|.|+.|+|||++||+||.|
T Consensus 12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3457899999995 67899999 899999999532 23455677899999999999999999999999
Q ss_pred CcEEEEeCCC----------C--------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 129 GLVQIWDPSS----------G--------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 129 ~~i~vwd~~~----------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+.|.||.... | +....+.+|...|..++|+|++.+|++++.|++|.+|+..+.+.++.+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998662 1 245678899999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC---cccCeEEEEEcCCCCEEEEEe----CCCcEEEE
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGS----KDGSVHMV 263 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~g~----~dg~i~i~ 263 (394)
.+.|..+.|.|-|++||+-+.|++|+||++.+-...+.+..+-. ......-+.|+|||.+|++.. .-.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 99999999999999999999999999999877555555544321 233467789999999998853 34578899
Q ss_pred ECCCCcEEEEeccCCCCEEEEEECCC-----CC------------eEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEE
Q 016187 264 NITTGKVVSSLVSHTDSIECIGFSRS-----SP------------WAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTC 324 (394)
Q Consensus 264 d~~~~~~~~~~~~h~~~i~~v~~~~~-----~~------------~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~ 324 (394)
+-.+.+.-..+.+|..+++++.|+|. .. .+|+|+.|++|.||......+.... -....|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 88777878889999999999999983 11 5899999999999998654443322 23567999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
+.|+|+|..|+++|.||+|.++....
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcch
Confidence 99999999999999999999997653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=224.22 Aligned_cols=277 Identities=20% Similarity=0.311 Sum_probs=242.4
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIW 134 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vw 134 (394)
..+.+|...|.+|+|.- ++..||+|+.|+++.+|+++..++.. ..++|.+.|-.++|+|.. .+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 55778999999999997 57789999999999999998776554 457899999999999854 689999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|...++....+....+.+. +.|+|++.+++.+..|..|...|.++-+.....+ ....+.-+.|+.++.+++....-|+
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 9999999888776666554 7999999999999999999999998776655433 3445667788888888888788899
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|.|-....-+.+..++.| .....|+.|+|+|+++++|+.|..+.+||+...-+++.+..+.-+|..+.|+.++++||
T Consensus 171 v~ILsypsLkpv~si~AH---~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAH---PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccC---CcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 999988877777777764 56789999999999999999999999999999888899999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
++|.|..|-|-++.++.......++.+...++|+|...+||-++.|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999988888888889999999999999999988765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=243.11 Aligned_cols=276 Identities=24% Similarity=0.372 Sum_probs=233.8
Q ss_pred cccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 106 HKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
...+|.+++|||...+ +|+.+ .-.+.+|+..+.....++......+.++.|-.+|.+|++|...|.++++|..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 4468999999997654 44333 457999998887777767767788999999999999999999999999997777778
Q ss_pred eeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 016187 185 NMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHM 262 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i 262 (394)
+.+.+|..++..+.|+|. +..|++|+.|+.+++||+.+......+.+ |++.|+|.+++|. +.++++|+.||+|++
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~---htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG---HTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC---CcceeEeeccccCCCeEEEecCCCceEEE
Confidence 899999999999999995 56778899999999999988775334443 7889999999996 458999999999999
Q ss_pred EECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccc-eeccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 263 VNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPR-STCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 263 ~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
||+++. ..+.++ .|..+|..+.+-|.+..+|+++ ...+++||+.++ +.. ....|...|+|+.+..++..|++|+-
T Consensus 181 ~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 181 WDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 999987 444454 5999999999999999999887 567999999743 222 23449999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
|+.|++||+.+.+.+..++- .++|.+++.+|+++.++.|..+|.+.+=
T Consensus 259 D~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeee
Confidence 99999999988998888874 7799999999999999999999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=261.83 Aligned_cols=285 Identities=25% Similarity=0.372 Sum_probs=215.8
Q ss_pred Eeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC----------CCCEEEEEEcC---CCC--EE
Q 016187 101 SEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----------GGGVEWVSWHP---RGH--IV 164 (394)
Q Consensus 101 ~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~---~~~--~l 164 (394)
+.+. +|.+.|.++.||+||+|||+||.|+.|+||.+...+....-.+. .+.+..+.-.+ .++ ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 89999999999999999999999999999987653321100000 00010011111 001 11
Q ss_pred EEecCCCeEEEEeCC----ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 165 LAGSEDSTVWMWNAD----RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
-.+..... .+.+.. ..++++.+.||.+.|..+.|+.+ ++|++++.|++||||++...++++++. |.+.||
T Consensus 340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVT 413 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVT 413 (712)
T ss_pred ccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe----cCCeeE
Confidence 11222222 122211 23567889999999999999965 589999999999999999999999987 788899
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee----
Q 016187 241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST---- 315 (394)
Q Consensus 241 ~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---- 315 (394)
|++|+| |.+++++|+-||+++||++...+++.-... .+-|++++|.|+|++.+.|+.+|.+++|++........
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 999999 789999999999999999988876654443 38899999999999999999999999999875432221
Q ss_pred ------ccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCc--eeEEEEccCCCEEEEEeCCCcEE
Q 016187 316 ------CDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA--IQAISVSAHQDFLVSVSLDGTAR 386 (394)
Q Consensus 316 ------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~dg~i~ 386 (394)
..|. .|+.+.|.|.. ..|++.+.|.+|+|+|.++.+++..|+|+... =....|+.||++|+++++|..|+
T Consensus 493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1233 79999998754 35777789999999999999999999976533 24667999999999999999999
Q ss_pred EEeccCC
Q 016187 387 VFEIADF 393 (394)
Q Consensus 387 iw~~~~~ 393 (394)
+|+.+.+
T Consensus 572 iW~~~~~ 578 (712)
T KOG0283|consen 572 IWKNDSF 578 (712)
T ss_pred EEeCCCC
Confidence 9998654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=252.36 Aligned_cols=249 Identities=24% Similarity=0.423 Sum_probs=219.0
Q ss_pred ceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+..+++.+|...|+++.|.| .+++|++++.|+.|+||++.. +.+++++.+|..+|..+.|+++|..++|++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677889999999999999 789999999999999999876 8899999999999999999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
||+++|+++..+.. ...++|+.+.|++ +.+++|+.|+.|+.||++++++++.+..|-++|..+.|-+++..+++.
T Consensus 285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999888763 3468899999998 899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---EEEEeeccc--CceeEEEE
Q 016187 297 SMDQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD---CVRTFSGHR--DAIQAISV 369 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~--~~v~~l~~ 369 (394)
+.|++++||+.+...+..... ......|+..+|+++++++-+.|..|.++.+...- ..+.|+||. +--..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999987664443322 22345688899999999999999999999865432 234688885 33457899
Q ss_pred ccCCCEEEEEeCCCcEEEEeccC
Q 016187 370 SAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 370 ~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
||||.+|+||..||.+.+||..+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cCCCCeEEeecCCccEEEeechh
Confidence 99999999999999999999764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=254.66 Aligned_cols=319 Identities=20% Similarity=0.393 Sum_probs=260.1
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCe------eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--c
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG--N 140 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~------~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~--~ 140 (394)
++..++.++++|.|||.|+.+++|++.... .+..++.|.+.|..+....+|+.|+++|.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 555666677789999999999999975432 36678999999999999999999999999999999998877 3
Q ss_pred eEEEEecCCCCEEEEEE-cCCCCEEEEecCCCeEEEEeCCccce----------eeeec-ccCcCeEEEEECCCCCeEEE
Q 016187 141 LKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAAY----------LNMFS-GHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~d~~i~iw~~~~~~~----------~~~~~-~h~~~v~~~~~~~~~~~l~s 208 (394)
.+.++..|.+.|.++++ .++..++++|+-|+.|.+||++++.. ...+. |+..+|.+++-++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 56678889999999999 77788999999999999999986622 12223 88899999999999999999
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~ 288 (394)
|+..+.+++||.++++.+..+++ |...|.++.+++||+.+++++.||+|++||+...+++.++..|.+.|.++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 99999999999999999888886 678899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CeEEEE----
Q 016187 289 SSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS-------GDCVRT---- 356 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------~~~~~~---- 356 (394)
+-..+.+|+.||.|..=|++.. .....|....+|..+......+-+-+++.|+.|+-|...- +.+...
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~ 345 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDS 345 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccC
Confidence 9999999999999999998874 3334455556666666654444445677899999995431 111110
Q ss_pred --------------eecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 357 --------------FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 357 --------------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++| ..+|..-+.-.|.+.++|=...|.+.+||+-
T Consensus 346 ~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 346 NNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred CCccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 111 1123333334577899999999999999963
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=232.88 Aligned_cols=289 Identities=25% Similarity=0.436 Sum_probs=244.7
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe--
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-- 135 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd-- 135 (394)
..|.||.+.|+.++.... ..++.|++.|.+.+||.++++.++.++.||.+.|++++|++.+.+++|+|.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 346799999999998764 44899999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCC--------C--------------------------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 136 ----PSS--------G--------------------------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 136 ----~~~--------~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+.. + -.++.+.+|.+.|.+..|...++.+++++.|.+..+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0 02345678889999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
++++..+..+.||....+.+.-+|..+++++.+.|.+.|+||++. .++.+...+.|.+.++++.|.-+. .+++|+.|
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDD 377 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDD 377 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeecCCC
Confidence 999999999999999999999999999999999999999999983 333333334578889999998765 56899999
Q ss_pred CcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----cc-eeccCCCCEEEEEEeCCC
Q 016187 258 GSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL----PR-STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 258 g~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~-~~~~~~~~v~~~~~~~~~ 331 (394)
.+|++||+++.+ ++.++. -..+++.++++..++++|.--....|+|||+.... ++ ...+|...|+|++|..+.
T Consensus 378 rTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999999875 455554 46789999999999999998888999999997542 22 234688889999998553
Q ss_pred --CEEEEEeCCCeEEEEECCCC
Q 016187 332 --KYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 332 --~~l~sg~~dg~i~iwd~~~~ 351 (394)
.-|++++.|..+.-|++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccccccceeeeeEeccc
Confidence 46889999999999987654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=249.36 Aligned_cols=275 Identities=21% Similarity=0.340 Sum_probs=239.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-c
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-H 190 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-h 190 (394)
-+.|+ ..+.||+|. ...|.+|+..+++.......+...|+++.|+++|.+|++|..+|.+.|||..+.+.++.+.+ |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 35677 345677665 45799999999987665555578999999999999999999999999999999988999888 9
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
...|.+++|. +..+.+|+.|+.|..+|++..+..... ...|...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 9999999998 678999999999999999987765441 234677899999999999999999999999999988888
Q ss_pred EEEeccCCCCEEEEEECCC-CCeEEEE--eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE--eCCCeEEE
Q 016187 271 VSSLVSHTDSIECIGFSRS-SPWAATG--SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG--CVDGKVRV 345 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~-~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg--~~dg~i~i 345 (394)
+..+..|...|.+++|+|- ..+||+| +.|+.|++||..+........-...|..+.|++..+.|+++ -.+..|.|
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 9999999999999999995 4578876 56999999999877666666667789999999998777764 45778999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+..+.+.+..+.||...|..++++||+..+++|+.|.++++|++-+
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999999999999999999999999999998743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=248.55 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=211.8
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-------------EEEecCCCCEEEEEEcC-CCCEEEEecCCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-------------CTLEGPGGGVEWVSWHP-RGHIVLAGSEDS 171 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~ 171 (394)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666777778777778887777778876544322 13668999999999999 788999999999
Q ss_pred eEEEEeCCcc-------ceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 172 TVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 172 ~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
+|++|++... ..+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+.. |...|.+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~---h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---HSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC---CCCceEEEE
Confidence 9999998754 2456788999999999999975 6899999999999999999887777764 566799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCC-EEEEEECCCCCeEEEEe----CCCcEEEEeCCCCC-cceec-
Q 016187 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSRSSPWAATGS----MDQKLIIWDLQHSL-PRSTC- 316 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~v~~~~~~~~l~s~s----~dg~i~iwd~~~~~-~~~~~- 316 (394)
|+|++.++++++.|++|++||+++++.+.++..|... +..+.|.+++..+++++ .|+.|++||++... +....
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 9999999999999999999999999999999888765 44677888877777654 47899999997643 22221
Q ss_pred -cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-ccCceeEEEEccC
Q 016187 317 -DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAH 372 (394)
Q Consensus 317 -~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~ 372 (394)
.....+....|++++++|++|+ .||.|++||+.+++++..+.. +..++..++|.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2334566677899999999887 499999999999988776543 4567888989884
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=234.58 Aligned_cols=280 Identities=19% Similarity=0.356 Sum_probs=241.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
..+.++...|. ...+.|||.|.++.++|...++.+..++||...|+.+.|+|+...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 56788888876 56789999999999999999999999999999999999999999999999999999999887776667
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc--CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
...|.++|+.+..+|.|.||++++.|+.....|.+++..+...... .-.+++++|+|||..|.+|..||.|++||++.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 7889999999999999999999999999999999998877655432 34589999999999999999999999999998
Q ss_pred CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCc
Q 016187 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
+..+..+.+ |..+|..++|+.+|.++++++.|+.|++||++..+.+.++.... ..+.++.|.+.|.+|+.++.|=+
T Consensus 379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 887666654 78899999999999999999999999999999988777775433 36999999999999999988767
Q ss_pred EEEEeCCCC---CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 302 LIIWDLQHS---LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 302 i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
|.+++-.+. .......|.+..+++.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 766663322 22223456667889999999999999999999888753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=246.90 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=204.9
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-------------EeecCcccCEEEEEEcC-CCCEEEEEeCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDG 129 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-------------~~~~~h~~~V~~v~~s~-~g~~l~t~s~d~ 129 (394)
-..|.....++++.. +++++.+..+..|+...+..+ ..+.||.+.|++++|+| ++++|++|+.|+
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 345555566664343 456777888888875433221 24789999999999999 889999999999
Q ss_pred cEEEEeCCCCc-------eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC
Q 016187 130 LVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 130 ~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~ 201 (394)
+|++||+.++. .+..+.+|...|.+++|+|.+ ++|++++.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999987652 456788999999999999985 6999999999999999999988888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-EEEEecc
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS----KDGSVHMVNITTGK-VVSSLVS 276 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~~-~~~~~~~ 276 (394)
+|.+|++++.|++|++||+++++.+..+.+|.. .....+.|.+++..+++++ .|+.|++||+++.. ++.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 999999999999999999999988877765421 1234567788877777654 47899999998754 4443333
Q ss_pred C-CCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCC
Q 016187 277 H-TDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGT 330 (394)
Q Consensus 277 h-~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~ 330 (394)
+ ...+....|++++.+|++++ .|+.|++||+........ ..+..++..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 3 34566677999999998887 599999999987644332 233445667777764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=221.25 Aligned_cols=279 Identities=24% Similarity=0.363 Sum_probs=226.6
Q ss_pred EEEEEEcCCCCcE--EEEe-----cCCCeEEEEEcCCCeeeEeec--CcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 016187 67 VYSVACSPTDATL--VATG-----GGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDP 136 (394)
Q Consensus 67 v~~~~~~p~~~~~--lasg-----~~d~~v~~w~~~~~~~~~~~~--~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~ 136 (394)
-+++.|+|--... +|++ .+.|+++|-++...+-+..+. .-.+.+..++|++.. +.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788999953333 3443 257888998886444343332 246889999999875 57889999999999996
Q ss_pred CC-CceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCC
Q 016187 137 SS-GNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDA 213 (394)
Q Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 213 (394)
.. ...+..++.|...|.++.|++.. ..++++|-|++|++|+......++++.||...|...+|+| ..+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 34677788999999999999864 4678889999999999999999999999999999999999 678999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCC-
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSS- 290 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~- 290 (394)
++++||++.......+.. |...+.|+.|+. +..++++|+.|+.|+.||+++.+ ++..+.+|.-.|..+.|||..
T Consensus 171 ~l~lwdvr~~gk~~~i~a---h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEA---HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred eEEEEEecCCCceeEEEe---ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 999999986544444544 556799999987 56788999999999999998764 678889999999999999974
Q ss_pred CeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEC
Q 016187 291 PWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLG-TSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~ 348 (394)
..||+++.|-+++|||.... .......|.+-+..+.|++ +..++|+.+.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 58999999999999998643 2333345777788899986 4678999999999999973
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=221.00 Aligned_cols=277 Identities=20% Similarity=0.292 Sum_probs=225.3
Q ss_pred EEEEEcCC-CCEEEEEe-------CCCcEEEEeCCCCceEEEE--ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCC
Q 016187 111 SSLAFSMD-GQLLASGG-------LDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 111 ~~v~~s~~-g~~l~t~s-------~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~ 179 (394)
+++.|||- .++||.+. ..|++.|.++..++-+..+ -.-.+.+..++|++. .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67899983 23443332 4688999998644333222 234567899999996 4688999999999999964
Q ss_pred -ccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeC
Q 016187 180 -RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSK 256 (394)
Q Consensus 180 -~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~ 256 (394)
...++..++.|...|.++.|++ .++.+++++.|++|++|+...++.+.++.+ |..-|....|+| .+.++++++.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---HNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---CccEEEEEecCCCCCCeEEEccC
Confidence 3457888999999999999998 566788889999999999999999988887 566789999999 5789999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCC-C
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTS-K 332 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~-~ 332 (394)
|+++++||++..-....+..|...|.|+.|+.- ...|+||+.|+.|+.||++..... ...+|.-+|..+.|+|.. .
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 999999999864333348899999999999975 457899999999999999864322 235789999999999974 6
Q ss_pred EEEEEeCCCeEEEEECCCC-eEEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEEec
Q 016187 333 YVVTGCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw~~ 390 (394)
.|++++.|-+++|||...+ .++.+..-|++.|-.+.|++ ++.++|+++.|+.++||+-
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999998744 45667788999999999986 5679999999999999983
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=237.03 Aligned_cols=283 Identities=19% Similarity=0.310 Sum_probs=232.9
Q ss_pred eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 98 DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
.++..|.||.+.|.|++=+|.. ..+|+|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++.|.+|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 4566789999999999999987 7899999999999999999999999999999999999987 568899999999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEe
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~ 255 (394)
..+. +.++.+.+. +.+..+.-+..+..++||+. .|.|||.....++..+. .....|.++.++|-.. +|++++
T Consensus 135 k~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 135 KIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS---WGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eccC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceee---cCCCceeEEecCCCcchheeeec
Confidence 8775 345555432 34556666666778888875 58999987766665554 2356789999999654 666777
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCCCE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 333 (394)
.|++|.++|++.+++++++. -....+.++|+|..-.+++++.|..+..||++... .....+|..+|..++|+|.|+-
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred cCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 99999999999998887654 24456789999988889999999999999997542 2334678889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 334 VVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 334 l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+++||.|.+|+||.++.+.....+. .--..|.+|.|+.|.+|++|||+|+.||+|.-
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999998776554432 22356999999999999999999999999974
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=225.86 Aligned_cols=291 Identities=22% Similarity=0.402 Sum_probs=248.9
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+.+.+.||++.|+.++.......+.++|.|.+.+||.+++|+++.++.+|.+.|++++|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34567899999999999887777999999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCc----------------------------------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 178 ------ADR----------------------------------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 178 ------~~~----------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+.. ..++..+.+|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 110 0024457899999999999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
||+++++.++.+.+| ...++.++-+|..+++++++.|.+.++||.+.. ..+..|++|++.|+++.|..+. .+++|
T Consensus 299 wDVEtge~v~~LtGH---d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 299 WDVETGEVVNILTGH---DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeccCceeccccCc---chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999988874 567888899999999999999999999999843 3567789999999999998765 47899
Q ss_pred eCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----ecccCceeEEEEc
Q 016187 297 SMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-----SGHRDAIQAISVS 370 (394)
Q Consensus 297 s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~ 370 (394)
+.|.+|++||++.. .+...+.-..+++.++.+..++.++.--.+..|++||+. |..+.++ .||...|.+.+|.
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeecc
Confidence 99999999999864 334445556778888888888888888888999999985 4333333 4899999999998
Q ss_pred cCC--CEEEEEeCCCcEEEEeccCC
Q 016187 371 AHQ--DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 371 ~~~--~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+. .-|++||-|+.+.-|++...
T Consensus 454 eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 454 EEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCcccccccccccceeeeeEeccc
Confidence 654 45889999999999998754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=253.95 Aligned_cols=284 Identities=23% Similarity=0.349 Sum_probs=236.0
Q ss_pred cccCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGG--LDGLVQIWDPSS------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s--~d~~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
+...|.++..+|+|..+|||+ .|+.++||+... .+.++++..|.+.|+|+.|+|+|.+||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 999999997532 345677888999999999999999999999999
Q ss_pred eEEEEeCCc------------------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 172 TVWMWNADR------------------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 172 ~i~iw~~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
.|.+|.... -+....+.+|...|..+.|+|++.+|++++.|++|.+|+.++.+.+..+++|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H- 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH- 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc-
Confidence 999998662 1245678899999999999999999999999999999999999888888875
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC------CCCEEEEEECCCCCeEEEEe----CCCcEE
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH------TDSIECIGFSRSSPWAATGS----MDQKLI 303 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~v~~~~~~~~l~s~s----~dg~i~ 303 (394)
...|..+.|.|-|+++++-+.|++|++|++.+-.+.+.+..+ ......+.|||+|.+|++.. .-.++.
T Consensus 171 --~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 --QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred --cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 455777899999999999999999999998776666665543 23467899999999998863 234577
Q ss_pred EEeCCCCC-cceeccCCCCEEEEEEeCC-----CC------------EEEEEeCCCeEEEEECCCCeEEEEee-cccCce
Q 016187 304 IWDLQHSL-PRSTCDHEDGVTCLMWLGT-----SK------------YVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAI 364 (394)
Q Consensus 304 iwd~~~~~-~~~~~~~~~~v~~~~~~~~-----~~------------~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v 364 (394)
|.+-.+.. .....+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++.... --...|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 76654443 3456799999999999972 11 68899999999999987766654432 345679
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 365 QAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.++.|+|||-.|+.+|.||+|.++.++.
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999999999999999998764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=234.17 Aligned_cols=251 Identities=24% Similarity=0.365 Sum_probs=209.5
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
-.+++.||..+|..|.|+|++ ++|.++|.|..+++||+.+++....+. +|...+.+++|.|||..+++|+.|+++..|
T Consensus 261 l~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 367788999999999999965 566778999999999999999887664 457899999999999999999999999999
Q ss_pred eCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 135 DPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 135 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+. |+.+...++.. ..|.+++..++|+++++...|..|++++.+......... ...+|++..++.+++++++--.+.
T Consensus 340 dlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 340 DLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred cCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccC
Confidence 986 44444444432 458899999999999999999999999988765444333 346899999999999999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC-e
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP-W 292 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~-~ 292 (394)
.+++||++....+..+.+|.....-|.++--..+..++++|++|+.|+||+..+++++..+.+|...|+||+|+|..+ .
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 999999997776666666543333344433334668999999999999999999999999999999999999999765 6
Q ss_pred EEEEeCCCcEEEEeCCC
Q 016187 293 AATGSMDQKLIIWDLQH 309 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~ 309 (394)
+|+++.||+|+||.+..
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 89999999999998754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=240.51 Aligned_cols=331 Identities=20% Similarity=0.314 Sum_probs=279.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
...|.-..+.|++++|..++..++|+|+..|.+.+||++..+.+..++ .|.+.|....|-|....|+|++.|..+++|-
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 334443348999999999888899999999999999999988888776 7999999999999999999999999999986
Q ss_pred CCCC----ceEEEEecCCCCEEEEEEc-CCCCEEEEecCCCeEEEEeCCcc-------c--------e------------
Q 016187 136 PSSG----NLKCTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRA-------A--------Y------------ 183 (394)
Q Consensus 136 ~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d~~i~iw~~~~~-------~--------~------------ 183 (394)
..++ +.+..-.+|..+..+++|. .++..+++++.|++++.+++... + .
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 5544 3455567899999999998 67889999999998887764210 0 0
Q ss_pred -eee-------------------------------------------ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 184 -LNM-------------------------------------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 184 -~~~-------------------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
+.. ++.....+++++.++-|++.+.|+..|+|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000 001124578889999999999999999999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.+|-....+...+.|..+|+.++...-++.+++++.+|.+++||..+..++.++. -..++.++..+.....+|.+..|
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCc
Confidence 99998777776667789999999999999999999999999999999888777665 35678888899888999999999
Q ss_pred CcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEE
Q 016187 300 QKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 300 g~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 378 (394)
-.|+++|+.+. ..+...+|...|+.++|+|+|++|++++.|++|++||+.++.++..+.- ..+.+.+.|+|+|.+||+
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEE
Confidence 99999998765 4456678999999999999999999999999999999999999987764 668899999999999999
Q ss_pred EeCC-CcEEEEe
Q 016187 379 VSLD-GTARVFE 389 (394)
Q Consensus 379 ~s~d-g~i~iw~ 389 (394)
+..| .-|.+|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 9988 6799995
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=245.66 Aligned_cols=249 Identities=13% Similarity=0.176 Sum_probs=196.9
Q ss_pred EecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------eEEEEecCCCCE
Q 016187 82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGV 152 (394)
Q Consensus 82 sg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~--------~~~~~~~~~~~v 152 (394)
+||.++.+++|+......+..+.+|.++|.+++|+|+ +.+||||+.|++|+|||+.++. .+..+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4778899999998877788899999999999999997 7899999999999999997642 234678899999
Q ss_pred EEEEEcCCCCE-EEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 153 EWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 153 ~~~~~~~~~~~-l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
.+++|+|++.. +++++.|++|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999875 5789999999999999887766664 567899999999999999999999999999999988887776
Q ss_pred CCCcc--cCeEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 232 HPYHT--EGLTCLTISADSTLALSGSKDG----SVHMVNITT-GKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 232 ~~~~~--~~i~~~~~~~~~~~l~~g~~dg----~i~i~d~~~-~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
|.... ..+....+++++.++++++.|+ .|++||+++ ++++..+. .+...+......+++.++++|+.|++|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 53211 1122334568989999887764 799999985 55555432 333444444456678899999999999
Q ss_pred EEEeCCCCCcce--eccCCCCEEEEEEeCCC
Q 016187 303 IIWDLQHSLPRS--TCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 303 ~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~ 331 (394)
++|++....... ...+..+..+++|.|..
T Consensus 288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCcEEeecccccCCCccceEEcccc
Confidence 999997653222 22355667788888864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=225.16 Aligned_cols=328 Identities=20% Similarity=0.325 Sum_probs=263.6
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCC--------eEEEEEcCCCeeeEeecCcccCEEEEEEcC--CCCEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDD--------KGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLAS 124 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~--------~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~l~t 124 (394)
...+.+.||++.|.|++.|| +.-++|+|-.-+ .+++||..+-..+..+..-...|.|++||+ .|.+|+.
T Consensus 95 ~~Qr~y~GH~ddikc~~vHP-dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHP-DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hhcccccCCCCceEEEeecC-CceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE
Confidence 35566789999999999999 466788875555 389999877777777777778899999997 3556554
Q ss_pred E--eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee---eeccc-CcCeEEEE
Q 016187 125 G--GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN---MFSGH-GSSVTCGD 198 (394)
Q Consensus 125 ~--s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~---~~~~h-~~~v~~~~ 198 (394)
. +.+..+.|||...+......+...+.|..+.|+|.+..++.....+.+..|+.+.+...+ .+.++ ...|.|+.
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred ecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 4 455678899998888777777778889999999988767666677999999988765543 23333 36789999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--------- 269 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--------- 269 (394)
|.++|. +++|.++|.|.||+..+.+..+... .|..+|.+++.-.+|+++- |+.|..|..||-.-.+
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVH---AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEee---ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 999886 6799999999999987666544433 5889999999999998765 9999999999831100
Q ss_pred ----------------------EE---------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccC
Q 016187 270 ----------------------VV---------SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH 318 (394)
Q Consensus 270 ----------------------~~---------~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 318 (394)
++ ...++|.+....++.+|+...+++++.|+.++||+ ..++.....-
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 00 01234777788899999999999999999999999 3444555556
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+++.|+.|+|.+ .|+.|+..|...+.|..+...+...+. +.+++.|+|+|+|.+||.|+.|+.|.||.+..
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 7789999999999 999999999999999999777765555 88999999999999999999999999999874
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=210.54 Aligned_cols=287 Identities=16% Similarity=0.258 Sum_probs=237.0
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC--CCcEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQI 133 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~--d~~i~v 133 (394)
+.+.|..-.+.|+++.|+++ +.++++++.|.+++|||..+++...++..++-.|..++|......++-++. |.+||.
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 34455556778999999996 556777899999999999999999999999999999999887777776766 899999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
.++.+.+.+..+.+|...|..++.+|-+..+++++.|++|++||++..++...+..-..+ .++|.|.|-.+|++....
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999999999999977776655433333 468999999999999888
Q ss_pred cEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE---EEEEECC
Q 016187 214 TLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI---ECIGFSR 288 (394)
Q Consensus 214 ~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i---~~v~~~~ 288 (394)
.|++||++.-. ....+..........+.+.|+|+|++++.+...+.+++.|.-+|..+.++..+...- -...|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 99999998642 222332222234568899999999999999999999999999999988887765432 4667999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCccee-cc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPRST-CD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+++++++|+.||+|.+|++.+...... .+ +...+.|+.|+|...+++++ +..+-+|=
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWL 301 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEe
Confidence 999999999999999999987654433 23 56788999999987777765 56688884
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=216.96 Aligned_cols=283 Identities=22% Similarity=0.268 Sum_probs=218.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEE--ecCCCCEEEEEEcCCCCE-EEEecCCCeEEE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTL--EGPGGGVEWVSWHPRGHI-VLAGSEDSTVWM 175 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~-l~~~s~d~~i~i 175 (394)
..|+||.+.|++|+||.||++|||++.|++|++|++...... ..+ .-..+..+.+.|.|+-+. ++++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 458999999999999999999999999999999998764321 011 112235678999999774 455556678999
Q ss_pred EeCCcc---ce---------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 176 WNADRA---AY---------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 176 w~~~~~---~~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
|.+... .. ...-..|...+..+-...++++|++++.|..|.+|+++ |+.+..+...+ ..-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---SSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc---cccccee
Confidence 976432 11 11123466677777777889999999999999999998 88877765432 2344568
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC---CC-----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----
Q 016187 244 ISADSTLALSGSKDGSVHMVNIT---TG-----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL---- 311 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~---~~-----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---- 311 (394)
++|+|+++++++----+++|.+- .| +.+.++.+|...|..++|+++...+++.|.||+++|||+.-..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999863 22 2356788999999999999999999999999999999974210
Q ss_pred --------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCC
Q 016187 312 --------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 312 --------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+...+........+..+|.++.|+.. ....++++..++|+....++ .|...|.+++|+++|++++|+| |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 11122223344578899999887764 46689999999998887775 7999999999999999999998 6
Q ss_pred CcEEEEe
Q 016187 383 GTARVFE 389 (394)
Q Consensus 383 g~i~iw~ 389 (394)
+.++++.
T Consensus 394 r~vrv~~ 400 (420)
T KOG2096|consen 394 RYVRVIR 400 (420)
T ss_pred eeeeeec
Confidence 7777765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=241.81 Aligned_cols=244 Identities=17% Similarity=0.306 Sum_probs=195.8
Q ss_pred EeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccc--------eeeeecccCcCeE
Q 016187 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA--------YLNMFSGHGSSVT 195 (394)
Q Consensus 125 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~--------~~~~~~~h~~~v~ 195 (394)
|+.++.|++|+......+..+.+|.++|.+++|+|. +.+|++|+.|++|++|++.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998877778889999999999999997 7899999999999999987532 2346788999999
Q ss_pred EEEECCCCCe-EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 196 CGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 196 ~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
+++|+|++.. |++++.|++|++||+++++.+..+. +...+.+++|+|+|.++++++.|+.|++||+++++.+.++
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999998876 5789999999999999988766554 2356999999999999999999999999999999999999
Q ss_pred ccCCCCEEE-----EEECCCCCeEEEEeCCC----cEEEEeCCC-CCcceeccCCCC---EEEEEEeCCCCEEEEEeCCC
Q 016187 275 VSHTDSIEC-----IGFSRSSPWAATGSMDQ----KLIIWDLQH-SLPRSTCDHEDG---VTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 275 ~~h~~~i~~-----v~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~---v~~~~~~~~~~~l~sg~~dg 341 (394)
.+|.+.+.+ ..|++++.++++++.|+ +|+|||++. ..+.....+... +......+++.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 999876543 34568888999888774 799999985 333333333322 22333345588899999999
Q ss_pred eEEEEECCCCeEE--EEeecccCceeEEEEccCC
Q 016187 342 KVRVWDSLSGDCV--RTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 342 ~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~ 373 (394)
.|++|++..+.+. ..+. +..++.+++|.|+.
T Consensus 286 tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 9999999877532 2233 56788999999964
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=247.01 Aligned_cols=244 Identities=19% Similarity=0.324 Sum_probs=201.2
Q ss_pred ee-ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------------------------------C---------
Q 016187 60 FS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G--------- 97 (394)
Q Consensus 60 ~~-~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------------------------------~--------- 97 (394)
+. +|.+.|+++.|+| ++++|||||.|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44 8999999999999 578999999999999999754 0
Q ss_pred -------------------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 98 -------------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 98 -------------------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
+++..+.||.+.|..+.||.++ +|+++|.|.+||+|++...++++.+. |..-|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0223457999999999999864 88899999999999999999998887 78899999999
Q ss_pred C-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-----CC
Q 016187 159 P-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----GH 232 (394)
Q Consensus 159 ~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~ 232 (394)
| |.+++++|+-|+.++||++...+...-... ..-|+++.|.|+|+..+.|+.+|.+++|++...+...... ..
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9 567999999999999999988775544333 3789999999999999999999999999998765433221 11
Q ss_pred CCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 233 PYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
......|+.+.+.|.. ..+++.+.|..|+|+|++...++..++++.. .-....|+.+|+++++++.|..|.+|++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 1112379999998754 3588889999999999988888888876432 2235678999999999999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-29 Score=225.16 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=222.7
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 156 (394)
.+++|++.|+.+++||+.+++.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 4788999999999999999988888876644 6789999999976 567788999999999988877665443 356789
Q ss_pred EcCCCCEEEE-ecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC-cEEEEcCCCCceEEEEcCCCC
Q 016187 157 WHPRGHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 157 ~~~~~~~l~~-~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~ 234 (394)
|+|+++.+++ ++.++.+++||+.+.+.+..+.. ...+.+++|+|+|+++++++.++ .+.+||..+++....+..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--- 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--- 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---
Confidence 9999987655 45689999999988776666543 23467899999999999988775 467789987766544321
Q ss_pred cccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeccCC-----C--CEEEEEECCCCCeEEE-EeCCCcEEEE
Q 016187 235 HTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHT-----D--SIECIGFSRSSPWAAT-GSMDQKLIIW 305 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~-----~--~i~~v~~~~~~~~l~s-~s~dg~i~iw 305 (394)
.....++.++|++++++++ ..++.|++||+.+++.+..+..+. . ....++|+|++++++. .+.++++.+|
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 2245678999999988654 469999999999998776654321 1 2346889999998544 4556789999
Q ss_pred eCCCCCcceeccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 306 DLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 306 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
|+.+........+...+.+++|+|++++|+++ ..+|.|++||+.+++++.++... ...+.++|+|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99876554444455678899999999999886 46899999999999999999865 4458898875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=225.94 Aligned_cols=295 Identities=23% Similarity=0.372 Sum_probs=237.7
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee----Ee------------e--cCcccCEEEEEEcCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE------------I--QGHKDSVSSLAFSMD 118 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~----~~------------~--~~h~~~V~~v~~s~~ 118 (394)
......|.-+|.+++++|++. +..+++.|++|.-|++.+++-. .. . ++|.+.|.+++.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 456678999999999999755 5668999999999998776522 11 1 278899999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
|+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-...+.+++++.|+++++|+++...++.++.||.+.|..+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999998
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-C
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-H 277 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h 277 (394)
...-++.+-.|+.|+++++|++....++ .+.+ +...+-|+++-. ...+++|+.+|.|.+|++.+.+++.+... |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesql-ifrg---~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQL-IFRG---GEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhcccceEEeccccceeEEEecccccee-eeeC---CCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccc
Confidence 8878888888889999999999654443 3333 355688888865 45679999999999999999888876532 2
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG----DC 353 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~ 353 (394)
. ..|.. ....++..|++++..|...++++|+.+|.|++|-+..+ .+
T Consensus 369 g-------v~~~~-----------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 369 G-------VIPEL-----------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred c-------ccCCc-----------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 1 01110 01122356889999999999999999999999987766 44
Q ss_pred EEEeecccCceeEEEEccCCCE-EEEEeCCCcEEEE
Q 016187 354 VRTFSGHRDAIQAISVSAHQDF-LVSVSLDGTARVF 388 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iw 388 (394)
+..+. -.+.|++|+|+++|+. ++..+....+--|
T Consensus 419 l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 419 LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 55555 5678999999999995 4455555544434
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=215.86 Aligned_cols=246 Identities=20% Similarity=0.357 Sum_probs=206.5
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC--EEEEEeCCCcEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQ 132 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~l~t~s~d~~i~ 132 (394)
.+...|..|.+++++||.+ +.++||||.|.+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3456678999999999985 56899999999999999999888889999999999999998775 899999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
+|+....+.+.+++.|.+.|+.++.||.+++.++.+.|+.+++||+-+++.-..+.- ....+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999987764433322 1223448999999999888775
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE--CCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF--SRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~--~~~~ 290 (394)
+ |-+|.+.+......+.. ...+.|+.|- ++..+++|..|+.|.+||..+..++..+.+|...|.++.+ .|.+
T Consensus 190 ~-i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 190 K-IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred E-EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 4 78898766543333221 1335555554 5678899999999999999999999999999999999984 4678
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 016187 291 PWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+|+|+|.||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=234.24 Aligned_cols=274 Identities=23% Similarity=0.385 Sum_probs=232.6
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG- 147 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~- 147 (394)
-+.|+. .+.||.|. ...+++|+..+++......-+.+.|+++.|+++|++|++|..+|.|.|||..+.+....+.+
T Consensus 182 lldWss--~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred Hhhccc--CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346774 34666553 46899999999887666665689999999999999999999999999999999988888888
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
|...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|-.++|+++++++|+|+.|..+.|||......+
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 88999999999 67899999999999999987655444 8899999999999999999999999999999999776666
Q ss_pred EEEcCCCCcccCeEEEEEcC-CCCEEEEE--eCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCc
Q 016187 227 HVIRGHPYHTEGLTCLTISA-DSTLALSG--SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG--SMDQK 301 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~--s~dg~ 301 (394)
..+.. |...|..++|+| ...+||+| +.|++|++||..+++.+..+.. ...|..+.|++..+-|+++ ..++.
T Consensus 337 ~~~~~---H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTE---HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEec---cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 66655 567899999999 45677775 4799999999999998887753 5789999999998665553 45778
Q ss_pred EEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 302 LIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 302 i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
|.||+..+. ......+|...|..++++|++.++++|+.|.++++|++-..
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999998654 34456789999999999999999999999999999997654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=236.01 Aligned_cols=277 Identities=26% Similarity=0.409 Sum_probs=235.0
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEE-EEEcC-CCCEEEEEeCCCcEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSS-LAFSM-DGQLLASGGLDGLVQ 132 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~-v~~s~-~g~~l~t~s~d~~i~ 132 (394)
.+.+.||...|..++.-+ ...++++|.|+++++|+-...+++. .+.+|.+.|.. ++|-+ ++.+|++|+.|.++.
T Consensus 7 s~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 567889999999998865 3468899999999999987666654 57788888877 88875 555799999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
+|.+.+.....++.+|...|.+++...++. +++||.|.++++|..... ...+.+|..+|.++++-|.+ .++||+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999998777776 999999999999987543 34588999999999999987 88999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 292 (394)
++||+|.- ++.++++.+ |.+-|+.+++-+++. +++++.||.|++|++ +|.++..+.+|+.-|+++...+++..
T Consensus 161 KtIklWk~--~~~l~tf~g---HtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSG---HTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred ceeeeccC--Cchhhhhcc---chhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 99999974 566667765 678899999887655 588999999999999 78889999999999999998888999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceeccCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCDHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+++++.|++++||+.. .+.....|+. .++++.+.++|. +++|+.||.||||...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9999999999999976 3444445554 688888777775 6788899999999754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=225.22 Aligned_cols=247 Identities=21% Similarity=0.404 Sum_probs=208.9
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe----------eeEeecCcccCEEEEEEcCCC-CEEEEEeCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDG-QLLASGGLDG 129 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~----------~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~ 129 (394)
-.|.++|+.+...|++..++||++..+.++|||+.+.. +...|.||.+.-++++|++.. -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46999999999999999999999999999999976432 223789999988999999865 4789999999
Q ss_pred cEEEEeCCCCc-------eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCC--ccceeeeecccCcCeEEEEE
Q 016187 130 LVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDF 199 (394)
Q Consensus 130 ~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~ 199 (394)
+|.+||+.... ....+.+|...|..++|++.. .++++++.|+.+.|||++ +.+......+|.+++.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999987542 245678899999999999965 578899999999999999 56666778899999999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--------
Q 016187 200 TP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTG-------- 268 (394)
Q Consensus 200 ~~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~-------- 268 (394)
+| ++..||||+.|++|++||+|+.. +++.+.+ |...|.++.|+|. .+++++++.|+.+.+||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 99 56778999999999999998754 4455544 6788999999996 578889999999999998641
Q ss_pred ------cEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCCCC
Q 016187 269 ------KVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 269 ------~~~~~~~~h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~~ 310 (394)
+++...-+|+..|..+.|+|+.++ ++|.+.|+.+.||.+...
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 235666789999999999999887 678899999999998644
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=233.78 Aligned_cols=321 Identities=17% Similarity=0.304 Sum_probs=253.4
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee---EeecCcccCEEEEEEcCC-----------CCEEEEEeCCCcEE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWA---SEIQGHKDSVSSLAFSMD-----------GQLLASGGLDGLVQ 132 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~---~~~~~h~~~V~~v~~s~~-----------g~~l~t~s~d~~i~ 132 (394)
.-++.|.|+.. .|.-...|..++|||+..-+.+ ..+-.|...|+.+.--|- ..-+.|++.|++||
T Consensus 327 ~IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 34667888644 5666788999999998654322 334458887877765441 22588999999999
Q ss_pred EEeCCCCc---eE----------EEE------------------------ecCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 133 IWDPSSGN---LK----------CTL------------------------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 133 vwd~~~~~---~~----------~~~------------------------~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
+|++..+. .. ... -+..-++.+++.+|++++|++|..-|++++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99986521 10 000 012336899999999999999999999999
Q ss_pred EeCCccceeeeecccCcCeEEEEECC---CCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC--C
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS--T 249 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~ 249 (394)
|++........+.+|...|.|+.|+. ..++||+++.|+.|.|+|+..+- .+.++.+ |...|+++.|...| .
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---HSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---cccceeEEEEeecCCce
Confidence 99999999999999999999999985 35789999999999999986542 2334443 67789999998877 7
Q ss_pred EEEEEeCCCcEEEEECCC---CcEEEE--eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee----ccCCC
Q 016187 250 LALSGSKDGSVHMVNITT---GKVVSS--LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST----CDHED 320 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~---~~~~~~--~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~ 320 (394)
.+++++.|..|.+=-.+. +.+... -......++.|+..|..+++++++.|..|+||++...+.... ..|++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 888999998886533321 221110 111235688999999999999999999999999987654443 34667
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+...|.+-||++.+.|.++.++|..+|+|+.+..||...|+.|.|.+|-+.|+|++.||.|.+|.+.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 78888899999999999999999999999999999999999999999999999999999999999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=212.50 Aligned_cols=267 Identities=22% Similarity=0.363 Sum_probs=216.6
Q ss_pred cccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CceE-EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSS-GNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
..+.|.+|+||| ...+|+.+|.|++||+|++.. |... .....+.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 578899999999 455677899999999999876 3332 2345688999999999999999999999999999999986
Q ss_pred eeeeecccCcCeEEEEECCCCC--eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
...+..|..+|.++.|.+... .|+|||.|++||.||++....+..+.. .+.+.++. -...+++++..++.|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~D--v~~pm~vVata~r~i 178 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL----PERVYAAD--VLYPMAVVATAERHI 178 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec----cceeeehh--ccCceeEEEecCCcE
Confidence 456678999999999987655 899999999999999998888777653 23444443 335688899999999
Q ss_pred EEEECCCCcEEEE-ecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce---eccCC---------CCEEEEE
Q 016187 261 HMVNITTGKVVSS-LVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS---TCDHE---------DGVTCLM 326 (394)
Q Consensus 261 ~i~d~~~~~~~~~-~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~---------~~v~~~~ 326 (394)
.+++|+++..... +.. -.-.+.||++.++....|.|+..|++.|..+....+.. ..-|. ..|+.++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999987643221 111 23468899999998888999999999999887642211 11121 2478899
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
|+|....|+|++.||+..+||......+++...|..+|++-.|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999999999999888899999999999999999999998854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=239.65 Aligned_cols=286 Identities=18% Similarity=0.337 Sum_probs=240.2
Q ss_pred cccCEE---EEEEc-CCCCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 106 HKDSVS---SLAFS-MDGQLLASGGLDGLVQIWDPSSGN------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 106 h~~~V~---~v~~s-~~g~~l~t~s~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
|...|. ++..+ |.+++|+|||.||.|++|+...-. ....++.|.+.|+.+....+++.|+++|.|.+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444555 55555 456789999999999999875432 35567788899999999999999999999999999
Q ss_pred EeCCcc--ceeeeecccCcCeEEEEE-CCCCCeEEEEeCCCcEEEEcCCCCce--EEEEc------CCCCcccCeEEEEE
Q 016187 176 WNADRA--AYLNMFSGHGSSVTCGDF-TPDGKTICTGSDDATLRVWNPKSGEN--IHVIR------GHPYHTEGLTCLTI 244 (394)
Q Consensus 176 w~~~~~--~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~------~~~~~~~~i~~~~~ 244 (394)
|+.... -++..+..|.+.|.|+++ .++...+|||+-|+.|.+||+.++.. +..+. ....+..++.+++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998776 567788899999999999 77888999999999999999998732 22211 11135678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEE
Q 016187 245 SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVT 323 (394)
Q Consensus 245 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~ 323 (394)
.+.+..+++|+..+.|++||.++++.+..+++|++.|.++..+++|..++++|.||+|++||+....+.. ...|...|+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999998765544 456889999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++..+|+-.++.+|+.||.|+.=|+++......+-....+|..+..+.+.+-+-++..|+.|+-|...
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999999999999999999998854444444456788888888766666788999999999764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-30 Score=210.28 Aligned_cols=271 Identities=20% Similarity=0.302 Sum_probs=215.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-Ceee-EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-~~~~-~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.-.+.|.+|+|||....+++.|+-|++||+|+++. +.+. .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 34678999999997778888999999999999976 3433 345679999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+ ...+..|.++|..++|-+... .|++||.|.+|+.||.+....+..+.- ...+.++.. ...+++.+..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEE
Confidence 5 456778999999999988665 899999999999999998877666542 334444433 3457888899999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCC---------CEEEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTD---------SIECIGF 286 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~---------~i~~v~~ 286 (394)
|+++.+.........+ ..-.++|+++.++....+.|+-.|.+.+..+..+ +.-.+++.|.. .|++|+|
T Consensus 181 ynL~n~~te~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9998765432221111 2345889999999888899999999999988776 43445666652 4788999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|....|++++.||+..+||-...... ....|..+|+|+.|+.+|.+++-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999997544322 235688899999999999887754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-30 Score=232.79 Aligned_cols=281 Identities=24% Similarity=0.406 Sum_probs=239.7
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEEecCCCCEEE-EEEcCC-CCEEEEecCCCe
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEW-VSWHPR-GHIVLAGSEDST 172 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~~-~~~l~~~s~d~~ 172 (394)
-++...+.||...|..+++.+. ..++++|.|+++++|+-...+.+ +.+.+|.+-|.. ++|.+. +-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3556789999999999987664 47889999999999998766654 356777777776 888763 346999999999
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
+.+|...+..++..+.+|...|.|++...++. ++|||.|.++++|-. ++....+.+ |...|..+..-|++ .++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g---H~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG---HTASVWAVASLPEN-TYV 155 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC---cchheeeeeecCCC-cEE
Confidence 99999999999999999999999998877776 999999999999975 455555554 56778888888888 789
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 332 (394)
+|+.|.+|++|.- ++.++++.+|++.|..+++-+++. ++|++.||.|++|++.........+|..-|.++....+++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence 9999999999984 788999999999999999998754 7799999999999998777788889999999999888899
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.+++++.|++++||+.. +|.+.+.--.-.|+++.+=++|.. ++||.||.||||...
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 99999999999999865 777777755558999999888775 678899999999764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=228.85 Aligned_cols=281 Identities=21% Similarity=0.367 Sum_probs=235.4
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---eeEeecC--cccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---~~~~~~~--h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..|.+.|.+++.+. ..+.+.||| .+.|+|||+.... .+..|.. ....|+++.+.|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecC-CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 36888889999886 356677765 5899999986532 3333432 346799999999999999999999999999
Q ss_pred CCCCce--EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 136 PSSGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 136 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
+..... ...+......+..++.+|+.++.+++..||.|.|||+.+...++.++||.+.+.|+.++++|..|.+|+-|.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 976543 333444445678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
+||-||++++..+.. |.+ ...|.++..+|++.++++|.+++.+.+...... ....+.-|...|.++.|.+.|+|+
T Consensus 574 tvRcWDlregrqlqq---hdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQ---HDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhh---hhh-hhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence 999999998876533 322 456999999999999999999999999886544 344566689999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 294 ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
++.+.|+.+..|.+-.............|.++..+.+.+||+||+.|.+..+|.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999876655555566778999999999999999999999888864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-28 Score=215.85 Aligned_cols=317 Identities=19% Similarity=0.368 Sum_probs=250.6
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eecCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~~h-~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+.|....|+|.+.++++|.|. +.+.+|+.+.+.+.. .++.+ +..|.||+|.++|.. +||..+|.|.||+..+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTN 277 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCc
Confidence 4567888999999999999865 889999998876554 34443 367999999999975 58999999999999877
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-------------------------------------
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------------------------------------- 182 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~------------------------------------- 182 (394)
+.......|.+.|.+++...+|.+| +|+.|..|..||-.-.+
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 7776666899999999999998755 59999999999832100
Q ss_pred ---eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 183 ---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 183 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
......+|......++.+|+.+++++++.|+.+++|+ ..+...... -.++..|+.|+|.| .++.|...|.
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccce
Confidence 0112357888888999999999999999999999999 333332222 34578899999999 9999999999
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce---eccCCCCEEEEEEeCCCCEEEE
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS---TCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s 336 (394)
..+.|.++...+..-.. .+++++++|+|+|.+||.|+.|+.|.||.+....... -.-+..+++.+.|++|+++|.+
T Consensus 430 w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 99999998666554444 8899999999999999999999999999986542211 1123478999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEE--------------Ee----ecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 337 GCVDGKVRVWDSLSGDCVR--------------TF----SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~--------------~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
-+.|-.|..|.....+.+. -| ..|+..|+.++-+..++++|+|.+.|+|++|.-.
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999999432221111 11 1345567888888889999999999999999743
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=208.64 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=203.0
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC--eEEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~ 220 (394)
..+..|.+++++++.+ +.++++|+.|-+|+|||+.+.+.+..+..|.+.|+++.|.+.-. .|++|+.||.|.+|+.
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 4456788999998865 78999999999999999999988888889999999999998654 8999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-..+..+++| ...|+.++++|.+++.++-+.|+.+++||+-.|+.-..+.- ....+-|.|+|.|.+++.++.+
T Consensus 115 ~~W~~~~slK~H---~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 115 GSWELLKSLKAH---KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred CCeEEeeeeccc---ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-
Confidence 888888888864 55699999999999999999999999999998875444322 2223348999999988877755
Q ss_pred cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEE--ccCCCEEEE
Q 016187 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV--SAHQDFLVS 378 (394)
Q Consensus 301 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s 378 (394)
.|-+|.+...........+..+.|+.|. ++.+|++|..|+.|++||.....++..+.+|...|.++.+ .|++.||+|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 5889988765443334444557777765 5678999999999999999999999999999999999974 467889999
Q ss_pred EeCCCcEEEEeccC
Q 016187 379 VSLDGTARVFEIAD 392 (394)
Q Consensus 379 ~s~dg~i~iw~~~~ 392 (394)
+|.||.|++||++.
T Consensus 269 aSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDM 282 (362)
T ss_pred eccCceEEEEEccc
Confidence 99999999999875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=208.58 Aligned_cols=267 Identities=17% Similarity=0.291 Sum_probs=216.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..+.|++|.|+|.++.|+.++.||++++|+......+..+. +..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36889999999999999999999999999998776555544 778999999997 4568999999999999999887543
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+..|..++.|+.+.+....+++|+.|++|++||++.......+. ....|.|+... +..|++|+.+..+.+||+
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 45699999999999988899999999999999998643333322 23467776654 778999999999999999
Q ss_pred CCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----Ccce-eccC---------CCCEEEEEEeC
Q 016187 266 TTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS----LPRS-TCDH---------EDGVTCLMWLG 329 (394)
Q Consensus 266 ~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~-~~~~---------~~~v~~~~~~~ 329 (394)
++.....+.. .-.-.+.||++-|++.=.+.+|.||++.+=.+... ..+. +.-| -.+|++++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 9876443221 23457899999998888899999999987555432 1110 1111 13689999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
-.+.++||+.||.|.+||..+.+.++.|......|.+++|+.+|..||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999999988888999999999999998875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=206.14 Aligned_cols=300 Identities=18% Similarity=0.344 Sum_probs=233.5
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe------ee----E-----eecCcccCEEEEEEcC-CCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WA----S-----EIQGHKDSVSSLAFSM-DGQ 120 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~------~~----~-----~~~~h~~~V~~v~~s~-~g~ 120 (394)
..+...|.+.|+++...|..++++.+|+.|+.+.+||++... ++ . .-.+|+-.|.++.|-| |..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 344567999999999999999999999999999999986532 11 1 1146888999999998 456
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC---CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
.+.++|.|.+++|||.++-+....++. .+.|..-+++|-. .++++|..+-.|++.|+.++.+...++||.+.|.++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 888999999999999998887766653 4568888888843 367888889999999999999999999999999999
Q ss_pred EECCCCCe-EEEEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 198 DFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 198 ~~~~~~~~-l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
.|+|...+ |++|+.||.||+||++.. .+...+..|. + .....+++-.
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn--------------~-----------------k~~p~~~~n~ 243 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN--------------T-----------------KRPPILKTNT 243 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeeccc--------------C-----------------ccCccccccc
Confidence 99998776 689999999999998743 2222222110 0 0112233345
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc----eeccCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR----STCDHED----GVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~----~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+|.+.++.++|+.++.++++++.|.++++|+....... ....|+. .+. +. +.+...++---.++.+.+++
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEE
Confidence 68999999999999999999999999999998654211 1111211 121 22 33344444445679999999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+..+..++.+.+|...|.+.++.|+-+...+|..|+.|..|-.
T Consensus 322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999999999999999999999965
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=226.27 Aligned_cols=325 Identities=22% Similarity=0.354 Sum_probs=254.8
Q ss_pred EEEEEcC-CCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc-
Q 016187 68 YSVACSP-TDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQ---LLASGGLDGLVQIWDPSSGN- 140 (394)
Q Consensus 68 ~~~~~~p-~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~---~l~t~s~d~~i~vwd~~~~~- 140 (394)
.|+++.| .+..++|-|+.+..+.++.-..++ ....+.||.+.|++++|...+. +||++|.|..||||.+.-+.
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 3455566 344577888888888888866544 4567899999999999987554 78999999999999753221
Q ss_pred --------------------eEE----------EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-------e
Q 016187 141 --------------------LKC----------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-------Y 183 (394)
Q Consensus 141 --------------------~~~----------~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-------~ 183 (394)
... .+.+|.+-|.++.|+|.+..|+++|.|.++.+|...+.. .
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 010 123899999999999999999999999999999876542 1
Q ss_pred eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 184 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
+-.+.|.......+.|+|+++.+++-+..|..++|..+.............|..+|+.++|+|.|.++++.+.|.+-|+|
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 22233445567888999999999999999999999854433333333445688899999999999999999999999998
Q ss_pred ECCCC----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----------------------------
Q 016187 264 NITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS----------------------------- 310 (394)
Q Consensus 264 d~~~~----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~----------------------------- 310 (394)
-.-.. ..+..-+-|.-.+.|++|-+....+++|.....+++|+....
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 65411 123334557788999999987677888888888899874200
Q ss_pred ------C------------------------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCC-
Q 016187 311 ------L------------------------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDG- 341 (394)
Q Consensus 311 ------~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg- 341 (394)
. ..+..+|...|.+++.+|+++++|+++...
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~ 548 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL 548 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence 0 011235788899999999999999998654
Q ss_pred ----eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 342 ----KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 342 ----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|++|+..+...++.+.+|.-.|+.|+||||+++|+++|.|+++.+|+..+
T Consensus 549 ~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 549 KEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred ccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeec
Confidence 599999999999999999999999999999999999999999999998753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=201.54 Aligned_cols=245 Identities=22% Similarity=0.328 Sum_probs=201.7
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEe
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~ 177 (394)
...|.+.|..+...--|++|||++.|++|||+...+. +++.++.+|.++|..++|.. .|.+|++++.||.+.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4579999999999889999999999999999998754 46788999999999999976 689999999999999999
Q ss_pred CCccce--eeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---C--
Q 016187 178 ADRAAY--LNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---S-- 248 (394)
Q Consensus 178 ~~~~~~--~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-- 248 (394)
-++++- ...+..|...|++++|.|. |-.|++++.||.|.|.+.+.......-+-...|.-+++++++.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887743 3456789999999999985 678999999999999987654111111222357778999999886 4
Q ss_pred ---------CEEEEEeCCCcEEEEECCCCc--EEEEeccCCCCEEEEEECCCC----CeEEEEeCCCcEEEEeCCCCCc-
Q 016187 249 ---------TLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRSS----PWAATGSMDQKLIIWDLQHSLP- 312 (394)
Q Consensus 249 ---------~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~v~~~~~~----~~l~s~s~dg~i~iwd~~~~~~- 312 (394)
+.|++|+.|..++||+..+++ .-.++.+|.+.|..++|.|.- .++|++|.||++.||.......
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999998763 334588999999999999974 4799999999999998753211
Q ss_pred ---ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 313 ---RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 313 ---~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.........+..+.|+..|+.|+.++.|.+|++|-
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 11223456799999999999999999999999995
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=215.05 Aligned_cols=292 Identities=23% Similarity=0.396 Sum_probs=230.4
Q ss_pred cEEEEecCCCe-EEEEEcCCCeeeEeecCc-ccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEecCCCCEEE
Q 016187 78 TLVATGGGDDK-GFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEW 154 (394)
Q Consensus 78 ~~lasg~~d~~-v~~w~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 154 (394)
.++.+++.|-. +.+||+.+|....++++- ...-.++..- .+.+++++. .-..|.+|.+..........--.++|.+
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA 86 (476)
T ss_pred EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceee
Confidence 34555566655 889999999888777764 1111111111 235666664 3457889998765544322334578999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---------Cce
Q 016187 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GEN 225 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~ 225 (394)
++-+|.|.+|+.|+..+.|++|.+.++..+..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.. -+.
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998632 123
Q ss_pred EEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 226 IHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
++.+.. |.-+|+.+.+.+. ..++++++.|.++++||+..+.++.++. ....+.+++++|....+..|+.+|.|.
T Consensus 167 ~~~f~~---HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 167 LHIFSD---HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred eeeecc---CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 334433 5667888877764 4689999999999999999999888775 457899999999999999999999999
Q ss_pred EEeCCCCC-----------------cceeccCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce
Q 016187 304 IWDLQHSL-----------------PRSTCDHED--GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI 364 (394)
Q Consensus 304 iwd~~~~~-----------------~~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 364 (394)
+.++.... .....+|.. .|+|++.+.|+..|++|+.||+|+|||+.+.++++++.--.++|
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 88764321 122346777 89999999999999999999999999999999999888668899
Q ss_pred eEEEEccCCC
Q 016187 365 QAISVSAHQD 374 (394)
Q Consensus 365 ~~l~~~~~~~ 374 (394)
+.+.+.|-.+
T Consensus 323 tnL~i~~~~~ 332 (476)
T KOG0646|consen 323 TNLQINPLER 332 (476)
T ss_pred ceeEeecccc
Confidence 9999965433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=215.10 Aligned_cols=245 Identities=21% Similarity=0.352 Sum_probs=209.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
...++.|-.++|+++.|.+.+...| +.+.|+.+++|++...+...+|.||++.|+++.|......+++|+.|.+|++||
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~i-Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVI-AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEE-eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 4566778888999999999766555 468999999999999999999999999999999998877799999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
+....+..++- +...+..+..+ ...+++|-.|+.|+.||.+...+......++ .|+++..++++..|++++.|.++
T Consensus 290 l~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 290 LQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred hhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCce
Confidence 98877665432 33445555555 4567888899999999999998888887776 89999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCCe
Q 016187 216 RVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSPW 292 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~~ 292 (394)
.+.|+++.+....+....+ .....+.+.|||++.|+++|+.||.|+||++.++++.+.+..... .|+++.|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 9999999887776654322 123478899999999999999999999999999999888766544 4999999999999
Q ss_pred EEEEeCCCcEEEE
Q 016187 293 AATGSMDQKLIIW 305 (394)
Q Consensus 293 l~s~s~dg~i~iw 305 (394)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-27 Score=185.68 Aligned_cols=281 Identities=20% Similarity=0.348 Sum_probs=225.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeC------CCCc--------eEEE-EecCCCCEEEEEEcCCCCEEEEecCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP------SSGN--------LKCT-LEGPGGGVEWVSWHPRGHIVLAGSED 170 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~------~~~~--------~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d 170 (394)
....|++++|+|.|.+.+.|+...+++|.-. ..+. .+++ -+.|.+.|.+.+|+|.|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4567999999999999999999999998742 1111 1121 24578899999999999999999999
Q ss_pred CeEEEEeCCccce-----eeeecccCcCeEEEEECCC----CCeEEEEe-CCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 171 STVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPD----GKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 171 ~~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~----~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
.+|++...+...+ -..+.-|.+.|..++|..+ +..|++++ .|..|.+-|..+|+..+.+.+|.. .|.
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg---hil 187 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG---HIL 187 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc---cEE
Confidence 9999986654322 2346678999999999643 45677665 466777788888998888877544 455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--C-----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--H-----TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR 313 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h-----~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 313 (394)
.+ ++-++-++++|+.|.+|++||++-..++.++.. | ...|.+++..|.+++|++|-.|....+||++...+.
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 44 445688999999999999999998888777642 2 356899999999999999999999999999876544
Q ss_pred -eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 314 -STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 314 -~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....|...|.|+.|+|..-|+++++.|.+|++=|+. |.+ +-....|...+..+.|+|..--++|.|.|.++.+
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 456788999999999999999999999999999875 332 2234578888889999999999999999999999
Q ss_pred Eecc
Q 016187 388 FEIA 391 (394)
Q Consensus 388 w~~~ 391 (394)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=213.93 Aligned_cols=264 Identities=24% Similarity=0.369 Sum_probs=218.5
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
...+..|.-+|.+|+++|++.+.++++.+++|.-|++.+|+... .++.. .|....+.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~~~~~------------------- 193 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKSHGNP------------------- 193 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhhccCC-------------------
Confidence 34567899999999999999999999999999999999887542 22211 110001111
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
.+. .. .+|...+.+++.++||++|++|+.|..|.||+..+.+.++.+++ |...|.+++|-....-+++++.|+
T Consensus 194 --~k~-~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g---hr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 194 --LKE-SR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG---HRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred --CCc-cc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc---cccceeeeeeecCccceeeeecCC
Confidence 000 11 37999999999999999999999999999999999998888776 577899999998888999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
++++|++.....+.++.+|.+.|.++......+.+-.|+.|.++++|++.........++...+-|++|-.+ ..+++|+
T Consensus 267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred ceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeecc
Confidence 999999999989999999999999998887777777778999999999966555566778888999998755 5788999
Q ss_pred CCCeEEEEECCCCeEEEEee-ccc-----------CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 339 VDGKVRVWDSLSGDCVRTFS-GHR-----------DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~~-~h~-----------~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+|.|.+|++...+++.+.. .|. ..|++|+..|..+++||||.+|.||+|.+.+
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 99999999999888877543 231 2689999999999999999999999999864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=217.08 Aligned_cols=281 Identities=21% Similarity=0.369 Sum_probs=237.8
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.|.+-|-++.+|...++++||+. |.|+|||+.... .+..+ ......++++.++|+++.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48888999999999999999985 679999986542 12222 2345678999999999999999999999999987
Q ss_pred ccc--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 180 RAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 180 ~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
... ....+......+..++.+||.+..++++.||.|+|||+.+...+..+.+ |.++..|+.++++|..|.+|+.|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG---htDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC---CCCCceeEEecCCCceeecCCCc
Confidence 543 2223333345567789999999999999999999999998777766665 67899999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.+++-||++.++.+.... ....|.++..+|++.|||.|=..+.+.+-............|+..|.++.|.+-|+++++.
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec
Confidence 999999999987665432 3578999999999999999999999999887766666667789999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.|..+..|....|..+...+. ..+|.+..++.|.+||+|||.|....+|.+.
T Consensus 652 GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 9999999999998988877764 5689999999999999999999999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=217.11 Aligned_cols=319 Identities=18% Similarity=0.286 Sum_probs=246.1
Q ss_pred CCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCCC
Q 016187 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDG 129 (394)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d~ 129 (394)
..|.....+|.||++.|.+|...| .+..||+|+.||+++||.+.++.++.++. -.+.|.||+|+|.+.. ++.++...
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 356667888999999999999999 56799999999999999999999998775 3457999999998763 33334445
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe----cCCCeEEEEeCCc----cceeeeecccCcCeEEEEECC
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG----SEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~ 201 (394)
.+.|-+..-|..+.... ....|+++ ..+..+..|.-.. ..-++..-.|..+|..+.|+.
T Consensus 465 ~~~ivnp~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred ceEEeCccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 57777766553221100 00111121 2345677786542 122345556889999999999
Q ss_pred CCCeEEEEeCC---CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 202 DGKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 202 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.|.||++...+ ..|.|+++........++. ..+.+.++.|+|...++++++. ..|++||+..+.+++.+....
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhh---cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence 99999988664 5688999876654433322 2345788999999999888865 679999999988888887788
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-------
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL------- 349 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~------- 349 (394)
..|..++++|.|.-|+.++.|+++..||+.-. -......|...++.++|++.-.++++|+.||++.||...
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 89999999999999999999999999998644 233445688999999999999999999999999999532
Q ss_pred C--CeEEEEeecccCc----eeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 350 S--GDCVRTFSGHRDA----IQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 350 ~--~~~~~~~~~h~~~----v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
+ -..++.+.||... |....|+|...+|+|++.||+||+|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 1346778898755 8889999999999999999999998
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=206.22 Aligned_cols=268 Identities=12% Similarity=0.169 Sum_probs=205.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
+..+++++.|+.|++||+.+++.+..+..+. .+..++|+|++..+ ++++.++.+++|+..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999998888877554 46779999999866 5677899999999998877766655443 4678
Q ss_pred EECCCCCeEEE-EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEec
Q 016187 198 DFTPDGKTICT-GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLV 275 (394)
Q Consensus 198 ~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~ 275 (394)
+|+|+++.+++ ++.++.|++||+.+++.+..+.. ...+..+.++|++.++++++.++ .+.+||..+++.+..+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 89999997755 45689999999998776665542 12356789999999999988775 46778998887766543
Q ss_pred cCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceecc------CCC--CEEEEEEeCCCCEEEE-EeCCCeEEE
Q 016187 276 SHTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCD------HED--GVTCLMWLGTSKYVVT-GCVDGKVRV 345 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~------~~~--~v~~~~~~~~~~~l~s-g~~dg~i~i 345 (394)
. ...+.+++|+|++.+++ ++..++.|++||+.+........ +.. ....++|+|++++++. .+.++.|.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 33457899999999875 44569999999998654322211 111 2346789999998654 355778999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEE-eCCCcEEEEeccCCC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV-SLDGTARVFEIADFK 394 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iw~~~~~~ 394 (394)
||..+++.+..+. +...+.+++|+|++++|+++ +.+|.|++||+...+
T Consensus 234 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 234 VDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999998876654 34578999999999999876 569999999988653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=194.68 Aligned_cols=268 Identities=19% Similarity=0.326 Sum_probs=213.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.|.++.|+|....||++ +.|+.+++|++...++...++ |..++.+++|.++ ..+++|+.||.|+++|+++++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEE-eccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence 6789999999977766665 699999999998887666665 9999999999874 57889999999999999988754
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 223 (394)
.+..|.+++.++.+.+....+++|+.|++|++||.+.......+. ....|.++.. .|+.|+.|+.|..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 455688999999999988999999999999999998754444333 2337777655 4778999999999999999987
Q ss_pred ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCC---------CCEEEEEECCCC
Q 016187 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLVSHT---------DSIECIGFSRSS 290 (394)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~---------~~i~~v~~~~~~ 290 (394)
......+.. .....++|+++-|++.-+++++-||.+.+=.+... +.-..+..|. -+|++++|+|-.
T Consensus 166 ~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 166 DEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred cchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 654432222 22345889999998888899999999887555443 2233455564 279999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
..||||+.||.|.+||+..++... ....+..|.+++|+.+|..||.|+.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999997654332 2334567999999999999999873
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=220.05 Aligned_cols=280 Identities=18% Similarity=0.269 Sum_probs=232.1
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+|+..-+.|+|.|++ .+|.++|.|+.|++|+.... +...++.-|...|.+++. .+.+|++|+.+++|.+|...++
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 3789999999999965 48899999999999997665 444455557888887765 4569999999999999999988
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
+.-..+....-+++.++++.+|++++.||.|-.|++.++......+.+.+|..+|.++.|+|.+++||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 77656666667899999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCC----c-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEEEEEECCCCCe
Q 016187 220 PKSGENIHVIRGHPY----H-TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGFSRSSPW 292 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~v~~~~~~~~ 292 (394)
+.++...+.+.+... . ...+..++|+|++..+++-..|+.|++|+.........+.. +...+.+++|+|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998887766654321 1 33456789999998889999999999999998887776643 4455999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
||+++.+|.|.|||..+-.. ......|+|++|.|+.+-+-.-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999986211 2234579999999998766555555555554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=195.29 Aligned_cols=280 Identities=15% Similarity=0.251 Sum_probs=220.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
-.|+.|++.|.+||+|..||.|.|||+.+...-..+.+|-.+|.+++|+++|+.|+++|.|..+.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6789999999999999999999999999998888888999999999999999999999999999999999998877764
Q ss_pred cCcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCCCceEEEEcCCC-C-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 190 HGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGENIHVIRGHP-Y-HTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 190 h~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
..++|+.+.|+|..+ .++..-.+..-.+-++..+.. ..+.... . ......+..|.+.|+++++|...|.+.+++..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 567899999999543 333333344444444443221 1111110 0 01112334688999999999999999999999
Q ss_pred CCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-------ee-----ccCCCCEEEEEEeCCCCE
Q 016187 267 TGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-------ST-----CDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 267 ~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~ 333 (394)
+.+++..+.--. ..|..+.++..+.+|+..+.|..|+.|+++.-... .. ........+++|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999988876655 78999999999999999999999999998632111 00 011223567889999999
Q ss_pred EEEEeC-CCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 334 VVTGCV-DGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 334 l~sg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+++|+. -..++||....|.+++.+.|-. .....+.|+|-.+.++|- ..|.++||....
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 998874 3569999999999999999987 556789999999999988 789999998653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=207.49 Aligned_cols=265 Identities=21% Similarity=0.304 Sum_probs=214.0
Q ss_pred EEeCC-CcEEEEeCCCCceEEEEecCCCCE-EEEEEcCCCCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEEEEEC
Q 016187 124 SGGLD-GLVQIWDPSSGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 124 t~s~d-~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~ 200 (394)
+++.| .++.+||+.+|....++++..... ..+.. -.+.+++++. .-..+.+|.+..........--.+++.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 459999999999888887652211 11111 1224555554 44578899987665444333446789999999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEE
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT---------TGKVV 271 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~---------~~~~~ 271 (394)
|.|.+|+.|+..|.|.+|.+.+|..+..+.. |-..|+|+.|+.|+.++++|+.||.|.+|.+. +-+++
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSA---HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHh---hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 9999999999999999999999998877754 56789999999999999999999999999874 23567
Q ss_pred EEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 272 SSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..+..|+-+|+.+.+.+. ..+++|+|.|.++++||+...........+..+.+++..|..+.+..|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 888899999999988765 468999999999999999888766667778889999999999999999999999998753
Q ss_pred C----------------CeEEEEeecccC--ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 350 S----------------GDCVRTFSGHRD--AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 350 ~----------------~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
. +..+..+.||.+ .|++|+++.||.+|+||+.||.|+|||+..
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 2 334567889998 999999999999999999999999999753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=213.17 Aligned_cols=291 Identities=20% Similarity=0.301 Sum_probs=233.6
Q ss_pred eeeeccCCcEEEEEEcCCC----------CcEEEEecCCCeEEEEEcCCCe---e----------eEe------------
Q 016187 58 HIFSGHSDEVYSVACSPTD----------ATLVATGGGDDKGFFWRINQGD---W----------ASE------------ 102 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~----------~~~lasg~~d~~v~~w~~~~~~---~----------~~~------------ 102 (394)
..+.-|...|+.+.--|.+ ..-|.|++.|++|++|++.... . +..
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3345688888887655511 1237899999999999986421 0 000
Q ss_pred ------------ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC---CCEEEEe
Q 016187 103 ------------IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR---GHIVLAG 167 (394)
Q Consensus 103 ------------~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~ 167 (394)
.-+-+-.+++++.||+|++||+|..-|+++||++..-+.++++..|...|.++.|+.. .++|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 0112457999999999999999999999999999999999999999999999999853 4689999
Q ss_pred cCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCC--CeEEEEeCCCcEEEEcCCC-Cc--eEEEEcCCCCcccCeEE
Q 016187 168 SEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG--KTICTGSDDATLRVWNPKS-GE--NIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 168 s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~i~~ 241 (394)
+.|.-|.+||+... .+++++.+|...|+++.|...| ..+++++.|+.|. ++... .. .+..-..+......+.-
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEE
Confidence 99999999998764 4567889999999999999877 6789999999874 33321 11 11111111222345778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eecc
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCD 317 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~ 317 (394)
+.+.|..+++++++.|..|+||++.+++..+.+++ |.+..-.+...|.+-|+|+...|.++.++|.-+..+. ...+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 89999999999999999999999999999988865 6667778899999999999999999999998776554 4578
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|...|+.+.|.+|-+.|++.+.||-|.||.+.
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999999999999999999999999999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=228.71 Aligned_cols=253 Identities=25% Similarity=0.439 Sum_probs=224.6
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
++..+..+..+++|+... +-.|...|.++..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 445555666677888643 56688889999887788999999999999999988777777889999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccC
Q 016187 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+...+|++|+.+|+|++||++..+.++.+.||...+.+++|+|-+.++++|+.|+-+++||.+...+.+.+++ |...
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~v 156 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRV 156 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---Ccce
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888776 5677
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-cc
Q 016187 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CD 317 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~ 317 (394)
+.++.++|+|++++.|++|.++++||+..|+.+..|..|+..+..+.|+|..-++++|+.|+++++||+++...... ..
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543322 23
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCC
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
....|.|+.|+|++..+++|...
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCceeeeecCCceeeecCchh
Confidence 35679999999999999888654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=215.64 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=221.4
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~ 183 (394)
+|+..-+.|+|.|+|++|+|++.|+.|++|+..+- +...++..+...|.+++- .+.+|++|+.+++|..|....+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 68999999999999999999999999999997665 333333335666666654 455899999999999999987765
Q ss_pred eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 184 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
-..+....-++++++|+-+|+++|.|+.|-.|++-++.+......+++ |..+|.++.++|.+.+|++.+-||.|++|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---HDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---cCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 555555677899999999999999999999999999988887777776 56789999999999999999999999999
Q ss_pred ECCCCcEEEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCC
Q 016187 264 NITTGKVVSSLVS--------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSK 332 (394)
Q Consensus 264 d~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~ 332 (394)
++.++.+..++.. ....+..++|+|++..++..+.|+.|++|+.......... .+...++++.|+|.|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9999887666543 1345678999999888899999999999998766444332 2344589999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
|||+++.+|.|.|||+.+-.. +.-...|.+++|.|+++.+-.-...|+.
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred EEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccc
Confidence 999999999999999987222 2234579999999998876554444443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=211.96 Aligned_cols=313 Identities=19% Similarity=0.333 Sum_probs=231.7
Q ss_pred CCCCcEEEEecCCCeEEEEEcCCCeee------EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--E
Q 016187 74 PTDATLVATGGGDDKGFFWRINQGDWA------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--L 145 (394)
Q Consensus 74 p~~~~~lasg~~d~~v~~w~~~~~~~~------~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~--~ 145 (394)
|...++||-+..||.|.++|.....+. .....|...|..+.|.|....|++++.|.++++||++++++... +
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence 344678999999999999997654433 44568999999999999667899999999999999999988766 8
Q ss_pred ecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc---------------------------eeeeecccCcCeEE-
Q 016187 146 EGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA---------------------------YLNMFSGHGSSVTC- 196 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~---------------------------~~~~~~~h~~~v~~- 196 (394)
.+|.+.|.+++|+|.+. .+++|+.||.|.|||.+-.. .+.....+...+.+
T Consensus 141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 89999999999999765 78999999999999974211 11122344445555
Q ss_pred --EEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEc-----CCCCc---ccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 197 --GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 197 --~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-----~~~~~---~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+-+..|...||+++. |+.|+|||+++........ ..+.+ ..+++++.....|.++++.+.|++|++||+
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 556678889999888 9999999999876543322 11122 346888999999999999999999999999
Q ss_pred CCCc--EEEEeccCCC---CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCC-CEEEEE
Q 016187 266 TTGK--VVSSLVSHTD---SIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTS-KYVVTG 337 (394)
Q Consensus 266 ~~~~--~~~~~~~h~~---~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~sg 337 (394)
.+.. ++..+.++.. .+. -..+|++.++++|+.|....+|.+.+.. +....+|...|++++|.|.. .-++++
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred cccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence 8643 2333332221 122 2368999999999999999999997653 33456899999999998754 457777
Q ss_pred eCCCeEEEEECCCCe--------------EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 338 CVDGKVRVWDSLSGD--------------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.|..+++|++..+- ..++|++|...+..+.++..+.+.... .+..++|.
T Consensus 380 SdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred ccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence 999999999975432 234567787777777666544443332 44444443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=205.98 Aligned_cols=245 Identities=20% Similarity=0.340 Sum_probs=196.1
Q ss_pred cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc----------eeeeecccCcCeEEEEECCC-CCeEEEEeCCCc
Q 016187 147 GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA----------YLNMFSGHGSSVTCGDFTPD-GKTICTGSDDAT 214 (394)
Q Consensus 147 ~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 214 (394)
.|.+.|+.+++-|+.. ++++.+..+.++|||..+-. +...+.||...-.++.|++. .-+|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4788899999999875 66777888999999975321 11257789887788999984 457899999999
Q ss_pred EEEEcCCCCce----EEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEEC
Q 016187 215 LRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 215 i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~ 287 (394)
|++||+..... +........|...|.-++|++ ...++.+.+.|+.+.|||++ +.++.+...+|...|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999875432 111111234677788899998 45678889999999999999 566677788999999999999
Q ss_pred CCC-CeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC------------
Q 016187 288 RSS-PWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSG------------ 351 (394)
Q Consensus 288 ~~~-~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~------------ 351 (394)
|-+ .+||+||.|++|++||++.. ......+|...|.++.|+|.. ..||+++.|+++.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 965 56899999999999999864 334456899999999999975 57888899999999997431
Q ss_pred --eEEEEeecccCceeEEEEccCCCE-EEEEeCCCcEEEEecc
Q 016187 352 --DCVRTFSGHRDAIQAISVSAHQDF-LVSVSLDGTARVFEIA 391 (394)
Q Consensus 352 --~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iw~~~ 391 (394)
+++....||...|..+.|+|+.+. |+|++.|+.+.||++.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234556799999999999998775 7799999999999976
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=200.34 Aligned_cols=282 Identities=18% Similarity=0.257 Sum_probs=226.1
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--CeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~ 140 (394)
.+.|+++.|||. ..+|.++|.|++++||.+.. ...+..+.--.-+|.+.+|.|+|. .+++++.-..++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999995 66888999999999998753 345566655678999999999998 89999999999999999887
Q ss_pred eEEE--EecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 141 LKCT--LEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 141 ~~~~--~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
.... +.++ ...+.....+|++++++..+..|.|.+....++..+..++ -.+.|..+.|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 2222 2356667788999999999999999999999888877765 3457889999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccCCCCEEEEEECCCCC
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
||++...+++.+.... .-.-++++.++++.++++|+..|.|.|||..+ .+++.++..-...|+.++|+++.+
T Consensus 371 ~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 9999998887775321 12346788899999999999999999999654 456777777788999999999999
Q ss_pred eEEEEeC--CCcEEEEeCCCCCcceec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 292 WAATGSM--DQKLIIWDLQHSLPRSTC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 292 ~l~s~s~--dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+||.+|. ...+++--+.....-... ..-..|+|++|+|.+.+++.|-.+|++.+|.+.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9887765 567888766432111111 112348999999999999999999999999753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=219.64 Aligned_cols=275 Identities=22% Similarity=0.384 Sum_probs=215.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEe--cC---CCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCc-
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLE--GP---GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR- 180 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~--~~---~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~- 180 (394)
..+|...++-..++.++. ..++||..+... ..+.+. .. .-.+..|+|+. ..++|++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 455666788878877764 467888765432 122221 11 11345577874 357899999999999999987
Q ss_pred --cceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeC
Q 016187 181 --AAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSK 256 (394)
Q Consensus 181 --~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~ 256 (394)
.+.+..|..|...+.++.|++ .-.+|++|++||+|++||++..+...++.+ ..+.|+-+.|+| .+..++++..
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceEEEecC
Confidence 566778889999999999998 456889999999999999998887776665 456799999999 5678899999
Q ss_pred CCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCE
Q 016187 257 DGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 257 dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 333 (394)
.|.+++||++.. ++..++.+|.++|.|+.|+|++.|||||+.|+.|+|||+...... ....-..+|.++.|-|..++
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999999875 466778899999999999999999999999999999999854332 23334567999999998876
Q ss_pred E-EEEe--CCCeEEEEECCCCe-EEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEE
Q 016187 334 V-VTGC--VDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVF 388 (394)
Q Consensus 334 l-~sg~--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw 388 (394)
. ++++ .|..|+|||++..- +..+|..|+..++.++|.. |...+.+++.||+|..-
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 4 4443 47889999987654 4568899999999999975 56788999999987543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=202.03 Aligned_cols=283 Identities=21% Similarity=0.357 Sum_probs=231.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee-eEeecCcc-cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~-~~~~~~h~-~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
-..+|.++|++...+ -||.+-.|+.|.+|++...=+ ...+.|+. ..|.+++|+ +|..|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 357899999998644 578889999999999977543 34566665 579999999 46678899999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
.+..+....+.|++++.+|.+..++.|+.||.++.++...++.. +.+....+.+.+++|+|++..+++|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 99999999999999999999999999999998888887765543 3444456899999999999999999999999999
Q ss_pred cCCCCceEEEEcC--CCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 219 NPKSGENIHVIRG--HPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 219 d~~~~~~~~~~~~--~~~---~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
|..+++.++.... ... ...-+.++.+-.+ ..+++|...|+|.+||...+.++.++..|...|.|++..++..++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 9999988773321 111 1112445555444 467899999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCc-----ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 294 ATGSMDQKLIIWDLQHSLP-----RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
.+++.|+++..|...+... .....|...|.+++..++ .+++|+.|..+.+-.++.
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999988765532 223457778999988876 899999999999876543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=226.04 Aligned_cols=242 Identities=25% Similarity=0.460 Sum_probs=220.8
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..++.+..|...|.++..- ...+.+++||.|..+-+|.+.....+..|.+|..+|.++.|+++..+|+.|+.+|+|++|
T Consensus 19 ~~~~~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred ccchhhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 3456677899999888873 356789999999999999998888888899999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|+..++.+.++.+|...+..+.|+|-+.+.+.|+.|..+.+||.+...+...+.+|...+.+++|+|+|+++++|+.|.+
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
++|||...|+.+..+.. |...+.++.++|..-++++|+.|+++++||+++-..+.+.......|.+.+|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 99999998887777665 566788889999999999999999999999999888888877789999999999999998
Q ss_pred EEeCCC
Q 016187 295 TGSMDQ 300 (394)
Q Consensus 295 s~s~dg 300 (394)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 886553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=197.47 Aligned_cols=283 Identities=16% Similarity=0.250 Sum_probs=229.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccce
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAY 183 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~ 183 (394)
...|++|.|+|....|++|+.|++++||-+.. ...+..+....-+|.+.+|+|+|+ .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999997653 234555555677899999999999 889999999999999988765
Q ss_pred ee--eecccC-cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 184 LN--MFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 184 ~~--~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
.+ ...++. ..+....++|++++|+..+..|.|.+.-..+++.+..++. .+.+..++|+.+++.+++.+.+|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEEcCCceE
Confidence 43 333443 3456678899999999999999999999999887777662 4568889999999999999999999
Q ss_pred EEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC------cce-eccCCCCEEEEEEeCCCC
Q 016187 261 HMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL------PRS-TCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~-~~~~~~~v~~~~~~~~~~ 332 (394)
.+||++...+++.+.... -.-++++.++++.|||+||..|.|.|||..+.. +.. .......|+.+.|+++.+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999999888876421 123567788999999999999999999965321 111 123446799999999999
Q ss_pred EEEEEeC--CCeEEEEECCCCeEEEEeecc---cCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 333 YVVTGCV--DGKVRVWDSLSGDCVRTFSGH---RDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 333 ~l~sg~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.|+.+|. +..+++-.+.+......+..- -+.|+||+|+|.+-+||.|-.+|.+.+|.+.-|
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 9988764 567888888777666655433 246899999999999999999999999998643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=188.71 Aligned_cols=285 Identities=20% Similarity=0.267 Sum_probs=206.8
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eec--CcccCEEEEEEcCCCCEE-EEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQ--GHKDSVSSLAFSMDGQLL-ASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~--~h~~~V~~v~~s~~g~~l-~t~s~d~~ 130 (394)
...++.||.++|++++|+. ++..|||+++|++|++|++...+... .++ -.-+--+.+.|+||-+-+ +++-...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 3456789999999999997 56789999999999999986532110 011 012345789999998754 45555668
Q ss_pred EEEEeCCC---CceEEE---------EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 131 VQIWDPSS---GNLKCT---------LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 131 i~vwd~~~---~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
+++|.+.. |..... -+.|.-.+-.+-....+.++++++.|..|.+|++. ++.+..+......-...+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99997532 221111 12244455566666778899999999999999998 777777766666667789
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCC---CCc-----eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---
Q 016187 199 FTPDGKTICTGSDDATLRVWNPK---SGE-----NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT--- 267 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~---~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~--- 267 (394)
.+|+|+++++++..--|++|.+- .|. .+..+++ |...|.+++|+++...+++.+.||++++||..-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc---chhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 99999999999999999999863 221 2233444 677899999999999999999999999999742
Q ss_pred ----CcEEEEe----ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 268 ----GKVVSSL----VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 268 ----~~~~~~~----~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.+.++.. ..-......+.++|++..||.+. ...+++|..+.... .....|...|.+++|+++|++++++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 1222222 11122233789999999887654 55799998776432 2234688899999999999999987
Q ss_pred eCCCeEEEEE
Q 016187 338 CVDGKVRVWD 347 (394)
Q Consensus 338 ~~dg~i~iwd 347 (394)
+ |..++++.
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 6 67777764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=202.09 Aligned_cols=290 Identities=16% Similarity=0.207 Sum_probs=227.2
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcc--cCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC--CceEEEEecCCCCE
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSS--GNLKCTLEGPGGGV 152 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~--~~V~~v~~s~~g~~l~t~--s~d~~i~vwd~~~--~~~~~~~~~~~~~v 152 (394)
++|++| .++++||+...+....+-.|+ ..+.++.|+.... |+++ +.|..+++|.-.. ++....-+.....-
T Consensus 6 ~~aS~g--d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 6 HVASTG--DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred eeeccC--CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 455544 578899987766555554343 3489999987654 4444 5678899996322 22211111112234
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
.|++......++++|+..+.++|||++...+.+.+++|...|+++.++....+||+++..|.|.|..+.+++....+...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 45555556689999999999999999988888899999999999999999999999999999999999998776665532
Q ss_pred CCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEE-eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 016187 233 PYHTEGLTCLTISADSTL-ALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~-l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~ 309 (394)
....++-+.++|..++ |.+++.+|.+.+||+....++.. ...|..+...|+|+|... +|++.+.|.+|.+||++.
T Consensus 163 --sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 163 --SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred --CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 1234678999997764 55688999999999988776655 456999999999999765 688999999999999987
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecccCceeEEEEccCC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~ 373 (394)
...........+.+.++|.++|.+|++|...|.|..||++.. ..+..+..|...|++|+|-|..
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 665555667778999999999999999999999999999865 4688899999999999998754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=188.54 Aligned_cols=243 Identities=17% Similarity=0.276 Sum_probs=196.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCeEEEEECC--CCCeEEEEeCCCcEEEEcC
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTP--DGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~ 220 (394)
..|.+.|..+...--|+.|++++.|++|+|+.++.. +.+..+.||.++|..++|.. -|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 346666666666666889999999999999998653 56778999999999999964 7999999999999999997
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC-c--EEEEeccCCCCEEEEEECCC---C--
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG-K--VVSSLVSHTDSIECIGFSRS---S-- 290 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~-~--~~~~~~~h~~~i~~v~~~~~---~-- 290 (394)
..+ .......+..|...+++++|.|. |-.|++++.||.|.+++.++. . .-+....|.-.++++.|.|. +
T Consensus 88 ~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 88 ENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 766 33344445668889999999996 468899999999999988754 1 12234679999999999986 3
Q ss_pred ---------CeEEEEeCCCcEEEEeCCCC---CcceeccCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEECCCC--e
Q 016187 291 ---------PWAATGSMDQKLIIWDLQHS---LPRSTCDHEDGVTCLMWLGTS----KYVVTGCVDGKVRVWDSLSG--D 352 (394)
Q Consensus 291 ---------~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~----~~l~sg~~dg~i~iwd~~~~--~ 352 (394)
+.|++|+.|..|+||+.... ......+|.+-|..++|.|.- .++++++.||+|.||-.... .
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 45999999999999998763 334466899999999999974 58999999999999975421 1
Q ss_pred -EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 353 -CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 353 -~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
....++.....++.+.|+..|+.|+.++.|+.|.+|.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445667899999999999999999999999997
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=185.67 Aligned_cols=266 Identities=23% Similarity=0.344 Sum_probs=197.6
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEE
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMW 176 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw 176 (394)
-.+|.+-|.++.|.+-|+++|||+.|++|+|||... +. +....+.|.+.|..+.|.+. |+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357999999999999999999999999999999643 33 44567889999999999764 7899999999999999
Q ss_pred eCCcc---------ceeeeecccCcCeEEEEECC--CCCeEEEEeCCCcEEEEcCCCCceEEEE------c----CCCCc
Q 016187 177 NADRA---------AYLNMFSGHGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGENIHVI------R----GHPYH 235 (394)
Q Consensus 177 ~~~~~---------~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~----~~~~~ 235 (394)
.-... .....+....+.|+.+.|.| -|-.||+++.||.||||+....-.+... . ....+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 12344556678999999999 5778999999999999986543322211 1 11123
Q ss_pred ccCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----cEEEEeccCCCCEEEEEECCCC----CeEEEEeCC
Q 016187 236 TEGLTCLTISAD---STLALSGSKD-----GSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSS----PWAATGSMD 299 (394)
Q Consensus 236 ~~~i~~~~~~~~---~~~l~~g~~d-----g~i~i~d~~~~----~~~~~~~~h~~~i~~v~~~~~~----~~l~s~s~d 299 (394)
..+..|+.|+|. ..++++|+.+ +.++||....+ ..+.++..|.++|++++|.|+- .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 456788999874 4577888766 47888865432 3456778999999999999973 368999999
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
| |+||.++...... .+..+. .|+. -+. ..-+.+..|.+|++.|+.+.|+-.|..|+|.
T Consensus 249 g-v~I~~v~~~~s~i---~~ee~~----~~~~--------~~~------l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI---EEEEVL----APDL--------MTD------LPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred c-EEEEEEeeccchh---hhhccc----CCCC--------ccc------cceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 9 9999986432111 011110 1111 011 1234567789999999999999999999999
Q ss_pred eCCCcEEEEec
Q 016187 380 SLDGTARVFEI 390 (394)
Q Consensus 380 s~dg~i~iw~~ 390 (394)
|+||.||+|+.
T Consensus 307 GdDG~VRLWka 317 (361)
T KOG2445|consen 307 GDDGCVRLWKA 317 (361)
T ss_pred CCCceeeehhh
Confidence 99999999974
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=203.11 Aligned_cols=241 Identities=20% Similarity=0.306 Sum_probs=189.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE------------eecCcccCEEEEEEcCCC-CEEEEEeCCCc
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------EIQGHKDSVSSLAFSMDG-QLLASGGLDGL 130 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~------------~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~ 130 (394)
...|++++|+|++..+|+. ++...++|+|-...++.. .-+||...++|.+|+|+. +.++|++.||+
T Consensus 214 ~h~i~sl~ys~Tg~~iLvv-sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVV-SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccccceeeecCCCCeEEEE-ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 4579999999987766543 455778888865444332 236899999999999976 57889999999
Q ss_pred EEEEeCCCCceE-EEEe-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCc--CeEEEEE
Q 016187 131 VQIWDPSSGNLK-CTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGS--SVTCGDF 199 (394)
Q Consensus 131 i~vwd~~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~--~v~~~~~ 199 (394)
+|+|++...+.. ..++ +..-+++.++|+|+++.+|+|..||.|.+|+.... ...+.-.+|.. .|+|+.|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 999999876532 2222 22236889999999999999999999999997542 22334456765 8999999
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEE
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKVVS 272 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~ 272 (394)
+++|++|++-+.|.++++||++..+ ++....+.+ ...+-+.++|+|+.+++++|.. .|+|.+||..+-..+.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 9999999999999999999998754 333333322 2234567889999999999864 5789999999988888
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
++.-....|..+.|+|.-..+..|+.||++++|-
T Consensus 452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 8877788899999999988888899999999864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=205.95 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=215.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.|+.++|-|++..++..+ +.++.+||.+.|....+++||++.|+|++|+.||+++|+|+.|..|.+|...-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 799999999988877654 478999999999999999999999999999999999999999999999985432222 1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
..|.+.|.++.|+|-.+.|++++- +..-+|........+. .....+.+++|..||++|+.|-.+|+|.+-+-. ++.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 248889999999999999999876 3466788765543321 124567788999999999999999999988643 333
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIW 305 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iw 305 (394)
...+.......++|.+++|+|.... +. ...++......++.++
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~----G~---------------------------------~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGE----GR---------------------------------NDILAVADWGQTLSFY 208 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCC----Cc---------------------------------cceEEEEeccceeEEE
Confidence 3333322234556777777764330 00 1235555556666666
Q ss_pred eCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 306 DLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 306 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
.+...........+....|+.+.++|.|++.|+.|+.+++| .+.|..+.++......|+.++..|++++++.|+.||+|
T Consensus 209 ~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 209 QLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred EecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 66554443333334456799999999999999999999999 57788888888788899999999999999999999999
Q ss_pred EEEecc
Q 016187 386 RVFEIA 391 (394)
Q Consensus 386 ~iw~~~ 391 (394)
.-|++.
T Consensus 288 ACyNl~ 293 (1081)
T KOG1538|consen 288 ACYNLI 293 (1081)
T ss_pred ehhhhH
Confidence 988763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-23 Score=191.75 Aligned_cols=332 Identities=32% Similarity=0.594 Sum_probs=264.9
Q ss_pred ceeeeeccC-CcEEEEEE-cCCCCcEEEE-ecCCCeEEEEEcCC-CeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCc
Q 016187 56 STHIFSGHS-DEVYSVAC-SPTDATLVAT-GGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL 130 (394)
Q Consensus 56 ~~~~~~~h~-~~v~~~~~-~p~~~~~las-g~~d~~v~~w~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~ 130 (394)
....+.++. ..+..+.+ ++....+++. +..|+.+++|+... ......+..|...|..++|+|++.++++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 344455533 36777777 7755534444 44499999999988 7888889999999999999999999988885 999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+++|+...+.....+.+|...+..++|+|++. .+++++.|+.+++|+...+..+. .+.+|.... ...|+|++..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888888888999999999999998 55566999999999988777777 688888775 4489999989999
Q ss_pred EeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEE
Q 016187 209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIG 285 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~ 285 (394)
++.|+.+++|+...... +..+ ..|...+.++.+.|++..+++++.|+.+++|++.+........ .|...+..+.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 99999999999987665 4443 2356789999999988888889999999999998887766665 7887899999
Q ss_pred ECCCCCeEEEE-eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 286 FSRSSPWAATG-SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT-GCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 286 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+.+++..++.+ ..|+.+.+|++..............+..+.+.+ ...++. +..++.+.+|+.........+..+...
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc
Confidence 94332455555 688999999987765222222222278888888 544444 688999999999998888777765478
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+....+.+++.++++++.++.+++|++..
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 89999999999999999999999998753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=215.92 Aligned_cols=236 Identities=20% Similarity=0.328 Sum_probs=197.8
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCC---CeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~---~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
+..|.|+.-..++|||++..|.|.+||+.. .+++..|..|+..|+++.|++.. .+|++||.||+|++||+...+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 445677766788999999999999999987 56667889999999999999865 68899999999999999998888
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.++.+..+.|+.|+|+|. +..++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+||||+.|+.|+|||+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 888888899999999995 568899999999999999864 567788999999999999999999999999999999999
Q ss_pred CCCce--EEEEcCCCCcccCeEEEEEcCCCCEE-EEEe--CCCcEEEEECCCCc-EEEEeccCCCCEEEEEECC-CCCeE
Q 016187 221 KSGEN--IHVIRGHPYHTEGLTCLTISADSTLA-LSGS--KDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSR-SSPWA 293 (394)
Q Consensus 221 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~--~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~-~~~~l 293 (394)
.+++. +.++. ...++.++.|-|+..+. ++++ .|..|+|||++..- +..++..|++.++.++|.. +...+
T Consensus 250 t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 250 TDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred cCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 76543 33333 24578999999987644 4443 58899999998654 5677889999999999976 45578
Q ss_pred EEEeCCCcEEEEe
Q 016187 294 ATGSMDQKLIIWD 306 (394)
Q Consensus 294 ~s~s~dg~i~iwd 306 (394)
.+++.||++..-.
T Consensus 326 ~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 326 WSCSKDGTVLQHL 338 (839)
T ss_pred EeecCccHHHHhh
Confidence 8899998876533
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-23 Score=190.81 Aligned_cols=329 Identities=32% Similarity=0.610 Sum_probs=260.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-eeEeecCcc-cCEEEEEE-cCCCC-EEEEEeC-CCcEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ 132 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-~~~~~~~h~-~~V~~v~~-s~~g~-~l~t~s~-d~~i~ 132 (394)
..+.+|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.++
T Consensus 59 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 367789999999999985 5567778899999999998876 666676644 37888888 88887 5555444 99999
Q ss_pred EEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-eEEEE
Q 016187 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG 209 (394)
Q Consensus 133 vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 209 (394)
+|+... ......+..|...|..++|+|++..+++++. ++.+++|+......+..+.+|...+.+++|+|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999988 7777888899999999999999998888886 99999999998888888889999999999999998 55666
Q ss_pred eCCCcEEEEcCCCCceEE-EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEEC
Q 016187 210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFS 287 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~ 287 (394)
+.|+.|++||...+.... .+..+ .... ...++|++.++++++.|+.+++|++..... +..+..|...+.++.|+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGH---SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCC---Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 999999999988776666 34443 3332 227999998899999999999999987664 44446788999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCccee---ccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecccCc
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRST---CDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
|++..+++++.|+.+++|++........ ..|...+..+.|.+++..++.+ ..|+.+++|+...............
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 372 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN- 372 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-
Confidence 9888888899999999998876543333 2566678888883232455555 6889999999887773333333222
Q ss_pred eeEEEEccCCCEEEE-EeCCCcEEEEeccCC
Q 016187 364 IQAISVSAHQDFLVS-VSLDGTARVFEIADF 393 (394)
Q Consensus 364 v~~l~~~~~~~~l~s-~s~dg~i~iw~~~~~ 393 (394)
+..+.+++ ...+++ +..++.+.+|+....
T Consensus 373 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 373 VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 88899988 544554 789999999997653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=179.85 Aligned_cols=248 Identities=21% Similarity=0.336 Sum_probs=195.2
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~ 132 (394)
+-.+|.+-|.++.|.+. ++.+||++.|.+++|||.+.. .+....+.|.+.|..|.|.+ -|+.+|+++.|++++
T Consensus 8 i~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34689999999999984 678999999999999996432 34456789999999999975 489999999999999
Q ss_pred EEeCCC------C---ceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc------eeeeec-------
Q 016187 133 IWDPSS------G---NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA------YLNMFS------- 188 (394)
Q Consensus 133 vwd~~~------~---~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~------~~~~~~------- 188 (394)
||.-.. + ....++......|+.++|.|. |..+++++.||.+|||+....- +...++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997411 1 234567778889999999996 6689999999999999864321 122222
Q ss_pred ccCcCeEEEEECCC---CCeEEEEeCC-----CcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC----CEEEEEe
Q 016187 189 GHGSSVTCGDFTPD---GKTICTGSDD-----ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS----TLALSGS 255 (394)
Q Consensus 189 ~h~~~v~~~~~~~~---~~~l~s~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~g~ 255 (394)
.+..+..|+.|+|. ..+||.|+.+ +.++||....+. ....+...+-+..+|+.++|.|.- .++++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 46677889999973 4578888766 478899765443 444444444578899999999963 5889999
Q ss_pred CCCcEEEEECCCC--------------------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 256 KDGSVHMVNITTG--------------------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 256 ~dg~i~i~d~~~~--------------------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
.|| |+||.++.. +.+..+..|...|..+.|+-.|..|++.+.||.|++|...
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999 999998731 2345677899999999999999999999999999999753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=192.37 Aligned_cols=283 Identities=18% Similarity=0.268 Sum_probs=228.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
..+|.+|||+.+.+.||.+-.+|.|.+|++..+-.. ..+.+ ....|..++|.+ +..|++.+.+|.|.-||+.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 567999999999999999999999999999875332 33444 456899999994 556889999999999999999999
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
..+..-++.|++++.+|.+..++.|+.||.+..++...+........ .-....+.+++|+|++..+++|+.||.|++||
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec-ccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99998999999999999999999999999888887766554333221 12356799999999999999999999999999
Q ss_pred CCCCcEEEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCEEE
Q 016187 265 ITTGKVVSSLVS--------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 265 ~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
..++..+..... ...-|.++.|-.++ .+++|..-|+|++||..... ......|...|.|++-.+++.+++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 999876652111 12346777777544 68999999999999987653 344556888999999999999999
Q ss_pred EEeCCCeEEEEECCCCeE----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 336 TGCVDGKVRVWDSLSGDC----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
+++.|+.|..+...+.+. ......|...|.+++..++ .+++||.|.++.+=....||
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 999999999998665533 2334578888999998875 89999999999887665543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=199.92 Aligned_cols=282 Identities=15% Similarity=0.241 Sum_probs=208.5
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEEeCCCCce------EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 111 SSLAFSM---DGQLLASGGLDGLVQIWDPSSGNL------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 111 ~~v~~s~---~g~~l~t~s~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
.+..|++ ...+|+.+..||.|.++|...... +.....|...|..+.|.|-...|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3466764 235799999999999999865432 2445678899999999996678999999999999999988
Q ss_pred ceeee--ecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCce--------------------EE----EEcCCCC
Q 016187 182 AYLNM--FSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN--------------------IH----VIRGHPY 234 (394)
Q Consensus 182 ~~~~~--~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~--------------------~~----~~~~~~~ 234 (394)
.+... +.||...|.+++|.|. ...|++|+.||.|.|||++-... .. .+....+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 87765 8899999999999995 45789999999999999874320 00 0000112
Q ss_pred cccCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEE--------eccC---CCCEEEEEECCCCCeEEEEeCC
Q 016187 235 HTEGLTC---LTISADSTLALSGSK-DGSVHMVNITTGKVVSS--------LVSH---TDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 235 ~~~~i~~---~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~--------~~~h---~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+...|.+ +.+..|...|++++. |+.|++||+++...... +..| .-.+.++.....|.+|...+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 2233433 555667778888776 99999999987653322 2223 2346677778888998888889
Q ss_pred CcEEEEeCCCCCcceeccCCCC-----EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCC
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDG-----VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~ 373 (394)
+.|..|++..........+... -..-..+|++.+|++|+.|...++|.+.+.+. ...+.||.-.|++++|.|..
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 9999999976533322211111 11223579999999999999999999877654 55688999999999998743
Q ss_pred -CEEEEEeCCCcEEEEeccC
Q 016187 374 -DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 374 -~~l~s~s~dg~i~iw~~~~ 392 (394)
.-++++++|.+++||++.+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCCceeeccCcceEEEeccC
Confidence 3477789999999999854
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=188.57 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=189.9
Q ss_pred ceeeeeccCCcEEEEEEcCC-CCcEEEEecCCCeEEEEEcCC----------------CeeeEeecCcccCEEEEEEcCC
Q 016187 56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFSMD 118 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~-~~~~lasg~~d~~v~~w~~~~----------------~~~~~~~~~h~~~V~~v~~s~~ 118 (394)
......+|.+.++.+..+|- +..+.|+-+..|.|+||++.. .+.+.++.+|...-++++|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 34445678999999988875 456889999999999999742 2456778899999999999993
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCceEE---EEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcccee--eeecccC
Q 016187 119 G-QLLASGGLDGLVQIWDPSSGNLKC---TLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYL--NMFSGHG 191 (394)
Q Consensus 119 g-~~l~t~s~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~ 191 (394)
. ..|+||..-+.|++|...+|.... .+.+|...|..++|+|.. ..+++||.|++|+|||++.++.. ...+.|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 3 357889888999999999887653 456799999999999975 48899999999999999877322 2237899
Q ss_pred cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc---eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 016187 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE---NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~ 267 (394)
+.|+-+.|+..-.+||+|+.||+++|||++.-+ .+..++ +|..+|+++.|+|. ...+++++.|..|.+||+.-
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999988899999999999999998643 344444 57889999999994 57888899999999999853
Q ss_pred CcE--------E--------EEeccC--CCCEEEEEECCCCC-eEEEEeCCCc
Q 016187 268 GKV--------V--------SSLVSH--TDSIECIGFSRSSP-WAATGSMDQK 301 (394)
Q Consensus 268 ~~~--------~--------~~~~~h--~~~i~~v~~~~~~~-~l~s~s~dg~ 301 (394)
..- . +-+..| ...+..+.|++.-+ ++++.+.||-
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 210 0 112224 33577788888754 6777777773
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=189.33 Aligned_cols=289 Identities=20% Similarity=0.238 Sum_probs=219.6
Q ss_pred eeccCCcEEEEEEcCCCC-cEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 016187 60 FSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQI 133 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~-~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~v 133 (394)
..-|...|++++|||+.. .++|.|..-|.|-+||+.+. +-+..+..|..+|.+|.|+|.. ..+++.|+||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 445788999999999877 78999999999999999422 2334567899999999999965 68889999999999
Q ss_pred EeCCCCceE--EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECCC-CCeEEEE
Q 016187 134 WDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPD-GKTICTG 209 (394)
Q Consensus 134 wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~-~~~l~s~ 209 (394)
-|++.+... ..+......+..+.|+.+...++.+..=|.+.+||++.... ...+.-|...|..++++|. -.+|||+
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 999876432 23332444567778888888888888878999999987654 4556678889999999995 4578999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
+.|++++|||++.-.. .. +| +-....|...|.++.|||.
T Consensus 342 s~D~T~kIWD~R~l~~------K~-----------sp------------------------~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRG------KA-----------SP------------------------FLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred ccCcceeeeehhhhcC------CC-----------Cc------------------------ceecccccceeeeeEEcCC
Confidence 9999999999864221 00 01 1122358889999999999
Q ss_pred CCeEEEEeCCCcEEEEeCC----CCCcceeccCCCC------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 290 SPWAATGSMDQKLIIWDLQ----HSLPRSTCDHEDG------VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 290 ~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~------v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
+..|++.+.|..|+|||.. ...+...+.|... ....+|.|+..++++|-.-..|-|+|...++.+.++..
T Consensus 381 ~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 381 GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred CCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 8889999999999999973 2233333444322 23468999999999999999999999998888877665
Q ss_pred ccC-ceeE-EEEccCCCEEEEEe-CCCcEEEEe
Q 016187 360 HRD-AIQA-ISVSAHQDFLVSVS-LDGTARVFE 389 (394)
Q Consensus 360 h~~-~v~~-l~~~~~~~~l~s~s-~dg~i~iw~ 389 (394)
-.. .|.+ ..|+|-+..+++|| .-|.|.+|-
T Consensus 461 P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccccccceeecccccceeccCCccceEEEEe
Confidence 433 5655 48999888666665 568888884
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=196.59 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=129.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--e---EeecCc-ccCEEEEEEcCCCCEEEEEeCCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A---SEIQGH-KDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~---~~~~~h-~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
-..++-+|.+.|+.+.|+|-...+||||+.|..|+||.+..+-- + ...-+| .-.|.++.|+|...-|+..+.-|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 35567899999999999998778999999999999999974321 1 122334 45688999999765555555679
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeecccCcC-eEEEEECCCCCeEE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSS-VTCGDFTPDGKTIC 207 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~-v~~~~~~~~~~~l~ 207 (394)
+++|||+.+++....+.+|.+.|.++.|+.+|.+|++.+.|.+|+|||.+. +..++...+|.+. =..+.|.-+-..|+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLI 230 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhh
Confidence 999999999999999999999999999999999999999999999999875 4667777888653 12455654444565
Q ss_pred EEeCC----CcEEEEcCC
Q 016187 208 TGSDD----ATLRVWNPK 221 (394)
Q Consensus 208 s~~~d----g~i~vwd~~ 221 (394)
+.+.+ ..|++||++
T Consensus 231 sTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 231 STGFTTKRIREVRAYDTR 248 (1012)
T ss_pred hcccchhhheeeeeeecc
Confidence 55443 457788765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=178.69 Aligned_cols=290 Identities=19% Similarity=0.279 Sum_probs=213.0
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
|...+.++.... ..|+.|++. +.+||.|..||.+.+||+.+....+.+.+|..+|.+++||+||++|+|+|.|..|+
T Consensus 14 PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 14 PEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred hHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 334444554222 789999995 67899999999999999999988889999999999999999999999999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeee---ccc-CcCeEEEEECCCCCeEE
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF---SGH-GSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~---~~h-~~~v~~~~~~~~~~~l~ 207 (394)
+||+..|..++.+.. ..+|..+.|+|... ..++.-.+..-.+-++...+....- .+. .....+..|.+.|++++
T Consensus 91 lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999999998877764 57899999999654 3444444444445554432211110 011 11223446899999999
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------cE--EEEecc--
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-------KV--VSSLVS-- 276 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-------~~--~~~~~~-- 276 (394)
+|...|.+.++|..+-+++..++... ...|..+.++..|.+++..+.|..|+.++++.- .+ .++++.
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred EecCcceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 99999999999999988887766432 356889999999999999999999999997621 11 111111
Q ss_pred CCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCccee-ccCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 277 HTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRST-CDHE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..-+=.++.|+.+|.|++.++ ....+.||.-..+...+. .+.. .....+.|+|-...+++- ..|.|++|...
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 112234678999999987665 456799998766544333 2322 346678899988888877 78999999753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=182.04 Aligned_cols=304 Identities=23% Similarity=0.371 Sum_probs=215.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..+|+.+.|++.....+||||.|..|++|.++.. +....|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4589999999977669999999999999997543 3456788999999999999999999999999999999
Q ss_pred eCC--------C--------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 135 DPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 135 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
... + ......+.+|...+..++|+|++.++++++.|+.+++||+..+.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123456678899999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-----C---CC--------Cccc----CeEEEEEcCCCCEEEEEeC--
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----G---HP--------YHTE----GLTCLTISADSTLALSGSK-- 256 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~---~~--------~~~~----~i~~~~~~~~~~~l~~g~~-- 256 (394)
|.|-++++++-+.|...+.+.....+.++... . +. +|.+ -...++|+|+|.++++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999999988777765544332221 0 00 1111 1334678899998887532
Q ss_pred --CCcE-----EEEECCC-CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 257 --DGSV-----HMVNITT-GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 257 --dg~i-----~i~d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
.+.+ ++++-.. .++...+.....+...+.|+| ..|.++..... .. +.-.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p--------------Vy~elrp~~~~------~~---~~~l 309 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP--------------VYYELRPLSSE------KF---LFVL 309 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee--------------eEEEecccccc------cc---cccc
Confidence 1111 1221110 112222222233333333332 12222211100 00 1112
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|....++. .....|++||..+.+.+.... -|-..|+.++|++||.+++..|.||..-+-.++
T Consensus 310 pyrlvfai-At~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 310 PYRLVFAI-ATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccceEEEE-eecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 33333444 446689999998887776553 577889999999999999999999987765544
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=182.21 Aligned_cols=233 Identities=23% Similarity=0.381 Sum_probs=183.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceE---------------------EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEE
Q 016187 118 DGQLLASGGLDGLVQIWDPSSGNLK---------------------CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWM 175 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~i 175 (394)
-|+++|.|..|..|.|||+.-...+ ....+|+..|..++|+.. .++|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3679999999999999997421100 012357777778888875 458999999999999
Q ss_pred EeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCC-CEEE
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADS-TLAL 252 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~ 252 (394)
||+.++++...+..|...|.+++|+| ....|++|+.|++|++.|.+...+. ..++ ....|-.++|.|.. ..++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----eccceEEEEecCCCceeEE
Confidence 99999999999999999999999999 5678999999999999999853221 1222 23457788998865 4667
Q ss_pred EEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCcceeccCCC---CEEEEEE
Q 016187 253 SGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMW 327 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~ 327 (394)
++..||+++-+|+++. +++.++++|.++|.++.+++.-+ ++++++.|+.+++|++....+.....|.. ...|.++
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence 7889999999999975 89999999999999999998754 68899999999999987665544444432 3456666
Q ss_pred eCCC-CEEEEEeCCCeEEEEECCCCeEE
Q 016187 328 LGTS-KYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 328 ~~~~-~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.|+- .+++.|+..+.++|||+.+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 6654 46778888889999998776554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=177.71 Aligned_cols=288 Identities=24% Similarity=0.412 Sum_probs=218.0
Q ss_pred eeeccCCcEEEEEEcC----CCCcEEEEecCCCeEEEEEcCCCeeeEee-----cCcccCEEEEEEcCCC----CEEEEE
Q 016187 59 IFSGHSDEVYSVACSP----TDATLVATGGGDDKGFFWRINQGDWASEI-----QGHKDSVSSLAFSMDG----QLLASG 125 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p----~~~~~lasg~~d~~v~~w~~~~~~~~~~~-----~~h~~~V~~v~~s~~g----~~l~t~ 125 (394)
...+|+.+++.++|.+ +....+||.|+ .++.+|+....-.++.+ ..|.+.-+.++|+-+- .+||.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 34678888776 56778886554333332 2377888999998643 478999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTP 201 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~ 201 (394)
+.-|.|+|.|+.+++....+.+|...|+.+.++|.. ++++++|.|.+|++|++++..++..+ .||.+.|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999999999999999999999999999976 58899999999999999999888765 57999999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEc-------------------------CCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIR-------------------------GHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+|.+++|++.|.+|++|++...+-...++ ....|...|-|+.|- |.++++-+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99999999999999999987432111111 011233334444333 568889888
Q ss_pred CCcEEEEECCC-C-------------cEEEEeccCCCCEEEEE--ECCCCCeEEEEeCCCcEEEEeCCCCCcce--ecc-
Q 016187 257 DGSVHMVNITT-G-------------KVVSSLVSHTDSIECIG--FSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCD- 317 (394)
Q Consensus 257 dg~i~i~d~~~-~-------------~~~~~~~~h~~~i~~v~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~- 317 (394)
++.|..|.... + ..+..+......|.-+. |.|-+++||.|...|++.+||++...+.. ...
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 99999998721 1 12233333344455544 56778899999999999999998765432 112
Q ss_pred --CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 318 --HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 318 --~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
....|...+|+.++..|+..+.|+.|--||..
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 23458889999999999999999999999853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=171.82 Aligned_cols=272 Identities=20% Similarity=0.324 Sum_probs=207.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eEEEEe-cCCCCEEEEEEc-------CCCCEEEEecC
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------------LKCTLE-GPGGGVEWVSWH-------PRGHIVLAGSE 169 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~s~ 169 (394)
...+.|||||..|++-+.|..+++|++...- ....+. .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3467899999999999999999999875211 011111 123456666665 56779999999
Q ss_pred CCeEEEEeCCccceeeeecc--cCcC---eEEEEECCCCCeEEEEeCCCcEEEEcC-CCCceEEEE----cCCCCcccCe
Q 016187 170 DSTVWMWNADRAAYLNMFSG--HGSS---VTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVI----RGHPYHTEGL 239 (394)
Q Consensus 170 d~~i~iw~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~----~~~~~~~~~i 239 (394)
+.-|.+||.-+++....+.+ |... ..+++|+|||.+|++|. ...||++|+ +.|...... ++......-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999998887766554 3333 35899999999998875 688999999 555432111 1111224457
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc-ce-e
Q 016187 240 TCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP-RS-T 315 (394)
Q Consensus 240 ~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~-~~-~ 315 (394)
.|++++|.. +.++.|+...++-|+.-..+.++..+-+|.+.|+.+.|.++|..|.+|+. |..|..||++.... .. .
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 899999955 58999999999999988888999999999999999999999999999875 77899999986421 11 1
Q ss_pred ccCCCCE---EEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 316 CDHEDGV---TCLMWLGTSKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 316 ~~~~~~v---~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
..|.... .-....|++++|++|+.||.|++||+.. +..+..+..|...|+.++++|--+++|+++..
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 2232211 1233458899999999999999999988 67688888899999999999999999988865
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=173.95 Aligned_cols=285 Identities=20% Similarity=0.301 Sum_probs=218.0
Q ss_pred ecCcccCEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCc---eEEEEe--cCCCCEEEEEEcCC----CCEEEEec
Q 016187 103 IQGHKDSVSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGN---LKCTLE--GPGGGVEWVSWHPR----GHIVLAGS 168 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~-----~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~s 168 (394)
...|+.+|..++|.+ +-+.+||++.+ .+.+|.....- .+..+. .+.+....++|.-+ +.++++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 467899999999984 23467777654 68888765432 222322 35567777888754 34788888
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.-|.|++.|+.++++...+.+|+..|+.+.|.|+. ++++++|.|.+||+|++++..++..+.+...|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999964 78899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE----------------------------EEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 248 STLALSGSKDGSVHMVNITTGKVV----------------------------SSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~----------------------------~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.++++++.|.+|++|++...+.. .+-.-|...|.|+.|- +.++++=|-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 999999999999999999732110 0112366666666665 4689999999
Q ss_pred CcEEEEeCCCCC-------cc----eec----cCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCeEEE--Eee--
Q 016187 300 QKLIIWDLQHSL-------PR----STC----DHEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFS-- 358 (394)
Q Consensus 300 g~i~iwd~~~~~-------~~----~~~----~~~~~v~~~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~-- 358 (394)
+.|..|...+.. +. ... .....+.-+.| .+-+++||.|...|+|++||+....... ++.
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999862110 00 000 01122334443 4557899999999999999998765532 232
Q ss_pred cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.-...|...+|+.|+..|+.+++|++|--||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22456899999999999999999999999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=170.54 Aligned_cols=246 Identities=27% Similarity=0.408 Sum_probs=199.0
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC---CCEEEEEeCCCcEEEEeC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~---g~~l~t~s~d~~i~vwd~ 136 (394)
-.+|+-.|..+.|-|-+..+|.|++-|.+++|||.++.+....+. -.+.|++-++||= ..++|+|..+-+|++.|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 357888999999999888899999999999999999877666665 4677888889884 347888889999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcc-cee--------------eeecccCcCeEEEEEC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYL--------------NMFSGHGSSVTCGDFT 200 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~-~~~--------------~~~~~h~~~v~~~~~~ 200 (394)
.+|...+++.+|.+.|.++.|+|... .|++|+.||.|++||++.. .+. +.-..|.+.|..++|.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 99999999999999999999999876 6789999999999998753 221 2234678889999999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
.++.++++++.|..+++|+..+|+....-.+...+.. .-..+. +.+...++---.++++.++++-++..+..+..|
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 9999999999999999999988864321111111111 111122 334444444455699999999999999999999
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
-..|.|.++-|+-+.+.+++.|+.+..|-.
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999999975
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=170.19 Aligned_cols=301 Identities=18% Similarity=0.258 Sum_probs=206.7
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.|+++..++++|.+.|+++.|--+ . +|.+|..-|.+++|.+.+......++ .|...|+.+.--|+ ..|.|-+.|..
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~-~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN-E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCCeeEeccccchheehhhccc-h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 367788899999999999999754 3 36689999999999999988888888 57889999999887 57789999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC-eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
+.+|++.-+..... |.=.++++.|.+.. +...+... .+..|+-+.... .| .--+
T Consensus 79 L~lw~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-----~h---------------~~D~ 133 (323)
T KOG0322|consen 79 LILWTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-----TH---------------KQDG 133 (323)
T ss_pred EEEEEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccch-----hh---------------hhcc
Confidence 99999876554322 22223334443321 11111111 000111000000 00 0001
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CC--CEEEEEeCCCcEEEEECCCC----------cEEEEecc
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DS--TLALSGSKDGSVHMVNITTG----------KVVSSLVS 276 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~ 276 (394)
+.--.+++=|-... ...+.++|..+.. ++ -++++|.++|.+.+||+.++ +.......
T Consensus 134 g~~tqv~i~dd~~~----------~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 134 GDTTQVQIADDSER----------SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred CccceeEccCchhc----------cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 11111222221100 0122344444222 12 25667788888888888876 33334456
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----c-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP----R-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
|..++.++.+.+....=++|+.+..+..|++..... + .....+.+|..+..-||++.+||++.|++||||+.++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 899999999998766677888888999999865421 1 12223456788889999999999999999999999999
Q ss_pred eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 352 DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
..+..++.|++.|++++|+|+.+.+|++|.|++|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=204.80 Aligned_cols=279 Identities=18% Similarity=0.357 Sum_probs=213.5
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEeCC--CCc----eEEEEecCCCCEEEEEEcCCCCE----EEEecCC
Q 016187 112 SLAFSMDGQ-LLASGG----------LDGLVQIWDPS--SGN----LKCTLEGPGGGVEWVSWHPRGHI----VLAGSED 170 (394)
Q Consensus 112 ~v~~s~~g~-~l~t~s----------~d~~i~vwd~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~d 170 (394)
.++|||.+. +|++|. .+.++-||.+. +.. ....+ ......+.++|.+.+.. ++.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888875 444442 34455565443 222 11111 12346788999987654 8888899
Q ss_pred CeEEEEeCCcc------ceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 171 STVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 171 ~~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
|.|.+|+.... ..+..+..|.+.|..+.|++.+ +.||+|+.||.|.|||+...+...... .....+.|.+++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEec
Confidence 99999997642 3456678899999999999954 599999999999999998755443332 223456799999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCC-eEEEEeCCC---cEEEEeCCCCC-cc-e
Q 016187 244 ISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSP-WAATGSMDQ---KLIIWDLQHSL-PR-S 314 (394)
Q Consensus 244 ~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~-~l~s~s~dg---~i~iwd~~~~~-~~-~ 314 (394)
|+.. .++|++++.+|+..|||++..+.+-.+..+.. .+..++|+|+.. .+++++.|. .|.+||++... +. .
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9875 56778889999999999999988877766544 477899999864 466665554 58999997642 22 2
Q ss_pred eccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEeCCCcEEEEeccC
Q 016187 315 TCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~~ 392 (394)
...|..+|.++.|.+.+ .+|++++.|++|.+|+..+++.+..+....+.+..+.|.|... .|+.++-||.|-||.+..
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 34799999999999876 8999999999999999999999999998889999999999776 788889999999998753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-24 Score=182.98 Aligned_cols=210 Identities=21% Similarity=0.362 Sum_probs=170.4
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+|++.|.+++|+..-.++|||||.|.+|++||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 3799999999999877789999999999999999999999999999999999999986 478999999999999998843
Q ss_pred ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLR 216 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~ 216 (394)
......-...+.|..++|.|.. +.++++..||+++-+|.+.. +++..+++|.++|.++.+++. -.++++++.|+.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 2222222245679999999975 47788889999999999875 888999999999999999874 45789999999999
Q ss_pred EEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEE
Q 016187 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
+|++..... .....+.+.-....|.++.|+-. .++.|+..+.+++||+.+...+
T Consensus 400 lw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCC-cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999865433 22233333334466777777654 5667888889999999876544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=174.32 Aligned_cols=172 Identities=24% Similarity=0.498 Sum_probs=148.3
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eecCcccCEEEEEEcCCC-CEEEEEeC
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASGGL 127 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~~h~~~V~~v~~s~~g-~~l~t~s~ 127 (394)
....+...+.+|.++-|+|.|||.....|+||..-+.|++|...++.+.. .+.+|+..|..++|||.. ..||+||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 44567888999999999999999655567888888999999999888763 578899999999999965 58999999
Q ss_pred CCcEEEEeCCCCceE--EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---cceeeeecccCcCeEEEEECCC
Q 016187 128 DGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 128 d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~ 202 (394)
|++|+|||+..+... ...+.|.+.|+-++|+..-.+|++|+.||+++|||+++ ++.+..|+.|..+|+++.|+|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 999999999988322 22377889999999999988999999999999999875 5667889999999999999994
Q ss_pred -CCeEEEEeCCCcEEEEcCCCC
Q 016187 203 -GKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 203 -~~~l~s~~~dg~i~vwd~~~~ 223 (394)
...|++++.|.+|.+||+...
T Consensus 359 e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCceEEeccCCCcEEEEEeecc
Confidence 567889999999999998643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-21 Score=178.56 Aligned_cols=285 Identities=20% Similarity=0.318 Sum_probs=213.3
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
|...+++.++||.++++|+|..||.|.+|.-.. .. ....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 455678999999999999999999999996432 11 22345668889999999999999999999999999999988
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc--------ccCeEEEEEcCCCCEEEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALS 253 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~ 253 (394)
+ .+.++.-+++|..+.++||+.+.+....|..|.+-...+......+.+.... ..-.+.+.++|-.+.++-
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 5556667889999999999999999999999999987655443333332111 233567888997777888
Q ss_pred EeCCCcEEEEECCCCcEEEEecc-----------CCCCEEEEEECCCCCeEEEEe--------CCC--cEEEEeCCCCCc
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVS-----------HTDSIECIGFSRSSPWAATGS--------MDQ--KLIIWDLQHSLP 312 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~-----------h~~~i~~v~~~~~~~~l~s~s--------~dg--~i~iwd~~~~~~ 312 (394)
.+..|.|.+||+.+.+.+..+.. +.-.+.+++.+..+.|++|.- .|| .+|+|-......
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 88999999999988776655431 233577888888899999864 233 477886543222
Q ss_pred c------eeccCCCCEEEEEEeC-CCC-EEEEEeCCCeEEEEECCC----------CeEEEEeecccCceeEEEEccCCC
Q 016187 313 R------STCDHEDGVTCLMWLG-TSK-YVVTGCVDGKVRVWDSLS----------GDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 313 ~------~~~~~~~~v~~~~~~~-~~~-~l~sg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
. ....|...+...++.+ ... ..++++.||.++||-... +.|...-..|..++++++|+.||.
T Consensus 443 t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc
Confidence 1 1235776655555543 333 899999999999997621 233333335889999999999995
Q ss_pred EEEEEeCCCcEEEEeccC
Q 016187 375 FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~~ 392 (394)
. +++|.|++|.+||...
T Consensus 523 l-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 523 L-LAVSFDDTITIWDYDT 539 (792)
T ss_pred E-EEEecCCEEEEecCCC
Confidence 4 5688899999999765
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=180.44 Aligned_cols=271 Identities=21% Similarity=0.296 Sum_probs=203.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCC
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~ 179 (394)
..++||++.|+++...|.|.+|++|+.||+|+||.+.+|+++.++.. .+.|.+++|+|.+. .+++++....+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45789999999999999999999999999999999999999888763 45799999999876 23344444446666543
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEE----eCCCcEEEEcCCCCce----EEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTG----SDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
-+..+... +....|+++ ..++.+..|.-...+. +...- .|...|+.+.|+..|.||
T Consensus 473 ~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 473 FGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred ccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeecCCceE
Confidence 33211110 011122222 2356777886542211 11111 256779999999999999
Q ss_pred EEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEE
Q 016187 252 LSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMW 327 (394)
Q Consensus 252 ~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~ 327 (394)
++-..+ ..|.|.++...+....|.-..+.|.++.|+|..++|+.++ ...|+|||+....... .......|..++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 986553 5688888877766555655668899999999999988876 4579999997643322 2333456889999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+|.|.-|+.|+.|+++..+|+.- .+..+++..|...|++|+|++.-++++||+.||++.+|.
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999999999864 466788999999999999999999999999999999985
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=182.81 Aligned_cols=253 Identities=19% Similarity=0.326 Sum_probs=196.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
...+..|.+.|.+++|+|..+ .|++++.|+++++|+++. -+.+.++++|.++|.|+++++.+..+++|+-|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 345678999999999999765 578999999999999832 24677899999999999999999999999999
Q ss_pred CcEEEEeCCCC----------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce--eeeecccCcCeEE
Q 016187 129 GLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTC 196 (394)
Q Consensus 129 ~~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~ 196 (394)
|+|+.|++... .....+.||.+.++.+++|+....|++++.||+++.|+...... ......|. ...+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g-~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG-YPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC-Ccce
Confidence 99999965411 23456789999999999999999999999999999999876554 11112222 3344
Q ss_pred EEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 197 GDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 197 ~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
++|.... ...++...-+.-.+.++...+.+..+.... .....+.-+...|.+.+.+++..|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 5554322 222333333444455555555554443211 11234677888999999999999999999999999999
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.....|...++++++.|++.+|++++.|+.+++|.+....
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999999999999999999999999999999886543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=176.45 Aligned_cols=260 Identities=17% Similarity=0.291 Sum_probs=203.7
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCC--ee--eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQG--DW--ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~--~~--~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
++++.|.......+|+.++|..+++|.-... +. +..+.|. .-.|++......|+++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 7888998755456788889999999985332 22 2233333 3344544445589999999999999999966667
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc-CcCeEEEEECCCCCe-EEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKT-ICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~ 220 (394)
..+++|...|+++.++-...+|++++..|.|.+..+.++.....+... ...|.-+.|+|..+. |.+++.+|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 788999999999999999999999999999999999888766665433 455668899997664 568899999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
......+.+. ..|..+...++|+|.+ .++++-+.|..|.+||.++.+....+. ...+..+++|+++|.+|+.|...
T Consensus 195 ~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 195 QGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred cCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCC
Confidence 7665544332 3466777788999955 577788999999999999776665554 46789999999999999999999
Q ss_pred CcEEEEeCCCCC-cc-eeccCCCCEEEEEEeCCC
Q 016187 300 QKLIIWDLQHSL-PR-STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 300 g~i~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~ 331 (394)
|.|..||++... +. ....|...|++++|-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999998643 32 234688889999998764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=170.87 Aligned_cols=234 Identities=22% Similarity=0.387 Sum_probs=181.6
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-------eeeEeecCcccCEEEEEEcCCC-CEEEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASG 125 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-------~~~~~~~~h~~~V~~v~~s~~g-~~l~t~ 125 (394)
+...-.+.||+++|..++|+|.+.+.|||||.|.+++||.+..+ +.+..|.||...|--|+|+|.- +.|+++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 44556688999999999999998899999999999999998654 4567789999999999999976 678999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCc-CeEEEEECCCCC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGK 204 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 204 (394)
+.|.+|.+|++.+|+.+.++. |.+.|.+++|+.+|.++++.+.|..|++||.++++.+..-.+|.+ ....+.|..+|.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 999999999999999988888 899999999999999999999999999999999998887777754 445667888888
Q ss_pred eEEEEe---CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEE----EEecc
Q 016187 205 TICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVV----SSLVS 276 (394)
Q Consensus 205 ~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~----~~~~~ 276 (394)
.+-||. .+.++-+||...-+....+.... ...+|.-=-+.++.+++ ++|-.|+.|+.|.+....+. .++.
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~- 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS- 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-
Confidence 555543 47889999986544321111111 23455555677777655 56778999999999876532 2222
Q ss_pred CCCCEEEEEECCCC
Q 016187 277 HTDSIECIGFSRSS 290 (394)
Q Consensus 277 h~~~i~~v~~~~~~ 290 (394)
..++=..+.|-|..
T Consensus 308 S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 308 SKEPQRGMGFMPKR 321 (472)
T ss_pred cCCccccccccccc
Confidence 23344455665543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=173.25 Aligned_cols=248 Identities=22% Similarity=0.341 Sum_probs=191.6
Q ss_pred eEEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCcc----ceeeeecccCcCeEEEEECC-CCCeEEEEeCCC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDA 213 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 213 (394)
.....+-+.+.|++++|||..+ ++++|..-|+|-+||+.+. ..+..+..|+.+|.++.|+| +-..+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3344556778999999999754 7889999999999999532 33566788999999999999 556899999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCC-
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSP- 291 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~- 291 (394)
+||+-|++.+..-..+... .....+..+.++.+...++.+..=|...+||+++++. ...+..|...|..|+++|..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999876432221110 1123456677888888888888888999999998654 666777999999999999876
Q ss_pred eEEEEeCCCcEEEEeCCCCCc-----ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCeEEEEeeccc-
Q 016187 292 WAATGSMDQKLIIWDLQHSLP-----RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL----SGDCVRTFSGHR- 361 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~h~- 361 (394)
+|||++.|++++|||++.... .....|...|.++.|+|.+..|++-+.|..|+|||.. .-..+..+. |+
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 589999999999999975422 3346788999999999999899999999999999973 222222222 22
Q ss_pred ---C--ceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 362 ---D--AIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 362 ---~--~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
. .....+|.|+..+++.|-.-..|-||+-
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 1 2345679999999999998888888874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=160.54 Aligned_cols=248 Identities=23% Similarity=0.412 Sum_probs=188.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCC-------CeEEEEEcCCC---------eeeEeec-CcccCEEEEEEcCCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMDG 119 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d-------~~v~~w~~~~~---------~~~~~~~-~h~~~V~~v~~s~~g 119 (394)
..+|..|.++|+.|+-+|.+.++|||.-.+ ..+-||.+... +++..|. .+.+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 455778999999999999999999997542 23578997543 2333444 456789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-EEEEe-----cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCccceeee-eccc
Q 016187 120 QLLASGGLDGLVQIWDPSSGNL-KCTLE-----GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNM-FSGH 190 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h 190 (394)
..|++-. |..|.+|++..+.. ...+. .+....++-+|+| +++.+++ ..|++++.||+++.+.... -.+|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh
Confidence 9998775 88999999987654 33322 2344677788988 5666655 5689999999998765443 3578
Q ss_pred CcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 016187 191 GSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 191 ~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~ 267 (394)
...|..+.|+|+.+ +|++|+.||.||+||++.-+ .+..+. .|.-.+.++.|+|. ..++++|+.|..+.+|...+
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999999999865 57899999999999998654 333333 35667999999994 67889999999999986532
Q ss_pred C-----------------------------cEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCCC
Q 016187 268 G-----------------------------KVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQH 309 (394)
Q Consensus 268 ~-----------------------------~~~~~~~~h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~ 309 (394)
- ..+.++..|.+.|++++|+...+| +|+-|.||++.|=.+..
T Consensus 291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 124456779999999999988776 68889999999866543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=196.29 Aligned_cols=243 Identities=23% Similarity=0.373 Sum_probs=197.9
Q ss_pred CcEEEEEEcCCCCc---EEEEecCCCeEEEEEcCC------CeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 016187 65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQ------GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW 134 (394)
Q Consensus 65 ~~v~~~~~~p~~~~---~lasg~~d~~v~~w~~~~------~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vw 134 (394)
...+.|+|.+.+.. +||.|..||.|-+|+... .+.+.+...|++.|..+.|++... .||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 35678899886555 799999999999999754 234566788999999999999775 99999999999999
Q ss_pred eCCCCceEEEE--ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeecccCc--CeEEEEECCCC-CeEEE
Q 016187 135 DPSSGNLKCTL--EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT 208 (394)
Q Consensus 135 d~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~-~~l~s 208 (394)
|+++.+.-.+. ....+.|.+++|+.. .++|++++.+|...|||++..+.+-.+..+.. .+..++|+|+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99876544433 224578999999986 46789999999999999998877766665544 46789999975 45666
Q ss_pred EeCCC---cEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 209 GSDDA---TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 209 ~~~dg---~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
++.|. .|.+||+|.-. .++.++ .|..+|.++.|++.+ .++++++.|+.|.+|+..+++.+..+....+++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 66553 58999987543 233333 478899999999966 89999999999999999999999999888899999
Q ss_pred EEECCCCC-eEEEEeCCCcEEEEeCCCC
Q 016187 284 IGFSRSSP-WAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 284 v~~~~~~~-~l~s~s~dg~i~iwd~~~~ 310 (394)
+.|+|..+ .++.++-||+|.||.+...
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecC
Confidence 99999877 7888999999999998643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=164.91 Aligned_cols=269 Identities=20% Similarity=0.335 Sum_probs=198.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCcccee--eeecccC-cCe
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHG-SSV 194 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~-~~v 194 (394)
..+|++-..|+|++||..+++.+..++++...++.++|.. ..+.+.+|+.||+|++||++..... ..+.++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5678888899999999999999999999999999999987 4678999999999999999865433 3444555 567
Q ss_pred EEEEECCCCCeEEEEe----CCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 016187 195 TCGDFTPDGKTICTGS----DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.|++....++.+++|. .+-.|.+||++..++ +..+. ..|...|+++.|+|. ..+|++|+.||-+.+||++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7888887888888885 467899999998776 44433 347889999999995 579999999999999999764
Q ss_pred c---EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccC--------------CCCEEEEEEeCC
Q 016187 269 K---VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDH--------------EDGVTCLMWLGT 330 (394)
Q Consensus 269 ~---~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~~~~ 330 (394)
. .+.....|...|.++.|...+ +.+.+.+..++..+|++........... ..-|.+. ...+
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~ 277 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH-SPGD 277 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc-cCCC
Confidence 2 233334577889999998776 4577888999999999976533221111 0112221 1223
Q ss_pred CCEEEEEeC-CCeEEEEEC---CCCe---EEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDS---LSGD---CVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~---~~~~---~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+.++. -++..++-+ .++. .+..+.| |...|.++.|...+.++.|||.||.+.+|..+
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 344444443 555555533 3333 3345655 67778999999999999999999999999854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=177.59 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=196.8
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
.++..|.+.|+.++|.|....|++++.|++|++|++.. -+.+.++.+|.++|.|++..+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36788999999999999999999999999999999832 1356789999999999999999999999999999
Q ss_pred EEEEeCCcc----------ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE
Q 016187 173 VWMWNADRA----------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (394)
Q Consensus 173 i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~ 242 (394)
|+.|++... .....+.||...++.+++++....|++++.||++|+|+...... ..+.....+ ....++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-CCcceE
Confidence 999965311 22346789999999999999999999999999999999876554 223222112 122334
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc-------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-
Q 016187 243 TISADS-TLALSGSKDGSVHMVNITTGKVVSSLVS-------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR- 313 (394)
Q Consensus 243 ~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 313 (394)
.+-... .+.++...-+.--+.++.....+..+.. -...+.-+..+|...+.+++..|+.|+++|..+..+.
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 433222 2223222223333333333333322221 1235777889999999999999999999998776443
Q ss_pred eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC
Q 016187 314 STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD 362 (394)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 362 (394)
....|...++++++.|++.+|++|+.||++++|......++.....|+.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 4567888999999999999999999999999999988888887777764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=164.04 Aligned_cols=287 Identities=16% Similarity=0.239 Sum_probs=213.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS------GNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
..+.+|.+.|.++.||.++++|++|+.|..+++|.+.. .+.+..... |...|.+++|...+..+++|..++++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34678999999999999999999999999999998742 334433333 34789999999999999999999999
Q ss_pred EEEeCCccceeeeecc--cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCC-CC
Q 016187 174 WMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISAD-ST 249 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~ 249 (394)
...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+..+. ...+-. ........++-|+|. ..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCce
Confidence 9999999887766532 234899999999999999999999999999987652 111111 112234566778885 46
Q ss_pred EEEEEeCCCcEEEEECCCCcE-E------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcceeccCCC-
Q 016187 250 LALSGSKDGSVHMVNITTGKV-V------SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHED- 320 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~-~------~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~- 320 (394)
++++++..+-+.+||.+..+. + ..+......-..+.|+|+|..+.+--....-.+||+.. ........|..
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 788889999999999875431 1 11111111224577999999888776666667788765 33333444433
Q ss_pred ------CEEEEEEeCCCCEEEEEeCCCeEEEEECCC----------C-------------eEEEEeecccCceeEEEEcc
Q 016187 321 ------GVTCLMWLGTSKYVVTGCVDGKVRVWDSLS----------G-------------DCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 321 ------~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~l~~~~ 371 (394)
.+.+++|..+. .+++|+.+-.|++|.+.. | +.+..++||...++.|.|+|
T Consensus 289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred cceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 24456665554 499999999999997631 1 12345789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 016187 372 HQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 372 ~~~~l~s~s~dg~i~iw~ 389 (394)
+..+|+|.|.++.++||.
T Consensus 368 H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcceEeccchhhheeccc
Confidence 999999999999999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=169.46 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=141.2
Q ss_pred eEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 016187 194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVN 264 (394)
Q Consensus 194 v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d 264 (394)
|+.++|.| |.+.||.++.||.|++|.+..+.. -..+. .|.+.|+++.|+|- ...|++++.|-+|++||
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee---cccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 66778888 778899999999999999865431 12222 46788999999994 56889999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+++++....+.+|++.|..++|||+|+.+|+.+.||+|++|+.++......-+ -...--.+.|.-++++++..+.|.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999999999999999999999999999999999999987653322111 111223467888999988776654
Q ss_pred ----eEEEEECCCCe--EEEE--eecccCceeEEEEccCCC-EEEEEeCCCcEEEEecc
Q 016187 342 ----KVRVWDSLSGD--CVRT--FSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 342 ----~i~iwd~~~~~--~~~~--~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~ 391 (394)
.|.+||..+-. .+.+ +..-.. +.--.+.+|.. ++++|-.|..|.+|.+-
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEec
Confidence 47888765432 2222 111111 11111234433 57788899999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=161.73 Aligned_cols=232 Identities=24% Similarity=0.407 Sum_probs=184.3
Q ss_pred CcEEEEEEc-------CCCCcEEEEecCCCeEEEEEcCCCeeeEeecC--cccCE---EEEEEcCCCCEEEEEeCCCcEE
Q 016187 65 DEVYSVACS-------PTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSV---SSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 65 ~~v~~~~~~-------p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~--h~~~V---~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+.|+...|- | +..++|+.+.+..|.+||..+|++...+++ |.+.+ .+++|+|||.+|+.| ....|+
T Consensus 105 ~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 457777775 4 467899999999999999999999887765 55443 589999999999855 678999
Q ss_pred EEeC-CCCceE---EEE----ecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCC
Q 016187 133 IWDP-SSGNLK---CTL----EGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 133 vwd~-~~~~~~---~~~----~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~ 203 (394)
++|+ ..|+.- .++ .+..+-+.+++|+|... .++.|+....+-||.-....++..+.+|.+.|+.+.|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9998 445321 111 12345678899999755 88999999999999988888888899999999999999999
Q ss_pred CeEEEEeC-CCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCC
Q 016187 204 KTICTGSD-DATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS 280 (394)
Q Consensus 204 ~~l~s~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~ 280 (394)
+.|++|+. |-.|-.||++.-. .+..+..|...+..-.-....|++.+|++|+.||.|++||++. +..+..+..|...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999976 6779999998543 3334444332222333467789999999999999999999988 6767788889999
Q ss_pred EEEEEECCCCCeEEEEeC
Q 016187 281 IECIGFSRSSPWAATGSM 298 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~ 298 (394)
++.++++|--+++|+++.
T Consensus 343 vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccceecCcccceeeeccC
Confidence 999999999999988764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=172.02 Aligned_cols=327 Identities=20% Similarity=0.287 Sum_probs=230.8
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC----CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~----~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
.|+-.+++.++||+ ++++|+|-.||+|.+|.-.. ......+.-|.++|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777899999996 67899999999999998432 12345688899999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-----------cCcCeEEEEECCCCCeE
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l 206 (394)
+++ ...++.-.++|..+.++|++.+.+....|+.|.+....+......++| ..+-.+.+.++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 556677788999999999999999999999999987654433222222 23345677889977788
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCC--C------CcccCeEEEEEcCCCCEEEEEe--------CC--CcEEEEECCCC
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGH--P------YHTEGLTCLTISADSTLALSGS--------KD--GSVHMVNITTG 268 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~--~------~~~~~i~~~~~~~~~~~l~~g~--------~d--g~i~i~d~~~~ 268 (394)
+-.+..|.|.+||+-+...+..+... . .+.-+++.++.+..|.++++.- .| -.+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 88899999999999888766554321 1 1223567777777888887753 23 35678865432
Q ss_pred c---EEEE--eccCCCCEEEEEEC-CCCC-eEEEEeCCCcEEEEeCCCC------Ccceec-----cCCCCEEEEEEeCC
Q 016187 269 K---VVSS--LVSHTDSIECIGFS-RSSP-WAATGSMDQKLIIWDLQHS------LPRSTC-----DHEDGVTCLMWLGT 330 (394)
Q Consensus 269 ~---~~~~--~~~h~~~i~~v~~~-~~~~-~l~s~s~dg~i~iwd~~~~------~~~~~~-----~~~~~v~~~~~~~~ 330 (394)
. .+.+ ...|...+.+..+. +... .+++++.||.++||-+... .....| .|..++++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 2222 24577665555544 3333 7999999999999987321 111111 26778899999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCC--CEEEEEeCCCcEEEEecc
Q 016187 331 SKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQ--DFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~s~dg~i~iw~~~ 391 (394)
|.. ++.+.+++|.+||..+ ..++.....-..++..+.|.... ...+.....+.+.+|++-
T Consensus 521 Gsl-la~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 521 GSL-LAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLL 583 (792)
T ss_pred CcE-EEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhh
Confidence 955 4556799999999988 33333333333344444444321 223344556677778764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=183.94 Aligned_cols=281 Identities=21% Similarity=0.369 Sum_probs=221.8
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+.||...|||++|.-+ ++++.||+.|..++||..+++.++..++||.+.|+.++.+....+++++|.|..|++|.+
T Consensus 183 ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 3446799999999999875 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee---ec-ccCcCeEEEEECCCCCeEEEEeCC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM---FS-GHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~---~~-~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
.++..+..+.+|.+.|++++|+|.- +.+.||++++||.+-...+.. .. .....+-.+.|-.++..++|++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 778899999999872211111 11 122445566777788899999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
+.-+.|.+..... +...+..+..+.+ ..+.+++-.+-.+.+|++.+|+..+.+.+|.+.+..+.++|-.+
T Consensus 338 ~ea~n~e~~~l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 338 GEARNHEFEQLAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cccccchhhHhhh---------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 9999987642111 1111112222222 24566677788899999999999999999999999999999765
Q ss_pred -eEEEEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 292 -WAATGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 292 -~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
+..+++.||...|||+-...+... .+| ..+....|+++|..++....-|.++|...-.++
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 456889999999999976654432 343 445566899999999888888999998754443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=157.43 Aligned_cols=290 Identities=16% Similarity=0.246 Sum_probs=215.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------CeeeEeecC-cccCEEEEEEcCCCCEEEEEeCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..+-+.+|.+.|++|.|+.+ +++||+||.|..+++|++.. .+.+..... |...|.|++|....++|++|+.+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44556799999999999985 78999999999999999753 344444433 55899999999999999999999
Q ss_pred CcEEEEeCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-ee--eeecccCcCeEEEEECCC-
Q 016187 129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YL--NMFSGHGSSVTCGDFTPD- 202 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~--~~~~~h~~~v~~~~~~~~- 202 (394)
++|.+.|+.+.+.+..+.. ..+.|+.+.-+|..+.|++.+.++.+.+||.+..+ .+ ............+-|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999887765542 34689999999999999999999999999987654 21 122223455667889995
Q ss_pred CCeEEEEeCCCcEEEEcCCCCceEEE----EcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 203 GKTICTGSDDATLRVWNPKSGENIHV----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 203 ~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
-.+|++.+..+-+.+||.+..+.... ..+.+........+.|+|.|+.+++--....-.+||+-+.++..--..|.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 45778888899999999886543111 11111112234567899999988877666677788887755432222232
Q ss_pred -------CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC------------------------CcceeccCCCCEEEEEE
Q 016187 279 -------DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS------------------------LPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 279 -------~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~------------------------~~~~~~~~~~~v~~~~~ 327 (394)
..+.++.|..+.. +++|+.+=.|.+|.+... ......+|...++.+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 2356677776554 899999999999987421 00112468888899999
Q ss_pred eCCCCEEEEEeCCCeEEEEE
Q 016187 328 LGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd 347 (394)
+|...+|++.+....++||.
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999999999999996
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-22 Score=184.65 Aligned_cols=281 Identities=21% Similarity=0.349 Sum_probs=215.9
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
.+..|.||..+|+|+.|...|.+++||+.|..++||...++.++..+.+|.+.++.++.+.+...++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 44567899999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc-ccCeEEEEEcCCCCEEEEEeCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~g~~d 257 (394)
..+..+..+.||.+.|++++|+|-. +.+.||++++||.+-.-.+..-+...+. ..-+.++.+...+.-+++|+.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 7789999999998721111110111111 1234556667778888999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCE-E
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKY-V 334 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l 334 (394)
+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++...+ .....+|...+..+.++|-+.. .
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 988777653211 11111111112211 2466677778889999987764 3445678899999999997654 4
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.+++.||+..|||+..|..++.+. +|. .+..-+|++||..++...+-|.+.|...
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 578999999999999998887654 555 4557789999998877666677777653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=156.93 Aligned_cols=270 Identities=18% Similarity=0.235 Sum_probs=192.9
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceEEE--EecCC-CCE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCT--LEGPG-GGV 152 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~vwd~~~~~~~~~--~~~~~-~~v 152 (394)
..+|++-..+.|++||..+++.+..+++|...+..+.|.. ....+.+|+.||+||+||+.+...... ..++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4678888899999999999999999999999999999987 456789999999999999987654332 23333 466
Q ss_pred EEEEEcCCCCEEEEecC----CCeEEEEeCCccce-ee-eecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce
Q 016187 153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LN-MFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~----d~~i~iw~~~~~~~-~~-~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
.+++.+..++++++|.. +-.+.+||++..+. ++ ....|...|+++.|+| +-++|+|||.||.|.|+|++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767888888764 56899999987654 43 3467999999999999 567899999999999999875432
Q ss_pred EEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCC------------CC-EEEEEECCCCC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHT------------DS-IECIGFSRSSP 291 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~------------~~-i~~v~~~~~~~ 291 (394)
--.+...-.+...|.++.|..++ +.+.+-+...+..+|++..+.....+.... .. |.+. ...+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH-SPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc-cCCCcc
Confidence 11111111244568888888776 457888899999999998876544332110 01 1111 122333
Q ss_pred eEEEEeC-CCcEEEEeCCC---CC-----cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 292 WAATGSM-DQKLIIWDLQH---SL-----PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 292 ~l~s~s~-dg~i~iwd~~~---~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.++.++. -++..++-+.. .. .....+|...|..+.|...+.++.||+.||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4444443 66776665432 11 1112236666888888888999999999999999974
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=169.04 Aligned_cols=292 Identities=20% Similarity=0.308 Sum_probs=224.6
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCCC--CEEEEecCCCeEEE
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRG--HIVLAGSEDSTVWM 175 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~s~d~~i~i 175 (394)
+...|..|.+.|..|.|...|..|++||.|..|.+||...+..+..+ .+|...|....|-|.. ..+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34567889999999999999999999999999999999988876655 4677777777888853 57899999999998
Q ss_pred EeCCccce---eeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc---CeEEEEEcCCC
Q 016187 176 WNADRAAY---LNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADS 248 (394)
Q Consensus 176 w~~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~ 248 (394)
=.+....+ .+.+..|.++|..++.-|+. .-|.+++.|+.+.-.|++.+.....+.....+.. ....++..|-.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 77543222 34456799999999999965 4688999999999999987754333321112222 56778888866
Q ss_pred C-EEEEEeCCCcEEEEECCCCc------EEEEeccC------CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----
Q 016187 249 T-LALSGSKDGSVHMVNITTGK------VVSSLVSH------TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL---- 311 (394)
Q Consensus 249 ~-~l~~g~~dg~i~i~d~~~~~------~~~~~~~h------~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---- 311 (394)
. .+++|+.|..+++||.+.-. .+.++..| .-.|++++|+.++.-|+++-.|-.|.+|.-....
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 88999999999999986522 23333222 3469999999887777777778889998532111
Q ss_pred ----------cceeccCCCC--EEEEE-EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEE
Q 016187 312 ----------PRSTCDHEDG--VTCLM-WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 312 ----------~~~~~~~~~~--v~~~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 378 (394)
+....+|... |.++- |.|...|+++|+.-|.|.||+-.+++.++.++|-+..|+||.-+|.-+.|||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 1112345432 55554 4688999999999999999999999999999987779999999999999999
Q ss_pred EeCCCcEEEEec
Q 016187 379 VSLDGTARVFEI 390 (394)
Q Consensus 379 ~s~dg~i~iw~~ 390 (394)
.|.|..||||.-
T Consensus 454 SGid~DVKIWTP 465 (559)
T KOG1334|consen 454 SGIDHDVKIWTP 465 (559)
T ss_pred cCCccceeeecC
Confidence 999999999964
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=150.59 Aligned_cols=260 Identities=20% Similarity=0.330 Sum_probs=190.5
Q ss_pred CCCeEEEEEcCCC--ee-eEeecCcccCEEEEEEcCCC-CEEEEEeCC-------CcEEEEeCCCCc---------eEEE
Q 016187 85 GDDKGFFWRINQG--DW-ASEIQGHKDSVSSLAFSMDG-QLLASGGLD-------GLVQIWDPSSGN---------LKCT 144 (394)
Q Consensus 85 ~d~~v~~w~~~~~--~~-~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d-------~~i~vwd~~~~~---------~~~~ 144 (394)
.|..|.+-++..+ ++ ...|..|.+.|+.++-+|-. +.|+|+-.+ ..+.||.+.... .+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3455555444322 22 23567788999999999965 566666543 246789865321 2223
Q ss_pred Ee-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-eeee-----cccCcCeEEEEECC--CCCeEEEEeCCCcE
Q 016187 145 LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMF-----SGHGSSVTCGDFTP--DGKTICTGSDDATL 215 (394)
Q Consensus 145 ~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~l~s~~~dg~i 215 (394)
+. .+.+.+.++-|.|++..+++-. |..|.+|++..++. ...+ ..|....++.+|+| +|+.+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 32 3446899999999998887755 89999999987654 2222 23566788899999 67777765 57999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCC-CCe
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRS-SPW 292 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~ 292 (394)
+.||+++..+...++. +|...+..+.|+|+- .+|++++.||.|++||.+.- .++.++.+|..+|.+|.|+|. .++
T Consensus 196 ~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999887766653 466779999999975 47788999999999999865 478889999999999999996 567
Q ss_pred EEEEeCCCcEEEEeCCCC------------------------------CcceeccCCCCEEEEEEeCCCCEE-EEEeCCC
Q 016187 293 AATGSMDQKLIIWDLQHS------------------------------LPRSTCDHEDGVTCLMWLGTSKYV-VTGCVDG 341 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg 341 (394)
+++++.|..|.+|..... .......|++.|.+++|+....++ |+-+.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 899999999999965311 011223588899999999877765 5568999
Q ss_pred eEEEEEC
Q 016187 342 KVRVWDS 348 (394)
Q Consensus 342 ~i~iwd~ 348 (394)
++.|=.+
T Consensus 354 RviIs~V 360 (370)
T KOG1007|consen 354 RVIISSV 360 (370)
T ss_pred eEEeecC
Confidence 9988654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-19 Score=159.33 Aligned_cols=242 Identities=19% Similarity=0.310 Sum_probs=188.1
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
...+.+.||++.|+++||+. ++.++|||+.|+.|.+|+......+. + .|.+.|.||.|+|-...|+|++-. ..-+|
T Consensus 44 ~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred ccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee-e-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 34677899999999999998 56789999999999999865433222 2 499999999999999999999865 35678
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--eeecccCcCeEEEEECCCC-----CeEE
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDG-----KTIC 207 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~-----~~l~ 207 (394)
........ .. .....+.+++|..+|.+++.|-.+|+|.+-+-...+.. ...-|...+|.+++|+|.. ..++
T Consensus 120 S~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 76543322 11 12346788999999999999999999999876543332 3334567899999999953 4677
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
......++..+.+. |+.+..-+. ..-...|+.+.++|.+++.|+.|+.+++|. +.|-.+.++-....+|..++..
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEec-ceeeccccc---CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 88888888888764 444332221 223456899999999999999999999996 5677777776678899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 016187 288 RSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~ 307 (394)
|++++++.|+.||+|..|++
T Consensus 273 PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred cCCceEEEEEccCeeehhhh
Confidence 99999999999999998875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=158.12 Aligned_cols=261 Identities=12% Similarity=0.143 Sum_probs=176.1
Q ss_pred EEEeCCCcEEEEeCCC-Cc--eEEEEecCCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCc-cce--eeeecccCcCeE
Q 016187 123 ASGGLDGLVQIWDPSS-GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR-AAY--LNMFSGHGSSVT 195 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~-~~~--~~~~~~h~~~v~ 195 (394)
++...++.|++|++.+ ++ .+..+. ..+....++++|++++|++++ .++.|.+|++.. +.. ..... ....+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4446789999999964 43 334443 335577899999999886654 578999999863 322 22221 233456
Q ss_pred EEEECCCCCeEEEEeC-CCcEEEEcCCCCc----eEEEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 016187 196 CGDFTPDGKTICTGSD-DATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGK 269 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~ 269 (394)
.++|+|++++|++++. ++.|.+|++.+.. .+..+. ......++.++|++++++++ ..++.|.+||+.+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 7999999998887764 8899999986432 122221 12345678899999888654 466999999997643
Q ss_pred EEE-------EeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCC--Ccce--ec-c------CCCCEEEEEEeCC
Q 016187 270 VVS-------SLVSHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHS--LPRS--TC-D------HEDGVTCLMWLGT 330 (394)
Q Consensus 270 ~~~-------~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~~--~~-~------~~~~v~~~~~~~~ 330 (394)
.+. ... .......++|+|++++++++.. +++|.+|++... .... .. . +......+.++|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111 1234567999999999988776 899999998632 1111 11 0 1112335789999
Q ss_pred CCEEEEEeC-CCeEEEEECCCCe----EEEEeecccCceeEEEEccCCCEEEEEeC-CCcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDSLSGD----CVRTFSGHRDAIQAISVSAHQDFLVSVSL-DGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iw~~~ 391 (394)
+++|+++.. ++.|.+|++.... .+..+.. ......+.|+|++++|+++.. +++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999854 7899999985432 2222222 124568999999999997775 8999999874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=171.27 Aligned_cols=281 Identities=16% Similarity=0.276 Sum_probs=205.9
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---CCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCc--
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADR-- 180 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~-- 180 (394)
.+-..+.|+|-...++++.....|+|||...++.+..+.. ....|+.+.+-. +..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3456788999888999998788999999999888766543 335677777754 345889999999999997422
Q ss_pred ---cceeeeecc---c----CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCC
Q 016187 181 ---AAYLNMFSG---H----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DST 249 (394)
Q Consensus 181 ---~~~~~~~~~---h----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 249 (394)
.+.+..+.+ + .+.-.-++|.....+|++++.-..|||||....+....+... ....+++++-+. .|+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--SSTLVTALSADLVHGN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--CCccceeecccccCCc
Confidence 222222221 1 111122467776666666666899999999877766555422 234466665443 468
Q ss_pred EEEEEeCCCcEEEEECCCCc---EEEEeccCCCC--EEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCccee---cc---
Q 016187 250 LALSGSKDGSVHMVNITTGK---VVSSLVSHTDS--IECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPRST---CD--- 317 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~---~~--- 317 (394)
.+++|..||.|++||.+... .+.....|... |..+.+-+.|-- |++|+.+|.|++||++....... ..
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 99999999999999987542 45666778877 999999887654 99999999999999987422111 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc-------cCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH-------RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
....++++..++....+|+|+. +.|+||++. |+++..++.+ .+.+.+++|+|..-++|.|+.|.+|.||..
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 2235899999999999999998 999999974 5555544432 356799999999999999999999999987
Q ss_pred cC
Q 016187 391 AD 392 (394)
Q Consensus 391 ~~ 392 (394)
..
T Consensus 1381 ~k 1382 (1387)
T KOG1517|consen 1381 EK 1382 (1387)
T ss_pred CC
Confidence 64
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=172.49 Aligned_cols=285 Identities=19% Similarity=0.352 Sum_probs=204.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcc---cCEEEEEEcC--CCCEEEEEeCCCcEEEEeCC-
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK---DSVSSLAFSM--DGQLLASGGLDGLVQIWDPS- 137 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~---~~V~~v~~s~--~g~~l~t~s~d~~i~vwd~~- 137 (394)
..+-..+.|+|-... ++++.....++|||.+.++....+..+. ..|+.+.+-. |..+|++|+.||.||||+--
T Consensus 1064 ~~~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCCce-eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 334566778886554 5566667889999999998877776543 5688888864 45689999999999999742
Q ss_pred C----CceEEEEe-------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc-CcCeEEEEEC-CCCC
Q 016187 138 S----GNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFT-PDGK 204 (394)
Q Consensus 138 ~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~-~~~~ 204 (394)
+ .+.+.... +..+.-.-+.|.....+|++++.-..|+|||.....+...+... ...++++.-. +.|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22222221 11111134678877777777777899999999988777665443 4455655433 3579
Q ss_pred eEEEEeCCCcEEEEcCCCCce---EEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE--EEEeccCC
Q 016187 205 TICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKV--VSSLVSHT 278 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~ 278 (394)
.+++|..||+||+||.+.... +...+.|.. ..+|..+.+.+.|- .+++|+.+|.|++||++.... ..++..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCC-cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999876543 333444322 22388899988765 499999999999999987422 22233343
Q ss_pred --C-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 279 --D-SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 279 --~-~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+ ..+++..++..+.+|+|+. +.|+||++...+..... .....+.|++|+|...++|+|+.|..|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3 4899999999999999998 99999998754322211 22345799999999999999999999999976
Q ss_pred CCC
Q 016187 349 LSG 351 (394)
Q Consensus 349 ~~~ 351 (394)
...
T Consensus 1381 ~k~ 1383 (1387)
T KOG1517|consen 1381 EKP 1383 (1387)
T ss_pred CCc
Confidence 543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=154.18 Aligned_cols=194 Identities=24% Similarity=0.293 Sum_probs=153.0
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
.+++|+++|..|++|+.||++|+|+......+... ..|...|..+.|+|||+++++-+.| ..++|+..++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67899999999999999999999996555433322 2356789999999999999999999 9999999999766555
Q ss_pred cc--CCCCEEEEEECCCC-----CeEEEEeCCCcEEEEeCCCC------CcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 275 VS--HTDSIECIGFSRSS-----PWAATGSMDQKLIIWDLQHS------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 275 ~~--h~~~i~~v~~~~~~-----~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.. -......+.|+.+. ..++.....+.|+.|++... ..+........+++++.+++|++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 42 22345567787766 33444455667777776432 1122223345799999999999999999999
Q ss_pred eEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 342 KVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 342 ~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|-|+++.+-++++-. +.|...|+.|.|+||.+++++.+.|..+++..+.-
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999988887755 48999999999999999999999999999988753
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-18 Score=154.25 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=179.5
Q ss_pred EEEecCCCeEEEEEcCC-Ce--eeEeecCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCceE--EEEecCCCCE
Q 016187 80 VATGGGDDKGFFWRINQ-GD--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPS-SGNLK--CTLEGPGGGV 152 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~-~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~~-~~~~~--~~~~~~~~~v 152 (394)
.++...++.|.+|++.+ ++ .+..++ +.+....++++|++++|++++ .++.|.+|++. ++... .... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44456789999999963 33 444554 345677899999999887664 57889999986 34432 2222 23356
Q ss_pred EEEEEcCCCCEEEEec-CCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCCCeEEE-EeCCCcEEEEcCCCCceE
Q 016187 153 EWVSWHPRGHIVLAGS-EDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENI 226 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~ 226 (394)
..++|+|+++++++++ .++.+.+|++++.. .+..+. +...+.+++++|+++++++ ...++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 7899999999887766 48899999986421 222222 2234567889999998854 456699999999764322
Q ss_pred EE-----EcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--Cc--EEEEeccC------CCCEEEEEECCCC
Q 016187 227 HV-----IRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT--GK--VVSSLVSH------TDSIECIGFSRSS 290 (394)
Q Consensus 227 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~--~~--~~~~~~~h------~~~i~~v~~~~~~ 290 (394)
.. ... ........+.++|++++++++.. +++|.+|++.. ++ .+.++..+ ......+.++|++
T Consensus 162 ~~~~~~~~~~--~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 162 VAQEPAEVTT--VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccCCCceec--CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 11 111 11234678899999999988776 89999999973 32 33333221 1223468899999
Q ss_pred CeEEEEeC-CCcEEEEeCCCCCc-ceeccC---CCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC
Q 016187 291 PWAATGSM-DQKLIIWDLQHSLP-RSTCDH---EDGVTCLMWLGTSKYVVTGCV-DGKVRVWDSL 349 (394)
Q Consensus 291 ~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~---~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~ 349 (394)
++++++.. ++.|.+|++..... .....+ ......+.++|++++|+++.. +++|.+|++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99888854 78999999854321 111111 123457889999999998775 8999999763
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=140.22 Aligned_cols=271 Identities=16% Similarity=0.238 Sum_probs=188.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.|++-+++|. +++|+.|..+|++.+..+++- ..+...++|..+|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4566688995 567888999999999987531 2344568999999999998 34666665 69999887
Q ss_pred CCCCce------EEEE--ec-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC
Q 016187 136 PSSGNL------KCTL--EG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 136 ~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~ 202 (394)
.+.... +..+ +. .-..|+++...|..+.++.++.|+.++.||+++++..+.+.||.+.+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 543321 1111 11 1235888999999888888889999999999999999999999999999987555
Q ss_pred CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 203 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
...+++|+.||++|+||+++++.+..+..... ....|.+++.+ ...+++| ....+.+|++++.++...+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEe
Confidence 66789999999999999999999887764221 12234555543 4566554 45689999999987765553
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVW 346 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iw 346 (394)
-..++..+.|-.+ .+++++..+.+.-|.+...............++..|+... ++|..++...++.|+
T Consensus 245 -ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 -IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 3456667777654 5778888888888876543222211112233444444332 344445555556555
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=143.87 Aligned_cols=277 Identities=18% Similarity=0.312 Sum_probs=197.8
Q ss_pred cEEEEEEc--CCCCcEEEEecC----CCeEEEEEc--CCCeeeEee-cCcccCEEEEEEcCCC-----CEEEEEeCCCcE
Q 016187 66 EVYSVACS--PTDATLVATGGG----DDKGFFWRI--NQGDWASEI-QGHKDSVSSLAFSMDG-----QLLASGGLDGLV 131 (394)
Q Consensus 66 ~v~~~~~~--p~~~~~lasg~~----d~~v~~w~~--~~~~~~~~~-~~h~~~V~~v~~s~~g-----~~l~t~s~d~~i 131 (394)
..+++.|+ |+.+..||-|+- ...|.|-.+ .+++.+..- ..|.-+++.+.|.|+. .+|||.+ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 67888887 444567888873 334444333 344443321 3588999999999986 3566654 479
Q ss_pred EEEeCCC--CceE--EEE-----ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEE
Q 016187 132 QIWDPSS--GNLK--CTL-----EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGD 198 (394)
Q Consensus 132 ~vwd~~~--~~~~--~~~-----~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~ 198 (394)
|+|.+.. .+.. ..+ ..+.+++++..|+.- -+++.+.|-|.+..+||++++. ....+-+|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9998873 2221 111 234568888889864 4688899999999999998863 3556778999999999
Q ss_pred ECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEE-EeCCCcEEEEECCC-CcEEEEe
Q 016187 199 FTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALS-GSKDGSVHMVNITT-GKVVSSL 274 (394)
Q Consensus 199 ~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-g~~dg~i~i~d~~~-~~~~~~~ 274 (394)
|...+ +.||+.+.||+||++|++..+....+-..+....+..-+++++.. +++++ +.....|.+.|++. ..++..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99855 478999999999999999876555554444445567778888754 45554 34556799999986 4678899
Q ss_pred ccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCc------ceeccCCCCEEEEEEeCC-CCEEEEEeCCCeEEE
Q 016187 275 VSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLP------RSTCDHEDGVTCLMWLGT-SKYVVTGCVDGKVRV 345 (394)
Q Consensus 275 ~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~i 345 (394)
+.|.+.|+.++|.|.. ..+++++.|..+.|||+..... .........|+.+.|++. +.+++.+ .+.++.+
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~-~~kklei 361 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC-FGKKLEI 361 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE-ecCeeeE
Confidence 9999999999999975 5799999999999999975322 122335567999999965 4555544 3444433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-19 Score=170.61 Aligned_cols=296 Identities=18% Similarity=0.289 Sum_probs=208.6
Q ss_pred EEcCCCeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCCCE
Q 016187 92 WRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 92 w~~~~~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
|+. .|..+..+..|...|..++.++.. .+++|||.||+||+|++..- +...++......+..+...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 443 466778888999999999988765 99999999999999997532 223344445678899999999999
Q ss_pred EEEecCCCeEEEEeCCcc--c-----eeeee--cccCcCeEEEEECC-CCC-eEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 164 VLAGSEDSTVWMWNADRA--A-----YLNMF--SGHGSSVTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 164 l~~~s~d~~i~iw~~~~~--~-----~~~~~--~~h~~~v~~~~~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
+|.++.||.|++..++.. + ..+.. ...+..|..-+|.. .+. .|+-+..-+.|..||++.......++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999988651 1 11111 22233344445554 233 6777888899999999887665555543
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCCEEEEEECCCC---CeEEEEe--CCCcEEEEe
Q 016187 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSS---PWAATGS--MDQKLIIWD 306 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~v~~~~~~---~~l~s~s--~dg~i~iwd 306 (394)
. ..+.|++++++|.+..+++|+..|.+.+||++-+.++.+.. .+..+|+.+..+|-. .+.++++ .-+.|.+|+
T Consensus 1193 ~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 L-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred c-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 3 34579999999999999999999999999999988877653 345778888877653 3444444 467899999
Q ss_pred CCCCCcceecc--------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE------------
Q 016187 307 LQHSLPRSTCD--------------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV------------ 354 (394)
Q Consensus 307 ~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~------------ 354 (394)
+.++......- +.-....+.+...+.++.+|+.|..|+.||..+.+..
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 87654332210 0011122233345678999999999999986321111
Q ss_pred ------------------------------------EE--------eecccCceeEEEEccC-CCEEEEEeCCCcEEEEe
Q 016187 355 ------------------------------------RT--------FSGHRDAIQAISVSAH-QDFLVSVSLDGTARVFE 389 (394)
Q Consensus 355 ------------------------------------~~--------~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw~ 389 (394)
.. -..|..+|++|++-.. ..+|++++.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0136778888887654 46899999999999995
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=159.68 Aligned_cols=212 Identities=19% Similarity=0.310 Sum_probs=158.8
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCC--CCEEEEEeCCCcEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD--GQLLASGGLDGLVQ 132 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~ 132 (394)
..+.+.||++.|+|++|+. ++.+||||+.|-.+.|||....+++..+ .||...|.++.|-|. .++++||+.|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4566899999999999997 5779999999999999999887777665 689999999999984 46889999999999
Q ss_pred EEeCCCC----------ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccce----------eeeecccC
Q 016187 133 IWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----------LNMFSGHG 191 (394)
Q Consensus 133 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~----------~~~~~~h~ 191 (394)
++|+... +....+..|...|..++-.|++ +.+.+++.||+++-+|++.... +..+.+.-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9998742 1233445677888889999988 7899999999999999875211 11122222
Q ss_pred cCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCC--------c----------eEEEEc-CCCCcc--------cCeEEEE
Q 016187 192 SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSG--------E----------NIHVIR-GHPYHT--------EGLTCLT 243 (394)
Q Consensus 192 ~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~--------~----------~~~~~~-~~~~~~--------~~i~~~~ 243 (394)
-...|+.++|. ..+|+.|+.|-..++||.+.. . ++..+. +|.... ..++.++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 35678899994 568999999999999994321 0 111111 111001 1256688
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 244 ISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
|+|+|.-+++.-....|+++|+..+
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCC
Confidence 9999998888777778899887654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-18 Score=143.03 Aligned_cols=306 Identities=19% Similarity=0.243 Sum_probs=219.9
Q ss_pred EEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 70 ~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
..|+|+ ++++|+.+. .++.|-|.++-+..+.+. --+.|.-+.|..|..++ .....++.|.+|++...+..+++...
T Consensus 14 c~fSp~-g~yiAs~~~-yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPC-GNYIASLSR-YRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCC-CCeeeeeee-eEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 468995 678998865 478888887765444332 25678889999888665 45678889999999999999999988
Q ss_pred CCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC----------------
Q 016187 149 GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---------------- 211 (394)
Q Consensus 149 ~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------------- 211 (394)
..++.+++|+|+|+ +|.+..-+-.|.+|.+.+.+.... +--...+..++|+|+|++.+.++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999995 556666789999999987764332 112334577899999998776542
Q ss_pred --------------------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 212 --------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 212 --------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
+..+.+||..-.-.+.... ..-++..+.++|.++++++|+.|+.+++.+--+.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 1234455432111111111 2346889999999999999999999987552211110
Q ss_pred EE------------------------------------------------------------ecc------CCCCEEEEE
Q 016187 272 SS------------------------------------------------------------LVS------HTDSIECIG 285 (394)
Q Consensus 272 ~~------------------------------------------------------------~~~------h~~~i~~v~ 285 (394)
.. ++. ..-.+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00 000 011345689
Q ss_pred ECCCCCeEEEEeC--CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 286 FSRSSPWAATGSM--DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 286 ~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
|++|..++++-.. -+.+-+||++............+|....|.|....|+......++++|......++.. .+.+-.
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~ 404 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFN 404 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCce
Confidence 9999999998643 4678999999876666666778899999999999999888888899997655455543 223356
Q ss_pred eeEEEEccCCCEEEEEeCCCc
Q 016187 364 IQAISVSAHQDFLVSVSLDGT 384 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~ 384 (394)
|..+.|.-+|..++-++.|..
T Consensus 405 i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 405 IQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeEEecCCCcEEEEEcCCce
Confidence 999999999999999988864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=162.41 Aligned_cols=264 Identities=19% Similarity=0.234 Sum_probs=193.7
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce--EE----EEecCCCCEEEEEEc
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL--KC----TLEGPGGGVEWVSWH 158 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~ 158 (394)
++.+.||++.........-.-...|+|++|+|.. .+||.|..+|+|.+||+..+.. .. ....|..++..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 3478899987653222223346789999999955 6788899999999999987654 21 223577899999997
Q ss_pred CCCC--EEEEecCCCeEEEEeCCccce------eeeec------ccCcCeEEEEECC-CCCeEEEEeCCCcEEEEc---C
Q 016187 159 PRGH--IVLAGSEDSTVWMWNADRAAY------LNMFS------GHGSSVTCGDFTP-DGKTICTGSDDATLRVWN---P 220 (394)
Q Consensus 159 ~~~~--~l~~~s~d~~i~iw~~~~~~~------~~~~~------~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd---~ 220 (394)
.+.. -+++++.||.|..|+++.... ..... .....+++++|.+ +-..++.|+..|.|..=. .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7544 499999999999998754221 00000 1234578899988 556789999999987633 2
Q ss_pred CCCc-eE-EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCCCCEEEEEECCCCC-eEEEE
Q 016187 221 KSGE-NI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRSSP-WAATG 296 (394)
Q Consensus 221 ~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~ 296 (394)
+... .+ .....+..|..+++++.++|-+..++..+.|-+++||... ...++..+..+...+++++|||..+ .++++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 2221 01 1122445678899999999988766666669999999987 6677888888888999999999876 67888
Q ss_pred eCCCcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 297 SMDQKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..||.|.|||+......... .+....+.+.|++.++.|+.|...|++.+|++.
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 88999999999654332221 124556778888889999999999999999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=158.33 Aligned_cols=262 Identities=18% Similarity=0.246 Sum_probs=188.7
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEE-EEEcC-------CCCEEEEecCCCeEEEE
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VSWHP-------RGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~-------~~~~l~~~s~d~~i~iw 176 (394)
.|...|.|+.|+.....+.+++.+..++-||+.+. ....+..+...+.. +..-+ ....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677789999988777766654444444454332 22222222222211 11111 23478899999999988
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+-. ++..+...+|.+.+.+..|+|+|.-|++++.||.|++|.- +|-...++. ....+|.|++|.|+...++-+.
T Consensus 91 ~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~---Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 91 NKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV---QNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred ccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh---hcCceeEEEEECCCCCceEEec-
Confidence 643 4556778899999999999999999999999999999974 332211221 1356799999999987766553
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 336 (394)
.+.+.|=.+.....+-...+|.+-|.++.|++...++++|+.|-+.++||-..........|+.+|++++|.|+ ...+.
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 35566666666656667889999999999999999999999999999999876655556678999999999999 45555
Q ss_pred EeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 337 GCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
||.+ +++ | +...+.|..++|++||..++.|...|.+.+
T Consensus 244 ~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 5422 222 3 234578999999999999999998887654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=138.96 Aligned_cols=230 Identities=14% Similarity=0.227 Sum_probs=171.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCc----------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADR----------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
|..-+|+|.+++|++|+.+|.|.+..+++ ...+...++|.+++..++|. ..+|++|+ ||.|+=|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 34457899999999999999999998753 23345568999999999998 34667766 5999998765
Q ss_pred CCce-EE---EEc-CCCC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 222 SGEN-IH---VIR-GHPY-----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 222 ~~~~-~~---~~~-~~~~-----~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
.... .. .++ ..+. ....|+.+...|..+-++.++.|+.++-||+.+|+....+.+|++.|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4321 00 000 0111 224588999999887777777999999999999999999999999999999877777
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceecc---CC--------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTCD---HE--------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~~---~~--------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
.+++|+.||++++||+++.+...... |+ ..|-+++ .+..+++.|+ .-.+.+|+++..++...|.-
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfpi- 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI- 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEec-
Confidence 89999999999999998875544332 11 1234443 3556777664 56799999999988877763
Q ss_pred cCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 361 RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 361 ~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
..+|..+.|-. +.++++|..+.|.-|.+
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeee
Confidence 55677777753 67778887777777764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=145.89 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=159.9
Q ss_pred eecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCe
Q 016187 102 EIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDST 172 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~ 172 (394)
.+.||+++|..++|+|- ...+|+||.|.+|+||.+..+ +....+.+|...|.-++|||.. +.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 35789999999999995 468999999999999997654 3456788999999999999975 58899999999
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
|.+|++.++..+-.+. |...|.++.|+.+|.+|++++.|+.|||||.++++.+..-..|..+ .-.-+.|-.++.++-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--KPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC--CcceeEEeccCceee
Confidence 9999999998777776 9999999999999999999999999999999999887665444322 222344556777555
Q ss_pred EEe---CCCcEEEEECCCCc---EEEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCC
Q 016187 253 SGS---KDGSVHMVNITTGK---VVSSLVSHTDSIECIGFSRSSPWAAT-GSMDQKLIIWDLQHS 310 (394)
Q Consensus 253 ~g~---~dg~i~i~d~~~~~---~~~~~~~h~~~i~~v~~~~~~~~l~s-~s~dg~i~iwd~~~~ 310 (394)
+|- .+..+-+||..+.. .+..+. -...|.---+.++..++.. |=.|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 553 57789999876543 233333 2344555557888776654 556899999988654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=148.28 Aligned_cols=250 Identities=23% Similarity=0.296 Sum_probs=178.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC--------C------C--eeeEeecCcccCEEEEEEcCCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q------G--DWASEIQGHKDSVSSLAFSMDG 119 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~--------~------~--~~~~~~~~h~~~V~~v~~s~~g 119 (394)
....+..|..+|+++.|+|+ +.+||||+.++.+.+|... + . .....+.+|.+.|+.++|+|++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 45667899999999999995 6799999999999999876 2 1 1335688999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-----------
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------- 188 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~----------- 188 (394)
.++++++.|.++++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.....+.++...
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999999999999999999999999999999999877776654332221110
Q ss_pred --------ccC----cCeEEEEECCCCCeEEEEeC----CCcE-----EEEcCCCCc-eEEEEcCCCCcccCeEEEEEc-
Q 016187 189 --------GHG----SSVTCGDFTPDGKTICTGSD----DATL-----RVWNPKSGE-NIHVIRGHPYHTEGLTCLTIS- 245 (394)
Q Consensus 189 --------~h~----~~v~~~~~~~~~~~l~s~~~----dg~i-----~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~- 245 (394)
.|. .-...++|+|+|.+|++.+. .+.+ .+++-+.-+ ....+. ....+...+.++
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~p 292 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSP 292 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeee
Confidence 011 12345789999999887642 2222 233221111 111111 111112222222
Q ss_pred -----------------CCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 246 -----------------ADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 246 -----------------~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
|-.-.++.+ ....+.+||.++..++.... -|-..|+.++|++++..|+..|.||...+.-+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 222234444 45679999998877665543 37789999999999999999999998877655
Q ss_pred CCC
Q 016187 308 QHS 310 (394)
Q Consensus 308 ~~~ 310 (394)
...
T Consensus 372 e~~ 374 (434)
T KOG1009|consen 372 EPW 374 (434)
T ss_pred cch
Confidence 443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=155.64 Aligned_cols=263 Identities=17% Similarity=0.253 Sum_probs=188.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccce--e----eeecccCcCeEEEEECC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY--L----NMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~--~----~~~~~h~~~v~~~~~~~ 201 (394)
+.+.||++.........-.....|.++.|+|.. ++++.|..+|+|.+||+..... . .....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 468899988763222233356789999999965 5778888999999999986544 1 22345888999999876
Q ss_pred CC--CeEEEEeCCCcEEEEcCCCCceE-E--EEc--C----CCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--
Q 016187 202 DG--KTICTGSDDATLRVWNPKSGENI-H--VIR--G----HPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-- 267 (394)
Q Consensus 202 ~~--~~l~s~~~dg~i~vwd~~~~~~~-~--~~~--~----~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~-- 267 (394)
+. .-+++++.||.|..|+++.-... . ... . .......++++.|.+ +...+++|+..|.|..-+-..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 44 44999999999999987643221 0 000 0 001234688899988 456789999999998744322
Q ss_pred -Cc-----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC-CCCcce-eccCCCCEEEEEEeCCCC-EEEEEe
Q 016187 268 -GK-----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ-HSLPRS-TCDHEDGVTCLMWLGTSK-YVVTGC 338 (394)
Q Consensus 268 -~~-----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~~~-~l~sg~ 338 (394)
.. .+..+..|.++|+++.++|=+..+...+.|-+++||... ...+.. ...+...|++++|+|... .++++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 233556789999999999987654444449999999876 333332 234555699999999864 566777
Q ss_pred CCCeEEEEECCCC--eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 339 VDGKVRVWDSLSG--DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 339 ~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.||.|.+||+... +.+.+..-+....+.+.|++.++.|+.|...|++.+|++.
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 8999999998643 3445555556667888888899999999999999999985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-16 Score=133.42 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=197.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCcccee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYL 184 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~ 184 (394)
...+..+.|..+...|..|+.|| -+++.................|--+-|+. .+++..+. -+.+++++.+....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 45577788999999999999998 57777665443222222222343444553 34444443 346899999888777
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHM 262 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g--~~dg~i~i 262 (394)
+.+. ...+|.++.++. ++|+.+-.+. |.|||+++.+.++++...+.+..++..+++++.+.+++.= ...|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7654 355788888864 4566655544 9999999999998887665566678777777777787753 34689999
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc-EEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEe
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK-LIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~ 338 (394)
||+.+-+.+..+.+|.+++.|++|+++|.+|||+|..|+ ||+|.+..+....... ....|.+++|+|++++|++.|
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 999999999999999999999999999999999999998 6899987654433221 134588999999999999999
Q ss_pred CCCeEEEEECCCCe---------------------------E-------EEEee---cccCce-eEEEEc--cCCCEEEE
Q 016187 339 VDGKVRVWDSLSGD---------------------------C-------VRTFS---GHRDAI-QAISVS--AHQDFLVS 378 (394)
Q Consensus 339 ~dg~i~iwd~~~~~---------------------------~-------~~~~~---~h~~~v-~~l~~~--~~~~~l~s 378 (394)
..++|.+|.+.... + .+.|. .-.... ....+. +..+.+..
T Consensus 238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 99999999753211 0 01110 001111 122333 46788999
Q ss_pred EeCCCcEEEEecc
Q 016187 379 VSLDGTARVFEIA 391 (394)
Q Consensus 379 ~s~dg~i~iw~~~ 391 (394)
++.||....|.+.
T Consensus 318 as~dG~~y~y~l~ 330 (391)
T KOG2110|consen 318 ASYDGHLYSYRLP 330 (391)
T ss_pred EEcCCeEEEEEcC
Confidence 9999999999875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=137.48 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=165.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC-Ccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~-~~~ 181 (394)
-.++|+|.+|++|++.+|.+-....|.||.....+ ..+++..|...|+.+.|+|..+.|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35789999999999999999999999999877654 56788999999999999999999999999999999998 443
Q ss_pred c--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC-CCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 182 A--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 182 ~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+ ....+..+....+++.|+|.++.||+|+..+.|.||-.+.....-.-+. ..-....|++++|+|++-++++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3 2233455788899999999999999999999999998765443211110 011345699999999999999999999
Q ss_pred cEEEEECC------------------CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 259 SVHMVNIT------------------TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 259 ~i~i~d~~------------------~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
..++|..- -|+++.++....+.+..+.|+|+|..|+-.+.|+++.+-|....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99998631 12333344345678999999999999999999999999887654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=158.43 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=162.0
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
+..+++||..... ...+..|...+.+++|||||++|+.++.+ ..|++||+.+++.... ....+....++|+|+++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 5789999986555 45677788899999999999999887754 3699999988764322 21222344689999999
Q ss_pred EEEEec-CCCeEEE--EeCCccceeeeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCC-ceEEEEcCCCCccc
Q 016187 163 IVLAGS-EDSTVWM--WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE 237 (394)
Q Consensus 163 ~l~~~s-~d~~i~i--w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~-~~~~~~~~~~~~~~ 237 (394)
.|+.++ .++.+.+ |++.++.. ..+..+...+....|+|||+.|+.++ .++..+||++... .....+ .+ .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~---~- 334 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG---R- 334 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC---C-
Confidence 887654 6776554 56665553 44555666778899999999877554 5788888876432 222222 21 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCCCcce
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL---QHSLPRS 314 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~---~~~~~~~ 314 (394)
. .+..++|+++.++..+.++ +.+||+.+++.......+ ....+.|+|++.+++.++.++...+|.+ .....+.
T Consensus 335 ~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 335 G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 1 3467999999998887765 556999888654322222 3356789999999999999998887765 3333333
Q ss_pred eccCCCCEEEEEEeCC
Q 016187 315 TCDHEDGVTCLMWLGT 330 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~ 330 (394)
...|...+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 4456666778888874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=157.87 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccce--eeeecccCcCeEEEEECCC
Q 016187 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAY--LNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~ 202 (394)
+..|.+||..... ...+..+...+...+|+|+++.|+.++.+ ..|++||+.+++. +..+.+|. ...+|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence 4689999986554 44566677789999999999988877643 4799999987653 33344443 35799999
Q ss_pred CCeEEEEe-CCCcEEEE--cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC-cEEEEeccC
Q 016187 203 GKTICTGS-DDATLRVW--NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTG-KVVSSLVSH 277 (394)
Q Consensus 203 ~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~-~~~~~~~~h 277 (394)
|+.|+.++ .+|.+.|| |+.+++. ..+.. +...+....|+|+|+.++.. ..++...+|++... .....+ .+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~---~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTS---GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-Eeecc---CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 99888764 67876655 6655543 33332 23346678999999976654 46788888876432 222222 33
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS--LSGDCVR 355 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~--~~~~~~~ 355 (394)
.. ....|+|++++++..+.++ +.+||+.+......... .......|+|++++|+.++.+|.+++|.+ .+|+.++
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 33 4578999999998887765 55699876543322211 12345789999999999999998888875 4688899
Q ss_pred EeecccCceeEEEEccC
Q 016187 356 TFSGHRDAIQAISVSAH 372 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~ 372 (394)
.+.+|.+.+...+|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 99999988999999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-16 Score=141.79 Aligned_cols=309 Identities=17% Similarity=0.149 Sum_probs=197.4
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
+.+-..++.+.+.|..+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+++.+.+++.. .....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 345667899999999999999999865554456789999999999999999999999999998888754 3467799999
Q ss_pred CCCEEEEec-CCCeEEEEeCCccceeeeeccc-------CcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEE--E
Q 016187 160 RGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIH--V 228 (394)
Q Consensus 160 ~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~--~ 228 (394)
+|++++++. .++.+.++|.++.+.++.+... ...+..+..+|....++.. -..+.|-+-|....+.+. .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999887665 6899999999998888776543 2356677778887755554 445888888877655432 2
Q ss_pred EcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEec----cCCCCEEEEEECCCC-CeEEE-------
Q 016187 229 IRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLV----SHTDSIECIGFSRSS-PWAAT------- 295 (394)
Q Consensus 229 ~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~----~h~~~i~~v~~~~~~-~~l~s------- 295 (394)
+.. .....-..++|++++++++ ..+..|-++|..+++.+..+. .|..+...+ .+|.. ..-++
T Consensus 168 i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 168 IKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred ecc----cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence 221 2235567899999987664 567799999999988776553 233444433 23322 21222
Q ss_pred --EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCeEEEEeecc-cCceeEEE
Q 016187 296 --GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG----CVDGKVRVWDSLSGDCVRTFSGH-RDAIQAIS 368 (394)
Q Consensus 296 --~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~ 368 (394)
.-....+.+||...............-.-+..+|++++|.+. ...+.|.++|..+.+.+..+... ...+.++.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 222223444555544433333322222566779999999987 44589999999999888887632 23588999
Q ss_pred EccCCCEEEEEeCC--CcEEEEeccCCC
Q 016187 369 VSAHQDFLVSVSLD--GTARVFEIADFK 394 (394)
Q Consensus 369 ~~~~~~~l~s~s~d--g~i~iw~~~~~~ 394 (394)
|+++|+.+.....+ +.|.+||-+++|
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 99999976544433 379999988764
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=149.30 Aligned_cols=196 Identities=23% Similarity=0.266 Sum_probs=151.9
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE- 146 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~- 146 (394)
.+++|+++ +.++|+|+.||++|+|+..+...+.....|...|.++.|||||++|++-+.| ..+||++.+|..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67889884 5689999999999999998888888888999999999999999999999999 89999999995544333
Q ss_pred -cCCCCEEEEEEcCCC---CEEEEe--cCCCeEEEEeCCccc---e--eeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 147 -GPGGGVEWVSWHPRG---HIVLAG--SEDSTVWMWNADRAA---Y--LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 147 -~~~~~v~~~~~~~~~---~~l~~~--s~d~~i~iw~~~~~~---~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
.....+..+.|+.++ .+++.+ ..-+.++.|++.... . .+....-...|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345667888776 333333 334566666543211 1 11111223468999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
-|++..+-+.++.++. .|...|+.+.|+|+.+++++-+.+....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998888777663 4778899999999999999988888888776643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=135.30 Aligned_cols=272 Identities=18% Similarity=0.203 Sum_probs=179.5
Q ss_pred EEEEecCC--CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC---CCCEE
Q 016187 79 LVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP---GGGVE 153 (394)
Q Consensus 79 ~lasg~~d--~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~---~~~v~ 153 (394)
|+|-.+.+ +.+++.++..+..+..+. -..+|.+|.++. ++|+.+-.+ .|.|||+++.+.++++... ...+.
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 44444433 447788887766665554 345788888865 467766655 4999999999999887643 33455
Q ss_pred EEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc-EEEEcCCCCceEEEEc
Q 016187 154 WVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIR 230 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~ 230 (394)
++++++.+.+++--+ ..|.|.+||..+.+....+..|.+++.+++|+++|.+|||++..|+ |||+.+.+|+.+..++
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 555555566776532 3689999999999999999999999999999999999999999998 6999999999998887
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE-CCCCCeEEEEeC-CCcEEEEeCC
Q 016187 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF-SRSSPWAATGSM-DQKLIIWDLQ 308 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~-~~~~~~l~s~s~-dg~i~iwd~~ 308 (394)
.... ...|.+++|+|++++|.+.+..++|++|.+.... ... ...+-....+ .+-.+. +++-. .+....||..
T Consensus 214 RG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~-~~~---~~~p~~~~~~~~~~sk~-~~sylps~V~~~~~~~ 287 (391)
T KOG2110|consen 214 RGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS-NNP---PESPTAGTSWFGKVSKA-ATSYLPSQVSSVLDQS 287 (391)
T ss_pred CCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc-cCC---CCCCCCCCcccchhhhh-hhhhcchhhhhhhhhc
Confidence 5433 4568899999999999999999999999987543 111 1100000000 000000 00000 1112234544
Q ss_pred CCCcceeccCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCeEEEEeecc
Q 016187 309 HSLPRSTCDHED--GVTCLMWLGTSKYVVTGCVDGKVRVWDSL--SGDCVRTFSGH 360 (394)
Q Consensus 309 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h 360 (394)
............ .+..+.-.+..+++..++.||.++.|.+. +|.....++.|
T Consensus 288 R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 288 RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 332222222122 23333333577899999999999999753 34444444434
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=151.25 Aligned_cols=295 Identities=19% Similarity=0.276 Sum_probs=219.5
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD--GQLLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~v 133 (394)
...|.+|.+.|+.|.|.. .+.+|+|||.|..+.+||...+.....+ .||...|....|-|. .+.+++++.||.|++
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 334678999999999986 5789999999999999999887766554 579999999999884 367999999999998
Q ss_pred EeCC-CCce--EEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeee---ecccCc---CeEEEEECCCC
Q 016187 134 WDPS-SGNL--KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM---FSGHGS---SVTCGDFTPDG 203 (394)
Q Consensus 134 wd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~---~~~h~~---~v~~~~~~~~~ 203 (394)
=.+. ++.+ ...+..|.++|..++.-|... .|++++.|+.+.-+|++....... -..+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7654 3332 234567889999999999764 689999999999999876432211 122222 45678888854
Q ss_pred -CeEEEEeCCCcEEEEcCCCCce------EEEEcCCC---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C---
Q 016187 204 -KTICTGSDDATLRVWNPKSGEN------IHVIRGHP---YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT--G--- 268 (394)
Q Consensus 204 -~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~---~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~--- 268 (394)
..+++++.|..+|+||.+.-.. +..+..+. -..-.|+|++++.++.-++++..|-.|+++.-.- |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4899999999999999865321 12221111 1223599999999999899999999999995321 2
Q ss_pred -------cEEEE-eccCCCC--EEEEE-ECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEE
Q 016187 269 -------KVVSS-LVSHTDS--IECIG-FSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 269 -------~~~~~-~~~h~~~--i~~v~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s 336 (394)
..+.. +++|... |..+- |.|...|+++||.-|.|.||+-.+....... +-...|+|+.-+|.-..||+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 22233 5677543 55554 5789999999999999999997766444332 33337999999999999999
Q ss_pred EeCCCeEEEEECCCCe
Q 016187 337 GCVDGKVRVWDSLSGD 352 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~ 352 (394)
.+.|..||||...+.+
T Consensus 454 SGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTAE 469 (559)
T ss_pred cCCccceeeecCCccc
Confidence 9999999999764433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=147.98 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=186.7
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEE----c----CCCCEEEEEeCCCcEEE
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF----S----MDGQLLASGGLDGLVQI 133 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~----s----~~g~~l~t~s~d~~i~v 133 (394)
.|+.-|.++.|..+..-+ ..+.|..+.+|.-.+.+....+.-..+.|....+ + .....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~--~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIY--FVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEE--EeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 466777888888755433 3456777777764333322222222222211111 0 12247888999999999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-...- ...+.....+|.|++|.|+.+.++-+.. +
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 86 5677777888899999999999999999999999999999865432 2233345678999999998776655433 4
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
.+.+=-+.-+..+..++. |.+-|.++.|++.+.++++|++|-..++||. .|+.+.+-..|.-+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRA---HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEec---cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cce
Confidence 454444444444444554 5677899999999999999999999999996 56677777789999999999999 555
Q ss_pred EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 294 ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
+.+|. +++++ .....+.|..++|++||..++.|+..|.+.+=
T Consensus 242 ~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 242 LLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 55542 33442 11224568899999999999999999987653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-19 Score=153.67 Aligned_cols=266 Identities=17% Similarity=0.289 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
.-+.+.++.+|++|+.|+.-|.|..+|..++++.+.+.- ...|..+.|..+..++++ .+...+++||-...+ +..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~GtE-lHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV-AQKKYVYVYDNNGTE-LHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh-hhhceEEEecCCCcE-Eeehh
Confidence 346789999999999999999999999999998877653 356888888887776655 567889999976443 44444
Q ss_pred ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.| ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+.. ..+.+..+.-+|-+..+-+|...|+|.+|.....
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 44 4678899999988999999999999999999987766543 2445777888999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD- 347 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd- 347 (394)
.++..+..|.++|.++++.++|.|+||.+.|..++|||++............+...+++|..+ +++.+....|.||.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999999999999999999999999999999999999876433222223456667776554 34455667899994
Q ss_pred CCC--CeEEEEeecc--cCceeEEEEccCCCEEEEEeCCC
Q 016187 348 SLS--GDCVRTFSGH--RDAIQAISVSAHQDFLVSVSLDG 383 (394)
Q Consensus 348 ~~~--~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~dg 383 (394)
... +.+...+-.| .++|..|.|.|-...|-.|-.-|
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 222 2222223333 35889999998777665544433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-18 Score=149.51 Aligned_cols=238 Identities=22% Similarity=0.318 Sum_probs=168.0
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCC--CCEEEEecCCCeEEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMW 176 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw 176 (394)
...|.||++.|.|+.|+.+|.+|++||.|-.+.|||....++++.+ .+|.+.|.+++|-|. +.++++|+.|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3578999999999999999999999999999999999888877765 589999999999995 4589999999999999
Q ss_pred eCCc----------cceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEE-------EcCCCCcccC
Q 016187 177 NADR----------AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHV-------IRGHPYHTEG 238 (394)
Q Consensus 177 ~~~~----------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~ 238 (394)
|+.. ......+..|...|..++-.|++ +.+.+++.||+||-+|++....... +...-...-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9874 23345677899999999999988 7899999999999999986421110 0000001124
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc---CC----CCEEEEE-ECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 239 LTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVS---HT----DSIECIG-FSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 239 i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~----~~i~~v~-~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
..|+.++|.. .+|++|+.|--.++||.+.. +..+.. +. .+..|+. |+|... ...+|.+.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~------ 270 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD------ 270 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCcccccc------
Confidence 6789999964 68889999999999996432 111111 11 1111221 223211 01111100
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 356 (394)
.....++-+.|+|+|.-|+..-..-.|+++|+..++....
T Consensus 271 -------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 -------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0111256678999998777665566899999987765543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=134.11 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=166.7
Q ss_pred eeee-ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-----CC----EEEEEeC
Q 016187 58 HIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-----GQ----LLASGGL 127 (394)
Q Consensus 58 ~~~~-~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-----g~----~l~t~s~ 127 (394)
..+. .|...|+.+.--|.+ -+.|-|.|.++.+|++.-+.++. .|.-.+.++.|.+. ++ .++.-+.
T Consensus 49 ~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~r 123 (323)
T KOG0322|consen 49 PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR 123 (323)
T ss_pred hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCc
Confidence 3344 577888888888853 46788999999999997755433 24444555555432 11 1111110
Q ss_pred CC-cEEEEeCCCCceEEEEe----cCCCCEEEEEEcCC-CC--EEEEecCCCeEEEEeCCccc----------eeeeecc
Q 016187 128 DG-LVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPR-GH--IVLAGSEDSTVWMWNADRAA----------YLNMFSG 189 (394)
Q Consensus 128 d~-~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~--~l~~~s~d~~i~iw~~~~~~----------~~~~~~~ 189 (394)
.. .+.+-|......+.... ...+.+.+..+... +. ++++|.++|.+.+||+.++. .......
T Consensus 124 gsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 124 GSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred ccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 00 01111211111111111 12345666664332 32 56888899999999998862 2333456
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
|..+|.++.|.+.-..=++|+.+..+..|.+.... .+..-..+.....++..+.+-||++++++++.|+.|++|+.++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 89999999998866666888888899999875431 11110111112346778899999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
+++..+..|.+.|++++|+|+..++|.++.|++|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=148.39 Aligned_cols=247 Identities=19% Similarity=0.266 Sum_probs=169.9
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-----CeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-----~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+-.|...|..++.++.++.+|+|||.||+|++|+... +.... ++.-....+.++...+.|..+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 4468889999999887778999999999999999753 22222 2332356789999999999999999999999
Q ss_pred EEeCCCCce--E-E----E--EecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCccceeeee--cccCcCeEEEEE
Q 016187 133 IWDPSSGNL--K-C----T--LEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDF 199 (394)
Q Consensus 133 vwd~~~~~~--~-~----~--~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~~--~~h~~~v~~~~~ 199 (394)
+.++...+. . . . .......|..-+|.. ....++.+..-+.|..||++.......+ ....+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 998765221 1 1 1 111222222233332 2347788888899999998765433222 233567999999
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---CCEEEEE-e-CCCcEEEEECCCCcEEEEe
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---STLALSG-S-KDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~g-~-~dg~i~i~d~~~~~~~~~~ 274 (394)
+|.+.+++.|+..|.+.+||++=+..+..+. ++. ..+++.+..+|- ....+++ + ..+-|.+|++.+|.....+
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeeccc-Ccc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 9999999999999999999998776665544 232 355666666653 2344444 4 5778999999988655544
Q ss_pred ccC--------CCC-----------EEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 275 VSH--------TDS-----------IECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 275 ~~h--------~~~-----------i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
... ..+ ....++..-+.++.+|+.|..|+.||..
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 322 111 1122334446789999999999999964
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=132.06 Aligned_cols=298 Identities=15% Similarity=0.139 Sum_probs=188.2
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd 135 (394)
...+......-..+.++|++ +++...+.|+.+.++|+.+.+.+.+++.-. ...++++|+||++++++. ..+.+.++|
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 34444333333346788864 455556789999999999999998887544 457899999999988775 689999999
Q ss_pred CCCCceEEEEec-------CCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeE
Q 016187 136 PSSGNLKCTLEG-------PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 136 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l 206 (394)
..+.+.+..+.. ....+..+..+|....++..- ..+.|.+.|....+.+. .............|+|+++++
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 999988877653 234567777788888555544 45888888876544332 222234456678999999987
Q ss_pred EEE-eCCCcEEEEcCCCCceEEEEcC-CCCcccCeEEEEEcCC----------CCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 207 CTG-SDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 207 ~s~-~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~----------~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
+.+ ..+..|-++|.++++....+.. ...|..+...+ .+|. +...++.-....+.+|+..+.+.+.++
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 654 5567899999998877665532 22222233222 1222 222222223345567888899999998
Q ss_pred ccCCCCEEEEEECCCCCeEEEE----eCCCcEEEEeCCCCCcceeccC--CCCEEEEEEeCCCCEEEEEeC--CCeEEEE
Q 016187 275 VSHTDSIECIGFSRSSPWAATG----SMDQKLIIWDLQHSLPRSTCDH--EDGVTCLMWLGTSKYVVTGCV--DGKVRVW 346 (394)
Q Consensus 275 ~~h~~~i~~v~~~~~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~--dg~i~iw 346 (394)
.....+ ..+..+|+++++... ...++|.++|.++......+.. ...+..+.|+++|+++..... +|.|.+|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 876666 778889999999887 4558999999987644433322 234889999999997766544 4469999
Q ss_pred ECCCCeEEEEee
Q 016187 347 DSLSGDCVRTFS 358 (394)
Q Consensus 347 d~~~~~~~~~~~ 358 (394)
|..|.+.++++.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999999887
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=137.38 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=209.4
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcc--cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~--~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
+|...-+.|..+|++.+++|||-.--.|++||+.+..+ .+.-|. +.|.-.-++-|-..++---.|.+|-+.... |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 46777889999999888999999999999999876543 344454 456666667676666666778887775422 2
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
. ...+.-+ ..-..++++.-..-|+.++....|+-++++.+..+..+....+.++++..++-..+|++|+.+|.|..||
T Consensus 126 ~-hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 R-HYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred e-eeeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2 1122211 1223456664444455666667899999999999998888889999999999999999999999999999
Q ss_pred CCCCceEEEEcCCC---Ccc-----cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCCEEEEEECCCC
Q 016187 220 PKSGENIHVIRGHP---YHT-----EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIGFSRSS 290 (394)
Q Consensus 220 ~~~~~~~~~~~~~~---~~~-----~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~v~~~~~~ 290 (394)
+++...+..+.... .+. ..|+++.|+.+|-.+++|..+|.+.|+|+++.+++..- ....-+|..+.|.+..
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 99877665554221 122 24899999999999999999999999999998876432 2345678889997763
Q ss_pred --CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 291 --PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..++|. ....++|||-.++.+.........++-+++.|++.++++|-.++.+..|=+
T Consensus 284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred CCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 344443 345689999888777776667777889999999999999998888776643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-15 Score=125.18 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=187.9
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC---
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG--- 139 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~--- 139 (394)
-.+..++||+ .-.-+|.+..|.+|++|+-.. +....++. -...|+|++|-|.+ ..|+.|... -|.+|.....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 4678899998 455688999999999999766 44445543 34679999999976 456666654 5999975421
Q ss_pred -ce----------EEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE
Q 016187 140 -NL----------KCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 140 -~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
+. +...++| -+|++++|++++..+++++- |..|.+||..++..+.......+.++-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1111233 58999999999999998884 67999999998877666544556778899999999999
Q ss_pred EEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 208 TGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
.+.-|+..++|+.... .+..-. .....+...+|+|+|++++..... .-+++. +.|
T Consensus 255 aAt~davfrlw~e~q~wt~erw~----lgsgrvqtacWspcGsfLLf~~sg-sp~lys-------------------l~f 310 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI----LGSGRVQTACWSPCGSFLLFACSG-SPRLYS-------------------LTF 310 (445)
T ss_pred Eecccceeeeehhcccceeccee----ccCCceeeeeecCCCCEEEEEEcC-CceEEE-------------------Eee
Confidence 9999999999964322 111111 123478889999999987655432 222222 223
Q ss_pred CCCCCeEE-EEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCe--------EEEEECCCCeEEEE
Q 016187 287 SRSSPWAA-TGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGK--------VRVWDSLSGDCVRT 356 (394)
Q Consensus 287 ~~~~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~--------i~iwd~~~~~~~~~ 356 (394)
+.....+. .++.-..+.+-|+..... .......++..+++|.|.|.|||+--..+. |.+||.+..-.+.-
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 22211111 222222233344432100 001112356789999999999998765443 67787654433322
Q ss_pred e-ecc--cCceeEEEEcc---CCCEEEEEeCCCcEEEEec
Q 016187 357 F-SGH--RDAIQAISVSA---HQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 357 ~-~~h--~~~v~~l~~~~---~~~~l~s~s~dg~i~iw~~ 390 (394)
. -|- ...-.-+.|+| ++.+|..+=.-|.+.-|.+
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 1 111 11123455654 4556666666788877765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=132.48 Aligned_cols=260 Identities=16% Similarity=0.225 Sum_probs=187.4
Q ss_pred CcEEEEEEcCCCC-cEEEEecCCCeEEEEEcCCCeeeEee------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 65 DEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWASEI------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 65 ~~v~~~~~~p~~~-~~lasg~~d~~v~~w~~~~~~~~~~~------~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
+.|..++|..++. ..+...+.|..+....++...+...+ ..-+++|..++... ..|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEecc
Confidence 4556666654332 24444446666666666655544432 34466777776542 367788899999999987
Q ss_pred CCce----EEEEecCCCCEEEEEEcCCCC-EEEEecCC--CeEEEEeCCccceeeeec-------cc--CcCeEEEEECC
Q 016187 138 SGNL----KCTLEGPGGGVEWVSWHPRGH-IVLAGSED--STVWMWNADRAAYLNMFS-------GH--GSSVTCGDFTP 201 (394)
Q Consensus 138 ~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d--~~i~iw~~~~~~~~~~~~-------~h--~~~v~~~~~~~ 201 (394)
.+.. +..+. ...++..+.-++... ++++|+.. ..+.+||+++.+.+..-+ +- .-.++.+.|.+
T Consensus 134 ~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 5542 22222 224566666677655 45668888 899999998774332211 11 12356788988
Q ss_pred C--CCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccC
Q 016187 202 D--GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSH 277 (394)
Q Consensus 202 ~--~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h 277 (394)
. ...||+++.-+.||+||++.++. +..+ .+...+++++...|.++++++|..-|.+..||+++++.+.. +.+-
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 7 78999999999999999987653 2233 34567899999999999999999999999999999998877 8888
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
++.|.++..+|..+++|+++.|..++|+|+++......+.-...++++.+.++
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999999999999999999999999999998655554444555677766544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-15 Score=126.23 Aligned_cols=274 Identities=19% Similarity=0.321 Sum_probs=194.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
+.|..|.|.-+.-..|.....|+.|++|++...++-..+..-.+++.+++|||||+ .|.+...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 56777888875556778888999999999999999999998899999999999996 55677789999999998766542
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecC------------------------------------CCeEEEEeCCccceeeee
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSE------------------------------------DSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~------------------------------------d~~i~iw~~~~~~~~~~~ 187 (394)
++.+...+..++|+|+|++.+.++. +..+.+||.--.- +.+
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~ 205 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVY 205 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh--eee
Confidence 3445556778889998887654432 1123334321111 111
Q ss_pred ccc-CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE----------------------------------------
Q 016187 188 SGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---------------------------------------- 226 (394)
Q Consensus 188 ~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------- 226 (394)
..| +-.+..++|+|.+++|+.|+.|+.+|+-+-.+-+..
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 223 246778899999999999999999998653221100
Q ss_pred --------------------EEEc---CCCCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeccCCCCE
Q 016187 227 --------------------HVIR---GHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKVVSSLVSHTDSI 281 (394)
Q Consensus 227 --------------------~~~~---~~~~~~~~i~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~h~~~i 281 (394)
+.++ ..+....++.-++|++|..++++-... ..+.+||++..++.. ......+|
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccce
Confidence 0000 000112245668999999998886543 578999998776433 33356799
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
.+..|+|..+.|+.+....++.+|..........-.....|..+.|..+|..++..+.|.-
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999999999999988888899998876443333344466889999999998888777753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-16 Score=126.98 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=172.8
Q ss_pred ccCCcEEEEEEcCCC----CcEEEEecCCCeEEEEEcCCCeee----Eee-----cCcccCEEEEEEcC-CCCEEEEEeC
Q 016187 62 GHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQGDWA----SEI-----QGHKDSVSSLAFSM-DGQLLASGGL 127 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~----~~~lasg~~d~~v~~w~~~~~~~~----~~~-----~~h~~~V~~v~~s~-~g~~l~t~s~ 127 (394)
.|.-+++.+.|.|+. ..+|||.| ..+|+|.+...+.. ..| ..+..++++..|+. +-+++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 577789999999953 46888754 68999998743211 112 23567899999986 5578999999
Q ss_pred CCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEEC
Q 016187 128 DGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFT 200 (394)
Q Consensus 128 d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~ 200 (394)
|-+..|||+.++. +...+-.|...|..++|...+ ..+++.+.||.+|++|++.......+ .....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 356678899999999999865 48899999999999999876543322 1224567788888
Q ss_pred C-CCCeEEEEeCCC-cEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE------
Q 016187 201 P-DGKTICTGSDDA-TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------ 270 (394)
Q Consensus 201 ~-~~~~l~s~~~dg-~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~------ 270 (394)
+ |-+++|+-..|. .|.+-|++... .+..+++ |...|+.++|.|. ...+.+++.|....+||+.+.-.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 7 556788766654 58999998754 3444554 5678999999996 46889999999999999976421
Q ss_pred EEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEE
Q 016187 271 VSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLII 304 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~i 304 (394)
+.... -...|+.++|++. +.+++.+. ++++.|
T Consensus 329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 11122 3567999999965 55777664 334433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=136.29 Aligned_cols=234 Identities=15% Similarity=0.093 Sum_probs=158.1
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+++||....+. ..+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++.... ....+.+...+|+|+|+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3688888765543 34445677899999999999988654 245799999988865432 222233456899999997
Q ss_pred EEEe-cCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-CcEEEE--cCCCCceEEEEcCCCCccc
Q 016187 164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-ATLRVW--NPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 164 l~~~-s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~vw--d~~~~~~~~~~~~~~~~~~ 237 (394)
|+.. +.++ .|++||+.+++..+.. .+...+....|+|+|+.|+..+.+ +..++| |+.+++.. .+.. ...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCC
Confidence 7654 4444 5889999887654443 334456788999999988776654 444454 66655432 2321 122
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc---EEEEeCCCCC
Q 016187 238 GLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK---LIIWDLQHSL 311 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~---i~iwd~~~~~ 311 (394)
......|+|+|+.++..+.+ ..|.+||+.+++.. .+.. ........|+|++.+++.++.++. +.++++....
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 34567899999988776543 35888999887643 3332 122346789999999999887764 6677776555
Q ss_pred cceeccCCCCEEEEEEeC
Q 016187 312 PRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~ 329 (394)
......|...+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 555555666777788876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-15 Score=134.07 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=193.2
Q ss_pred CcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 105 GHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+|...-+.|..+|||+|+ |||.+--.|++||+.+-.+. +..| ...|...-++.+-..++.--.|.+|.+-.-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999985 67888899999998765433 3322 233444444444333333344555544322111
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
-.-..++ ..-..+.++.-.--|+.++....|.-.++..|+-+..+.. ....++++.+++...++++|+.+|.+.
T Consensus 127 hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 127 HYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred eeeeecC---cCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCceEE
Confidence 1000011 1112334443222345555556688888888876655543 346799999999999999999999999
Q ss_pred EEECCCCcEEEEecc------CCC-----CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCC--CEEEEEEe
Q 016187 262 MVNITTGKVVSSLVS------HTD-----SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED--GVTCLMWL 328 (394)
Q Consensus 262 i~d~~~~~~~~~~~~------h~~-----~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~ 328 (394)
+||.+....+.++.. |.+ .|+++.|+.+|-.+++|...|.+.|||++...+.....|.. +|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999988766555432 333 49999999999999999999999999999887776666654 57788887
Q ss_pred CC--CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 329 GT--SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 329 ~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+. .+.|++ .....++|||-.+|+....+..- ..++.+++-|+.-+++++-.+..+..|=+..
T Consensus 281 ~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 281 DTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCCceEEe-cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 65 334444 34567999999999998888753 3499999999999999999988887776553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-14 Score=136.08 Aligned_cols=232 Identities=17% Similarity=0.119 Sum_probs=159.5
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec---CCCeEEEEeCCccceee--eecccCcCeEEEEECCCC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~ 203 (394)
..|.+||...+... .+..+...+...+|+|+|+.|+..+ .+..+++|++.+++... .+.++ +...+|+|||
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCC
Confidence 36888988755443 3444566789999999999887654 34579999998775432 23333 3457899999
Q ss_pred CeEEEE-eCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCcEEEEeccC
Q 016187 204 KTICTG-SDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GS--VHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 204 ~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-g~--i~i~d~~~~~~~~~~~~h 277 (394)
+.|+.. +.+| .|.+||+.+++...... ....+....|+|+|+.++..+.+ +. |.++|+.+++. ..+..+
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~ 329 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE 329 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence 988754 4455 48889998876543322 12346678999999988766653 44 55557766653 334334
Q ss_pred CCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe---EEEEECCCC
Q 016187 278 TDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK---VRVWDSLSG 351 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~---i~iwd~~~~ 351 (394)
........|+|++.+++..+.+ ..|.+||+.+........ ........|+|++++|+.++.++. ++++++ +|
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 4455678899999998876543 357889987664433221 122345679999999999887764 677776 57
Q ss_pred eEEEEeecccCceeEEEEcc
Q 016187 352 DCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~ 371 (394)
+..+.+.+|.+.+...+|+|
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCeEECccCCCCcCCcccCC
Confidence 77778888888898899987
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=136.09 Aligned_cols=242 Identities=20% Similarity=0.247 Sum_probs=159.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE------EEecCCCCEEEEEE-----cCCCCEEEEecCCCeEEEEe
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC------TLEGPGGGVEWVSW-----HPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~------~~~~~~~~v~~~~~-----~~~~~~l~~~s~d~~i~iw~ 177 (394)
.++...++-.|.+|+-. ....+.+|+...+..++ .+.+. ...+-.| .|.+.-++.|-.-|.+.+.+
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEec
Confidence 34555556667666433 23468888876442221 12222 2223333 34556788888889999988
Q ss_pred CCccceeeeecc----cCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 178 ADRAAYLNMFSG----HGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 178 ~~~~~~~~~~~~----h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
....+..+.+.. ....|+|+.|.|. ...++.+..+|.+.+||..-. .+. .. .+-...+++..+.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~----t~-p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA----TA-PSYQALKDGDQFA 270 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC----CC-CcccccCCCCeeE
Confidence 765443332221 2478999999994 456677788999999986211 000 00 0111223343333
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTS 331 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~ 331 (394)
....-+ ..+..++....--...|+..+|+||+++||+.+.||.++|||..+....... ..-.+..|++|+||+
T Consensus 271 i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 271 ILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred Eeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence 221111 1111334444334568999999999999999999999999998764333221 234578999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
+||++|+.|..|.||....++.+.+=.||+..|..|+|.
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999999999999997
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-16 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=163.3
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG- 268 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~- 268 (394)
-..+|+|-+|++|+..+|.+-....|.||.....+..........|...++.+.|+|..+.+++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3568999999999999999999999999998776633333333346778999999999999999999999999998443
Q ss_pred --cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-----eccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 269 --KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-----TCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 269 --~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
++.-.+..+....++|.|+|....+|+||....|.+|-......-. ...+...|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3344456688899999999999999999999999999876543221 223456789999999999999999999
Q ss_pred eEEEEECC------------------CCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 342 KVRVWDSL------------------SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 342 ~i~iwd~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.++|..- -|++..++....+.|..+.|+|.|..|+-.+.|.++.+=|-.
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999641 133444555567789999999999999999999999886643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-14 Score=117.30 Aligned_cols=274 Identities=18% Similarity=0.299 Sum_probs=179.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCC------CeEEEEeCCccc
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSED------STVWMWNADRAA 182 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d------~~i~iw~~~~~~ 182 (394)
..+++|+.|..-++.|..+| .+||+.+.-+.....+...+.+.-+..--..++| +.|+.+ +.+.|||-...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999998888887666 8999987643322222222222222222223444 444443 579999976666
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC-CCceEEEEcCCCCcccCeEEEEEcCCCCEEEE-EeCCCcE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSV 260 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-g~~dg~i 260 (394)
++..+. ...+|.++.+.++ .++.. ....|.||... ..+.++.+.... ...++.+++-..+..+|+. |-.-|.|
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEEEcCCCccceE
Confidence 666553 4678999988865 34443 35789999987 345555554322 2234444443333334433 5566999
Q ss_pred EEEECCCCcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCc-EEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEE
Q 016187 261 HMVNITTGKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQK-LIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 261 ~i~d~~~~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l 334 (394)
+|.|+...+. ...+.+|...|.|++++.+|..+||+|..|+ |+|||..++...... .....+.|++|+|+..+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 9999987654 3667899999999999999999999999998 689999876544332 234569999999999999
Q ss_pred EEEeCCCeEEEEECCCCe---E-----------E-E---------EeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 335 VTGCVDGKVRVWDSLSGD---C-----------V-R---------TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~---~-----------~-~---------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++|..|+|.||.++... . + + .+.--.+..--++|..+.+.++..+.||+-+-+.
T Consensus 242 avsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 999999999999875422 1 0 0 1111123344566776656777777787655443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=138.20 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=156.3
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+++||....+ ...+..|...+.+.+|+|||++|+..+.. ..|.+||+.+++... +....+.....+|+|+++.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468889985443 44566677889999999999999887743 469999998886543 2333344557899999986
Q ss_pred EE-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CCc--EEEEcCCCCceEEEEcCCCCccc
Q 016187 164 VL-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DAT--LRVWNPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 164 l~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~ 237 (394)
++ +.+.++ .|++|++.+++.. .+..+.......+|+|+|+.|+.++. +|. |.++|+.+++.. .+.. ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~---~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF---QGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec---CCC
Confidence 64 445555 6999999877643 34455555567899999998887664 444 666677666532 2221 112
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCC
Q 016187 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSL 311 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~ 311 (394)
.....+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|+|++++++..+.+ +.|.++++....
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 234678999999988765433 6999999887654 333 32344567899999987776653 357777776544
Q ss_pred cceeccCCCCEEEEEEeC
Q 016187 312 PRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~ 329 (394)
......+...+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 333333344455566665
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-15 Score=124.97 Aligned_cols=185 Identities=19% Similarity=0.335 Sum_probs=136.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcc----
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA---- 181 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~---- 181 (394)
-.++.++|++.-..+|++..|-.|++|+-+. +....++ ..+..|++++|-|.+. .|+.|+ -+-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3477899999767789999999999999776 3333443 3456899999999765 455554 466889976421
Q ss_pred ce----------eeeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 182 AY----------LNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 182 ~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
.. +...++| .+|++++|.+||..+++++. |..|.|||+.+++.+... +....+++-+.||||+.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCE
Confidence 11 1123455 68999999999999998876 567999999998876543 224567889999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
++++.-|+..++|+.........-.-..+.|....|+|.|++|+....
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 999999999999976544322222234458899999999998765543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-17 Score=140.69 Aligned_cols=229 Identities=16% Similarity=0.260 Sum_probs=190.5
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
+...+.++.+|.+++.|+..|.+-.+|..++++...+.. ...|.++.|..+.+++|.+ +...+.||| ..|..+++++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 345688999999999999999999999999887776643 3467788888777776665 567899999 4578888887
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+ ..+..+.|-|---+|++++..|.++.-|+.+|+++..+....+.+..+.-+|-...+-+|...|+|.+|.....
T Consensus 208 ~~----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hc----CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 53 45778889898888999999999999999999999988888888999999999999999999999999998766
Q ss_pred Ccc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 311 LPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 311 ~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.+. ....|..+|.++++.++|+|.+|.+.|..++|||++....+.++.. .-+...++||..| ++.+|....|.||.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 554 3456899999999999999999999999999999999887777665 4456788888644 45566666788884
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=135.09 Aligned_cols=235 Identities=20% Similarity=0.241 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+.+||.. +.....+..+...+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.....+|+|+++
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred ccEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 4567777764 44445566788899999999999999877643 359999999887543 333345566889999998
Q ss_pred EEE-EecCCCeEEEE--eCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcC--CCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNP--KSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~~i~iw--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++...+| ++..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++. ..+.. ..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TG 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CC
Confidence 775 56777765555 454444 3444445555566789999998876554 466666654 34432 22221 11
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-c--EEEEeCCCC
Q 016187 237 EGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ-K--LIIWDLQHS 310 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg-~--i~iwd~~~~ 310 (394)
.......|+|+|++++..+.++ .|.+||+.+++.. .+... .......|+|++++|+..+.++ . +.+.++...
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 2233568999999988776554 6999999887644 33322 3346789999999888776544 2 444455333
Q ss_pred CcceeccCCCCEEEEEEeC
Q 016187 311 LPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~ 329 (394)
.......+...+...+|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 2222223344455566665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=136.23 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=158.3
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.+||...+. ...+..+...+...+|+|+++.|+..+. ...|++|++.+++... +........+.+|+|+|+.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468899986443 3445556677889999999998887763 3479999998776433 2233334456799999997
Q ss_pred EE-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGS--VHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~--i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.+| .|.+||+.+++.. .+..+ .......+|+|+++.++..+ .+|. |.++++.+++.. .+..+..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~---~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNH---FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC
Confidence 75 455555 5999999887643 23222 22345678999999887665 3444 777787776533 2322333
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~ 353 (394)
.....+|+|++++++..+.++ .|.+||+.....+.. .+........|+|++++|+..+.+ +.|+++++. +..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~ 414 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRV 414 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc
Confidence 445689999999988765443 589999876654432 233234456899999988876653 468888874 555
Q ss_pred EEEeecccCceeEEEEcc
Q 016187 354 VRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~ 371 (394)
.+.+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666766667777778876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-14 Score=132.79 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=156.6
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+++||.... ....+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+....+.+...+|+|+|+
T Consensus 181 ~~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred ceEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 347888887544 44556778889999999999999887764 468999999888654 3444556677889999998
Q ss_pred EEE-EecCCCe--EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~~--i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++. |++|++.++... .+..+........|+|||+.|+..+. +| .|.+||+.+++. ..+.. ..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~---~~ 333 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISF---GG 333 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeec---CC
Confidence 764 5555554 777788877653 34455555667899999998887664 33 578888766543 33321 12
Q ss_pred cCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEeC
Q 016187 237 EGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD------QKLIIWDL 307 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d------g~i~iwd~ 307 (394)
.......|+|+|+.++..+.+ ..|.+||+..+.. ..+. ....+....|+|++++++..+.+ ..+.++|+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 335567899999998876543 3688889865543 3332 22356778999999988765543 25777777
Q ss_pred CCCCcceeccCCCCEEEEEEeC
Q 016187 308 QHSLPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~~~~~ 329 (394)
........ .....+...+|+|
T Consensus 412 ~g~~~~~l-~~~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNEREV-PTPGDASDPAWSP 432 (435)
T ss_pred CCCceEEc-cCCCCccCcccCC
Confidence 65433322 1223344455655
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-15 Score=126.28 Aligned_cols=236 Identities=18% Similarity=0.223 Sum_probs=167.3
Q ss_pred CEEEEEEcCCCC--EEEEecCCCeEEEEeCCccceee------eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 151 GVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLN------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 151 ~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
.+..++|..++. .+...+.+..+..+......+.. ...+...+|..++.. ...|++|-.+|.+.+|..+.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccC
Confidence 344455544332 34444455555555544333222 223334455544432 34788889999999999874
Q ss_pred Cc----eEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCcEEEEeccC---------CCCEEEEEE
Q 016187 223 GE----NIHVIRGHPYHTEGLTCLTISADST-LALSGSKD--GSVHMVNITTGKVVSSLVSH---------TDSIECIGF 286 (394)
Q Consensus 223 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~d--g~i~i~d~~~~~~~~~~~~h---------~~~i~~v~~ 286 (394)
+. .+..+.. ..++..+.-++... ++++|+.. ..+++||+.+.+.+.+-..- .-+++++.|
T Consensus 135 ~d~hss~l~~la~----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 135 GDLHSSKLIKLAT----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred Cccccccceeeec----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 43 1222221 13455555555444 55558888 78999999988766554321 225678889
Q ss_pred CCC--CCeEEEEeCCCcEEEEeCCCCC-cceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eeccc
Q 016187 287 SRS--SPWAATGSMDQKLIIWDLQHSL-PRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT-FSGHR 361 (394)
Q Consensus 287 ~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~ 361 (394)
-+. ...||+++.-+.+++||+++.. +...+ ..+.+++++...|.+++|++|..-|.+..||.+.++.+.. |.|..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 7789999999999999998642 22222 3467899999999999999999999999999999999887 89999
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 362 DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 362 ~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.|.++..+|.++++|+||.|+.+||+|+++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999999999876
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=137.78 Aligned_cols=136 Identities=25% Similarity=0.415 Sum_probs=115.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------------Ceee--------------EeecCcccCEEEEEEc
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------GDWA--------------SEIQGHKDSVSSLAFS 116 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------------~~~~--------------~~~~~h~~~V~~v~~s 116 (394)
..|+|+.|-|.+..++...-.++..++++.+. +... ..+.--.+.|...+||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 68999999997777777778889999997421 1110 1111124578899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEE
Q 016187 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (394)
Q Consensus 117 ~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~ 196 (394)
|||++||+.|.||.+||+|..+.+++..++.-.+...|++|+|||+++++|+.|--|.+|.+...+.+..-+||.+.|+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred EEEC
Q 016187 197 GDFT 200 (394)
Q Consensus 197 ~~~~ 200 (394)
++|.
T Consensus 380 VaFD 383 (636)
T KOG2394|consen 380 VAFD 383 (636)
T ss_pred Eeec
Confidence 9998
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=124.59 Aligned_cols=246 Identities=17% Similarity=0.326 Sum_probs=186.2
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
..+.+.++||.+.|+....-|...-+++.+.|.++|||- ...++.-..+ .....+++++.+++....|+.|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345567899999999999989888899999999999994 3334332222 22346788999999999999999999998
Q ss_pred EEeC----CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 175 MWNA----DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 175 iw~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
-+.+ +.....+.+..|...+..+-|+-..+++++.+.|..+.---.+.+..+.... .....+.+.+.- .+
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~----~~~~~t~~~~d~--~~ 167 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN----FETPASALQFDA--LY 167 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE----eeccCCCCceee--EE
Confidence 8865 4456677888999999999999888999999999988655455544332111 000111111111 15
Q ss_pred EEEEeCCCcEEEEEC--CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEE
Q 016187 251 ALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLM 326 (394)
Q Consensus 251 l~~g~~dg~i~i~d~--~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~ 326 (394)
...|...|.+....+ ....++.++.+|.+++.++.|.+....|.+|..|..+..||+-.. ......+|...|..+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 666777777666544 445678899999999999999999999999999999999998543 3344567888888888
Q ss_pred EeCCCCEEEEEeCCCeEEEEEC
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+.+--+.+++++.||.|-+|+.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhheeeeeccCCCeEEEEec
Confidence 8888889999999999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-14 Score=116.91 Aligned_cols=233 Identities=15% Similarity=0.246 Sum_probs=156.2
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCC------CcEEEEcCCCCc
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDD------ATLRVWNPKSGE 224 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d------g~i~vwd~~~~~ 224 (394)
...++|+.+...+++|. |.-.+||+.+--+....-+.+...+.-+...-..++|+ .|+.+ ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44589998877666654 55588998764322111111111111111111234444 33332 479999966666
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCC--CCEEEEEECCCCCeEEE-EeCCC
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHT--DSIECIGFSRSSPWAAT-GSMDQ 300 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~--~~i~~v~~~~~~~~l~s-~s~dg 300 (394)
++..+. ...+|..+.+.++--.++ ..+.|++|... +.+.++.+.-.. ....++.-..+..+||. |-.-|
T Consensus 87 ~i~el~----f~~~I~~V~l~r~riVvv---l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 87 CIIELS----FNSEIKAVKLRRDRIVVV---LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred EEEEEE----eccceeeEEEcCCeEEEE---ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 666554 345788888887643332 46789999987 445555543222 22333332333344544 34468
Q ss_pred cEEEEeCCCCCc---ceeccCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeec--ccCceeEEEEccCCC
Q 016187 301 KLIIWDLQHSLP---RSTCDHEDGVTCLMWLGTSKYVVTGCVDGK-VRVWDSLSGDCVRTFSG--HRDAIQAISVSAHQD 374 (394)
Q Consensus 301 ~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~ 374 (394)
.|+|-|+..... .....|...|.|++.+.+|..|||+|..|+ |||||..+|+.+.++.- ....|.+++|+|+..
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876544 455689999999999999999999999997 89999999999999873 345699999999999
Q ss_pred EEEEEeCCCcEEEEeccC
Q 016187 375 FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~~ 392 (394)
+||..|+-|++.||.+.+
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 999999999999999865
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-14 Score=131.89 Aligned_cols=235 Identities=15% Similarity=0.141 Sum_probs=154.1
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.++|.. |.....+..+...+...+|+|+++.|+..+.+ ..|++||+.+++.... ..........+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 467777764 44434455566788899999999988776643 4699999988765432 223344567899999998
Q ss_pred EE-EEeCCCcEEEEc--CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEE--CCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDATLRVWN--PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVN--ITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d--~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.+|...||. +..+. ...+..+ ........|+|||+.++..+. ++...+|. +.+++. ..+..+..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~---~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQS---SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCC---CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC
Confidence 86 567788766665 44333 3333322 223456789999998776553 45666664 444443 22222223
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---KVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~ 353 (394)
......|+|++++++..+.++ .|.+||+.....+.... ........|+|++++|+.++.++ .+++.++ +++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 344578999999998777654 59999987665443322 22345678999999988877544 3555566 5666
Q ss_pred EEEeecccCceeEEEEccC
Q 016187 354 VRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~~ 372 (394)
.+.+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 6677767777778888873
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-13 Score=120.89 Aligned_cols=315 Identities=12% Similarity=0.138 Sum_probs=208.1
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe-----CC-----CcEEEEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----LD-----GLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s-----~d-----~~i~vwd 135 (394)
+++..++++ +++++|- +.+..++|++....+.+.+...- .++++.|||-|.+|.|-- .+ -.+++|+
T Consensus 36 ~~~v~~~S~-~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSN-NGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcC-CCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 356677887 5677875 46688899998877543333322 689999999999987642 12 3577999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC--eEE-----E
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TIC-----T 208 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~-----s 208 (394)
+.++.....+......-+...|+++..+.+ =-..+.+.+|+....+.+. -.-|...++...++|.+. .+| .
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC
Confidence 998655544443222225778888775332 2234789999987643222 123677788889998633 333 2
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE-EEEEe-----------CCCcEEEEECCCCcEEEEecc
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL-ALSGS-----------KDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~g~-----------~dg~i~i~d~~~~~~~~~~~~ 276 (394)
.+.-+.||||.......-..+....+....-..+.|.+-|+- |+.++ ...+++++++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 456678999987632221111111122222334566665542 22222 23578888887444444443
Q ss_pred CCCCEEEEEECCCCCeEE--EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 016187 277 HTDSIECIGFSRSSPWAA--TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV---DGKVRVWDSLSG 351 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~--s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~ 351 (394)
-.++|.++.|+|++.-++ .|-+-.++.|||++.... .. --+++-+++.|+|.|++|+.++- -|.|-|||+.+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~d-f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FD-FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-Ee-CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 478999999999997554 456778899999875422 11 22455678899999999988775 488999999999
Q ss_pred eEEEEeecccCceeEEEEccCCCEEEEEeC------CCcEEEEecc
Q 016187 352 DCVRTFSGHRDAIQAISVSAHQDFLVSVSL------DGTARVFEIA 391 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iw~~~ 391 (394)
+++..+..-.. +-..|+|||++|+|+.. |+.++||+..
T Consensus 347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99988886443 45789999999998864 7889999853
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-13 Score=127.69 Aligned_cols=233 Identities=13% Similarity=0.061 Sum_probs=157.1
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.+||.... ....+..+...+...+|+|+++.|+..+. +..|++|++.+++.. .+..+...+...+|+|||+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47888887544 34456667788999999999998877653 468999999877643 34445556677899999998
Q ss_pred EE-EEeCCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.++. |.+||+.+++.. .+..+ ........|+|+++.++..+. +| .|+++|+..++. ..+..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~---~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDS---PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCC---CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence 75 5555655 777788876543 33322 223456789999998876653 33 688889876654 34433445
Q ss_pred CEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Q 016187 280 SIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD------GKVRVWDSLS 350 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------g~i~iwd~~~ 350 (394)
.+....|+|++++++..+.+ ..|.+||+.....+. ......+....|+|++++|+..+.+ ..++++++..
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 56678899999999877654 357888875543322 2222345678899999988765543 3578888765
Q ss_pred CeEEEEeecccCceeEEEEcc
Q 016187 351 GDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~ 371 (394)
+.. +.+.. .+.+...+|+|
T Consensus 414 ~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred Cce-EEccC-CCCccCcccCC
Confidence 544 45542 44456667765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-14 Score=115.15 Aligned_cols=154 Identities=18% Similarity=0.368 Sum_probs=109.4
Q ss_pred EEEEcCCCCcEEEEecC--C-------CeEEEEEcCC-CeeeEeecC-cccCEEEEEEcCCCCEEEEE--eCCCcEEEEe
Q 016187 69 SVACSPTDATLVATGGG--D-------DKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIWD 135 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~--d-------~~v~~w~~~~-~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~--s~d~~i~vwd 135 (394)
.+.|+|.+..+++.... | +...+|.++. +.....+.- ..++|.+++|+|+|+.||+. ..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 46789987776665541 1 1234454422 222333332 34579999999999987654 4667999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD- 211 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~- 211 (394)
+. ++.+..+. ...++.+.|+|+|+++++++. .|.+.+||.++.+.+.... | ..++.++|+|+|++|+++..
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence 96 55555553 567889999999999988764 4679999999887776654 3 34688999999999998864
Q ss_pred -----CCcEEEEcCCCCceEEE
Q 016187 212 -----DATLRVWNPKSGENIHV 228 (394)
Q Consensus 212 -----dg~i~vwd~~~~~~~~~ 228 (394)
|..++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 7788999974 555544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-12 Score=114.92 Aligned_cols=314 Identities=14% Similarity=0.148 Sum_probs=211.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC-------------
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG------------- 129 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~------------- 129 (394)
-.-++..+.+||.+ ++|++. .-..|.+|.......+..+. | ..|.-+.|||.+.||.|-+...
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~-~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSE-HAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehh-hccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 34567888999975 556653 34567899987766555554 3 4589999999999999987654
Q ss_pred --cEEEEeCCCCceEEEEecCCCC--EE-EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc---CcCeEEEEECC
Q 016187 130 --LVQIWDPSSGNLKCTLEGPGGG--VE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH---GSSVTCGDFTP 201 (394)
Q Consensus 130 --~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~ 201 (394)
.+.+||..+|..+..+.....+ .. -+.|+-+.+++|-- -...++++++ +.... ....+ ...+....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEEecC
Confidence 4999999999998887765544 33 57888888776544 3457888886 22111 11111 24566778888
Q ss_pred CCC--eEEE-----EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-----------CCCcEEEE
Q 016187 202 DGK--TICT-----GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KDGSVHMV 263 (394)
Q Consensus 202 ~~~--~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-----------~dg~i~i~ 263 (394)
.++ .||. ...++++++|.+..+..+..... ..-.-..+.|.+.|.+++.-- ....+.++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 543 3332 46678899998876654433211 111223467777777654311 13467888
Q ss_pred ECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-
Q 016187 264 NITTGKVVSSLVSHTDSIECIGFSRSSPWAATG--SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD- 340 (394)
Q Consensus 264 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d- 340 (394)
+++...+... ..-.++|...+|.|.+..+++. -.+..+.++|++... .....+..-+.+.|+|..++++.++-|
T Consensus 261 ~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 261 RITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred eeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccce--EEecCCcccccccccCcccEEEEecCCc
Confidence 8874332222 2457899999999998876554 478889999998762 233334455677899999999987765
Q ss_pred --CeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEe------CCCcEEEEecc
Q 016187 341 --GKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVS------LDGTARVFEIA 391 (394)
Q Consensus 341 --g~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s------~dg~i~iw~~~ 391 (394)
|.|-+||...... +..+.+-+. .-..|+||++++.+.- .|..|+||++.
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 7899999765544 446776443 3467999999988763 38899999975
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=135.32 Aligned_cols=272 Identities=18% Similarity=0.197 Sum_probs=188.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc-C------CCCEEEEecCCCeEEEEeC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH-P------RGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~------~~~~l~~~s~d~~i~iw~~ 178 (394)
|-.++.+.++-. .+|+.|+ --.|.+||..++..+..+.... .+.+| + .+.+++++..-..+..-+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~----~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSK----ILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhc----ccccccccccceeccceEEEEEeecceeecch
Confidence 334555555544 5665443 4579999999887654332211 11112 1 1234445444333332222
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC-cccCeEEEEEcCCCCEEEEEeCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
... ... .-...+....+..+.+.++.++.+..+-+||...+.....+..... ......-+..+++.-++++|+.-
T Consensus 79 ~~~-~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 79 SNQ-IIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhh-hhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 111 111 1223344455666778899999999999999876654433321110 00112223456777789999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
+.|.+|+....+.-..+.+|.+.|..+.++.++.++++.|.|.++++|++.+.... .-.+|..+|..++++|. +++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 99999998744433468899999999999999999999999999999999875433 45689999999999998 999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+++.|.+.++|+. .++.+..+.+|. ..|+.++..++...++|++.|+.+++|++.
T Consensus 233 t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 233 TVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999999954 566777899886 569999999999999999999999999865
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=113.24 Aligned_cols=148 Identities=17% Similarity=0.326 Sum_probs=106.2
Q ss_pred EEEEcCCCCEEEEecC----------CCeEEEEeC--Cccceeeeecc-cCcCeEEEEECCCCCeEEEE--eCCCcEEEE
Q 016187 154 WVSWHPRGHIVLAGSE----------DSTVWMWNA--DRAAYLNMFSG-HGSSVTCGDFTPDGKTICTG--SDDATLRVW 218 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~----------d~~i~iw~~--~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~--~~dg~i~vw 218 (394)
.+.|+|+|.+|+.-.. -+...+|-+ .... ...+.- ..++|.+++|+|+|+.||.. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4778888886654322 123444444 3322 333322 34579999999999987554 467899999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 295 (394)
|++ ++.+..+. ...+..+.|+|+|+++++|+. .|.|.+||+++.+.+.+.. | ..+..++|+|+|+++++
T Consensus 89 d~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 996 55555543 345778999999999999874 4679999999988887764 3 35789999999999998
Q ss_pred EeC------CCcEEEEeCCCC
Q 016187 296 GSM------DQKLIIWDLQHS 310 (394)
Q Consensus 296 ~s~------dg~i~iwd~~~~ 310 (394)
+.. |+.++||+....
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeccceeccccEEEEEecCe
Confidence 864 678889987643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-11 Score=107.61 Aligned_cols=262 Identities=13% Similarity=0.138 Sum_probs=173.7
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEecCCC------
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------ 150 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~----------d~~i~vwd~~~~~~~~~~~~~~~------ 150 (394)
+++.+.|..+++.+..+..-..+- .+ +||||+.|+++.. +..|.+||+.+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999888876433332 24 9999998877765 78999999999999888764322
Q ss_pred -CEEEEEEcCCCCEEEEec-C-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC-CceE
Q 016187 151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENI 226 (394)
Q Consensus 151 -~v~~~~~~~~~~~l~~~s-~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~ 226 (394)
....++++|+|++|+... . +..+-+.|+.+++.+..+.--.. ..-...+++. .+ +-+.||........+ |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCc-cE-EEeecCceEEEEecCCCceE
Confidence 223688999999888766 3 68999999999988877654221 1111122222 12 223445444332221 2111
Q ss_pred -E---EEcC--CCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----cEEEEecc-------CCCCEEEEEEC
Q 016187 227 -H---VIRG--HPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG-----KVVSSLVS-------HTDSIECIGFS 287 (394)
Q Consensus 227 -~---~~~~--~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~-------h~~~i~~v~~~ 287 (394)
. .+.. .+....+ .+.+ +++++++... |+|.+.|+... +.+..+.. ..+.+.-++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 0 0100 0000111 2344 8888888777 99999996443 23332211 12334459999
Q ss_pred CCCCeEEEEe----------CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEEECCCCeEEE
Q 016187 288 RSSPWAATGS----------MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 288 ~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iwd~~~~~~~~ 355 (394)
++++.+.... ..+.|.++|+.+........-...+..++++|+++ +|++.. .++.|.+.|+.+++.++
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9998877642 22579999998877666555566889999999999 777666 57889999999999999
Q ss_pred Eee
Q 016187 356 TFS 358 (394)
Q Consensus 356 ~~~ 358 (394)
++.
T Consensus 337 ~i~ 339 (352)
T TIGR02658 337 SVN 339 (352)
T ss_pred eec
Confidence 884
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-13 Score=114.02 Aligned_cols=244 Identities=20% Similarity=0.387 Sum_probs=166.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCC------------CCEEEEEEcCCCC--EEEE
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRGH--IVLA 166 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 166 (394)
..+-|.+|.|...|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999998643221 223333332 3578899998765 6777
Q ss_pred ecCCCeEEEEeCCcccee-----------------------------------ee-ecccCcCeEEEEECCCCCeEEEEe
Q 016187 167 GSEDSTVWMWNADRAAYL-----------------------------------NM-FSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~-----------------------------------~~-~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
...|.+|++|.+...... +. -.+|..-|.++.++.|++.++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 789999999986432100 00 13677788999999999988886
Q ss_pred CCCcEEEEcCCCC-ceEEEEcCCCC----cccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEE---E-e------
Q 016187 211 DDATLRVWNPKSG-ENIHVIRGHPY----HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVS---S-L------ 274 (394)
Q Consensus 211 ~dg~i~vwd~~~~-~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~---~-~------ 274 (394)
.|=.|.+|++.-- +....+...|. ...-|++..|+|. ...++-.+..|+|++-|++...+.- + +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 4778999998643 33332222111 1234777788885 5677888899999999998542210 0 1
Q ss_pred ------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcceec-cC------------CCCE---EEEEEeCCC
Q 016187 275 ------VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTC-DH------------EDGV---TCLMWLGTS 331 (394)
Q Consensus 275 ------~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~-~~------------~~~v---~~~~~~~~~ 331 (394)
..--..|..+.|+++|+|+++-+. -+|++||+.. ..+.... .| .+.| ..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 111246888999999999987643 5899999832 2222211 11 1122 457899999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 016187 332 KYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~ 351 (394)
.+++||+.....++++...|
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 99999999999999985433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-13 Score=128.06 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=127.0
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCC
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG 150 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~ 150 (394)
+++ ...++++|+.-+.+.+|+....+....+.||.+.|.++.|+-||+++++.|.|.++|+|++.+.+... +.-+|.+
T Consensus 141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 455 46789999999999999987544444689999999999999999999999999999999999988765 6678999
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
.+..+.|+|+ .+++++.|-+.++|..+..+ +..+.+|. ..+..++..++...++|++.|+.+++|+...
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999998 89999999999999766544 34677774 5688899999999999999999999999754
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=122.47 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=143.7
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+.++|....+ ...+..+...+.+.+|+|||++|+.++.. ..|++||+.+++.... ....+.+..++|+|+++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 4457778875443 34455677789999999999999877654 4799999998865432 33445566789999998
Q ss_pred EEE-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++ .|++|++.+++... +..+........|+|+|++|+..+. .+ .|.++|+.+++.. .+.. +.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~---~~ 321 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF---RG 321 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec---CC
Confidence 665 445444 58889988765433 3344444456789999998876654 33 5777888766543 2221 22
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeC
Q 016187 237 EGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ---KLIIWDL 307 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg---~i~iwd~ 307 (394)
.......++|++++++.++.++ .|.+||+.++... .+... .......|+|++.+|+..+.++ .+.+.+.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 3456678999999998887776 7899999876532 22222 2334568999999888776654 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=122.18 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=149.4
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEE--------------------cCCCCEEEEEeCCCcE
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--------------------SADSTLALSGSKDGSV 260 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~--------------------~~~~~~l~~g~~dg~i 260 (394)
|...++|....||.+|+|++..++....+.......+..++..| +.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999988766555432222333334333 2234577889999999
Q ss_pred EEEECCCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEE
Q 016187 261 HMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.++++..+++-..+. .|.+.|+++.++.+...+.|++.|..+..|+.+....... ......+.+++.+||+..|++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877765 5899999999999999999999999999999876543322 2345568889999999999988
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEccC-----CCEEEE-EeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH-----QDFLVS-VSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s-~s~dg~i~iw~~~ 391 (394)
+ +.|++||+.+++.+..|+||.++|.++.|... |.++++ ...+.-|.+|-+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 6 78999999999999999999999999999877 666554 4567778888654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-11 Score=112.25 Aligned_cols=299 Identities=16% Similarity=0.129 Sum_probs=185.3
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
.+..++.++.+.-+|..+++.+-...-.......+. .++..++.++.++.+..+|..+|+.+....... .+......
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v 143 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV 143 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE
Confidence 455567788999999988887654433222112222 246778888899999999999999876554322 22211111
Q ss_pred CCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE-ECC--CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc
Q 016187 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD-FTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~-~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (394)
.+..++.++.++.++.||.++++.+-.+........... -+| .+..++.+..++.+..+|+++|+.+.........
T Consensus 144 -~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred -ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 245677788899999999998876654433221111000 011 2346788888999999999998765433211000
Q ss_pred -cc---CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 236 -TE---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 236 -~~---~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.. .+..+.-+| .+..+++++.+|.+..+|+.+|+.+-..... ...... ..+..++.++.+|.+..+|..+
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 00 000000111 2457777888999999999999876554311 111111 2355777788899999999876
Q ss_pred CCcceec-cCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 310 SLPRSTC-DHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 310 ~~~~~~~-~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....... .... ...+... .+.+|++++.+|.|+++|..+|+.+.+++.+...+..--.-.+ +.|+.++.||.|..
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 6544322 1111 1111111 3568899999999999999999999988876654433222233 45778999998876
Q ss_pred E
Q 016187 388 F 388 (394)
Q Consensus 388 w 388 (394)
|
T Consensus 376 ~ 376 (377)
T TIGR03300 376 F 376 (377)
T ss_pred e
Confidence 6
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-12 Score=119.18 Aligned_cols=232 Identities=14% Similarity=0.116 Sum_probs=151.7
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.++|...++ ...+..+...+...+|+|+++.|+.++.. ..|++|++.+++... +..+...+.+.+|+|+|+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357888875443 34455566678889999999988776543 479999998775433 2334455667899999987
Q ss_pred EE-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.++ .|.+||+.+++.. .+..+ ........|+|+++.++..+. .+ .|.++++.+++.. .+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNG---PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCC---CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 76 444444 5888998876543 22221 122345689999998776554 33 5888888777643 4444556
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---KVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~ 353 (394)
.+..+.|+|++.+++..+.++ .|.+||+.......... ........|+|++++|+..+.++ .+++.+ .+++.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~ 400 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVS-TDGRF 400 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEE-CCCce
Confidence 677889999999999888776 78889987644332222 12234457999999888877654 355555 34555
Q ss_pred EEEeecccCceeEEEE
Q 016187 354 VRTFSGHRDAIQAISV 369 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~ 369 (394)
...+..+.+.+..+.|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 5555544444444433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-12 Score=118.69 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=147.6
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
.+.++|...++. ..+..+...+....|||||++|+..+.+ ..|.+|++.+++... +....+.....+|+|+|+.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 466777765543 4455677889999999999998876644 368899998886543 23333445568999999877
Q ss_pred E-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcccC
Q 016187 165 L-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 165 ~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+ +.+.++ .|++||+.+++..+ +..+........|+|+|+.|+..+. +| .|.++++.+++... +.. ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~---~~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF---VGNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCC
Confidence 5 444454 68888998776433 4445555566789999998776553 33 57777877766432 221 1112
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCc
Q 016187 239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD-Q--KLIIWDLQHSLP 312 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~ 312 (394)
.....|+|+++.++..+.. + .|.++|+.+++.. .+. +........|+|++++++..+.+ + .+.++++.....
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3346799999988776543 3 5888999887642 222 22222356899999988776543 3 455666654333
Q ss_pred ceeccCCCCEEEEEEeC
Q 016187 313 RSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~ 329 (394)
.....+...+...+|+|
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 22222233344455554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=110.93 Aligned_cols=315 Identities=15% Similarity=0.162 Sum_probs=193.3
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEeC
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-----------GLVQIWDP 136 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-----------~~i~vwd~ 136 (394)
+-+.|||. +.+|+|-- -.-|.+|--++...++.+. |. .|.-+.|||..+||+|-|.- ..++|||+
T Consensus 214 tyv~wSP~-GTYL~t~H-k~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFH-KQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCC-ceEEEEEe-ccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 56789996 56777754 4556789766655555554 54 48889999999999998742 57899999
Q ss_pred CCCceEEEEecCCC---CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe---
Q 016187 137 SSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--- 210 (394)
Q Consensus 137 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--- 210 (394)
.+|..+..+....+ .-.-..|+.+++++|.-.. .+|.||+..+..++-.-.-.-..|....|+|.++.||-=.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998877765322 1233689999999877655 6788888765333222122234566778999877665211
Q ss_pred --CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCcEEEEeccCC
Q 016187 211 --DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG----------SKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 211 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g----------~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.-..+.+-.+.+++.+.....+. -.=..+-|-.+|.+|..- +.=..+.|+.++...+--....-.
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfn---VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFN---VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred cCCcceEEEEecCccceeeecccee---eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11233344444444333322110 011124455566665432 111234555555443222222345
Q ss_pred CCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCcce-ec--cCCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECC
Q 016187 279 DSIECIGFSRSSPWAATGSM---DQKLIIWDLQHSLPRS-TC--DHEDGVTCLMWLGTSKYVVTG---CVDGKVRVWDSL 349 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~sg---~~dg~i~iwd~~ 349 (394)
+.|-..+|-|.|..+++-+. ..++.+|-+.+..... .. -.....+.+.|+|.|++++.+ |..|.+.++|..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 77888999999987665442 3567888776321111 10 112345778999999998876 457899999987
Q ss_pred CCeEEEE-eecccCceeEEEEccCCCEEEEEeC------CCcEEEEecc
Q 016187 350 SGDCVRT-FSGHRDAIQAISVSAHQDFLVSVSL------DGTARVFEIA 391 (394)
Q Consensus 350 ~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iw~~~ 391 (394)
...+... ...|. ..+.+.|.|.|+|+++++. |.--+||+++
T Consensus 526 ~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 526 YADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 5333322 22344 3578999999999999875 4456677653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-10 Score=102.11 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=173.8
Q ss_pred EEEEeCC----CcEEEEeC--CCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecC----CCeEEEEeCCcc----ceeee
Q 016187 122 LASGGLD----GLVQIWDP--SSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRA----AYLNM 186 (394)
Q Consensus 122 l~t~s~d----~~i~vwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~----d~~i~iw~~~~~----~~~~~ 186 (394)
++.|+.. +.|.+|.+ .++++...- ........+++++|++++|++... .+.|..|.+... ..+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4456655 67888776 555543211 123455678999999998888766 568888887543 23333
Q ss_pred ecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEEE----EcC-----C--CCcccCeEEEEEcCCCCEEEEE
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHV----IRG-----H--PYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~----~~~-----~--~~~~~~i~~~~~~~~~~~l~~g 254 (394)
..........++++|++++|+++. .+|+|.++++.....+.. +.. . ........++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 333344556789999999988876 489999999977422221 110 0 1123457789999999988776
Q ss_pred e-CCCcEEEEECCCCc--EE--EEec-cCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCC--CCCcce-----ec----
Q 016187 255 S-KDGSVHMVNITTGK--VV--SSLV-SHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQ--HSLPRS-----TC---- 316 (394)
Q Consensus 255 ~-~dg~i~i~d~~~~~--~~--~~~~-~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~--~~~~~~-----~~---- 316 (394)
. ....|.+|++.... +. ..+. ........+.|+|+++++... -.+++|.++++. ...... ..
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 4 34589999987654 32 2222 234567889999999987554 567889999876 221110 01
Q ss_pred cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC--CCeE--EEEeecccCceeEEEEccCCCEEEEEe-CCCcEEEEec
Q 016187 317 DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSL--SGDC--VRTFSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEI 390 (394)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~--~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~ 390 (394)
........+.++|++++|.++. ....|.+|++. ++++ +..+......-..++++|++++|+.+. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1112577899999999988765 46789999983 3433 334443344468999999999999776 5679999987
Q ss_pred c
Q 016187 391 A 391 (394)
Q Consensus 391 ~ 391 (394)
+
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-10 Score=100.43 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=175.4
Q ss_pred CeEEEEEc--CCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeC----CCcEEEEeCCC--Cce--EEEEecCCCCEEE
Q 016187 87 DKGFFWRI--NQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWDPSS--GNL--KCTLEGPGGGVEW 154 (394)
Q Consensus 87 ~~v~~w~~--~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~----d~~i~vwd~~~--~~~--~~~~~~~~~~v~~ 154 (394)
+.|.+|++ .++++.. .+. -......++++|++++|.++.. .+.|..|.+.. +.+ +............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 67777776 4444322 221 3345667899999999988876 46888887665 443 2333334455667
Q ss_pred EEEcCCCCEEEEec-CCCeEEEEeCCc-cceee---ee--c--------ccCcCeEEEEECCCCCeEEEEeC-CCcEEEE
Q 016187 155 VSWHPRGHIVLAGS-EDSTVWMWNADR-AAYLN---MF--S--------GHGSSVTCGDFTPDGKTICTGSD-DATLRVW 218 (394)
Q Consensus 155 ~~~~~~~~~l~~~s-~d~~i~iw~~~~-~~~~~---~~--~--------~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vw 218 (394)
++++|++++|+++. .++.+.++++.. +.... .+ . .......++.|+|+|+++++... ...|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999887775 589999999875 22211 11 1 12344678999999998877643 3568999
Q ss_pred cCCCCce-E---EEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCc--EEEEecc------CCCCEEE
Q 016187 219 NPKSGEN-I---HVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNIT--TGK--VVSSLVS------HTDSIEC 283 (394)
Q Consensus 219 d~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~--~~~--~~~~~~~------h~~~i~~ 283 (394)
++..... + ..+.. ....+.+.+.|+|+++++++. -.+++|.++++. +++ .+..+.. .......
T Consensus 172 ~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 8866541 2 22222 134568899999999877554 567889999987 443 2222211 1225788
Q ss_pred EEECCCCCeEEEEe-CCCcEEEEeCCCC--Ccce--ec-cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC--CCCeEE
Q 016187 284 IGFSRSSPWAATGS-MDQKLIIWDLQHS--LPRS--TC-DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDS--LSGDCV 354 (394)
Q Consensus 284 v~~~~~~~~l~s~s-~dg~i~iwd~~~~--~~~~--~~-~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~--~~~~~~ 354 (394)
++++|++++|.++. ..+.|.+|++... .... .. ........++++|++++|+++. .++.|.+|++ .+|.+.
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 99999999877665 4678999998432 2211 11 1233478899999999999886 5678999864 677654
Q ss_pred EEee-cccCceeEEEE
Q 016187 355 RTFS-GHRDAIQAISV 369 (394)
Q Consensus 355 ~~~~-~h~~~v~~l~~ 369 (394)
..-. ..-....||.|
T Consensus 330 ~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 330 PVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEESSSEEEEEE
T ss_pred EecccccCCCCEEEeC
Confidence 4322 11223346655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=114.88 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=149.4
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|.++|...++. ..+..+...+...+|+|+++.|+..+.+ ..|++|++.+++.... ..........+|+|+|+.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 477788775544 3444566778899999999988766543 4689999987754332 2223334467899999988
Q ss_pred E-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCC
Q 016187 207 C-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 207 ~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
+ +.+.+| .|.+||+.+++.. .+... ........|+|+++.++..+. ++ .|.++++.+++... +......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~---~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNH---PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccC---CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC
Confidence 6 454555 5888899877643 33322 223445689999987766553 33 57778887776432 2212223
Q ss_pred EEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEE
Q 016187 281 IECIGFSRSSPWAATGSMD-Q--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCV 354 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~ 354 (394)
.....|+|++.+++..+.. + .|.+||+.+...+... .........|+|++++++..+.+ ..|++++.. +...
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~ 410 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVR 410 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCce
Confidence 3456899999998877653 3 4778898765443322 12122245799999998876643 347777764 4445
Q ss_pred EEeecccCceeEEEEcc
Q 016187 355 RTFSGHRDAIQAISVSA 371 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~ 371 (394)
+.+..+.+.+...+|+|
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 55665556677777776
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-12 Score=108.67 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=173.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc-CCCeee-EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~-~~~~~~-~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.+.||.+.|++...-|.+.. +.+.+.|.+++||-- ..++.- .....-..+++++.+.++...|+.|-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 35567899999999988886654 568899999999963 444432 233334678999999999999999999999988
Q ss_pred EeCC----CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 134 WDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 134 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
+.+. ..........|...+..+-|+.....+++.+.|..+.---.+.+..+..+.- ....++..|.- .+...|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~--~~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA--LYAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee--EEEEec
Confidence 7543 3334445567888999999998888999999888765433443332211110 00111111111 134445
Q ss_pred eCCCcEEEEcCC--CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEE
Q 016187 210 SDDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGF 286 (394)
Q Consensus 210 ~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~ 286 (394)
...|.|.+-.+. .-..+..+.+ |...+++++|.|...++++|..|..+.+||+.-.+ ....+++|...|..+..
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~---h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNG---HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcC---cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 555555444332 2233444444 67789999999999999999999999999997554 34567789999998888
Q ss_pred CCCCCeEEEEeCCCcEEEEeCC
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
-+.-..+.+++.||.|.+|++.
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhheeeeeccCCCeEEEEecc
Confidence 8888889999999999999974
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-11 Score=114.67 Aligned_cols=233 Identities=16% Similarity=0.136 Sum_probs=143.8
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-G--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
.+.++|....+. ..+..+...+.+..|||||++|+..+.+ + .|.+||+.+++... +....+.....+|+|+++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 566667655443 3455567789999999999998866543 2 58889998876532 22222334467999999976
Q ss_pred EE-ecCCCe--EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcccC
Q 016187 165 LA-GSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 165 ~~-~s~d~~--i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+. .+.++. |+++++.+++..+ +..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +... ...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCC
Confidence 54 555664 7778887766433 3445455567889999998876553 34 46666777665432 2211 112
Q ss_pred eEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCc--EEEEeCCCCCc
Q 016187 239 LTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQK--LIIWDLQHSLP 312 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~ 312 (394)
.....|+|+|++++..+. ++ .|.++|+.+++.. .+... .......|+|+++.++..+. ++. +.+++......
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 234689999998876654 34 4566788877643 23222 12234579999998776554 333 56667654433
Q ss_pred ceeccCCCCEEEEEEeC
Q 016187 313 RSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~ 329 (394)
.....+...+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 33333334455566665
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-11 Score=113.14 Aligned_cols=298 Identities=17% Similarity=0.259 Sum_probs=197.6
Q ss_pred CceeeeeccCCcEEEEEEcCCC-----------CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC---CC-
Q 016187 55 DSTHIFSGHSDEVYSVACSPTD-----------ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DG- 119 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~-----------~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~---~g- 119 (394)
+-.+.+..|...|+.+.|.|.. .-+||++...|.|-+||+..+..+..+..|.++|..++|-+ +.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 4456677899999999998731 23678888999999999999888888999999999999975 33
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEe---------------------
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWN--------------------- 177 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~--------------------- 177 (394)
..|+.-....+|.+|+..+|+...+.........++.+.|-+ ..+..-+..|.+.+-+
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 456666677899999999998766555444555555555522 2222222223333222
Q ss_pred -----------------------------------------------------CCccceeeeecccCcCeEEEEECCCC-
Q 016187 178 -----------------------------------------------------ADRAAYLNMFSGHGSSVTCGDFTPDG- 203 (394)
Q Consensus 178 -----------------------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~- 203 (394)
++-..++....-..+.+.-+.+-|++
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 21111111111222223345666654
Q ss_pred -CeEEEEeCCCcEEEEcCCC----------------CceEEEEcCC----------------------------------
Q 016187 204 -KTICTGSDDATLRVWNPKS----------------GENIHVIRGH---------------------------------- 232 (394)
Q Consensus 204 -~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~---------------------------------- 232 (394)
..|+....||.+.+|-.+. +.+.+.++..
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 4688889999999996543 2222211100
Q ss_pred --------------------------------------CCcccCeEEEEEcC-----------CC-------CEEEEEeC
Q 016187 233 --------------------------------------PYHTEGLTCLTISA-----------DS-------TLALSGSK 256 (394)
Q Consensus 233 --------------------------------------~~~~~~i~~~~~~~-----------~~-------~~l~~g~~ 256 (394)
..|..+.++....| .+ .+++.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 00122222222221 11 26788999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE---------EEeCCCcEEEEeCCCCCcceec----cCCCCEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA---------TGSMDQKLIIWDLQHSLPRSTC----DHEDGVT 323 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~---------s~s~dg~i~iwd~~~~~~~~~~----~~~~~v~ 323 (394)
.|+|.++|+.++.+...+..|+..|.++.|-....++- +++.-+.+.+-|++++..+... ..+.+|.
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 99999999999999889999999999999987766542 2333345777888877555443 2345789
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
.+.-+..++||+..-.+.-+.+||+++..
T Consensus 526 ~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred eeeecccCceEEEEecccchHHHhhccch
Confidence 99999999999999999999999986543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-10 Score=98.92 Aligned_cols=256 Identities=17% Similarity=0.117 Sum_probs=164.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC----------CCeEEEEeCCccceeeeeccc-------C
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----------DSTVWMWNADRAAYLNMFSGH-------G 191 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~~~h-------~ 191 (394)
++|.+.|..+++.+.++.....+-- + ++|+++.++.+.. +..|.+||..+.+.+..+..- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999888775443332 4 9999997766555 789999999999888766532 1
Q ss_pred cCeEEEEECCCCCeEEEEe-C-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 016187 192 SSVTCGDFTPDGKTICTGS-D-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-G 268 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~ 268 (394)
......+++|||++|+... . +..|-+.|+.+++.+..+... . ...+-..++..++ +-+.||......+.. |
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp----~-~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP----D-CYHIFPTANDTFF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC----C-CcEEEEecCCccE-EEeecCceEEEEecCCC
Confidence 2233678999999998765 3 789999999999887776531 1 1111112222222 122344444433321 2
Q ss_pred cEE-EEec-cCC--CCEEEE-EECC-CCCeEEEEeCCCcEEEEeCCCCC-----cceec--------cCCCCEEEEEEeC
Q 016187 269 KVV-SSLV-SHT--DSIECI-GFSR-SSPWAATGSMDQKLIIWDLQHSL-----PRSTC--------DHEDGVTCLMWLG 329 (394)
Q Consensus 269 ~~~-~~~~-~h~--~~i~~v-~~~~-~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~--------~~~~~v~~~~~~~ 329 (394)
+.. .+.. -+. .++..- .|.+ ++.++..... |+|.+.|+.... ..... -....+.-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 211 1100 011 111000 3344 7777766665 999999964321 11111 1233445589999
Q ss_pred CCCEEEEEe----------CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-CCCcEEEEeccCCC
Q 016187 330 TSKYVVTGC----------VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-LDGTARVFEIADFK 394 (394)
Q Consensus 330 ~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iw~~~~~~ 394 (394)
+++++.... ..+.|.++|..+++.+..+.- ...+..++++||++ +|++.. .++.|.++|....|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999888743 225799999999999998874 44789999999999 777555 67889999987653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-11 Score=107.01 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=201.1
Q ss_pred EEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec
Q 016187 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (394)
Q Consensus 89 v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 168 (394)
-.+|+..+...-..+..-.-++..++|||.|.+|++.... .|.+|.-..+..+..+. ...|..+.|+|.+++|.+=+
T Consensus 14 ~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 14 SVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred EEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeec
Confidence 3467766655545555566789999999999999877654 59999988777554444 34688999999999998855
Q ss_pred CCC---------------eEEEEeCCccceeeeecccCcC--eE-EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 169 EDS---------------TVWMWNADRAAYLNMFSGHGSS--VT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 169 ~d~---------------~i~iw~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
... .+.+||..++..+..+.+-..+ .. -+.|+.+.+++|=- ....+.|+++ ++. +....
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n-~~~~p 167 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN-IEEHP 167 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc-cccCc
Confidence 433 4899999999988887766554 33 56888888776644 3356899997 322 11111
Q ss_pred CCCCcccCeEEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe------
Q 016187 231 GHPYHTEGLTCLTISADST--LALS-----GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS------ 297 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~--~l~~-----g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s------ 297 (394)
.+.....++....++|.+. .++. .+..+.+++|.+..++.+.+-.-....=-.+.|.+.+.+|+.--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 1112235678888888743 2222 56778999999987776654322222223567788887765321
Q ss_pred -----CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 298 -----MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT--GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 298 -----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
....+.|++++...++......++|...+|.|.++.+++ |-....+.++|++.. .. +..-.+.=+.+.|+
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fs 324 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFS 324 (561)
T ss_pred ccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCccccccccc
Confidence 124688888886655555466788999999998876554 457889999998754 33 23333444678899
Q ss_pred cCCCEEEEEeCC---CcEEEEecc
Q 016187 371 AHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 371 ~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
|.+++++.++-| |.|-+|+..
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred CcccEEEEecCCccccceEEeccC
Confidence 999999998765 678888854
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=105.12 Aligned_cols=241 Identities=17% Similarity=0.303 Sum_probs=168.6
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----eeeeecccCc------------CeEEEEECCCCC--eEEEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHGS------------SVTCGDFTPDGK--TICTG 209 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~--~l~s~ 209 (394)
.+-+.++.|...|.+|++|..+|.+.++.-.... ....++.|.. .|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3457889999999999999999999999754322 2333444432 466788887654 57777
Q ss_pred eCCCcEEEEcCCCCce--------------------EEEEcC-------------CCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 210 SDDATLRVWNPKSGEN--------------------IHVIRG-------------HPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~--------------------~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+.|++|++|.+..... +..+.. ...|...|++++++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8899999998753211 001110 12356668999999999888765 5
Q ss_pred CCcEEEEECCCCc---EEEEeccC-----CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc-ce---ec-------
Q 016187 257 DGSVHMVNITTGK---VVSSLVSH-----TDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLP-RS---TC------- 316 (394)
Q Consensus 257 dg~i~i~d~~~~~---~~~~~~~h-----~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~-~~---~~------- 316 (394)
|=.|.+|++.--. .+..++.+ +.-|++..|+|. ...++..+..|+|+|.|++.... -. ..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7789999986322 12222322 345888899986 56788889999999999974311 00 00
Q ss_pred ------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCeEEEEeeccc------------Cce---eEEEEccCCC
Q 016187 317 ------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS-LSGDCVRTFSGHR------------DAI---QAISVSAHQD 374 (394)
Q Consensus 317 ------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~~~~~~ 374 (394)
.--..|..+.|++.|+|+++-.. -+|++||+ ...+.+..+.-|. ..| ..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 01124677899999999987542 58999998 5667777777663 233 3578888999
Q ss_pred EEEEEeCCCcEEEEecc
Q 016187 375 FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~ 391 (394)
+++|||.....++|+++
T Consensus 343 ~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEecccccceEEEecCC
Confidence 99999999999999855
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=134.33 Aligned_cols=189 Identities=18% Similarity=0.293 Sum_probs=154.8
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 269 (394)
+-..|.++.=+|...+-+||+.||.|++|....++.+..++.. ....++.+.|+.+|+.+..+..||.|.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 4456677777888888999999999999999888888877643 23678888999999999999999999999986 66
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEe---CCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 270 VVSSLVSHTDSIECIGFSRSSPWAATGS---MDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 270 ~~~~~~~h~~~i~~v~~~~~~~~l~s~s---~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
+....+.|......+.|-. ..+++++ .++.+.+||.... .......|..+++++++.|..+.|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 7778888998888888875 4566553 4678999996432 1122256889999999999999999999999999
Q ss_pred EEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 345 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+||++..++++.+.. +. ...++++|+..|.|+||++..|
T Consensus 2362 l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999998888876664 33 5689999999999999998865
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-11 Score=113.34 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=146.2
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|.++|....+. ..+......+....|+|+|+.|+..+. + ..|++||+.+++.... ..........+|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 567778655443 344445667888999999998876543 2 3688899887654322 1112223457899999987
Q ss_pred EE-EeCCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCC
Q 016187 207 CT-GSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 207 ~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
+. .+.+|. |.++|+.+++.. .+.. +........|+|+++.++..+. ++ .|.++|+.+++... +......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~---~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITR---HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECcc---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC
Confidence 64 556665 777788776543 3322 1223456789999997766543 33 46777887776432 2222222
Q ss_pred EEEEEECCCCCeEEEEeC-CCc--EEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-C--eEEEEECCCCeEE
Q 016187 281 IECIGFSRSSPWAATGSM-DQK--LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD-G--KVRVWDSLSGDCV 354 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~ 354 (394)
.....|+|++++++..+. ++. |.++|+.+......... .......|+|++++|+..+.+ | .+++++. +|+..
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~ 429 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK 429 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence 345689999998877655 343 45567766543322211 111234799999988765543 3 3777776 67777
Q ss_pred EEeecccCceeEEEEcc
Q 016187 355 RTFSGHRDAIQAISVSA 371 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~ 371 (394)
+.+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 77777666777788876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-11 Score=110.93 Aligned_cols=238 Identities=12% Similarity=0.093 Sum_probs=142.7
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCC
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL---ASGGLDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l---~t~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (394)
..+++.|...++. ..+......+.+-.|||||+.+ ++...++ .|.+.++.+++... +....+.....+|+|+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 3566666655443 3344455667788999999752 2443443 57777888776443 22233445568999999
Q ss_pred CEEEEecC-CC----eEEEEeCCc---cceeeeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEc--CCC-CceEEEE
Q 016187 162 HIVLAGSE-DS----TVWMWNADR---AAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWN--PKS-GENIHVI 229 (394)
Q Consensus 162 ~~l~~~s~-d~----~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd--~~~-~~~~~~~ 229 (394)
+.|+..+. ++ .+..|++.. ++..+...++.......+|+|||+.|+..+ .+|..++|. +.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 87765442 23 334466654 232233323323345678999999887655 467666664 321 2223333
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEE
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM---DQKLI 303 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~---dg~i~ 303 (394)
.. ....+....|+|+|+.++..+.+ ..|.+||+.+++.. .+......+....|+|++++|+.... ...|.
T Consensus 323 t~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 TK---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred cc---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 22 12345678899999988766543 46999999888754 33333345677899999998775433 34577
Q ss_pred EEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 304 IWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 304 iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
++|+..............+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeecCCCcccCceecCC
Confidence 888876554433333334555666654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=121.33 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=191.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..+.|.||+..|..++.-.+ .+-+++++.|++|++|.+.. ..+..+++.|+.+|..+.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 35568899999988875443 44577899999999999753 23556789999999999999998888655 8
Q ss_pred CcEEEEeCCCCceEEEEec--CCCCEEEEEEcC--CCCEEEE-ecCCCeEEEEeCCccceeeee-----cccCcCeEEEE
Q 016187 129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHP--RGHIVLA-GSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGD 198 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~-~s~d~~i~iw~~~~~~~~~~~-----~~h~~~v~~~~ 198 (394)
+-|++||.--|+.+..+.. ..+.+.-+..-+ +.+++++ ++...+++++|.+.......+ .+...-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999999887776653321 122233333333 3444444 478999999999887655444 34456688999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCcEEEEeccC
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM-VNITTGKVVSSLVSH 277 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i-~d~~~~~~~~~~~~h 277 (394)
..+.|+.++.+-..|.|.+.|.++|+.+..++.... ....++ .|..+.++....|.++.+ |....+....+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec---dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC---DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccc---hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999999998776664321 111222 355667777778899988 887766554444332
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-C------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-S------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
..+..-+ -.-|+-|+++.....+.+|.-.. . .....-...+..++++-.|-+.-+.+|...|.|.+
T Consensus 960 pepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2222111 12256688888778888884211 0 00111123455677777787777778888888875
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=111.40 Aligned_cols=189 Identities=17% Similarity=0.299 Sum_probs=148.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---CCCCEEEEEEc------C--------------CCCEEEEecCCCe
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWH------P--------------RGHIVLAGSEDST 172 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~s~d~~ 172 (394)
.|-+.++|....||.+++|++.++++...+.. -.+...+..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999998887655532 22344444443 2 1235777888999
Q ss_pred EEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
|.+|++..++....+. .|.+.|.++.++.+-..|.|++.|+.+..|+....+.+...+.. ...+.+++++||+..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~---~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ---KPLVSSLCISPDGKI 158 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC---CCccceEEEcCCCCE
Confidence 9999999888766654 68899999999999999999999999999999988877766643 445788999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC-----CCeEEEE-eCCCcEEEEeCCC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-----SPWAATG-SMDQKLIIWDLQH 309 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-----~~~l~s~-s~dg~i~iwd~~~ 309 (394)
+++++ +.|++||+.+++.+.++.+|.++|+++.|... |.+++++ ..+.-+.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98875 68999999999999999999999999999876 5665554 4455566776543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=134.05 Aligned_cols=193 Identities=18% Similarity=0.329 Sum_probs=155.9
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++.|-..|.++.=+|...+.+||+.||.|++|....+..+..+.. ....|+.+.|+.+|+.+..+..||.+-+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 444667899999899999999999999999999988887766542 23788999999999999999999999999988 4
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEe---CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+.....+.|........|-. ..+++++ .++.+.+||.........+ |..|..+.+++++.|..+++++|+.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCcceEEEecCCcC
Confidence 44556677888878777764 5566553 4688999997543322222 256889999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+++||++..++++.++. ++ ...++++|+..|.++||++...
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999887766654 33 5678999999999999998754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.9e-11 Score=109.75 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=145.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE--E-EEecCC--CeEEEEeCCccceeeeecccCcCeEEEEECCCC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI--V-LAGSED--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~s~d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~ 203 (394)
..|.+.|...++.. .+.........-+|+|+|+. + ++...+ ..|++.++.+++..+.. .........+|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 35667776655443 34434455667799999874 2 244444 36777788766543322 223333457899999
Q ss_pred CeEEEEeC-----CCcEEEEcCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CcEE
Q 016187 204 KTICTGSD-----DATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMV--NITT-GKVV 271 (394)
Q Consensus 204 ~~l~s~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~--d~~~-~~~~ 271 (394)
+.|+..+. +..+.+|++..+ +........ .......+|+|||+.++..+ .+|...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~---~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA---FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC---CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 98876543 333455776643 222222211 11234578999999776554 46655554 4432 2333
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC---CCeEEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV---DGKVRV 345 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~i 345 (394)
..+..+...+....|+|++++|+..+.+ ..|.+||+..............+....|+|++++|+..+. ...|++
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 4444445567788999999988876543 3689999987765544333335667899999998875433 356889
Q ss_pred EECCCCeEEEEeecccCceeEEEEccC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
+|+.+++...... ..+.+...+|+|-
T Consensus 400 vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 400 ISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EECCCCCEEEeec-CCCcccCceecCC
Confidence 9988776544333 3455667778764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-09 Score=90.33 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=182.8
Q ss_pred CCeEEEEEcCCC--ee-eEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeC--CCCceEE--EEecCCCCEEEE
Q 016187 86 DDKGFFWRINQG--DW-ASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDP--SSGNLKC--TLEGPGGGVEWV 155 (394)
Q Consensus 86 d~~v~~w~~~~~--~~-~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~--~~~~~~~--~~~~~~~~v~~~ 155 (394)
+.-|++|++.+. +. ...+-.+...++-|+|+|++++|.++-.+ |.|..|.+ .+|++.. .......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 677899998632 22 12334567788999999999999888655 56666554 4466532 222233445789
Q ss_pred EEcCCCCEEEEecC-CCeEEEEeCCc-ccee--eeecccCcC----------eEEEEECCCCCeEEEEeCC-CcEEEEcC
Q 016187 156 SWHPRGHIVLAGSE-DSTVWMWNADR-AAYL--NMFSGHGSS----------VTCGDFTPDGKTICTGSDD-ATLRVWNP 220 (394)
Q Consensus 156 ~~~~~~~~l~~~s~-d~~i~iw~~~~-~~~~--~~~~~h~~~----------v~~~~~~~~~~~l~s~~~d-g~i~vwd~ 220 (394)
+.++++++++++.. .|.|.++-++. +... .....|... +.+..|.|++++|++..-. -.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998888764 58899998854 2211 112234333 6778899999999887642 35889999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-cEEEEecc---------CCCCEEEEEECCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTG-KVVSSLVS---------HTDSIECIGFSRS 289 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~-~~~~~~~~---------h~~~i~~v~~~~~ 289 (394)
..++....-...-....+.+.+.|+|+++++..-. .+++|.+|..... ..+..++. ...+..+|.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 87653222111112345688999999999877654 6899999998763 33333332 2346778999999
Q ss_pred CCeEEEEeCC-CcEEEEeCCCCCc--c---eeccCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEE--CCCCeEEEEee-c
Q 016187 290 SPWAATGSMD-QKLIIWDLQHSLP--R---STCDHEDGVTCLMWLGTSKYVVTGCVD-GKVRVWD--SLSGDCVRTFS-G 359 (394)
Q Consensus 290 ~~~l~s~s~d-g~i~iwd~~~~~~--~---~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~iwd--~~~~~~~~~~~-~ 359 (394)
|++|..+... ..|.+|.+..... . ....+........+++.+++|+++..+ ..|.+|. -.+|++-.... .
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~ 334 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA 334 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence 9999887543 3577776653311 1 111223335667788999999888765 4578875 45665543322 2
Q ss_pred ccCceeEEEEc
Q 016187 360 HRDAIQAISVS 370 (394)
Q Consensus 360 h~~~v~~l~~~ 370 (394)
....-.||.|.
T Consensus 335 ~~p~Pvcv~f~ 345 (346)
T COG2706 335 VVPEPVCVKFL 345 (346)
T ss_pred CCCCcEEEEEc
Confidence 22233466664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-10 Score=107.60 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=185.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---------------eeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---------------~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
....|++|... ..++|.||.||.+++-.+.+.. .-+++.||++.|.-+.|+...+.|-|...+|
T Consensus 15 vkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45689999974 5689999999999999875431 2246899999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-eeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l 206 (394)
-|.||-+-.|.+...+ ......|.+++|+.+|..++....||.|.+=.++....- +.+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 9999988777543222 224456889999999999999999999987666543321 11221 123357899999998
Q ss_pred EEEeCCCcEEEEcCCCCc-------eEEEEcC-CCCcccCeEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 207 CTGSDDATLRVWNPKSGE-------NIHVIRG-HPYHTEGLTCLT--------ISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~-------~~~~~~~-~~~~~~~i~~~~--------~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
+.+-..|.+.++|...+- +.....+ .+.....+..+. ..|+...++++...|.+.+..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 888899999999975431 1111111 000011122222 246888999999999988865433221
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCC---------cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQ---------KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
..-+ .-.-.+..+.|+++|..||.++.+. .|.+|..-.............|+.+.|-..|-.++.+ .|+
T Consensus 252 Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vds 329 (1189)
T KOG2041|consen 252 PVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDS 329 (1189)
T ss_pred CeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecc
Confidence 1111 1124677889999999999987653 4555544333333333445668888887776555543 244
Q ss_pred eEEE
Q 016187 342 KVRV 345 (394)
Q Consensus 342 ~i~i 345 (394)
.|++
T Consensus 330 fiyf 333 (1189)
T KOG2041|consen 330 FIYF 333 (1189)
T ss_pred eEEE
Confidence 4444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-09 Score=104.97 Aligned_cols=279 Identities=14% Similarity=0.233 Sum_probs=182.1
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEE----eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC--
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-- 179 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~-- 179 (394)
..+.|.++.|-++...++.+..+|.|.+. +..+.... .+-.-..+|.+++|+||+.+|+..+.++++.+.+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999998 55444332 122234679999999999999999988888765321
Q ss_pred -------------c--------cceeeeecc------------------------cCcCeEEEEECCCCCeEEEEeC---
Q 016187 180 -------------R--------AAYLNMFSG------------------------HGSSVTCGDFTPDGKTICTGSD--- 211 (394)
Q Consensus 180 -------------~--------~~~~~~~~~------------------------h~~~v~~~~~~~~~~~l~s~~~--- 211 (394)
. |+....|.| +...-..++|-.||+++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 111111111 1223346789999999998764
Q ss_pred C---CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEe----ccCCCCE
Q 016187 212 D---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSL----VSHTDSI 281 (394)
Q Consensus 212 d---g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~----~~h~~~i 281 (394)
. +.+|||+-. |.....-+.. .+--.+++|.|.|+++++... ...|.+|.- +|-....+ ......|
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v---~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPV---DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccC---CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence 2 579999954 5433222211 111236799999999988754 345666663 33322222 2345679
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCC--Ccc--eeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE----CCCC-
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPR--STCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWD----SLSG- 351 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~--~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd----~~~~- 351 (394)
..+.|++++..||..-.|. |.+|-.... ..+ ..+.....+..+.|+|.. ..|...+.+|.+..++ +..+
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999977555 999987653 111 112223345558899854 4466666667665543 2111
Q ss_pred -------eEEEEeec-----------------------ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 352 -------DCVRTFSG-----------------------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 352 -------~~~~~~~~-----------------------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+..+.| -..+|.+++|++++..++....||+|.+|.+.
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 11112221 24679999999999889999999999999854
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-09 Score=112.47 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=163.6
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC--------------cccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------------HKDSVSSLAFSMDGQLLASGG-LDGLVQI 133 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~--------------h~~~V~~v~~s~~g~~l~t~s-~d~~i~v 133 (394)
.+++++.++.++++-...++|++||.. ++.+..+.+ +-.....|+++++++.|+.+. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 567777667777788888999999975 444433322 112357899999988766554 4578999
Q ss_pred EeCCCCceEEEEecC-----------------CCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeeccc-----
Q 016187 134 WDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----- 190 (394)
Q Consensus 134 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h----- 190 (394)
+|+.++... ++.+. -.....++++| ++.++++.+.++.|++|+..++... .+.+.
T Consensus 651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 998776543 22210 01235789999 5667778888899999998765432 11111
Q ss_pred ----------CcCeEEEEECCCCCeE-EEEeCCCcEEEEcCCCCceEEEEcCCC------------------CcccCeEE
Q 016187 191 ----------GSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLTC 241 (394)
Q Consensus 191 ----------~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~~i~~ 241 (394)
-.....++++|++++| ++-+.++.|++||+.++.......+.+ ..-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234678999998854 555667899999998765322111100 00112457
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
++++++|.++++-..+++|++||..++....... +.-.....+++++++.++++-+.+++|++||+.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 8899999999999999999999998876543221 111246789999999999998999999999997
Q ss_pred CCC
Q 016187 309 HSL 311 (394)
Q Consensus 309 ~~~ 311 (394)
+..
T Consensus 889 ~~~ 891 (1057)
T PLN02919 889 KGE 891 (1057)
T ss_pred CCc
Confidence 653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-10 Score=99.93 Aligned_cols=272 Identities=13% Similarity=0.206 Sum_probs=187.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEeCC
Q 016187 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNAD 179 (394)
Q Consensus 111 ~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----------d~~i~iw~~~ 179 (394)
+-+.|||-|.||+|--.-| |.+|--.+......+. +..|..+.|+|..++|++=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999998776 8899765555444443 345888999999999998553 2579999999
Q ss_pred ccceeeeecccC--cCe-EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 180 RAAYLNMFSGHG--SSV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 180 ~~~~~~~~~~h~--~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
++...+.+..-. ..+ .-..||.|++++|--.. .+|.||+..+ ...+...+....+|....|+|.+.+||--..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceEEEEcc
Confidence 998877766522 222 24589999999987665 5688998765 3344444555678889999999988875432
Q ss_pred -----CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE----------eCCCcEEEEeCCCC-CcceeccCCC
Q 016187 257 -----DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG----------SMDQKLIIWDLQHS-LPRSTCDHED 320 (394)
Q Consensus 257 -----dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~----------s~dg~i~iwd~~~~-~~~~~~~~~~ 320 (394)
-..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.- +.-..+.|+.++.. .+........
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 2356677777777766544433222345566677777642 22224666766554 3334445567
Q ss_pred CEEEEEEeCCCCEEEEEeC---CCeEEEEECCC----CeEEEEeecccCceeEEEEccCCCEEEEE---eCCCcEEEEec
Q 016187 321 GVTCLMWLGTSKYVVTGCV---DGKVRVWDSLS----GDCVRTFSGHRDAIQAISVSAHQDFLVSV---SLDGTARVFEI 390 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---s~dg~i~iw~~ 390 (394)
.|...+|-|.|..+++-+. ..++.+|.+.+ .++++.|.. ...+.|.|+|.|++++.+ |..|.+.++|.
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 7889999999987765543 35688887652 234445543 456889999999998865 45788998886
Q ss_pred c
Q 016187 391 A 391 (394)
Q Consensus 391 ~ 391 (394)
.
T Consensus 525 ~ 525 (698)
T KOG2314|consen 525 D 525 (698)
T ss_pred c
Confidence 5
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-10 Score=100.26 Aligned_cols=295 Identities=14% Similarity=0.199 Sum_probs=189.3
Q ss_pred CeEEEEEcCCCeeeEeecCc---ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h---~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+.+|+............+ ..+++..++|++|+++|-+ .+..++|++..++..+.+.... .+..+.|+|.+++
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~y 87 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNY 87 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccc
Confidence 34556765432222222223 3457788999999888755 4678999998888655444433 6889999999988
Q ss_pred EEEe-----cC-----CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 164 VLAG-----SE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 164 l~~~-----s~-----d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
|.+= .. .-.+.+|++.++.....++.....-++..|++|..+.| --..+.+.+|++...+.+ .+.
T Consensus 88 L~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~----~~k 162 (566)
T KOG2315|consen 88 LLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI----QHK 162 (566)
T ss_pred cccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccce----eee
Confidence 7751 12 23577999988544444443332225778888765432 233467999998763322 233
Q ss_pred CcccCeEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCcEE-----EEeccCCCCEEEEEECCCCC-e--EEEEeC
Q 016187 234 YHTEGLTCLTISADS--TLALS-----GSKDGSVHMVNITTGKVV-----SSLVSHTDSIECIGFSRSSP-W--AATGSM 298 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~--~~l~~-----g~~dg~i~i~d~~~~~~~-----~~~~~h~~~i~~v~~~~~~~-~--l~s~s~ 298 (394)
.+..+++.+.++|.+ ..+++ ++.-+.++||.......- +++. ...--.+.|++-+. + |++...
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEee
Confidence 456778888888863 33333 455668999987632111 1111 11122456766554 2 233333
Q ss_pred CC---------cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCCeEEEEeecccCceeEE
Q 016187 299 DQ---------KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV--TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367 (394)
Q Consensus 299 dg---------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 367 (394)
|. ++.+.+++....+......++|.++.|+++++.++ -|-+=.++.|||++ ++.+..|. .++=+++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~ 317 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTA 317 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccce
Confidence 33 57777777555555556678999999999996544 45677889999975 55665543 4566789
Q ss_pred EEccCCCEEEEEeC---CCcEEEEeccCCC
Q 016187 368 SVSAHQDFLVSVSL---DGTARVFEIADFK 394 (394)
Q Consensus 368 ~~~~~~~~l~s~s~---dg~i~iw~~~~~~ 394 (394)
-|+|.|++|+-+|- -|.|.+||+.++|
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 99999999998875 5899999998865
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=114.08 Aligned_cols=282 Identities=13% Similarity=0.231 Sum_probs=184.5
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
..+.||...|+.++--.+.+-+++++.|++|++|.+... .+..+++.|..+|..+.|-.+.+++++ .|+.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 457899999999877667788999999999999987532 245577889999999999988777664 68999
Q ss_pred EEEeCCccceeeeec-----ccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEc
Q 016187 174 WMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS 245 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~ 245 (394)
.+||.=.+..+..+. +..+.|.|+. +-+...+..| +...+|+++|.+..+-...++.. +....-++++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999975554443221 1223344432 1134444444 78899999999988765555432 3344568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE-EeCCCCCcceeccCCCCEEE
Q 016187 246 ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLII-WDLQHSLPRSTCDHEDGVTC 324 (394)
Q Consensus 246 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~v~~ 324 (394)
+.|+.++++-.+|+|.+.|.++|+.+.+...-.-....++ .|..+.|+....|.++.+ |-...+..............
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 9999999999999999999999998876654333332232 355667888888888888 75433322111110000000
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEE-CCC---CeEEEEe--ecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWD-SLS---GDCVRTF--SGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd-~~~---~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
-.-.-|.-|+++.....+.+|- ... ...+..+ ....+..++++.-|=...++.|..-|.|++
T Consensus 965 -flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 -FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred -hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0011245566666666677772 110 0111111 123456778887787777778888888875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-10 Score=106.41 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=199.5
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC------C------CEEEEEeCCCcEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD------G------QLLASGGLDGLVQ 132 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~------g------~~l~t~s~d~~i~ 132 (394)
..-.++.|+|.+ +||-|+. ..|.+-|..+.+.++.++-|...|+.+.|.|- + -+||++...|.|.
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 335677899853 7888765 56778888888899999999999999999872 1 2567777889999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcC---CC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEE
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTIC 207 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 207 (394)
+||...+.....+..+..++..++|-+ ++ .+|++-...+++.+|+..++..+-.+........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999988888888888888888865 34 4777888889999999999887766655556667788877 555555
Q ss_pred EEeCCCcEEEEcCCC-------CceEEEEcCC------------------------------------------------
Q 016187 208 TGSDDATLRVWNPKS-------GENIHVIRGH------------------------------------------------ 232 (394)
Q Consensus 208 s~~~dg~i~vwd~~~-------~~~~~~~~~~------------------------------------------------ 232 (394)
.-+..|.+-+-+... ++..+.-..+
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 555556555554311 1111110000
Q ss_pred ----------------CCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEe-----cc-CCCCEE------
Q 016187 233 ----------------PYHTEGLTCLTISADS--TLALSGSKDGSVHMVNITTGKVVSSL-----VS-HTDSIE------ 282 (394)
Q Consensus 233 ----------------~~~~~~i~~~~~~~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~-h~~~i~------ 282 (394)
+....++..+.+-|++ ..+++...||.+.+|-.+......+. .. -...+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~ 332 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME 332 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech
Confidence 0011122234444543 47888999999999976542111110 00 011122
Q ss_pred -----EEEECCC-CCeEEEEeCCCcEEEEeCCCCCcce--------------------------------eccCCCCEEE
Q 016187 283 -----CIGFSRS-SPWAATGSMDQKLIIWDLQHSLPRS--------------------------------TCDHEDGVTC 324 (394)
Q Consensus 283 -----~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~--------------------------------~~~~~~~v~~ 324 (394)
.....|. ...++.--.+|.+.+|.++.+.... ...|..+.++
T Consensus 333 ~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~ 412 (1062)
T KOG1912|consen 333 EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTC 412 (1062)
T ss_pred hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCcee
Confidence 2223343 2333334456777778765221000 0124445554
Q ss_pred EEEeC-----------CC-------CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 325 LMWLG-----------TS-------KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 325 ~~~~~-----------~~-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
....| .+ ..+|.|...|+|.++|+.++..-+.|..|...|.++.|.....+
T Consensus 413 ~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 413 VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeE
Confidence 43332 11 37889999999999999999999999999999999999765443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=94.72 Aligned_cols=260 Identities=15% Similarity=0.223 Sum_probs=169.4
Q ss_pred CCeEEEEEcCCCeeeE--ee-cCcccCEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCC------CE
Q 016187 86 DDKGFFWRINQGDWAS--EI-QGHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGG------GV 152 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~--~~-~~h~~~V~~v~~s~---~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~------~v 152 (394)
.|.+.++++...+... ++ ..-+..+..|.|.. +|. .|+-+-..|.|.++..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4567788876655433 11 12334566777763 455 566777889999987654444444433211 23
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccce--eeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
.++.|++.+..++++-.+|.+.+-+...... .+.+++|..++.-++|+. +.+.+.+|+.|+.+.-||++..+. ..+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eee
Confidence 4677888898999998999998666554433 347899999999899986 456889999999999999994442 233
Q ss_pred cCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEe
Q 016187 230 RGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWD 306 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd 306 (394)
.....|..+|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|..+..+|.-. .++.+..-.-.+|-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33445788899988776 578999999999999999985 45554432 347888888888643 223333333456665
Q ss_pred CCCCCcc------eeccCCCCEEEEEEeCCCCEEEEEe-CCCeEE-EEE
Q 016187 307 LQHSLPR------STCDHEDGVTCLMWLGTSKYVVTGC-VDGKVR-VWD 347 (394)
Q Consensus 307 ~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~-iwd 347 (394)
+...... ....|..-+....|.....+|+|++ .|..++ +|-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 5443222 1223444455555644456677754 455544 664
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-09 Score=104.24 Aligned_cols=323 Identities=11% Similarity=0.140 Sum_probs=196.7
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEE----EcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-- 137 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w----~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~-- 137 (394)
.+.|.++.+.++... ++-+..+|.|.+. +....+ +.....-...|.+++||||++.|+.+..+++|.+-+..
T Consensus 75 ~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 467888888885443 3445567788777 433322 12222234689999999999999999999888775311
Q ss_pred -----------CC----------ceEEEEe------------c------------CCCCEEEEEEcCCCCEEEEecC---
Q 016187 138 -----------SG----------NLKCTLE------------G------------PGGGVEWVSWHPRGHIVLAGSE--- 169 (394)
Q Consensus 138 -----------~~----------~~~~~~~------------~------------~~~~v~~~~~~~~~~~l~~~s~--- 169 (394)
-| +....+. . ....-..++|-.||.++++.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00 0000110 0 1123356889999999988764
Q ss_pred C---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC---CCcEEEEcCCCCceEEEEcCC-CCcccCeEEE
Q 016187 170 D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGH-PYHTEGLTCL 242 (394)
Q Consensus 170 d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~ 242 (394)
. ..+++|+-+ +.....-..-.+--.+++|-|.|+++|+... ...|.+|. ++|..-..+... ......+..+
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEE
Confidence 2 578999876 3322221111222236799999999998764 34566776 334332222221 1134568999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEecc-CCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCC----CCC---
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVV--SSLVS-HTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQ----HSL--- 311 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~-h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~----~~~--- 311 (394)
.|++++.+|+.--.|. |.+|-..+..-. +.+.. ....+..+.|+|..++ |...+.+|.+..++.. ...
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999977655 999998776422 22221 2334555889987553 5555555666554431 000
Q ss_pred -----------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--------EE
Q 016187 312 -----------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--------CV 354 (394)
Q Consensus 312 -----------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--------~~ 354 (394)
..........|.+++|++++..+++-..||.|.+|...... ..
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~ 469 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL 469 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence 00111245678999999999889999999999999743221 11
Q ss_pred EEeec----------ccCceeEEEEccCCCEEEEEeCC---CcEEEEecc
Q 016187 355 RTFSG----------HRDAIQAISVSAHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 355 ~~~~~----------h~~~v~~l~~~~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
..+.. -...+..++|..+..+++....+ ..+.++++.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 11211 13456788887777666655554 567777663
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-10 Score=94.12 Aligned_cols=224 Identities=16% Similarity=0.195 Sum_probs=145.3
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecc---cC---cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc--eEEEEcCCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSG---HG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPY 234 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~---h~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~ 234 (394)
.++-+-..|.|.++..........+.+ .. ....++.|++.+..++++-.+|.+.+-+..... ..+.++.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~--- 163 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV--- 163 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc---
Confidence 456667788888887654332222222 11 124577899999999999999999855543322 1223443
Q ss_pred cccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcEEEE-eccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCC-
Q 016187 235 HTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT-TGKVVSS-LVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQH- 309 (394)
Q Consensus 235 ~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~-~~~~~~~-~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~- 309 (394)
|........|+. +..++++|+.|+.+..||++ .++.+.. .+.|+..|.++.-+|. +.++++|+.|..|++||++.
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 455566666765 44688999999999999998 3344433 5668899999988864 66899999999999999984
Q ss_pred CCcceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC--e---EEEEeecccCceeEEEEccCCCEEEEEe-CC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSG--D---CVRTFSGHRDAIQAISVSAHQDFLVSVS-LD 382 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d 382 (394)
.++.....-.++|..+.++|.-. .|+.++.-.-.+|-+.... + .+..++.|..-+..-.|......||||+ .|
T Consensus 244 ~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYD 323 (339)
T KOG0280|consen 244 GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYD 323 (339)
T ss_pred cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccc
Confidence 34444444457899999988643 3333444444566654432 2 3344556664444444433345688876 68
Q ss_pred CcEE-EEe
Q 016187 383 GTAR-VFE 389 (394)
Q Consensus 383 g~i~-iw~ 389 (394)
+.++ +|-
T Consensus 324 k~~~~~Wl 331 (339)
T KOG0280|consen 324 KKIRQLWL 331 (339)
T ss_pred cceeeeee
Confidence 8766 774
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-09 Score=98.71 Aligned_cols=264 Identities=16% Similarity=0.120 Sum_probs=164.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
+.++++++.++.|..+|..+|+.+-............. .++..++.++.++.++.+|..+++.+-...... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 66888888999999999999998765543332111121 246678888899999999998887665433222 221110
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc--cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT--EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
.. .+..++.++.+|.|..||.++++.+.......... ....+..+. +..++.+..++.+..+|+.+|+.+-+...
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998766554321000 000011111 24677888899999999999986643321
Q ss_pred CCC----C---EEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 277 HTD----S---IECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 277 h~~----~---i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
... . ...+.-+| .+..++.++.+|.+..||..+........... .... ...+..|+.++.+|.|+.+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p--~~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGP--AVDDNRLYVTDADGVVVALD 295 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCc--eEeCCEEEEECCCCeEEEEE
Confidence 100 0 00000011 24567778889999999998765444332211 1111 12456788888999999999
Q ss_pred CCCCeEEEEeecccC-ceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 348 SLSGDCVRTFSGHRD-AIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+|+.+-++..... ....... .+..|+.++.+|.+.+++..+.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 999988766532222 2222222 3568888999999999987654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=112.50 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=186.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEecCCCCEEEEEEcCCC--CEEEEecCCCeEEEEeCCc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~d~~i~iw~~~~ 180 (394)
..++.++..+|.|+-+|.++.-|- .+-|+... +.+..+.. -.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 456788999999999999988774 44454432 22322221 134456777653 3444444445566787643
Q ss_pred ---cceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 181 ---AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 181 ---~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
......+.||+..++.+.|+|.. ..+++++.|..+..||+++.... .... ....+.+.+.|+-....+++.+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---cccccCceeeecccCcchhhhc
Confidence 23344567899999999999854 57899999999999999876532 2211 1123456678887766777778
Q ss_pred CCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCC
Q 016187 256 KDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 256 ~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~ 331 (394)
...-|++||++.| .++..++.|...|+.+.|..- ...+.+.+.|++|++||-.+... ........++.--.+.|-+
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 8889999999876 577888899999999988753 34578899999999999765422 2222233444444444443
Q ss_pred CEEEE-----------EeCCCeEEEEECCCC-eEEEEeecccCceeEEEEccCCC----------EEEEEeCCCcEEEEe
Q 016187 332 KYVVT-----------GCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSAHQD----------FLVSVSLDGTARVFE 389 (394)
Q Consensus 332 ~~l~s-----------g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~----------~l~s~s~dg~i~iw~ 389 (394)
.-... ---+.....|++.++ +.+.+|.||.+.|....|-..+. .|+|=|.|.++|+|.
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 21111 112233344555444 56889999999998777753222 689999999999998
Q ss_pred ccC
Q 016187 390 IAD 392 (394)
Q Consensus 390 ~~~ 392 (394)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-09 Score=107.47 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEEec--C------------CCCEEEEEEcCCCCEEEEe-cCCCeEE
Q 016187 111 SSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEG--P------------GGGVEWVSWHPRGHIVLAG-SEDSTVW 174 (394)
Q Consensus 111 ~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~~~-s~d~~i~ 174 (394)
..+++++. |+++++-+.++.|+++|.. +.....+.. . -.....+++.++++.|+.+ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5667777788899999975 444433322 1 0124678899888765554 4457899
Q ss_pred EEeCCccceeeeeccc-----------------CcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC---
Q 016187 175 MWNADRAAYLNMFSGH-----------------GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHP--- 233 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--- 233 (394)
.+|..++.. ..+.+- -.....++|+| ++..+++.+.++.|++||..++... .+.+..
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999876542 222110 11345789999 5666677788899999998776532 221110
Q ss_pred ---------CcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEe-------------ccC--------CCCEE
Q 016187 234 ---------YHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVVSSL-------------VSH--------TDSIE 282 (394)
Q Consensus 234 ---------~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~-------------~~h--------~~~i~ 282 (394)
..-.....++++|++. ++++.+.++.|++||+.++...... -.+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0112355689999987 5566677899999999876532110 000 11245
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc--------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD--------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.+++++++.++++-+.+++|++||..+.......+ .-.....++++++++.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999988888999999999987654332221 1124678899999999899899999999999
Q ss_pred CCCeE
Q 016187 349 LSGDC 353 (394)
Q Consensus 349 ~~~~~ 353 (394)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-10 Score=103.07 Aligned_cols=276 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------eEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
....|++|+....++|.|+.||.++|..+.+.. .-.++.+|.+.|.-+.|+.+...|-+...+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999998765321 11356789999999999999999999999999
Q ss_pred EEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCCC
Q 016187 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
|.+|-+-.+.-...+- ...+.|.++.|+.+|..++....||.|.+=.+..++.. +.+++ .-...+.|++|..
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg-----~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG-----QLLAHVLWSEDLE 169 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch-----heccceeecccHH
Confidence 9999987665332221 23456789999999999999999999887665443221 11222 1245678999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-------EEEE----eccCCCCEEEEEE--------CCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 250 LALSGSKDGSVHMVNITTGK-------VVSS----LVSHTDSIECIGF--------SRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-------~~~~----~~~h~~~i~~v~~--------~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.++.+-..|.++++|....- +... +......|..+.| -|+.+.||.+-..|.+.|-.-...
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99999999999999975421 1111 1111112333333 368889999999999887543322
Q ss_pred CcceeccCCCCEEEEEEeCCCCEEEEEeCCC---------eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 311 LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---------KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
.......-.-.+..+.|+++|..|+.++.+. .|.++. .-|+.+..++.....|+++.|-..|-.+|-+ .
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 2222222334577889999999999887542 466664 4688888898888889999998777666543 4
Q ss_pred CCcEEEEec
Q 016187 382 DGTARVFEI 390 (394)
Q Consensus 382 dg~i~iw~~ 390 (394)
|+.|.+=++
T Consensus 328 dsfiyfanI 336 (1189)
T KOG2041|consen 328 DSFIYFANI 336 (1189)
T ss_pred cceEEEEee
Confidence 666665544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-08 Score=89.91 Aligned_cols=304 Identities=16% Similarity=0.214 Sum_probs=182.3
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceEEEEecCCC
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG 150 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~-~i~vwd~~~~~~~~~~~~~~~ 150 (394)
|++.++.++|..|. |.+++.+...+-.+. -+|...|+-..+..+++-++.|..|| .+-|+|..+++... +...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 55556778877765 677776654443332 35788899999999999999999999 89999998887554 455678
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC----CcEEEEcCCCCceE
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~ 226 (394)
.|.++..+|+|+.++.+.....+++.|+.++.....-+..-+-|+..+|+|+++++|-+--+ ..|+++|+..++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 89999999999999999999999999999887654444456778999999999999976555 47899999887654
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEE----ECCCCCeEE-EEeCC
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIG----FSRSSPWAA-TGSMD 299 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~----~~~~~~~l~-s~s~d 299 (394)
.... ...+ =.+-+|.|++++|.--+. +-.|....+.+..+ ..+..+-..+. .+|-.+..- .-+.+
T Consensus 483 ~vTT-~ta~---DfsPaFD~d~ryLYfLs~----RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea 554 (668)
T COG4946 483 DVTT-PTAY---DFSPAFDPDGRYLYFLSA----RSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA 554 (668)
T ss_pred EecC-Cccc---ccCcccCCCCcEEEEEec----cccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence 3322 1111 223468889987754332 11233333333222 22222211111 111111110 11223
Q ss_pred CcEEEEeCCCCCcc---------eeccCCCC-EEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 300 QKLIIWDLQHSLPR---------STCDHEDG-VTCLMWLGTS---KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 300 g~i~iwd~~~~~~~---------~~~~~~~~-v~~~~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
+.+-+=++...... ...+.... |.-..+--.| .+.-.+-..|.+.+||+.+.+.- .-...+.+
T Consensus 555 ~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~----e~k~nvss 630 (668)
T COG4946 555 GEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVE----EYKDNVSS 630 (668)
T ss_pred cceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHH----HHhcccce
Confidence 33322222111000 00000000 1000000001 11112233456666665544321 22356889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+..|+|+.+++. -.||.+++++++-
T Consensus 631 ~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 631 FRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 999999999987 8899999999863
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-08 Score=84.02 Aligned_cols=264 Identities=11% Similarity=0.166 Sum_probs=168.7
Q ss_pred CCcEEEEeCCCC--ceE-EEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCc--cce--eeeecccCcCeEEE
Q 016187 128 DGLVQIWDPSSG--NLK-CTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADR--AAY--LNMFSGHGSSVTCG 197 (394)
Q Consensus 128 d~~i~vwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~--~~~--~~~~~~h~~~v~~~ 197 (394)
+.-|.+|++.+. +.. ..+....+.++.++|+|+.+.|.++-.+ +.+.-|.++. +.. +........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999987633 221 1222345678899999999988877654 6666665543 332 22222233444778
Q ss_pred EECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCccc----------CeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 016187 198 DFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTE----------GLTCLTISADSTLALSGSK-DGSVHMVNI 265 (394)
Q Consensus 198 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~g~~-dg~i~i~d~ 265 (394)
+++++|++|+++.. -|.|.++-+...-.+....+...|.. .+-+..+.|+++++++... --+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999988865 47899998865322111100001111 2677889999999888753 347999999
Q ss_pred CCCcEEEEec---cCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcc--ee---------ccCCCCEEEEEEeCC
Q 016187 266 TTGKVVSSLV---SHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPR--ST---------CDHEDGVTCLMWLGT 330 (394)
Q Consensus 266 ~~~~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~--~~---------~~~~~~v~~~~~~~~ 330 (394)
..|++...-. .......-|.|+|++++..... .+++|.+|........ .. ..-......+..+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8776432211 2334567899999999876554 5889999987653111 00 112334567778999
Q ss_pred CCEEEEEeC-CCeEEEEECC--CCeE--EEEeecccCceeEEEEccCCCEEEEEeCC-CcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDSL--SGDC--VRTFSGHRDAIQAISVSAHQDFLVSVSLD-GTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~~--~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g~i~iw~~~ 391 (394)
|++|.+.-. ...|-+|.+. ++++ +.....+...-..+.|++.+++|+.+.++ ..|.+|.++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999988643 2367777654 3432 22223344445789999999999988875 568888764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-07 Score=82.37 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=145.9
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 147 (394)
+..|.+.++.++.+--..+.|..|+..+++... +.... ...+++. ++|.++ .+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 567888677888888888999999988876543 22111 6677787 665544 45544 456669998876544432
Q ss_pred -----CCCCEEEEEEcCCCCEEEEecCC--------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCC
Q 016187 148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA 213 (394)
Q Consensus 148 -----~~~~v~~~~~~~~~~~l~~~s~d--------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg 213 (394)
.....+.+++.|+|++.++.... +.++.++.. ++..... ..-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence 33467889999999988776543 557777777 4433332 2345568899999999775 566778
Q ss_pred cEEEEcCCCCce-E---EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE-CC
Q 016187 214 TLRVWNPKSGEN-I---HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF-SR 288 (394)
Q Consensus 214 ~i~vwd~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~-~~ 288 (394)
.|..+++..... + ..+...+......-.+++..+|+++++....+.|.+++.. |+.+..+......+++++| .+
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 898888753221 1 1221111111236778999999999988899999999987 8888887766668999999 45
Q ss_pred CCCeEE
Q 016187 289 SSPWAA 294 (394)
Q Consensus 289 ~~~~l~ 294 (394)
+...|.
T Consensus 236 ~~~~L~ 241 (246)
T PF08450_consen 236 DGKTLY 241 (246)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-08 Score=91.12 Aligned_cols=298 Identities=14% Similarity=0.091 Sum_probs=175.0
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcc--c--------CEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHK--D--------SVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~--~--------~V~-~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.+.-+|..+++.+-...-.. . .+. .+.. ++..++.++.++.+..+|..+|+.+-.....
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 3445667777778887777554332111 0 000 1111 3556777888999999999999987665433
Q ss_pred CCCEEE-EEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE-EEEECC--CCCeEEEEeCCCcEEEEcCCCCc
Q 016187 149 GGGVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~-~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
.. +.+ ... .+..++.++.++.+..+|..+++.+-.+........ ...-+| .+..++.++.+|.+...|..+|+
T Consensus 150 ~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 150 GE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred Cc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence 22 211 111 244667788899999999998887655432211100 000122 23456777888999999998887
Q ss_pred eEEEEcCCCC-ccc---CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 225 NIHVIRGHPY-HTE---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 225 ~~~~~~~~~~-~~~---~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+........ ... ....+..+| .+..++.++.+|.+..+|+.+|+.+=+.... ....+.. .+..++.++.
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~ 302 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQ 302 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcC
Confidence 6544321100 000 000111122 2456667778999999999999866443211 1111111 3456777788
Q ss_pred CCcEEEEeCCCCCcceeccC-C-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE-EEEccCCCE
Q 016187 299 DQKLIIWDLQHSLPRSTCDH-E-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA-ISVSAHQDF 375 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~ 375 (394)
+|.+..+|..+......... . ....+... .+.+|+.++.+|.|++.|..+|+.+.+++-....+.+ ..+ .+..
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~ 378 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK 378 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence 99999999876644332211 1 11111111 2567888999999999999999998877643333332 222 2457
Q ss_pred EEEEeCCCcEEEEec
Q 016187 376 LVSVSLDGTARVFEI 390 (394)
Q Consensus 376 l~s~s~dg~i~iw~~ 390 (394)
|+.++.||.+..+++
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 888899999888765
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-10 Score=98.09 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=188.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC---CeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSS 138 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~---~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~i~vwd~~~ 138 (394)
|.+.|+.+.... ..++.+++.|+.+++|.-.. -+++..+..|...|.+++.+-+|.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 888898887654 56889999999999998533 3566677889999999999999999999887 99999999887
Q ss_pred CceEE--EEecCCCCEEEEEEcCCC---CEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 139 GNLKC--TLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 139 ~~~~~--~~~~~~~~v~~~~~~~~~---~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
..... .+....+.+.++. ++.. .+.++...++.+.++|-.... ....-.-|..+|.++.++|.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 65442 2222233333321 2221 233344467899999965432 22333458999999999999999999999
Q ss_pred CCcEEEEcCCC-Cc-----eEEEEc------CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---
Q 016187 212 DATLRVWNPKS-GE-----NIHVIR------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--- 276 (394)
Q Consensus 212 dg~i~vwd~~~-~~-----~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--- 276 (394)
.|.|.-|.... -+ ....++ +.+-.....+++.++|++..+.+-+.|.+|++++.++|++++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 11 101111 0111223467899999999999999999999999999876554321
Q ss_pred -----------------------------CC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCC-----
Q 016187 277 -----------------------------HT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDG----- 321 (394)
Q Consensus 277 -----------------------------h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----- 321 (394)
|. ..-..+.|...+.+|+.++.=| |++.++.+.......+....
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~ 323 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTR 323 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhh
Confidence 10 1123456888888888876554 67777655433222211100
Q ss_pred --------------E-------EEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 322 --------------V-------TCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 322 --------------v-------~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
. ..+.+.+|...+.++-...+.++|
T Consensus 324 ~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 324 LSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 112245566677777777888888
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=84.43 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=141.4
Q ss_pred EEEEEcCC----CCcEEEEecCCCeEEEEEcCCCeee-EeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 016187 68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 68 ~~~~~~p~----~~~~lasg~~d~~v~~w~~~~~~~~-~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
..+.|-|. .-.+||.||.-|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.++..+-.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34556663 1247899999999999998865432 333445444432222222 23567789999999998875544
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ce-eee-ecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AY-LNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~-~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
...+....-.+..++++++++++++.+....|..|.+... .+ .+. ...-.+.-.+..|+.....+|++.+||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 3333222233788999999999999999999999988643 22 221 22233444678899999999999999999999
Q ss_pred cCCCCceEEEE--cCCCCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 219 NPKSGENIHVI--RGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 219 d~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~--~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
|++........ ...+.|.+.++.+.|++-|. +|+..-.=+.+++.|+++++-.+.+
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 99876543322 22344788899999998654 5555556678999999998755443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-08 Score=90.57 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=128.2
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
..+.+=|.........+.+ . .+....|||||+. ++..+.. ..|.++|+.+++...... ..+......|+|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3444444433332223333 3 7788999999985 6544433 568889998887654333 445566788999998
Q ss_pred EEE-EecCC--CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSED--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.++ +.+.+ ..|+++++.++...+ +..+........|+|||+.|+-.+. .+ .|.+.|+.+++....... .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----G 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----C
Confidence 654 44333 568888887766433 3333332334579999998776553 33 577778877664332211 1
Q ss_pred cCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC-Cc--EEE
Q 016187 237 EGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD-QK--LII 304 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d-g~--i~i 304 (394)
. ....|+|+|+.++..+.. ..|.+.|+.++.. ..+... .......|+|+++.++..+.. +. +.+
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 1 123799999988766543 3688889887764 334332 233457899999987665533 22 444
Q ss_pred EeCCC
Q 016187 305 WDLQH 309 (394)
Q Consensus 305 wd~~~ 309 (394)
.++..
T Consensus 397 ~~l~g 401 (419)
T PRK04043 397 IRLNY 401 (419)
T ss_pred EecCC
Confidence 45443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-08 Score=84.65 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=140.1
Q ss_pred CCcEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 128 DGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
+++|..||..+|+.+-..... ....... ..+.+..+++++.++.++.||..+++.+-.+... ..+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence 688999999999988766531 1222211 2335667777789999999999988876555431 1111111 224556
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEE-cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCC----
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS---- 280 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~---- 280 (394)
++.++.++.|+.+|..+|+.+... ..................+..++++..++.|..+|+++|+.+-........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999987763 321100011122222233778888888999999999999988776553322
Q ss_pred ------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 281 ------IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 281 ------i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
+..-....++ .+..++.++.+..+|+.+........ ...+.. .....+..|+.++.++.|.+||+.+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1122222234 66667777754334988776443222 222222 13567788888889999999999999876
Q ss_pred E
Q 016187 355 R 355 (394)
Q Consensus 355 ~ 355 (394)
-
T Consensus 236 W 236 (238)
T PF13360_consen 236 W 236 (238)
T ss_dssp E
T ss_pred e
Confidence 4
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=105.42 Aligned_cols=237 Identities=20% Similarity=0.296 Sum_probs=156.7
Q ss_pred EEEEEEcCCC--CcEEEEecCCCeEEEEEcCCC---eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc
Q 016187 67 VYSVACSPTD--ATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 67 v~~~~~~p~~--~~~lasg~~d~~v~~w~~~~~---~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~ 140 (394)
|-.+.|+|.. ...+++.+..+. .+|++... .....+.||...|+.+.|.|.. ..|++++.|..+..||+.+..
T Consensus 70 vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 4445666542 345555554444 47887532 3345678999999999999876 579999999999999998764
Q ss_pred e-EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEE
Q 016187 141 L-KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRV 217 (394)
Q Consensus 141 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~v 217 (394)
. ......-...-..|+|+-....+++.+..+.+++||.+.+ ..+..+++|...+..++|.. --..+.+++.||+|+.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 3 3333333444567889887777777788899999998754 56778888999999998876 3346789999999999
Q ss_pred EcCCCCceE--EEEcCCCCcccCeEEEEEcCCC--CEEEE---------EeCCCcEEEEECCC-CcEEEEeccCCCCEEE
Q 016187 218 WNPKSGENI--HVIRGHPYHTEGLTCLTISADS--TLALS---------GSKDGSVHMVNITT-GKVVSSLVSHTDSIEC 283 (394)
Q Consensus 218 wd~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~l~~---------g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~ 283 (394)
||......- +.+. ...++.--.+-|-| .++.- --.+.....|+..+ .+++.++.+|.+.|..
T Consensus 229 w~y~kSt~e~~~~vt----t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVT----TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE 304 (1081)
T ss_pred ecccccccccceecc----ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH
Confidence 997643211 1111 11122222233322 22211 11122233344433 3678999999988766
Q ss_pred EEECCC----------CCeEEEEeCCCcEEEEeCC
Q 016187 284 IGFSRS----------SPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 284 v~~~~~----------~~~l~s~s~dg~i~iwd~~ 308 (394)
..|-.. .-.|++=|.|.++++|-+.
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 555332 2259999999999999875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=97.12 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=107.4
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCcEEE
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALS---GSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~---g~~dg~i~i~d~~~~~~~~ 272 (394)
+..++.+++||.+..+....++++..... .+.+.... .....+.+.+..+...+.. ++....+.+|....+.+ .
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~ 145 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-E 145 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-c
Confidence 45677888888888888877777654432 11111100 1112233333333333333 44555666676655443 3
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
.+.+|-..+..|+++||+++++++..|..|++-.... .... ...+|..-|..++..++ ..|++||.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 4568999999999999999999999999999855432 2222 33579999998887655 4589999999999999999
Q ss_pred CeEEEEee
Q 016187 351 GDCVRTFS 358 (394)
Q Consensus 351 ~~~~~~~~ 358 (394)
|+++..+.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 99987654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=95.21 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCCCeEEEE---eCCCcEEEEeCCCCCcce
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPWAATG---SMDQKLIIWDLQHSLPRS 314 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~~~l~s~---s~dg~i~iwd~~~~~~~~ 314 (394)
+..++.+++++++..+....+++..... ++.... -...-+++.|..+......+ +....+.+|.......+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 3456778888888888877777765432 222221 12223344444444444433 344455566555566677
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+|-..++.++++||+++|+++..|..|++-.....-.+..| -||+..|..++..++ ..|+|+|.|+++++|++..+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 7899999999999999999999999999999876655556665 489999999999765 45899999999999999876
Q ss_pred C
Q 016187 394 K 394 (394)
Q Consensus 394 ~ 394 (394)
|
T Consensus 226 k 226 (390)
T KOG3914|consen 226 K 226 (390)
T ss_pred C
Confidence 5
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-08 Score=87.66 Aligned_cols=213 Identities=14% Similarity=0.213 Sum_probs=144.7
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-C-----CC-----CEEEEE-EcC-CCCEEEEecCCCeEEEEeCCccc
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-P-----GG-----GVEWVS-WHP-RGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~-----~~-----~v~~~~-~~~-~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
+.||+.++ -+..|.|.++|..+.++...--+ + .. +...+. |++ +|.+++..|. |...+.+...+.
T Consensus 275 nsDGkrIv-Fq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIV-FQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEE-EecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 45777664 34567899999887654321111 0 00 111111 232 4677777665 555565555554
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCC-cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
.++. +|...|.-..+.-+++-++.|..|| .+-|+|..+++.-...+ .-+.|..+..+++|++++++.....|.
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCceEEE
Confidence 4443 5777788888888888899999999 89999998876433322 345689999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC----cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ----KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 336 (394)
+.|+.+++...--+...+-|....|+|+++|+|-+--+| .|+++|+..............=.+-+|.|++++|.-
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 999999987655556678899999999999999876655 689999876543322211111123366777776654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-07 Score=76.85 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=143.1
Q ss_pred EEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEEC-CCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 153 EWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 153 ~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
..+.|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. +++ .|+.+... .+.++|+.+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 3567887 66677777788999999998776433 22222 5667777 565 45555544 45566988875443333
Q ss_pred C--CCCcccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE-EEeCC
Q 016187 231 G--HPYHTEGLTCLTISADSTLALSGSKD--------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA-TGSMD 299 (394)
Q Consensus 231 ~--~~~~~~~i~~~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~-s~s~d 299 (394)
. ........+.+++.|+|++.++.... |.|..++.. ++.. .+...-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCcchheeeccccc
Confidence 2 11123457789999999988876644 567778877 5433 3333345678999999998765 66777
Q ss_pred CcEEEEeCCCCCc-----ceecc--CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc-
Q 016187 300 QKLIIWDLQHSLP-----RSTCD--HE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS- 370 (394)
Q Consensus 300 g~i~iwd~~~~~~-----~~~~~--~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~- 370 (394)
++|..|++..... +.... .. ...-.+++..++++.++.-..+.|.+++.. |+.+..+.--...+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8888888753221 11111 11 236778999999988888889999999987 99888887555588999994
Q ss_pred cCCCEEE
Q 016187 371 AHQDFLV 377 (394)
Q Consensus 371 ~~~~~l~ 377 (394)
++.+.|.
T Consensus 235 ~~~~~L~ 241 (246)
T PF08450_consen 235 PDGKTLY 241 (246)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 5655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-09 Score=86.68 Aligned_cols=240 Identities=18% Similarity=0.356 Sum_probs=158.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCC------------CCEEEEEEcCCC--CEEEE
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRG--HIVLA 166 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 166 (394)
..+.|+++.|...|.||++|...|.|.++.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45779999999999999999999999999754332 112233332 246677777654 35667
Q ss_pred ecCCCeEEEEeCCccc--------------------e-----------------e-----eee-cccCcCeEEEEECCCC
Q 016187 167 GSEDSTVWMWNADRAA--------------------Y-----------------L-----NMF-SGHGSSVTCGDFTPDG 203 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~--------------------~-----------------~-----~~~-~~h~~~v~~~~~~~~~ 203 (394)
.+.|.+|++|.+.... . + +.+ ..|..-+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999764320 0 0 011 3566778889999988
Q ss_pred CeEEEEeCCCcEEEEcCCCCceEE---EEcCCCC--cccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE------E
Q 016187 204 KTICTGSDDATLRVWNPKSGENIH---VIRGHPY--HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------V 271 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~------~ 271 (394)
+.++++ .|-.|.+|++....... -++.+.. ...-|++..|+|. ...+...+..|.|++-|++...+ +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888775 56789999986543222 2222211 1234777888885 45667788899999999985321 1
Q ss_pred EE----------eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccceec-c------------CCCCE---EE
Q 016187 272 SS----------LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTC-D------------HEDGV---TC 324 (394)
Q Consensus 272 ~~----------~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~-~------------~~~~v---~~ 324 (394)
.. +.+-...|..+.|+++++++++-+. -+++|||.... .+.... - ..+.| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1112356889999999999987654 57999998642 222211 1 12223 34
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEE
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.|+.+...+++|+.....-++-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 67888889999998888777775
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-07 Score=76.34 Aligned_cols=238 Identities=16% Similarity=0.212 Sum_probs=139.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--ce--EEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 113 LAFSMDGQLLASGGLDGLVQIWDPSSG--NL--KCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d~~i~vwd~~~~--~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
++.+.+|+.||.- .|..|.|-..+.. .. .+.+ +.+...-+.++|+|++.+||.+...|+|+++|+........-
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5677889888755 5677777654432 11 2222 223344577999999999999999999999998754332211
Q ss_pred ccc------CcCeEEEEECCCC------CeEEEEeCCCcEEEEcCCCC-----ceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 188 SGH------GSSVTCGDFTPDG------KTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 188 ~~h------~~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
.++ ...|..+.|.+.. ..|+.-...|.++-|-+..+ +..+.+........+|+++.++|.-++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 111 2455666665421 24666677888887765332 333444443445678999999999888
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE--EEEeCCC------cEEEEeCCCCCc-ceeccCCCC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA--ATGSMDQ------KLIIWDLQHSLP-RSTCDHEDG 321 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l--~s~s~dg------~i~iwd~~~~~~-~~~~~~~~~ 321 (394)
|++|+.... ..+. -.+-...+++=.+-.+.++. ++...|+ +..+|.+-.... .........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 887764322 0000 00111122222222222211 1111111 112233221100 011223567
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 361 (394)
|..+..+|++..||+...+|.|.+|++.+-++.++++-+.
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 8999999999999999999999999999888887766444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=77.55 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=156.5
Q ss_pred CcEEEEeCCCCc--eEEEEecCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEEC
Q 016187 129 GLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 129 ~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~ 200 (394)
..+.+|+.-+.. .+... +.+.|.| ...+|+.|+..|.+.+|...+.+ ..+....|...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 456777765433 22222 2244555 33588999999999999987543 333344444333211111
Q ss_pred CC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEE-Eecc
Q 016187 201 PD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVS-SLVS 276 (394)
Q Consensus 201 ~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~-~~~~ 276 (394)
.+ .-.+..++.|.++++.++..+.....+.. ..-.+.++.++++++++++-+....|..|.+... ..+. ....
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeec---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 11 22466778899999998765443222211 1123788999999999999999999999988643 2333 2233
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc------ceeccCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP------RSTCDHEDGVTCLMWLGTSK--YVVTGCVDGKVRVWDS 348 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~iwd~ 348 (394)
-++.-.+..|+.....+|++..||++.|||++.... ...-.|.+.+..+.|++.|. +|+-.-.-+.+.+.|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 345566788999999999999999999999875321 11234788899999998653 4444444578999999
Q ss_pred CCCeEEEEee-------ccc-CceeEEEEccCCCEEEEEeCC
Q 016187 349 LSGDCVRTFS-------GHR-DAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 349 ~~~~~~~~~~-------~h~-~~v~~l~~~~~~~~l~s~s~d 382 (394)
++++..+.+. .|. ..|..-.|+.++..+.+...+
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 9987665432 222 337777777766655544443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-07 Score=78.75 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=137.0
Q ss_pred CCeEEEEEcCCCeeeEeecC---cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
++++..||..+++.+-...- ....+ +. ..+++.++++++.++.|..||..+|+.+........ +.... ...+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eeccc
Confidence 56778888888876655532 22222 11 233567788889999999999999998877664222 11111 22345
Q ss_pred EEEEecCCCeEEEEeCCccceeeee-cccC---cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc-c
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-E 237 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 237 (394)
.++.++.++.++.+|..+++.+... .... ...........+..++.+..++.|..+|+++|+.+.......... .
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 5666668889999999988877653 2221 111122222347888888889999999999999877665422111 1
Q ss_pred ------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 238 ------GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 238 ------~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.+..-.+..++ .++.++.++.+..+|+.+++.+-+.. ...+... ....+..|+.++.++.+..||+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12222233344 77777777764444999998654332 2223221 34566777877799999999998765
Q ss_pred c
Q 016187 312 P 312 (394)
Q Consensus 312 ~ 312 (394)
.
T Consensus 234 ~ 234 (238)
T PF13360_consen 234 V 234 (238)
T ss_dssp E
T ss_pred E
Confidence 4
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-07 Score=83.77 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=121.9
Q ss_pred CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe-EEEEeC---CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 171 ~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
..|.+-|..... .+.+.... ....-.|+|+|+. ++..+. ...|.++|+.+++...... .........|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECC
Confidence 345554544332 22222223 6677899999985 554333 3468889998887544332 123345678999
Q ss_pred CCCEEEE-EeC--CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CC--cEEEEeCCCCCcceeccCCC
Q 016187 247 DSTLALS-GSK--DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQ--KLIIWDLQHSLPRSTCDHED 320 (394)
Q Consensus 247 ~~~~l~~-g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~ 320 (394)
||+.++. .+. +..|.++|+.+++. ..+..+........|+|+++.++-.+. .+ .|.+.|+.....+.......
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
Confidence 9986654 333 35688889877763 344444333334579999987766553 34 46667776654433222111
Q ss_pred CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 321 GVTCLMWLGTSKYVVTGCVD---------GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
....|+|++++|+..+.. ..|.+.|+.++.. +.++... ......|+|||+.|+-.+.
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEc
Confidence 124899999988876543 3688889887764 4454332 3346889999998776554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-06 Score=72.07 Aligned_cols=229 Identities=16% Similarity=0.181 Sum_probs=125.1
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCcc--ceeeeeccc---CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 155 VSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
++.+.+|++||. -+|..|.|=..+.. ..+...+-. ...-..++|+||+..||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 344556665544 45666665543321 111222212 22346789999999999999999999999864 444444
Q ss_pred cCCCC----cccCeEEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CcEEEE--ecc-CCCCEEEEEECCCCC
Q 016187 230 RGHPY----HTEGLTCLTISAD------STLALSGSKDGSVHMVNITT-----GKVVSS--LVS-HTDSIECIGFSRSSP 291 (394)
Q Consensus 230 ~~~~~----~~~~i~~~~~~~~------~~~l~~g~~dg~i~i~d~~~-----~~~~~~--~~~-h~~~i~~v~~~~~~~ 291 (394)
..... ....|..+.|-+- ...|++-...|.++-+-+.. .+...+ +.. +...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32110 1223444444321 12455555667666555422 122222 322 367899999999988
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEE--EEEeCCCe------EEEEECCCCeEEEEeecccCc
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV--VTGCVDGK------VRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~sg~~dg~------i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+|+.|+.... +. ........++++=....+..+. ++...|+. -.+|.+.+.+...........
T Consensus 161 LLlVgG~~~~------~~---~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 161 LLLVGGCEQN------QD---GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEEeccCCC------CC---ccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 8777764322 00 0000111222222222222111 12222221 233443333332222334567
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
|..|..|||+..||+..-.|.|.+|++..++
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 9999999999999999999999999998754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-10 Score=105.59 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=175.3
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC--eEEEEe
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWN 177 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~--~i~iw~ 177 (394)
..+++.|...-+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+... -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 356778999999999999999999999999999999999999888999999999999888998777766544 356898
Q ss_pred CCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 178 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
... +.....|. .-.++.|+...+.-+.|..-....+||+.++..+.+ +.+.......-++..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 754 23333332 335678887655545555556788999999876554 222111222346788999999887
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
.||. +||.+..+.++.+...+..+.. .|+|+|.-++..+ .|||+++.........- .-+.+.|+..|..+.
T Consensus 1247 ndGv--LWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1247 NDGV--LWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred eCce--eeeeccHHHHhhhhhheecccc-cccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccchh
Confidence 4553 6999988777666544433322 4899998887765 58999875332211100 113445655554332
Q ss_pred EEe-----------C--C----CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 336 TGC-----------V--D----GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 336 sg~-----------~--d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
+.- . + ...+-|+...-..+.++.+ ...|..++-.|...++..-
T Consensus 1318 a~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1318 AMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred hhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence 221 0 0 1234455555666666665 3456777777777776653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=64.01 Aligned_cols=39 Identities=51% Similarity=0.854 Sum_probs=37.2
Q ss_pred CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
|++++++.+|.+.|++|+|+|++++|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-09 Score=63.18 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=36.2
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
+++.++++|.++|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-06 Score=72.70 Aligned_cols=227 Identities=15% Similarity=0.209 Sum_probs=145.7
Q ss_pred EEEEEcCCCCcEEEEecCCCe-EEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC-----CcEEEEeCC-C
Q 016187 68 YSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD-----GLVQIWDPS-S 138 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~-v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d-----~~i~vwd~~-~ 138 (394)
..++.+|.....+|-+-.-++ ..+||..+++....+....+.- ---.||+||++|+|.-.| |.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 356778866666776666555 4679998888776553221111 014699999999987544 789999998 5
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEec------------------CCCeEEEEeCCccceeee--e--cccCcCeEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------------------EDSTVWMWNADRAAYLNM--F--SGHGSSVTC 196 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------------------~d~~i~iw~~~~~~~~~~--~--~~h~~~v~~ 196 (394)
.+.+..+..+.-....+.+.|+++.|+.+- ++.++...|..+++.+.. + .-|..++..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 556667766655566788999997666542 233455556667776655 3 337778999
Q ss_pred EEECCCCCeEEEEeCCCc-------EEEEcCCCCceEEEEcCCC----CcccCeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 016187 197 GDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLAL-SGSKDGSVHMVN 264 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~-~g~~dg~i~i~d 264 (394)
+++.++|..++..-..|. |-+++. ++.+..+.... .....+-++++++++..++ ++-..+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 999999876666544332 233332 22222222110 1234688999999998765 455778999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
..+++.+....- ..+..++-.+++ +++|.+..
T Consensus 246 ~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 246 AATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCCCCEeecccc--CceeeeeecCCc-eEEeCCCc
Confidence 999998866532 344556666655 66665543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-06 Score=71.24 Aligned_cols=240 Identities=17% Similarity=0.234 Sum_probs=138.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCceEEEEecCCCCE--EEEEEcCCCCEEEEecC-----CCeEEEEeCC-c
Q 016187 111 SSLAFSM-DGQLLASGGLDGL-VQIWDPSSGNLKCTLEGPGGGV--EWVSWHPRGHIVLAGSE-----DSTVWMWNAD-R 180 (394)
Q Consensus 111 ~~v~~s~-~g~~l~t~s~d~~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-----d~~i~iw~~~-~ 180 (394)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -...|+++|++|++.-. .|.|-+||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3678888 4556667766665 5689999998887665443322 13689999999988643 4789999998 5
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEe------------------CCCcEEEEcCCCCceEEEEcCC-CCcccCeEE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGH-PYHTEGLTC 241 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~ 241 (394)
-+.+..+..|.-....+.+.|||+.|+.+- .+-++.+-|..+|+.+...... ..|...++.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 567778888877777888999998887763 2223333444444443332211 112334555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDG 321 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 321 (394)
+++.++|..++..-..|-- ....++++.-..++.+......... .......
T Consensus 168 La~~~~G~V~~a~Q~qg~~--------------------------~~~~PLva~~~~g~~~~~~~~p~~~---~~~l~~Y 218 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDP--------------------------GDAPPLVALHRRGGALRLLPAPEEQ---WRRLNGY 218 (305)
T ss_pred EEecCCCcEEEEEecCCCC--------------------------CccCCeEEEEcCCCcceeccCChHH---HHhhCCc
Confidence 5555554443332221100 0011223333333333333322111 1122345
Q ss_pred EEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 322 VTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+-++++++++.++++.| ..+.+.+||..+++++....-.. +-.|+-.+++ +++|.+..
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecCCc-eEEeCCCc
Confidence 77888888887775554 46678888888888877654322 3355555554 55554443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-09 Score=89.08 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=119.6
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc----ceeeee
Q 016187 114 AFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMF 187 (394)
Q Consensus 114 ~~s~~--g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~----~~~~~~ 187 (394)
+|+-+ |-. ++.+.+..|-+-++.+|-... +. ..+.|.+..|+..+++++.|...|.|..+|++.. ......
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56543 323 566677788888888875432 22 5567888999999999999999999999999754 112223
Q ss_pred cccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce---EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 188 SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 188 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
-.|.+.|+++.... ++++|++.+.+|+|++||.+--++ +....+|......+ -+-+.+....+++++.|-..+||
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc-ccccccccceEEEccCeeEEEEE
Confidence 35899999998776 788999999999999999986665 66666654322222 23456778889999999999999
Q ss_pred ECCCCcEEEEecc
Q 016187 264 NITTGKVVSSLVS 276 (394)
Q Consensus 264 d~~~~~~~~~~~~ 276 (394)
.+..+.++.++..
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999999888754
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=87.90 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=130.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.++|++++ ...||-|..+|.+++.+.+. .. .+...|... ..+|.+++|||.||+|.|-.+-+.+..+
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 4567777776 35788999999999988643 32 344445544 6789999999999999999988887766
Q ss_pred EEecCCCCEEEEEEcCC-----CCEEEEecCCCeEEEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEE
Q 016187 144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~-----~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 216 (394)
++. -+.++..++++|+ .+.+++|+.-| +.++.-+=. +.........++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 554 3467899999997 56899999888 777653211 1111234456789999885 77888888777 89
Q ss_pred EEcCCCCceEEEEcCCCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
+||+.+++.+..+..... .......+.|.++.++++ |...+|++..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 999998887766543211 111233567776665544 345578888776
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-06 Score=80.69 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=154.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC--CEE-----EEEEcC--CCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--GVE-----WVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
+..+++++.++.+.-+|..+|+.+-....... ... .+.-.| .+..++.++.++.++.+|.++++.+-....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55777788888999999999987765443220 000 000011 245677788899999999998886654433
Q ss_pred cCcCeEE-EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 190 HGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--TEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 190 h~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
.. .+.+ -.+ .+..++.+..++.|.-+|..+|+.+-........ .....+-.+ .+..++.++.+|.+..+|..
T Consensus 149 ~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 149 AG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 22 1211 111 2456777888999999999999977665421100 000000011 12356677889999999999
Q ss_pred CCcEEEEeccCCC-------CEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 267 TGKVVSSLVSHTD-------SIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 267 ~~~~~~~~~~h~~-------~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|+.+-+...... ....+..+| .+..++.++.+|.+..+|+.+............ ..+. ..+..|+.+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~ 300 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLV 300 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEE
Confidence 8876543221000 000111122 244566777889999999887654443221111 1111 245678888
Q ss_pred eCCCeEEEEECCCCeEEEEeecccC-ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRD-AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.+|.+..+|..+|+.+-+...-.. ...+..+ .+.+|+.++.||.+...|..+
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 8999999999999987654332111 1222222 245677788889888887654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-08 Score=79.74 Aligned_cols=249 Identities=18% Similarity=0.179 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE------------EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
|+.+.|+.+ -.|+++..++.+.......+.+. ..+..+.++-.+-..+-.++-++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 34566666666655543332221 22222222211222233356789999999999998
Q ss_pred CCccce-eeee-cccCcCeEEEEECCCCCeEEEEeC-----CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CC
Q 016187 178 ADRAAY-LNMF-SGHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-ST 249 (394)
Q Consensus 178 ~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 249 (394)
.+.-.. ...+ ..|.+.. +..+...++.+.++.. -+..+.|+++-.+ .+.........+++++-+|. ++
T Consensus 118 ~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred chHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeecccccc---cccccccccccchhhhCCccccc
Confidence 765211 1111 1121111 1122223444444321 2234455543222 22211122345888888885 45
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEE
Q 016187 250 LALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 327 (394)
++++|+.||.+-+||.+... +...+..|..+|..+.|+|.. ..|++++.||.+.-||..+... ..
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l-------------~i 260 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL-------------SI 260 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE-------------Ee
Confidence 67788999999999998874 344567899999999999864 5799999999999999764211 11
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEE-------eecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRT-------FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++ ...+..|= .+..++. +..-...|+++.. .|+.|++|++-+.|++++
T Consensus 261 ~~~---------~s~~s~WL--sgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQ---------ASVISSWL--SGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCc---------cccccccc--cCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 111 12344441 2222211 1222334555443 568899999999998875
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-08 Score=79.18 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=102.3
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-eeEeecC-cccCEEEEEEcCCCCEEEEEeC-----CC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQG-HKDSVSSLAFSMDGQLLASGGL-----DG 129 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~-----d~ 129 (394)
...|..|+++-.+-+.+-. .+-+++++.|+.+.+.+.+... ....+.. |.+ -.+.++-..++.+.++.. -+
T Consensus 82 ~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeecc
Confidence 3444455544333333322 3457889999999999875411 0111111 111 112222234444444432 23
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECC-CCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l 206 (394)
..+.|++...+.+.........|.+++-+|. .+++++|+.||.+-+||.+.... ...+..|..++..+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 5566766544333222223345888888885 45778899999999999987643 345778999999999999 67899
Q ss_pred EEEeCCCcEEEEcCCC
Q 016187 207 CTGSDDATLRVWNPKS 222 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~ 222 (394)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-09 Score=87.97 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEE
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----NLKC 143 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~~~~ 143 (394)
+.++|+-...-+-++.|.+-.+-+-+++++-. +.|. .+..|.++.|...+.++..|..+|.|.+.|+..+ ....
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 33455532222224556677777888877643 2333 5677999999999999999999999999999765 2222
Q ss_pred EEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccce---eeeecccCcCeEEE--EECCCCCeEEEEeCCCcEEE
Q 016187 144 TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSVTCG--DFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~---~~~~~~h~~~v~~~--~~~~~~~~l~s~~~dg~i~v 217 (394)
..--|...|+++..-. ++.+|++.+.+|.|.+||.+-.++ +..+.||...-.-+ -..+....++++++|-..|+
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 3334778888888766 678899999999999999876655 88899996543333 34566778899999999999
Q ss_pred EcCCCCceEEEEc
Q 016187 218 WNPKSGENIHVIR 230 (394)
Q Consensus 218 wd~~~~~~~~~~~ 230 (394)
|.++.+..+.++.
T Consensus 373 Wsl~~ghLl~tip 385 (425)
T KOG2695|consen 373 WSLDSGHLLCTIP 385 (425)
T ss_pred EecccCceeeccC
Confidence 9999998776654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-09 Score=101.88 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=155.6
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC--cEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQ 132 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~--~i~ 132 (394)
.+-..|..|+...+|++|+- +.+.|+.|+..|.++++++.+|.......+|..+|+-+.-+.||..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 45566778999999999997 456788899999999999999999999999999999999999999877766544 356
Q ss_pred EEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee-cc---cCcCeEEEEECCCCCeEE
Q 016187 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SG---HGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 133 vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~ 207 (394)
+|++.+ +...+++.. -.++.|+.....-+.|..-....+||+++...+.++ .+ ....-+++.|+|+.++++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899764 344455443 346788876544455555567889999987655542 22 222336788999888775
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
- || .+||++..+.++.+....... .-.|+|.|.-++..+. |||+++-+.+++...-. -..|.|+
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~~~----~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFN 1310 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYG----GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFN 1310 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhheecc----cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEec
Confidence 3 44 379999887766654322111 2258899998887764 89999988776543221 2346677
Q ss_pred CCCCeEE
Q 016187 288 RSSPWAA 294 (394)
Q Consensus 288 ~~~~~l~ 294 (394)
..|..+.
T Consensus 1311 stG~VmY 1317 (1516)
T KOG1832|consen 1311 STGDVMY 1317 (1516)
T ss_pred cCccchh
Confidence 7776554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-05 Score=75.11 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=152.9
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc------CEE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~------~V~--~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~ 151 (394)
+..++.++.+.-.|..+++.+-...-... .+. .+... ++..++.++.++.|.-+|..+|+.+-........
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~ 142 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQV 142 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCc
Confidence 33456678888888888876544432211 110 11111 2257778888999999999999988665533210
Q ss_pred --EEEEEEcC--CCCEEEEec---------CCCeEEEEeCCccceeeeecccCc--------------------Ce-EEE
Q 016187 152 --VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGS--------------------SV-TCG 197 (394)
Q Consensus 152 --v~~~~~~~--~~~~l~~~s---------~d~~i~iw~~~~~~~~~~~~~h~~--------------------~v-~~~ 197 (394)
-..+.-+| .+..++.++ .++.++.+|..+++.+-.+..... .+ ...
T Consensus 143 ~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~p 222 (488)
T cd00216 143 PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASP 222 (488)
T ss_pred CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCe
Confidence 00011111 123444544 367888889888876544332110 01 123
Q ss_pred EECCCCCeEEEEeCCC------------------cEEEEcCCCCceEEEEcCCCC--cc-cC---eEEEEEc-CCCC---
Q 016187 198 DFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPY--HT-EG---LTCLTIS-ADST--- 249 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~--~~-~~---i~~~~~~-~~~~--- 249 (394)
++.+.+..++.++.++ .|.-.|..+|+..-....... .. .. ....... -++.
T Consensus 223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~ 302 (488)
T cd00216 223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP 302 (488)
T ss_pred eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence 4445566777777665 688899999987765432110 00 00 0001110 1233
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE------------------eCCCcEEEEeCCCCC
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG------------------SMDQKLIIWDLQHSL 311 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~------------------s~dg~i~iwd~~~~~ 311 (394)
.+++++.+|.+..+|.++|+.+-+.... ...++.+| ..+..+ ..+|.+.-.|+.+..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 6788889999999999999877543211 01122333 112111 134566666666554
Q ss_pred cceeccCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 312 PRSTCDHE---------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 312 ~~~~~~~~---------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
........ .....-.....+..|+.|+.||.|+.+|..+|+.+-+++-
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 43322211 1110000112457889999999999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=83.37 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=166.4
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-ceEEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCcc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~ 181 (394)
|.+.|+-+..+ -.+++.+++.||.++.|.... | +.+..+..|-+.+..++.+-++.++.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 88888777554 357899999999999997543 1 223334456677888888889999999777 999999998764
Q ss_pred ceeeeeccc--CcCeEEEEECCCC---CeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 182 AYLNMFSGH--GSSVTCGDFTPDG---KTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 182 ~~~~~~~~h--~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
..+..++-. ...+. ...+|.. ..-++.-.++.+.++|-....+ ....+ ..|..+|.++.+.+.+..+++..
T Consensus 87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEeeccccceeecc
Confidence 433222211 11111 1122211 2233445678999999775543 22222 24778999999999999999999
Q ss_pred CCCcEEEEECCC------CcEEEEec---------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-----
Q 016187 256 KDGSVHMVNITT------GKVVSSLV---------SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST----- 315 (394)
Q Consensus 256 ~dg~i~i~d~~~------~~~~~~~~---------~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----- 315 (394)
..|.|..|.... .++...+. -......++.|+|++..+++-+.|.+|+++++++......
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999999863 11111111 1234567899999999999999999999998765321110
Q ss_pred ----------c------------------cCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 316 ----------C------------------DHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 316 ----------~------------------~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
. .|.. .-+.+.|...+++|+-|+.=| |++.++.++.+++.+
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0 1111 124567888889998887665 888998888877654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=88.86 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=157.4
Q ss_pred EEEcCCCCEEEEEeC----CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 113 LAFSMDGQLLASGGL----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 113 v~~s~~g~~l~t~s~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
..|+|...+||.++. .|+|.|| ..+|++...+..+ -.+++++|||..-+|+.|-.-|.+.+|...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 468888888888764 4788888 4566644332221 124569999999889999999999999998877666677
Q ss_pred ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC-Cc-------------e--EEEEcCCCC--------------cccC
Q 016187 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GE-------------N--IHVIRGHPY--------------HTEG 238 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~-------------~--~~~~~~~~~--------------~~~~ 238 (394)
.|..++..+.|+++|..++++..-|.|.+|.... |+ . +..++...- ....
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a 178 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA 178 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence 8999999999999999999999999999997541 11 0 011110000 0000
Q ss_pred e------------EE--EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc----------CCCCEEEEEE-CCCCCeE
Q 016187 239 L------------TC--LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----------HTDSIECIGF-SRSSPWA 293 (394)
Q Consensus 239 i------------~~--~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------h~~~i~~v~~-~~~~~~l 293 (394)
+ .+ -.-.|+|..++.++.+|+|+..|-. |++...... ..+.|.++.- -.+.-++
T Consensus 179 lD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~ 257 (1416)
T KOG3617|consen 179 LDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIF 257 (1416)
T ss_pred hcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEE
Confidence 0 00 1124678888899999999988843 333222111 1122222111 0000000
Q ss_pred E-----------------EEeCCCcEEEEeCC---CCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCC--
Q 016187 294 A-----------------TGSMDQKLIIWDLQ---HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD-SLS-- 350 (394)
Q Consensus 294 ~-----------------s~s~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd-~~~-- 350 (394)
+ .|+..|.|..=... ......-......++|++++..+..|..|...|++.+|- +..
T Consensus 258 v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f 337 (1416)
T KOG3617|consen 258 VLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF 337 (1416)
T ss_pred ecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc
Confidence 0 01111111110000 001111122345799999999999999999999999994 222
Q ss_pred ----CeEEEEee---cccCceeEEEEccCCCEEEEEe
Q 016187 351 ----GDCVRTFS---GHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 351 ----~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s 380 (394)
+.-.-.+. .-.+.|..+.|+|-.+.++.-+
T Consensus 338 ~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 338 QGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 12222333 2346788899988655544433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=81.97 Aligned_cols=234 Identities=13% Similarity=0.216 Sum_probs=140.8
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----eeeeecccCc------------CeEEEEECCCC--CeEEEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHGS------------SVTCGDFTPDG--KTICTG 209 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~--~~l~s~ 209 (394)
...|+++-|...|.+|++|...|.+.+|.-+... ....+++|.. .|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568899999999999999999999999765432 2334566643 35566666543 356677
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEE-EeccCCCCEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVS-SLVSHTDSIE 282 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~-~~~~h~~~i~ 282 (394)
+.|++|++|.+... .++.+.... ...++ -+|-+.-+.+ -..|++-.+... ++.+ ....|.-.|+
T Consensus 106 tNdktiKlWKiyek-nlk~va~nn-ls~~~----~~~~~g~~~s---~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEK-NLKVVAENN-LSDSF----HSPMGGPLTS---TKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecc-cchhhhccc-ccccc----ccccCCCcCC---HHHhhcccccccceEEEeccceeccccceeEee
Confidence 88999999998643 222221110 00000 0111110000 000111111000 0011 1145788899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCcce----ecc-----CCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS----TCD-----HEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~-----~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~ 352 (394)
++.|..+...++++ .|=+|.+|++...-... ... ....|++..|+|... .+.-.+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999999888876 47789999875321111 111 123577888888754 45556778999999987322
Q ss_pred E------EE----------EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 353 C------VR----------TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 353 ~------~~----------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+ +. -|++-...|..+.|+++|+|+++-+. -+++|||+..-
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 1 11 12233456889999999999987764 57999998753
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-05 Score=61.80 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEE
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVE 153 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 153 (394)
.+.++.-|+..+.+.--|..+|++.- .+.+. -.-.++. -|.+++.|.+.|.+.+.+.++|.....+..-..-=.
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~R-iE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR-IECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCce-eeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 34566666777776666666665442 22211 1111222 377899999999999999999976555443221111
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.....+++.++..|+.|++++..|..+..++...+-.++...+=++.|-...|..+...|.|.--..
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 2345678889999999999999999988777664433333333344552223333444454443333
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-05 Score=73.62 Aligned_cols=183 Identities=13% Similarity=0.044 Sum_probs=114.2
Q ss_pred ECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEE
Q 016187 199 FTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD----GSVHMVNITTGKVVSS 273 (394)
Q Consensus 199 ~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~ 273 (394)
+.|||+.+. +.-..+.+.+.|..+.+....+.. ......+.++|+++++++.+.+ .++...+......+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe----CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 456676553 233346677888877665544432 1234557889999998887632 2333333222111111
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-----CCcceeccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 016187 274 LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-----SLPRSTCDHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWD 347 (394)
Q Consensus 274 ~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd 347 (394)
+.- ..+ .++.+++++... .+++|.+.|.++ ........-......+.++||++++++++ .+.+|.|.|
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 100 000 123446766554 367899999887 33333344455677889999999887765 488999999
Q ss_pred CCCCeE------------EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 348 SLSGDC------------VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 348 ~~~~~~------------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.+.+. +.+..--.++ ...+|.++|+.+.|.-.|..|..|+++.
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 877542 3344433344 4788999999999999999999999864
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-07 Score=86.51 Aligned_cols=181 Identities=17% Similarity=0.257 Sum_probs=134.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
++..++-|+-...+..+|+.+.+......-..+.|.-++. +++++.+|...|+|.+-|.++.+.++.+..|.+.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence 4556777877788888999888776665544445665554 4678999999999999999999999999999999875
Q ss_pred EECCCCCeEEEEeC---------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEC--
Q 016187 198 DFTPDGKTICTGSD---------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNI-- 265 (394)
Q Consensus 198 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~-- 265 (394)
|.-.|+.|++|+. |..|+|||++..+.+..+.. +.. ..-+.|.|. ...+++.+..|...+.|.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccC-chhhhhcccccceEEEEecccceeeccccc
Confidence 5557899999874 67889999987665543332 211 234556664 356778888999999983
Q ss_pred -CCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 266 -TTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 266 -~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
.+... +..+......+.++.+++++..+|.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32211 222223345599999999999999999999999997
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-06 Score=74.17 Aligned_cols=253 Identities=12% Similarity=0.123 Sum_probs=144.8
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s 208 (394)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+..|.+.|+++......+..+ ..+++++|.-+ .+++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666555556677778899999999887 7889999999999999999888888877 67888899875 467889
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE------EEcCCCCEEEEEeCCCcEEEEECCC--C--cEEEEeccCC
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL------TISADSTLALSGSKDGSVHMVNITT--G--KVVSSLVSHT 278 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~l~~g~~dg~i~i~d~~~--~--~~~~~~~~h~ 278 (394)
|-..|.|.+||++..+.............+|..+ ...+-+.+++....+ +..|++.- + .++..+ +..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCC
Confidence 9999999999998654321110000011122222 233345555544433 33444321 1 111111 112
Q ss_pred CCEEEEEECCCCCeEE-EEeC-----------------CCcEEEEeCCCCCcc-ee-ccCCCCEEEEEEeCCCCEEE-EE
Q 016187 279 DSIECIGFSRSSPWAA-TGSM-----------------DQKLIIWDLQHSLPR-ST-CDHEDGVTCLMWLGTSKYVV-TG 337 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~-s~s~-----------------dg~i~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~-sg 337 (394)
+...+++.++....++ +--. || --+|..+..... .. ..+. -..+.-.++.++|+ .|
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t--~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLST--TQAIRAVEDNNYIVVVG 407 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCccccccc--ccceeccccccEEEEec
Confidence 3334444444333322 2111 11 111111110000 00 0000 01122234455554 45
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc-CC-CEEEEEeCCCcEEEEeccC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA-HQ-DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~-~~l~s~s~dg~i~iw~~~~ 392 (394)
.....+.+||..+++.++++.- ..+|.++.... ++ .||+.-. |..++||+.+.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5667899999999999998875 47888876653 33 4555444 66688887653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-05 Score=76.99 Aligned_cols=208 Identities=13% Similarity=0.164 Sum_probs=137.4
Q ss_pred EEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC-eEEEEECCCCCeEEEEeCCC-----cEEEEcCCCC------
Q 016187 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICTGSDDA-----TLRVWNPKSG------ 223 (394)
Q Consensus 156 ~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~------ 223 (394)
+|++.+..++.|+.+|.|.+.+-. .+.++.++.+... |..+....+..+|++.+.|+ .|++|++..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 567888899999999999888753 2334566666655 44443344446788777665 4899998532
Q ss_pred ceE--EEEcCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEE--eccCCCCEEEEEECCCCCeEEE
Q 016187 224 ENI--HVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT--TGKVVSS--LVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 224 ~~~--~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~--~~~h~~~i~~v~~~~~~~~l~s 295 (394)
+++ +.+..+. ....++.+++++.+-+.+++|-.+|.|..+.-. ..+-.+. .....++|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 1222222 235678899999999999999999999988421 1111111 2234679999999988876444
Q ss_pred EeCCCcEEEEeCCCCCcce--eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCcee
Q 016187 296 GSMDQKLIIWDLQHSLPRS--TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQ 365 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 365 (394)
+..-..|.+|.+....+.. ...|...+.|..+++....++.++ +.-+++|+....+.--.|. ||.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 4456679999998554332 234556788888887655344443 4569999987666666777 7765443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=83.37 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=131.1
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 157 (394)
..+.-||-...+...|+++.+..+...--...|+-|. .++++|.+|...|+|.+-|+++.+..+++..|.+.+. .|
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--Df 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DF 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee--ee
Confidence 3444556556666677776665555443333465555 4578999999999999999999999999999999886 45
Q ss_pred cCCCCEEEEecC---------CCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCce--
Q 016187 158 HPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN-- 225 (394)
Q Consensus 158 ~~~~~~l~~~s~---------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~-- 225 (394)
.-+|++|++|+. |..+++||++..+.+.-+.-+.++ .-+.|+|. ...++.++..|...+-|+.+-..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 667889998875 456789999877665555444443 34678884 56788899999999999433211
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
......++ ....+..+.+++++..++.|..+|.|.+|--
T Consensus 303 ~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 303 AGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 11111112 2345899999999999999999999999973
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-05 Score=74.96 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=137.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC----ccce
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD----RAAY 183 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~----~~~~ 183 (394)
+.|.++.|..++..++.+...|.|.+-|..+..... ...-..+|.+++|+|+...++..+...++.+-.-. ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999999999999999988775432 23345679999999999999888888887764321 1111
Q ss_pred e-eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE-----eCC
Q 016187 184 L-NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-----SKD 257 (394)
Q Consensus 184 ~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-----~~d 257 (394)
+ ..... .+....+-|-.....+ -|+ .|....-+..... +.+... .....-+++.|-.||.++++. ..-
T Consensus 148 L~~d~~~-~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~e--k~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 148 LDADDER-KSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKE--KALEQI-EQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccc-ccccceecccccceee-ecc-hhhhccccccccc--ccccch-hhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1 00000 0111122222211111 111 1111111111000 000100 012234568899999998873 233
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE---eCCCcEEEEeCCC---CCcceec-cCCCCEEEEEEeCC
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG---SMDQKLIIWDLQH---SLPRSTC-DHEDGVTCLMWLGT 330 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~---s~dg~i~iwd~~~---~~~~~~~-~~~~~v~~~~~~~~ 330 (394)
..|++||-. |.+-..-......=.+++|-|.|.++|+- ..|+.|.+|.-.. +...... .....+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999976 44322222223334578999999998875 3466788886432 2111111 12233889999999
Q ss_pred CCEEEE---EeCCCeEEEEECCC
Q 016187 331 SKYVVT---GCVDGKVRVWDSLS 350 (394)
Q Consensus 331 ~~~l~s---g~~dg~i~iwd~~~ 350 (394)
+..|++ ......|++|-+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCceeeeecccccceEEEEEecC
Confidence 999887 45555699997543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00032 Score=64.41 Aligned_cols=281 Identities=17% Similarity=0.149 Sum_probs=148.1
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecC----------------
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGP---------------- 148 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~---------------- 148 (394)
.+...++|+++++....... ...+....|||+|+.+|-.. ++.|.+++..++.... +..+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 35688999999876554443 67788999999999998775 6789999987774332 11120
Q ss_pred CCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCc---CeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 149 GGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
-+.-..+-|+|++++|+.... +..+..+.+.. +..... .+..+.+-.-|..... -.+.|+|+.+++
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~ 169 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGK 169 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTC
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCc
Confidence 112245789999998876543 33343332210 001111 2223333212221111 136678887776
Q ss_pred eEEEEcC--CCCcccCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCcEEEEec-cCCCCE---EEEEEC-CCC-C
Q 016187 225 NIHVIRG--HPYHTEGLTCLTISADSTLALS--GSKDG---SVHMVNITTGKVVSSLV-SHTDSI---ECIGFS-RSS-P 291 (394)
Q Consensus 225 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~--g~~dg---~i~i~d~~~~~~~~~~~-~h~~~i---~~v~~~-~~~-~ 291 (394)
....-.. .......+..+.|.+++..++. ...+. .+.+.|..+++....+. .....| ....+. +++ .
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 4321111 0112345788999999883333 23333 46667877664322221 122222 244443 444 4
Q ss_pred eEEEEeCCCcEEE--EeCCCCCcceeccCCCCEEE-EEEeCCCCEEE-EEeCC----CeEEEEECCCCeEEEEeecccCc
Q 016187 292 WAATGSMDQKLII--WDLQHSLPRSTCDHEDGVTC-LMWLGTSKYVV-TGCVD----GKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 292 ~l~s~s~dg~i~i--wd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-sg~~d----g~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
++.....+|--.| ++......+......-.|.. +.+.++++.|. +|..+ ..|+.-++..+..++.++...+.
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 5555567776444 45555544433333444644 66778766554 55442 24666666634455667654433
Q ss_pred eeEEEEccCCCEEEE
Q 016187 364 IQAISVSAHQDFLVS 378 (394)
Q Consensus 364 v~~l~~~~~~~~l~s 378 (394)
-..+.|+|++++++-
T Consensus 330 ~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 330 HYSASFSPDGKYYVD 344 (353)
T ss_dssp TEEEEE-TTSSEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 358999999998774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-05 Score=76.43 Aligned_cols=239 Identities=11% Similarity=0.160 Sum_probs=137.3
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
+.|.++.|..+...++.+...|.|.+-|..+..... ...-...|.+++|+||++.++..+..+++.+-. .+-..+...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 578899999999999999999999999887664322 222356788999999999999988888775532 221111110
Q ss_pred cC--CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEe----CC-Cc
Q 016187 230 RG--HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGS----MD-QK 301 (394)
Q Consensus 230 ~~--~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s----~d-g~ 301 (394)
.. ..........+-|....+.+ -| ..|.....+.... +.+.... -.+.=..|.|-.+|.++|+.. .+ .+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee-ec-chhhhcccccccccccccchh-hccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 00 00000111112222211111 01 1111111111000 0000000 112224578999999998732 23 78
Q ss_pred EEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEEC---CCCeEEEEeecccCceeEEEEccCCCE
Q 016187 302 LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC---VDGKVRVWDS---LSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 302 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~iwd~---~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
+++||-.............--.+++|-|.|..+++-. .|+.|.+|.- +.|...-.+.....+|..++|+.++..
T Consensus 224 irV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 224 IRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 9999976322111111122235789999999988753 4667989863 223222223333445999999999999
Q ss_pred EEE---EeCCCcEEEEeccCC
Q 016187 376 LVS---VSLDGTARVFEIADF 393 (394)
Q Consensus 376 l~s---~s~dg~i~iw~~~~~ 393 (394)
||. ......|++|-+.++
T Consensus 304 LAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeeecccccceEEEEEecCe
Confidence 887 455556999998775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00029 Score=67.53 Aligned_cols=267 Identities=15% Similarity=0.125 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC------CEE--EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG------GVE--WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+..++.++.++.|.-.|..+|+.+-.+..... .+. .+... ++..++.++.++.++-+|.++++.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999987765543221 000 01111 2257778889999999999998876544332
Q ss_pred CcC--eEEEEECC--CCCeEEEEe---------CCCcEEEEcCCCCceEEEEcCCCCc----------------c-cCe-
Q 016187 191 GSS--VTCGDFTP--DGKTICTGS---------DDATLRVWNPKSGENIHVIRGHPYH----------------T-EGL- 239 (394)
Q Consensus 191 ~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~----------------~-~~i- 239 (394)
... -..+.-+| .+..++.++ .++.+.-+|..+|+.+-........ . ..+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 210 00011112 124455543 3678899999999876655431100 0 000
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCcEEEEecc--CCC----CEEEEEEC----CCC-
Q 016187 240 TCLTISADSTLALSGSKDG------------------SVHMVNITTGKVVSSLVS--HTD----SIECIGFS----RSS- 290 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~dg------------------~i~i~d~~~~~~~~~~~~--h~~----~i~~v~~~----~~~- 290 (394)
...++.+.+..++.++.++ .|.-+|+.+|+.+=+++. |.. ......+. -++
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234555567777777665 799999999987755431 210 00000111 122
Q ss_pred --CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE------------------eCCCeEEEEECCC
Q 016187 291 --PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG------------------CVDGKVRVWDSLS 350 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg------------------~~dg~i~iwd~~~ 350 (394)
..++.++.+|.+...|.++.......... ...++..| ..+..+ ..+|.|...|+.+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 25778888999999999887655433211 01122233 233332 2468899999999
Q ss_pred CeEEEEeecc--c------Ccee--EEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 351 GDCVRTFSGH--R------DAIQ--AISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 351 ~~~~~~~~~h--~------~~v~--~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+.+-+.... . .+.. .++ ..+.+|+.++.||.++.+|.++
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCC
Confidence 9987765532 1 1111 122 2457788888999999888654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-05 Score=72.44 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=125.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEecCCC-----eEEEEeCCcc------
Q 016187 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA------ 181 (394)
Q Consensus 114 ~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~------ 181 (394)
+|++.+..++.|+.+|.|.+.+-. -+....++.+... |..+....+..+|++.+.|. .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467889999999999998887632 2333445544444 33332222335777776654 4899998643
Q ss_pred cee--eeecc-----cCcCeEEEEECCCCCeEEEEeCCCcEEEEc--CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 182 AYL--NMFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWN--PKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 182 ~~~--~~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
.++ ..+.+ ...++.+++.+.+-+.+|.|-.+|.|..+. +...+-.+..-.+ -..++|+.+.+..+++.++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCCCceeeEEecCCceeE
Confidence 122 11222 345778999999999999999999998884 2111111111111 1356899999998887633
Q ss_pred EEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 253 SGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
-...-..|.+|.+....+ ...+..|..+++|..+++....+++++ +.-+.+|+.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 344456788999874432 444777888999999998776444443 4468899876543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=69.55 Aligned_cols=254 Identities=14% Similarity=0.102 Sum_probs=138.8
Q ss_pred EEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEE
Q 016187 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLA 166 (394)
Q Consensus 89 v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 166 (394)
+++.+..+.+....+.+|...|+.++|||..+ +|..++.+.+|+|.|+.+......+..+ ..+++++|..+. +++.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 34444444444556788999999999999887 7889999999999999998887777666 789999998865 57888
Q ss_pred ecCCCeEEEEeCCccce-eeeecc--cCcCeEEEEE------CCCCCeEEEEeCCCcEEEEcCCCCc--eEEEEcCCCCc
Q 016187 167 GSEDSTVWMWNADRAAY-LNMFSG--HGSSVTCGDF------TPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYH 235 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~-~~~~~~--h~~~v~~~~~------~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~ 235 (394)
|-..|.|.+||++.... +..+.+ ...+|..++. .+.|.+|+..+. .+..|+..-.. ....++.. .
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele--~ 329 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE--P 329 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC--C
Confidence 99999999999875432 222222 1233333332 223344443332 24566643211 11111110 1
Q ss_pred ccCeEEEEEcCCCCEEEEEeCC-C---cEE----EEECCCCcEEEEec-cCCCC-------EEEEEECCCCCe-EEEEeC
Q 016187 236 TEGLTCLTISADSTLALSGSKD-G---SVH----MVNITTGKVVSSLV-SHTDS-------IECIGFSRSSPW-AATGSM 298 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~d-g---~i~----i~d~~~~~~~~~~~-~h~~~-------i~~v~~~~~~~~-l~s~s~ 298 (394)
.+...++...+-.+.++..... . +++ -.|-..|..+-..+ .+.+. -.++.-.++..+ +..+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 2233344444433333332221 0 011 01112222221111 11000 001111233344 445666
Q ss_pred CCcEEEEeCCCCCcceeccCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEEC
Q 016187 299 DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG--TSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~ 348 (394)
.+.+.+||..+...........+|..+.... .+.||++- .|..++||..
T Consensus 410 tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred cceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 7889999998776655555556666555442 23455543 4667777643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00063 Score=60.05 Aligned_cols=267 Identities=15% Similarity=0.188 Sum_probs=153.0
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEecCCC-C----
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG-G---- 151 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~----------d~~i~vwd~~~~~~~~~~~~~~~-~---- 151 (394)
+++++.|..+++++..+.. +-.-.+..||+|+.+++++. .-.|.+||..+-.....+.-+.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4789999999998877653 22334678999999887652 34689999998877766554432 1
Q ss_pred --EEEEEEcCCCCEEEEe--cCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCC-CCce
Q 016187 152 --VEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK-SGEN 225 (394)
Q Consensus 152 --v~~~~~~~~~~~l~~~--s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~-~~~~ 225 (394)
....+++.++++++.. +--.+|-+.|+..++.+..+.--. |.-.-|. .+.+.+-|.||++.-..+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 1235667777766553 334567788888777776654322 2222232 3468888899998888776 4443
Q ss_pred EEEEcCCCCc--ccCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEeccC----------CCCEEEEEECCCC
Q 016187 226 IHVIRGHPYH--TEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVV--SSLVSH----------TDSIECIGFSRSS 290 (394)
Q Consensus 226 ~~~~~~~~~~--~~~i~-~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~h----------~~~i~~v~~~~~~ 290 (394)
...... .++ .+++. .-.+...+..++--+..|.|+-.|+...... .....- .+.-.-+++++..
T Consensus 171 ~~~~t~-~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 171 AQKSTK-VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEE-ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred eEeecc-ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 322111 111 11221 1123333444444677888888887665422 222110 0122346677655
Q ss_pred CeEEEE-e--C-----CC--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEEECCCCeEEEEee
Q 016187 291 PWAATG-S--M-----DQ--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 291 ~~l~s~-s--~-----dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~ 358 (394)
..|... . . |+ .|-++|+.+.+......-...+.++..+.+.+ +|++.+ .++.+.+||..+|+.+++++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 444332 1 1 11 36677887765544444344566888887765 565544 57999999999999999887
Q ss_pred cc
Q 016187 359 GH 360 (394)
Q Consensus 359 ~h 360 (394)
+-
T Consensus 330 ~l 331 (342)
T PF06433_consen 330 QL 331 (342)
T ss_dssp --
T ss_pred cc
Confidence 53
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.001 Score=58.72 Aligned_cols=256 Identities=19% Similarity=0.180 Sum_probs=152.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC----------CCeEEEEeCCccceeeee--cc-cCc---
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----------DSTVWMWNADRAAYLNMF--SG-HGS--- 192 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~--~~-h~~--- 192 (394)
+.+.|.|..+++.+..+.... .-.+..+|+++.+++++. .-.|.+||..+......+ .. |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 478999999999887765432 334677899997776432 336889999886554432 21 111
Q ss_pred -CeEEEEECCCCCeEEEE--eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CC
Q 016187 193 -SVTCGDFTPDGKTICTG--SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TG 268 (394)
Q Consensus 193 -~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~ 268 (394)
.....+++.++++++.. +-..+|.|-|+..++-+..+.. .++..+--+++ .-+.+-+.||++....+. .|
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-----PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-----PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-----TSEEEEEEEET-TEEEEEETTSCEEEEEETSTS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-----CCEEEEEecCC-CceEEEecCCceEEEEECCCC
Confidence 12235788899887654 4456789999988877666542 23333322222 456778889999999887 56
Q ss_pred cEEEEe----ccCCCCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-----c--------CCCCEEEEEEeCC
Q 016187 269 KVVSSL----VSHTDSI-ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-----D--------HEDGVTCLMWLGT 330 (394)
Q Consensus 269 ~~~~~~----~~h~~~i-~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~--------~~~~v~~~~~~~~ 330 (394)
+...+. ..-.+++ ..-++...+..++-.+..|.|+-.|+......... . ...+..-+++++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 554321 1112222 22233444445555778888887777654322110 0 0122334667766
Q ss_pred CCEEEEEe---C-----CC--eEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-CCCcEEEEeccCC
Q 016187 331 SKYVVTGC---V-----DG--KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 331 ~~~l~sg~---~-----dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iw~~~~~ 393 (394)
.+.|..-- . |+ .|=++|+.+++.+.++.. ..++.+|.++.+.+ +|+..+ .++.+.+||..+-
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 65555432 1 22 366679999999999885 34688999998754 666554 5799999997753
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-05 Score=72.74 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
+.+++++ ++.++-|+.+|.+++++..... +....|+.. .-+|++++||+.||+|.|--+-+.+....+.
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d- 110 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD- 110 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-
Confidence 3444444 5678899999999999876543 333344433 5579999999999999999888777655443
Q ss_pred CCCcccCeEEEEEcCC-----CCEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 016187 232 HPYHTEGLTCLTISAD-----STLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLII 304 (394)
Q Consensus 232 ~~~~~~~i~~~~~~~~-----~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~i 304 (394)
...++.+++++|+ .+.+++|+..| +.++.-+ ..+.-..+....++|.++.|. +.++|=++.+| +++
T Consensus 111 ---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 111 ---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred ---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 2346889999998 56889999888 6665422 111111345567899999887 55788777666 899
Q ss_pred EeCCCCCcceecc--C-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 305 WDLQHSLPRSTCD--H-----EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 305 wd~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
||+.......... + +.-...+.|.++.+. +.| ...+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIG-WGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEe-cCCeEEEEEEe
Confidence 9987653322221 1 112345778776554 443 55678888776
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00043 Score=65.99 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=129.9
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceEEEEec
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG----LVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~----~i~vwd~~~~~~~~~~~~ 147 (394)
+.|++..+..+.-..+.+.+.|.++.+...++.--. ....++++|+|+++++.+.+. ++..-+.........+.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 445433333444455667777888777666554222 335678999999998876432 222222222221111110
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-----cceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCC
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPK 221 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 221 (394)
.. + -++.++|++... .++.|.+.|..+ .+.+..+. -......++++|||++++.+ ..+.+|.|.|+.
T Consensus 279 ~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 00 0 123346776555 367899999887 34444433 44556788999999988655 458999999998
Q ss_pred CCceEE--------EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CcEEEEeccCCCCEEE
Q 016187 222 SGENIH--------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----------GKVVSSLVSHTDSIEC 283 (394)
Q Consensus 222 ~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~h~~~i~~ 283 (394)
+.+... .+.....-..+.....|.++|..+.+-.-|..|-.||+.+ ..++.++..|-.+-.-
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 755311 1111111123345678899999888888999999999876 3455555554433222
Q ss_pred -----EEECCCCCeEEEEeC
Q 016187 284 -----IGFSRSSPWAATGSM 298 (394)
Q Consensus 284 -----v~~~~~~~~l~s~s~ 298 (394)
-.-.|+++||++...
T Consensus 432 ~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 432 HASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eecCCCcCCCCCCEEEEccc
Confidence 223678899888653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0016 Score=58.72 Aligned_cols=272 Identities=17% Similarity=0.171 Sum_probs=128.4
Q ss_pred EEcCCCCEEEEEe-CCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 114 AFSMDGQLLASGG-LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 114 ~~s~~g~~l~t~s-~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+|.+||++|+-++ .|+ .+.+-|+.+++....-.+.........++|+++.++-......++-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5788997665444 444 5677788888766443333222223566788887765556678888999888765555555
Q ss_pred CcCeEEEEEC--CCCCeEEEEeC----------------------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 191 GSSVTCGDFT--PDGKTICTGSD----------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 191 ~~~v~~~~~~--~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
...+-...|. .++..++-.-. ...|.--|+.+|+....+. ....+..+.++|
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~wlgH~~fsP 197 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDWLGHVQFSP 197 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-EEEEEEET
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCccccCcccCC
Confidence 5555444553 35555433211 1234444566665433333 123466788888
Q ss_pred CCC-EEEEEeC------CCcEEEEECCCCcEEEEeccCC--CCEEEEEECCCCCeEEEEe--C---CCcEEEEeCCCCCc
Q 016187 247 DST-LALSGSK------DGSVHMVNITTGKVVSSLVSHT--DSIECIGFSRSSPWAATGS--M---DQKLIIWDLQHSLP 312 (394)
Q Consensus 247 ~~~-~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~--~~i~~v~~~~~~~~l~s~s--~---dg~i~iwd~~~~~~ 312 (394)
... +++-|.+ |..|.+.+.. +.....+..+. ..+.---|.|+|..+.--+ . +..|.-+|+.+...
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 654 4444432 2344444533 33334443332 2344456888888654422 1 22455566665433
Q ss_pred ceeccCCCCEEEEEEeCCCCEEEEEeCCC----------------eEEEEECCCCeEEE--E-------eecccCc-eeE
Q 016187 313 RSTCDHEDGVTCLMWLGTSKYVVTGCVDG----------------KVRVWDSLSGDCVR--T-------FSGHRDA-IQA 366 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----------------~i~iwd~~~~~~~~--~-------~~~h~~~-v~~ 366 (394)
+.. ...........++++++++-=+.|. -|+++++..++... . +.++... =-.
T Consensus 277 ~~~-~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 277 RRL-MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEE-EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred eEE-EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence 322 2222344566678888776433332 56778887766432 1 1222221 246
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEecc
Q 016187 367 ISVSAHQDFLVSVS-LDGTARVFEIA 391 (394)
Q Consensus 367 l~~~~~~~~l~s~s-~dg~i~iw~~~ 391 (394)
..|+||+++|+-.| ..|...||-++
T Consensus 356 p~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CccCCCCCEEEEECCCCCCccEEEEe
Confidence 88999999877544 57888877543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0024 Score=59.19 Aligned_cols=257 Identities=15% Similarity=0.147 Sum_probs=161.1
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s 208 (394)
+.+++..+.+....+.... ....+...+++..+.... ....+...+............-......+++++.++.+ +.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5555555544443333222 344567777775433322 22244444444222111111111334567888888754 45
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~~v~ 285 (394)
...+..|.+.|..+.+........ .....++++|+++.+.++.. ++++.+.|..+++.+.+...-..+ ..++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG----~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVG----LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeec----cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 555689999998777766554421 14557899999977766654 789999999999988875544445 8899
Q ss_pred ECCCCCeEEEE-eCCCcEEEEeCCCCCcce-----eccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEE
Q 016187 286 FSRSSPWAATG-SMDQKLIIWDLQHSLPRS-----TCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCVRT 356 (394)
Q Consensus 286 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~ 356 (394)
++|++..+... ..+++|.+.|........ ...-......+.+.+++.++...... +.+...|..++.....
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 99999966555 478899999976543331 12223334567889999877665443 5899999988877665
Q ss_pred -eecccCceeEEEEccCCCEEEEEe-CCCcEEEEeccCC
Q 016187 357 -FSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 357 -~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~~~~ 393 (394)
+..-...-..+.++|++.++...- ..+.+.+-+...+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 222221345788999999887773 4477777765543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00036 Score=65.17 Aligned_cols=218 Identities=13% Similarity=0.165 Sum_probs=112.1
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
-....++++|+++.++. ..+|...++......... .+......|.+.+ .+|+-...++|+++.--+......+
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence 34667999999998887 567888888744333222 1223456788854 4666666888999632222222222
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.. ...+..+- + |.+|...+.+ .|.+||..+++.+.++... +|..|.|++++.++|-.+.+ .+.|++...
T Consensus 106 ~~----~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 106 KL----PFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred cC----CcccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 21 11122222 2 7777776554 8999999999999998643 48999999999999988755 566665432
Q ss_pred C---------Cc-ceeccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEE
Q 016187 310 S---------LP-RSTCDH--EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 310 ~---------~~-~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 377 (394)
. .. .....| ...|.+.+|..+ -++.|-. ..|+.+ ..|+. ..+..-..++.=+.+.+..+.+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~--~~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS--NHLKYL--VNGET-GIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T--TEEEEE--ETTEE-EEEEE-SS--EEEEEETTTTEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC--CeEEEE--EcCCc-ceEEEcCCceEEEEEEccCCEEE
Confidence 2 00 111112 345667777665 3333322 266653 22322 12222234566667777778888
Q ss_pred EEeCCCcEEEEecc
Q 016187 378 SVSLDGTARVFEIA 391 (394)
Q Consensus 378 s~s~dg~i~iw~~~ 391 (394)
....|+.|..+.+.
T Consensus 249 ~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 LIDRDGNVISYELD 262 (443)
T ss_dssp EE-TT--EEEEE--
T ss_pred EEECCCCEEEEEEC
Confidence 88888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-05 Score=71.74 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=63.0
Q ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
......+.|++++|+...|+.|+.||+|.+||..++... +....-..+.++|+|+|.+++.|+..|.+.+||++
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 356778999999999999999999999999998766433 33334456889999999999999999999999976
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.004 Score=60.10 Aligned_cols=278 Identities=16% Similarity=0.212 Sum_probs=150.7
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcc-cCEE----------EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHK-DSVS----------SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~-~~V~----------~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.++-.|..+++.+-.+.-.. ..+. .+++ .+..++.++.|+.|.-.|..+|+.+-.....
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~ 149 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNG 149 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence 3345566777778888887665443111 1111 1222 2346777888999999999999987654321
Q ss_pred CCC-EEEEEEcC---CCCEEEEec------CCCeEEEEeCCccceeeeeccc----------------------------
Q 016187 149 GGG-VEWVSWHP---RGHIVLAGS------EDSTVWMWNADRAAYLNMFSGH---------------------------- 190 (394)
Q Consensus 149 ~~~-v~~~~~~~---~~~~l~~~s------~d~~i~iw~~~~~~~~~~~~~h---------------------------- 190 (394)
... -..+.-.| ++ .++.++ .++.|..+|.++++.+-.+..-
T Consensus 150 ~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 100 00011112 33 344443 2678888888877654322110
Q ss_pred ---CcCe-EEEEECCCCCeEEEEeCC-----C-----------cEEEEcCCCCceEEEEcCCC--Ccc----cCeEEEEE
Q 016187 191 ---GSSV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHP--YHT----EGLTCLTI 244 (394)
Q Consensus 191 ---~~~v-~~~~~~~~~~~l~s~~~d-----g-----------~i~vwd~~~~~~~~~~~~~~--~~~----~~i~~~~~ 244 (394)
...+ ...++.|...++..+... + +|.--|+++|+..-.++..+ ... ....-+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 0111 123566655666555422 2 56667788887654443211 110 12233344
Q ss_pred cCCCC---EEEEEeCCCcEEEEECCCCcEEEEe--cc----------CC-CCE---------------------------
Q 016187 245 SADST---LALSGSKDGSVHMVNITTGKVVSSL--VS----------HT-DSI--------------------------- 281 (394)
Q Consensus 245 ~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~--~~----------h~-~~i--------------------------- 281 (394)
..+|+ .++.+..+|.+.++|..+|+.+... .. .. .++
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~ 388 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKN 388 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCC
Confidence 45665 7889999999999999999876221 00 00 000
Q ss_pred -EEEEECCCCCeEEEEeCC---------------------------------CcEEEEeCCCCCcceeccCCCCEEEEEE
Q 016187 282 -ECIGFSRSSPWAATGSMD---------------------------------QKLIIWDLQHSLPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 282 -~~v~~~~~~~~l~s~s~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~ 327 (394)
..++++|...++.....+ |.|.-+|+.+...........+...-..
T Consensus 389 W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l 468 (527)
T TIGR03075 389 WQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVL 468 (527)
T ss_pred CCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcce
Confidence 014566655554433322 3455566655544433222211111111
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
.-.+..++.++.+|.++.+|.+||+.+-++.-.
T Consensus 469 ~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 469 ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 124457778888999999999999999887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-05 Score=75.03 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
+.+++|||. ..+||.|=.-+.+-+|..++.+.-.....|+.+|..+.|||+|..|+|+..-|.|.+|...
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 467999994 6788999889999999998888777777899999999999999999999999999999764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0022 Score=56.58 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=128.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee---------
Q 016187 117 MDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--------- 186 (394)
Q Consensus 117 ~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~--------- 186 (394)
..++.|+.|..+| |.+++... .+...... ..+|..+...|+-+.+++-+ |+.++++++........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578899999888 89998832 33332222 22399999988877666654 49999999865332221
Q ss_pred -----ecccCcCeEEEE--ECCCCCeEEEEeCCCcEEEEcCCCC-----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEE
Q 016187 187 -----FSGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 187 -----~~~h~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g 254 (394)
.......+...+ -.+.+...+.....++|.+|..... +..+.+. ....+..+.|. +..++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEEEEE
Confidence 001122233323 1123444444455568888877553 2233332 23557778877 5566666
Q ss_pred eCCCcEEEEECCCCcEEEEecc------------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCC
Q 016187 255 SKDGSVHMVNITTGKVVSSLVS------------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDG 321 (394)
Q Consensus 255 ~~dg~i~i~d~~~~~~~~~~~~------------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~ 321 (394)
..+ ...+.|+.++....-+.. ...++..+... ++.+|++- +..-.+.|......+ ....-...
T Consensus 155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCc
Confidence 644 478889887654322211 11234444444 34555542 333344454433222 22222334
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 361 (394)
+..+++. ..||++.+. +.|.||++.++++++.+...+
T Consensus 231 p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 4555553 358887666 459999999999999888543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.002 Score=55.29 Aligned_cols=200 Identities=17% Similarity=0.232 Sum_probs=115.0
Q ss_pred eecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.+.+-.+.+..++|.|+.. ++++....+.|...+. +|+.+..+... .+....+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5666667799999999866 5556666777877886 57877766543 3678889998888777776678999988873
Q ss_pred ccc------eeeeec-----ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---CceEEEEc-----CCCCcccCeE
Q 016187 180 RAA------YLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIR-----GHPYHTEGLT 240 (394)
Q Consensus 180 ~~~------~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~-----~~~~~~~~i~ 240 (394)
... ....+. .+...+-.++|.|.++.|+.+-...-.+++.+.. ...+.... ........+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 211 111111 2344578899999888888777776677776543 22222111 0112234577
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCC---------CCEEEEEECCCCCeEEEEeCCCcEEE
Q 016187 241 CLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSSPWAATGSMDQKLII 304 (394)
Q Consensus 241 ~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---------~~i~~v~~~~~~~~l~s~s~dg~i~i 304 (394)
.+.++|. +.+++.+..+..|..+| .+|+++..+.-.. .....|+|.++|.+.++ +.-+....
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 8888885 56777788889999999 6777766543222 35789999999865544 44544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0037 Score=58.37 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=127.6
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-------cCCCCEEEEEEcCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPR 160 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~ 160 (394)
.|++|+. .|+.+..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+....+. -....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 5888986 45556655444488999999985 455567789999999986 33311111 01111222233335
Q ss_pred CCEEEEecCCCeEEEEeCCccc-eeeee---cccCc------CeEE-EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 161 GHIVLAGSEDSTVWMWNADRAA-YLNMF---SGHGS------SVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 161 ~~~l~~~s~d~~i~iw~~~~~~-~~~~~---~~h~~------~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
|-.+++ .++.+++.+--... ..+.+ .+... .... ..++.+....+....++.+.+-+-...+. +
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 544443 34445544322211 11111 11000 0000 12333333444444444444333211111 1
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
. ...++..+++||++++++.-..+|.+.+.+..-.+.+..+.-. ......+.|..+...++.- ...+.+....
T Consensus 214 ~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 214 D----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred c----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence 1 1246899999999999999999999999887666665555433 3455677777654333322 3344444322
Q ss_pred CCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 309 HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.. .+.|.-++..++..-.|| |||......+.+++...
T Consensus 288 ~~-------------~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 288 GD-------------SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred CC-------------ceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 11 123333344445555566 88887666666666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0017 Score=54.40 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=66.2
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
+++-|...+.+++-+.++|+....+..-..-=......+++..+..|+.|++....|..+...+.+.+...+-..+-+..
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~ 144 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA 144 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceec
Confidence 45667778888888888887665544321111123457889999999999999999999888777766555444444556
Q ss_pred CCCCEEEEecCCCeEEEEeCC
Q 016187 159 PRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~ 179 (394)
|-...|..+...|.+.--+.+
T Consensus 145 ~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 145 PGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred CCCceEEEEeccceEEEEccC
Confidence 633445555555555444433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00078 Score=57.75 Aligned_cols=194 Identities=13% Similarity=0.177 Sum_probs=111.2
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
.+.+-.+++..|+|.|+.+.++|.....+.+.-.+. .|+.++.+.-. .+-.-.|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 445666789999999988889999999999888886 47777665322 2457788888888777766668899888873
Q ss_pred CC--ce----EEEEe-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---ccee--ee------ecccCcCeE
Q 016187 138 SG--NL----KCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYL--NM------FSGHGSSVT 195 (394)
Q Consensus 138 ~~--~~----~~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---~~~~--~~------~~~h~~~v~ 195 (394)
.. .. ...+. .....+..++|.|.++.|+.+-...-..+|.+.. ...+ .. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 22 11 11121 2345689999999988777776666556665542 1111 11 112334578
Q ss_pred EEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC------cccCeEEEEEcCCCCEEEEE
Q 016187 196 CGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 196 ~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~g 254 (394)
+++++|. +++++....+..|..+| .+|+.+..+..... .....-.+++.++|++++++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 8899985 56777778888899999 56765554432211 11235567888988776665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0051 Score=57.03 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceee
Q 016187 110 VSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLN 185 (394)
Q Consensus 110 V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~ 185 (394)
-..+++++.+.. +++...+..|.+.|..+.+......-.. ....+++.|+++.+..+.. ++++.+.|..+.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 356788888874 4555556899999987777666554322 4567899999976655544 6889999988887777
Q ss_pred eecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEE-EEcCCCCcccCeEEEEEcCCCCEEEEEeCC---CcE
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSV 260 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d---g~i 260 (394)
....-..+ ..+++.|+|+.++.+. .++.|.+.|........ ..............+.++|++.++.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 64433334 7889999999766554 78899999976654432 100000112234567899999966655433 599
Q ss_pred EEEECCCCcEEEEeccCCC-CEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc
Q 016187 261 HMVNITTGKVVSSLVSHTD-SIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP 312 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~-~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~ 312 (394)
...|..++........-.. ....+.++|++.++.+... .+.+.+-|......
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 9999998877665221112 4566889999998877744 47888888766443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-06 Score=81.57 Aligned_cols=195 Identities=17% Similarity=0.248 Sum_probs=125.9
Q ss_pred CEEEEEEcCCC--CEEEEecCCCeEEEEeCCccce--eeeecccCcCeEEEEECC-CCCeEEEEe----CCCcEEEEcCC
Q 016187 151 GVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGS----DDATLRVWNPK 221 (394)
Q Consensus 151 ~v~~~~~~~~~--~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~----~dg~i~vwd~~ 221 (394)
.+.++++.-+. .+++.|..+|.|-+-.++...- -....+|..++++++|++ |.+.||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 34555554433 4778899999999988764321 234567888999999998 566777764 36789999987
Q ss_pred CCce--EE--EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC-CCCeEEEE
Q 016187 222 SGEN--IH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR-SSPWAATG 296 (394)
Q Consensus 222 ~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~ 296 (394)
++-. .. .+.. ....+..++++-.+.+++++|.....++++|++..... .....+..+..+.++| .+.|+++-
T Consensus 138 s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc
Confidence 7621 11 1111 12345667888888999999999999999999843211 1111334555677788 66677766
Q ss_pred eCCCcEEEEeC-CCC-CcceeccC-----CCCEEEEEEeCCCC-EEEEEeC-CCeEEEEECC
Q 016187 297 SMDQKLIIWDL-QHS-LPRSTCDH-----EDGVTCLMWLGTSK-YVVTGCV-DGKVRVWDSL 349 (394)
Q Consensus 297 s~dg~i~iwd~-~~~-~~~~~~~~-----~~~v~~~~~~~~~~-~l~sg~~-dg~i~iwd~~ 349 (394)
. ||.|.+||. ++. .+.....| ...+..++|.|... .+++.+. .++|+++++.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 999999994 221 11111122 23488999998653 3444443 4678999864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0018 Score=59.79 Aligned_cols=227 Identities=14% Similarity=0.182 Sum_probs=124.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-------------------------------------------eeEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------------------WASE 102 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-------------------------------------------~~~~ 102 (394)
.|..+.|++. ..-||.|-..|.|.||.....+ ....
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5788899885 4456677788888887642110 0011
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--ec------CCCCEEEEEEcC-----CC---CEEEE
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EG------PGGGVEWVSWHP-----RG---HIVLA 166 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~---~~l~~ 166 (394)
++...++|++++.|.= .++|.|..+|.+.|.|++....+..- .. ....++++.|.. ++ -.+++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2334689999999854 48999999999999999877766542 12 234577777763 22 37889
Q ss_pred ecCCCeEEEEeCC--c-ccee----eeecccCcCeEEEE-ECCC-C-------------------CeEEEEeCCCcEEEE
Q 016187 167 GSEDSTVWMWNAD--R-AAYL----NMFSGHGSSVTCGD-FTPD-G-------------------KTICTGSDDATLRVW 218 (394)
Q Consensus 167 ~s~d~~i~iw~~~--~-~~~~----~~~~~h~~~v~~~~-~~~~-~-------------------~~l~s~~~dg~i~vw 218 (394)
|...|.+.+|.+. . +... .....+.+++..+. |+.+ | +-++....+..+|++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999763 1 2221 11123445554443 3221 1 124444557889999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEE-----cCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC----CCEEEEEECCC
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTI-----SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT----DSIECIGFSRS 289 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~----~~i~~v~~~~~ 289 (394)
.+.+.+..++....+.. ...+.+ ...+..|++-..+|.++++.+..-+.+..+.... ..+....++++
T Consensus 241 ~~~~~k~~~K~~~~~~~---~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFL---CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp -TT---EEEEE-SS-EE---EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred eCCCCcccceeeccccc---cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 98887766554422111 122222 2356677888899999999999988887765432 12334556777
Q ss_pred CCeEEEEe
Q 016187 290 SPWAATGS 297 (394)
Q Consensus 290 ~~~l~s~s 297 (394)
|..++-.+
T Consensus 318 Gdi~~~~g 325 (395)
T PF08596_consen 318 GDIFYWTG 325 (395)
T ss_dssp S-EEEE-S
T ss_pred CCEEEEeC
Confidence 77665544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00086 Score=62.71 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..-....+.++|+|++++.+ .||.-.|+.....+.... +.-....|.+.+. +++-...++|.++.--+....+
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 34457899999999999884 577888887544443322 2233478888555 5665668889996332222212
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
.+... ..+..+ |. |..|+..+.+ .|.+||..+++.+..+.. .+|..+.|++++.+++..+.+ .+.+++.
T Consensus 104 ~i~~~-~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 104 SIKLP-FSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp ----S-S-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEcCC-cccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 22211 122222 22 7777776654 899999999988887753 247899999999999888755 6777664
Q ss_pred CCC-----------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEE
Q 016187 266 TTG-----------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 266 ~~~-----------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 334 (394)
... ..+..+..-...|.+..|..+ -++.|. .. +++.+ -.+.......-..++.-+.+.+..+.+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkYl--~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SN-HLKYL--VNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CC-eEEEE--EcCCcceEEEcCCceEEEEEEccCCEE
Confidence 332 022222222456777777655 233332 22 44432 111111111112334444455555555
Q ss_pred EEEeCCCeEEEEEC
Q 016187 335 VTGCVDGKVRVWDS 348 (394)
Q Consensus 335 ~sg~~dg~i~iwd~ 348 (394)
.....++.|..+.+
T Consensus 248 y~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 248 YLIDRDGNVISYEL 261 (443)
T ss_dssp EEE-TT--EEEEE-
T ss_pred EEEECCCCEEEEEE
Confidence 55555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-06 Score=79.52 Aligned_cols=256 Identities=12% Similarity=0.199 Sum_probs=151.1
Q ss_pred ccCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCce--EEEEecCCCCEEEEEEcCCC-CEEEEec----CCCeEEEEe
Q 016187 107 KDSVSSLAFSMDG--QLLASGGLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRG-HIVLAGS----EDSTVWMWN 177 (394)
Q Consensus 107 ~~~V~~v~~s~~g--~~l~t~s~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~s----~d~~i~iw~ 177 (394)
...+.|++++.+. ..++.|..+|.|-+-.+....- .....++..++++++|++-. +.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457777776544 4788999999999887654321 22345677889999999854 4555553 356899999
Q ss_pred CCcc--cee--eeecc-cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEE
Q 016187 178 ADRA--AYL--NMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLA 251 (394)
Q Consensus 178 ~~~~--~~~--~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 251 (394)
+.++ .+. ..+.+ ......++.|..+.+++.+|...+.+.++|++.... ......+..+..+.++| ...++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCCCce
Confidence 8765 111 12222 233445677888889999999999999999873211 00111233455567788 55565
Q ss_pred EEEeCCCcEEEEE-CCCC-cEEEEeccCC----CCEEEEEECCCCC-eEEEEeC-CCcEEEEeCCCCCc-----------
Q 016187 252 LSGSKDGSVHMVN-ITTG-KVVSSLVSHT----DSIECIGFSRSSP-WAATGSM-DQKLIIWDLQHSLP----------- 312 (394)
Q Consensus 252 ~~g~~dg~i~i~d-~~~~-~~~~~~~~h~----~~i~~v~~~~~~~-~l~s~s~-dg~i~iwd~~~~~~----------- 312 (394)
+ ...||.|-+|| .++- .++..+.... ..+..++|+|... .+++... .++|+++|+...-.
T Consensus 212 c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~ 290 (783)
T KOG1008|consen 212 C-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVN 290 (783)
T ss_pred e-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceee
Confidence 5 44599999999 3332 2222222222 2488999999754 4555554 57899999853100
Q ss_pred -ce--eccCC---CCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 313 -RS--TCDHE---DGVTCLMWLGTS--KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 313 -~~--~~~~~---~~v~~~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
.. ...|. ..|.+..|++.. ....++...-.++-+++.. ..+..|.++.+.+-|+-
T Consensus 291 ~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 291 YESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred ecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhh
Confidence 00 11222 457777777654 2333444444444443321 12334444666666653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=73.39 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=62.7
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
....|.+++++|+...|+.|..||+|.+||...+-.... ...-..+.++|||+|.++++|+..|.+.+||..-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 667899999999999999999999999999876643322 233456789999999999999999999999986443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00063 Score=63.38 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=104.3
Q ss_pred cCCcEEEEEEcCCCCcEEEE---ecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEE-EEeCCCcEE--EE
Q 016187 63 HSDEVYSVACSPTDATLVAT---GGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQ--IW 134 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~las---g~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~--vw 134 (394)
-...+..-+|+|.+..+... .+....++++++++++... .+.++. ..-+|||||++|+ +...|+... +.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEE
Confidence 34455666788865443222 1222568899988876444 344444 3568999998765 555666554 55
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec-CCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
|+.++... .+....+--..-.|+|+|+.++-.+ ..| .|.+++.+.+...+. ......-..-.++|+|++++..+.
T Consensus 268 dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 268 DLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcCccCCCCCCEEEEEec
Confidence 76666533 2443333333567999999775554 444 456666666554322 222222225578999999987764
Q ss_pred C-Cc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 212 D-AT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 212 d-g~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
. |. |.+.|+.++.....+.... ....-++.++++.++..+
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~lt~~~----~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRILTSTY----LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCCceeeEEeccCCCCcEEEccccc----cCCCCCcCCCCceEEEec
Confidence 3 44 6666666655433333211 112234566776665443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00099 Score=63.18 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=90.3
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY- 183 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~- 183 (394)
|...|.--+++..+++++.|+.-|.+.+|+-..++... +..+..+.+.....++...++++|+..|.|.++.++....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666778889999999999999999977665432 2233455566677889999999999999999998765321
Q ss_pred ----eeee-cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 184 ----LNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 184 ----~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
+..+ +.|...|+++.|++++..|++|...|+|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 23778999999999999999999999998887765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0069 Score=53.87 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=127.8
Q ss_pred EEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---
Q 016187 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--- 147 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~--- 147 (394)
.|.|..+.++.+--..+.+.-|+..+++.. .+. +.+.+.++..-..+..|+++. .-+.++++.++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 356666667777667788888887665432 222 223334444444444555553 3467777766655222211
Q ss_pred --CCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-C
Q 016187 148 --PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A 213 (394)
Q Consensus 148 --~~~~v~~~~~~~~~~~l~~~s~-----------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g 213 (394)
.....+.+...|+|.+.++... -|.++.++. .+..++.+..+-...+.++||||++.|..+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1134556778888887665444 123444443 455556666666666789999999888776553 6
Q ss_pred cEEEEcCCC--C----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 214 TLRVWNPKS--G----ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 214 ~i~vwd~~~--~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
.|.-|++.. + +...... .......-.+++..+|.+.+++..+| .|..|+.. ++++..+......+++++|
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 677776542 1 1111111 11223344567778888886555554 89999988 8888888777677777777
Q ss_pred C-CCCCeE
Q 016187 287 S-RSSPWA 293 (394)
Q Consensus 287 ~-~~~~~l 293 (394)
- ++.+.|
T Consensus 263 gG~~~~~L 270 (307)
T COG3386 263 GGPDLNTL 270 (307)
T ss_pred eCCCcCEE
Confidence 5 333433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=59.56 Aligned_cols=235 Identities=15% Similarity=0.174 Sum_probs=122.2
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---C---c
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---G---E 224 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~---~ 224 (394)
.|+.+.|.+...-|++|...|.+.+|.....+... .....+-....+.+- ...++.-.+-|+.. . +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 47889999999999999999999999875543221 000000001111110 00111112223221 1 1
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--cc------CCCCEEEEEEC-----CCC-
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VS------HTDSIECIGFS-----RSS- 290 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~------h~~~i~~v~~~-----~~~- 290 (394)
....+.......++|++++.| +=.++++|..+|++.|.|++...++... .. ....++++.|+ .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 111111111235679999986 6679999999999999999888877652 22 23457777775 222
Q ss_pred --CeEEEEeCCCcEEEEeCCC-CCcc-------eeccCCCCEEEEE-EeCCC--------------------CEEEEEeC
Q 016187 291 --PWAATGSMDQKLIIWDLQH-SLPR-------STCDHEDGVTCLM-WLGTS--------------------KYVVTGCV 339 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~-~~~~-------~~~~~~~~v~~~~-~~~~~--------------------~~l~sg~~ 339 (394)
..|++|...|.+.+|.+.. ...+ ....+...+..+. +..+. +-++..+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 5688999999999998742 1111 1113445554443 22221 12344455
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEE-----ccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISV-----SAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
+..++++...+.+..+......-....+.+ ...+..|++-..+|.|++|.+..+|
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 788999998888776544433223334444 2356788999999999999998765
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=65.66 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=93.6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEE-
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVS-SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTC- 324 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~- 324 (394)
..+..-+.||.|.-++++..+... +...|... .....-+.-++.|+.+|.|.+|+.... .....+.-...+.+
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 345566778888877776543211 11112222 122233556899999999999987521 11111111222322
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEE--eCCCcEEEEeccCC
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSV--SLDGTARVFEIADF 393 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~dg~i~iw~~~~~ 393 (394)
+.-..++.+..+++.+|.|+.|++.-.+.+.....|+ .++..+..+..++.+++. |.|..++.|+++.+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2223445688899999999999999999888878888 777777777788888888 99999999998765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.012 Score=53.22 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=125.2
Q ss_pred EEcCCCCcEEEEecCCCeEEEE--EcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 71 ACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+|.+++.++|.++..|+.-.+| |+.+++..+.-.+-.+......++|+.+.++=......|+--|+.+.+....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 3556666777766666665554 67777765544332233335667898888765656678999999998877666666
Q ss_pred CCCEEEEEEc--CCCCEEEEec---C-------------------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCC
Q 016187 149 GGGVEWVSWH--PRGHIVLAGS---E-------------------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 149 ~~~v~~~~~~--~~~~~l~~~s---~-------------------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
.+-+-...|. .++..++-.- . ...|.-.++.+++....+ .....+..+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence 6655555664 3344433211 0 112233344444432222 2334556678999544
Q ss_pred eE-EEEeC---CC-cEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCcEEEE
Q 016187 205 TI-CTGSD---DA-TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALS-----GSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 205 ~l-~s~~~---dg-~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-----g~~dg~i~i~d~~~~~~~~~ 273 (394)
.+ +-|-. +. .-|||-+.+ +.....+..+. ....+..=-|.|+|..+.- ++.+..|.-+|+.+++...-
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 44 44332 22 136675443 33344444332 2334555578899876543 22344567778888754322
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCC----------------cEEEEeCCCCCcceeccCCC-----------CEEEEE
Q 016187 274 LVSHTDSIECIGFSRSSPWAATGSMDQ----------------KLIIWDLQHSLPRSTCDHED-----------GVTCLM 326 (394)
Q Consensus 274 ~~~h~~~i~~v~~~~~~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~-----------~v~~~~ 326 (394)
. ...+..-.-.++++.+++.=+.|. -|.++++........+.|.. .=....
T Consensus 280 ~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 M--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp E--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred E--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 1 112334455678888877544442 45567776544333333321 123568
Q ss_pred EeCCCCEEEE-EeCCCeEEEE
Q 016187 327 WLGTSKYVVT-GCVDGKVRVW 346 (394)
Q Consensus 327 ~~~~~~~l~s-g~~dg~i~iw 346 (394)
|+||+++|+- ....|...||
T Consensus 358 FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCEEEEECCCCCCccEE
Confidence 9999987664 4456766665
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.018 Score=53.78 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=99.4
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc------eeeeecccCcCeEEEEECCCC
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------YLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~ 203 (394)
.|+||+. .|+.+.++.-..+.+-.+.|..+.. |++...||.+++||+.... .+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888875 4666666655558899999998654 5566799999999986333 011111111112222333344
Q ss_pred CeEEEEeCCCcEEEEc-CCCCceEEEEcCCCCcc------cCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 204 KTICTGSDDATLRVWN-PKSGENIHVIRGHPYHT------EGLTC-LTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~~~~------~~i~~-~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
-.+++ .++.+.+.. .........+...+... ..... ..++.+....+....++.+.+.+-...+. +
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 33333 334443332 21110111111100000 00000 12333444444444455555444322111 1
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCC
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~ 332 (394)
...+++..+++||+++++|.-..+|.+.+.+..-.... ...........+.|..+..
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 12468999999999999999999999988865433222 1222234456677766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.013 Score=52.15 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=125.7
Q ss_pred EEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC--C
Q 016187 156 SWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG--H 232 (394)
Q Consensus 156 ~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~ 232 (394)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +...+.++..-..+..|+++. .-+.++++.++..+..+.. .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 4566655 4455556778888888755422 222 222233333333344444443 3356666655544222211 1
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CC
Q 016187 233 PYHTEGLTCLTISADSTLALSGSK-----------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQ 300 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg 300 (394)
.......+-+.+.|+|.+.++... -|.|+.++. .+..+..+..+-..-+.++|||+++.|..+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 111234556778899988776544 134555554 45666656555566788999999987776655 47
Q ss_pred cEEEEeCCC--C---Ccc--eecc-CCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 301 KLIIWDLQH--S---LPR--STCD-HEDGVTCLMWLGTSKYVVTGCVDG-KVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 301 ~i~iwd~~~--~---~~~--~~~~-~~~~v~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
.|.-|++.. . ..+ ..+. .....-.++...++.+.+++-.+| .|.+|+.. |+++..+.-....+++++|.-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 777777652 1 001 1111 122333455566777775555554 89999887 999999887767788888864
Q ss_pred -CCCEEEE
Q 016187 372 -HQDFLVS 378 (394)
Q Consensus 372 -~~~~l~s 378 (394)
+.+.|..
T Consensus 265 ~~~~~L~i 272 (307)
T COG3386 265 PDLNTLYI 272 (307)
T ss_pred CCcCEEEE
Confidence 4454443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.4e-05 Score=44.08 Aligned_cols=38 Identities=42% Similarity=0.798 Sum_probs=34.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
+....+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45567778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.9e-05 Score=43.87 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=35.1
Q ss_pred CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++..+..|...|+++.|.++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0047 Score=57.65 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=106.3
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCe--
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDST-- 172 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s---~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~-- 172 (394)
...+.--...+..-+|+|+++.++-.+ .. ..+.++++.+++....+. ..+.-..-+|+|+|+.| ++...|+.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 344444456677889999998765443 22 358899999887654443 22233446899999865 45556665
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe-CCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
|++.|+..+...+ +..-.+.-..=.|+|+|+.++-.+ ..|. |.+.++..++. ..+... ...-..-.++|+|+
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~---~~~~~~p~~SpdG~ 338 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS---GGGNSNPVWSPDGD 338 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---CCCCcCccCCCCCC
Confidence 5555666555333 221112112446899999886544 4555 45556554443 222211 11112557899999
Q ss_pred EEEEEeCC-Cc--EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 250 LALSGSKD-GS--VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 250 ~l~~g~~d-g~--i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
+++..+.. |. |.+.++.++..+..+ .+......-.+.+++..+...
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEe
Confidence 88876643 43 556666555432222 222333334566666655433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0006 Score=67.36 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=93.7
Q ss_pred CCEEEEE-eCCCcEEEEECCCCcEEEEeccCCCC-EEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCc--ce----
Q 016187 248 STLALSG-SKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSR-----SSPWAATGSMDQKLIIWDLQHSLP--RS---- 314 (394)
Q Consensus 248 ~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~v~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~--~~---- 314 (394)
.++++.. .....|+-.|+..|+++.....|... |..++-.. +......|-.+..+..||++-... ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 45678999999999999998877654 55543221 122345677788899999875321 11
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
........+|++-..+ .+||.|+.+|.||+||- .|+. ...|.+-+.+|.+|..+.||++|+..+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 1122334667765544 58999999999999994 3433 3356788899999999999999886664 4455554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.039 Score=51.94 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=122.5
Q ss_pred CEEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecC-----------CC
Q 016187 109 SVSSLAFSMDGQLLASG-GLDG----LVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSE-----------DS 171 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~-s~d~----~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~-----------d~ 171 (394)
.+....+||+|++||-+ +..| .|++.|+.+|+.+... .... ...+.|.++++.++.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44568899999988744 4444 5999999999776432 2221 223899999886655432 23
Q ss_pred eEEEEeCCcccee--eeecccCcC--eEEEEECCCCCeEEEEeC-C---CcEEEEcCCCC----ceEEEEcCCCCcccCe
Q 016187 172 TVWMWNADRAAYL--NMFSGHGSS--VTCGDFTPDGKTICTGSD-D---ATLRVWNPKSG----ENIHVIRGHPYHTEGL 239 (394)
Q Consensus 172 ~i~iw~~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~l~s~~~-d---g~i~vwd~~~~----~~~~~~~~~~~~~~~i 239 (394)
.|+.|.+.+.... ..+...... ...+..++++++|+..+. . ..+.+.++..+ .....+.. ....+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~ 279 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---REDGV 279 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSSS-
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCCce
Confidence 4778887765432 333333322 567888999998764332 2 34777787764 22333322 11223
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCc---EEEEeccCCCC--EEEEEECCCCCeEE-EEeCCC--cEEEEeCC
Q 016187 240 TCLTISADSTLALSGS---KDGSVHMVNITTGK---VVSSLVSHTDS--IECIGFSRSSPWAA-TGSMDQ--KLIIWDLQ 308 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~---~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~v~~~~~~~~l~-s~s~dg--~i~iwd~~ 308 (394)
....-...+.+++... ..+.|...++.... ....+..+... +..+.. .+.+|+ ..-.++ .|+++++.
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 2222222444444332 34567777777654 23345555553 444444 344444 333343 57888887
Q ss_pred -CCCcceecc-CCCCEEEEEEeCCCCEEE-EE-eC--CCeEEEEECCCCeEE
Q 016187 309 -HSLPRSTCD-HEDGVTCLMWLGTSKYVV-TG-CV--DGKVRVWDSLSGDCV 354 (394)
Q Consensus 309 -~~~~~~~~~-~~~~v~~~~~~~~~~~l~-sg-~~--dg~i~iwd~~~~~~~ 354 (394)
......... -...|..+...++...+. +. |. =++++.||+.+++..
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 332222211 122234443334443322 22 21 246777888777653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.015 Score=52.58 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=116.1
Q ss_pred eEEEEEcCCCeeeEee--cC--cccCEEEEEEcCC----CCEEEEEeC----------CCcEEEEeCCCC-----ceEEE
Q 016187 88 KGFFWRINQGDWASEI--QG--HKDSVSSLAFSMD----GQLLASGGL----------DGLVQIWDPSSG-----NLKCT 144 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~--~~--h~~~V~~v~~s~~----g~~l~t~s~----------d~~i~vwd~~~~-----~~~~~ 144 (394)
.+++.|..+.+.+..+ .. +...+..+.|..+ -.+|+.|.. .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4566666665554433 21 1122333444433 457776653 288999998874 22211
Q ss_pred -EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecc-cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 145 -LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 145 -~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
-....++|++++-. .+. |+++ ..+.+.+|++...+ ......- ....++++... +++++.|..-..+.++...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 12345788888766 344 3333 34889999987766 4333222 22345555443 6699999988888887443
Q ss_pred C-CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C--cEEEEec-cCCCCEEEE---EEC
Q 016187 222 S-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-------G--KVVSSLV-SHTDSIECI---GFS 287 (394)
Q Consensus 222 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-------~--~~~~~~~-~h~~~i~~v---~~~ 287 (394)
. +..+..+... .....++++.+-+++..++++..+|.+.++.... + +...... ...+.|+++ .+.
T Consensus 158 ~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 3 3334444321 2234577777775667999999999999987652 2 2222221 234567777 444
Q ss_pred CC--C------CeEEEEeCCCcEEE
Q 016187 288 RS--S------PWAATGSMDQKLII 304 (394)
Q Consensus 288 ~~--~------~~l~s~s~dg~i~i 304 (394)
|. . +.++.++.+|.|-.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 51 1 24777888888873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=62.99 Aligned_cols=188 Identities=12% Similarity=0.126 Sum_probs=96.4
Q ss_pred CCcEEEEecCC------CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceE
Q 016187 76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (394)
Q Consensus 76 ~~~~lasg~~d------~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~ 142 (394)
++.+.+.||.+ ..+..||..+..+... +......... ..-+|...+.||.++ ++..||+.+..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~--~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL--AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE--EEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 34566667753 3466788777766432 2111111112 223577778888764 4788998877654
Q ss_pred EEEe--cCCCCEEEEEEcCCCCEEEEecCCC-----------------------eEEEEeCCccceeeeecccCcCeEEE
Q 016187 143 CTLE--GPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 143 ~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~-----------------------~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
..-. .+......+ .-++++.+.|+.++ .+..||..+.+-...-.-........
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 3211 111111112 23577777777542 46778876653221111001111111
Q ss_pred EECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc
Q 016187 198 DFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGK 269 (394)
Q Consensus 198 ~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~ 269 (394)
...-+++..+.|+.+ ..+..||+.+......+...+........+. -++++.++|+.++ ++..||..+.+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 112246666677654 2467899987222333332222222222222 3688889999888 67777777654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0016 Score=64.54 Aligned_cols=139 Identities=17% Similarity=0.342 Sum_probs=95.4
Q ss_pred EEecCCCeEEEEeCCccceeeeecccCcC-eEEEEECCC-------CCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCC-
Q 016187 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPD-------GKTICTGSDDATLRVWNPKSGE-NIHVIRGHPY- 234 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~- 234 (394)
........++-.|++.++.+..+..|... |. .|.|+ ....+.|-.+..+..||++-.. .+..-..+.+
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 33345678999999999999999888654 44 44443 3346778888999999998643 2211112222
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
.....+|++.+.+| ++|+|+.+|.||+||-...+....+.+-..+|..|..+.+|+|++..+ +..|.|+++
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 23346777776655 578899999999999533333333556678999999999999987554 556777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00059 Score=64.65 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce---
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--- 225 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--- 225 (394)
..+..-++...+++++.|+.-|.+++|+-..++....-. +....+....++++..++|.|+..|.|.++-+.....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 345555677788999999999999999987765433322 2334445567888999999999999999998765432
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
...-..+..|...|+++.|++++..+++|...|+|..-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 222233444677899999999999999999999999888776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00028 Score=65.94 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=74.6
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~-~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
.-.|.-+.|+|. ..++|++..+|.+.+..++ -+-+.+++-|...|+ +++|.|||+.||.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 346788899994 6799999999999888887 455667776777777 9999999999999999999999999988776
Q ss_pred EEE-ecCCCCEEEEEEcC
Q 016187 143 CTL-EGPGGGVEWVSWHP 159 (394)
Q Consensus 143 ~~~-~~~~~~v~~~~~~~ 159 (394)
... .....+|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 542 22344566666653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.029 Score=51.54 Aligned_cols=262 Identities=14% Similarity=0.197 Sum_probs=134.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee
Q 016187 116 SMDGQLLASGG---------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 116 s~~g~~l~t~s---------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 186 (394)
|||+++++... ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888776632 23578899999876543322 256788899999999887764 58899998766543322
Q ss_pred e-cc-------c---------CcCeEEEEECCCCCeEEEEeCC-CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 187 F-SG-------H---------GSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 187 ~-~~-------h---------~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
- .| - -..-..+.|+||+++||....| ..|+.+.+.. .......-..+..+.+..-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCC
Confidence 1 11 0 0112457899999998876543 3444443210 00000000012222222111
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE-E-e---ccCCCCEEEEEECCCCCeE--EEEeCCCc---EEEEeCCCCCcceecc-
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVS-S-L---VSHTDSIECIGFSRSSPWA--ATGSMDQK---LIIWDLQHSLPRSTCD- 317 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~-~-~---~~h~~~i~~v~~~~~~~~l--~s~s~dg~---i~iwd~~~~~~~~~~~- 317 (394)
.-- ..-.+.++|+.+++... . . ..-...+..+.|.+++..| ...+.+.. +.++|..+........
T Consensus 153 ~~n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPN----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcC----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 110 01246678888776431 1 1 2234568889999998833 33444443 5556765543332221
Q ss_pred -CCCC---EEEEEEe-CCC-CEEEEEeCCCe--EEEEECCCCeEEEEeecccCceeE-EEEccCCCEEE-EEeCC--CcE
Q 016187 318 -HEDG---VTCLMWL-GTS-KYVVTGCVDGK--VRVWDSLSGDCVRTFSGHRDAIQA-ISVSAHQDFLV-SVSLD--GTA 385 (394)
Q Consensus 318 -~~~~---v~~~~~~-~~~-~~l~sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~-s~s~d--g~i 385 (394)
.... -....+. +++ .+|.....+|- |++.+...+. .+.++...-.|.. +.+.++++.|. ++..+ +.-
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 1111 1233444 444 45555556775 5555665555 4466655666755 67777766544 44442 344
Q ss_pred EEEec
Q 016187 386 RVFEI 390 (394)
Q Consensus 386 ~iw~~ 390 (394)
.+|.+
T Consensus 308 ~lY~v 312 (353)
T PF00930_consen 308 HLYRV 312 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0082 Score=58.54 Aligned_cols=213 Identities=10% Similarity=0.032 Sum_probs=107.1
Q ss_pred eEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 88 KGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 88 ~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
.+..||..+.++.. .++..... .+++. .++..++.||.+ ..+..||+.+..+...-.-+........-.-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 46678888777654 22211111 12222 356677777754 3467888877755321111111111112223
Q ss_pred CCCEEEEecCCC-----eEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCCC-------------------
Q 016187 160 RGHIVLAGSEDS-----TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA------------------- 213 (394)
Q Consensus 160 ~~~~l~~~s~d~-----~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg------------------- 213 (394)
++++.+.|+.++ ++..||..+.+-.. .+.........+. -+|+..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 567778887653 47788887653221 1111111111122 2577777777553
Q ss_pred ----cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-Cc--EEEEeccCCCC
Q 016187 214 ----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITT-GK--VVSSLVSHTDS 280 (394)
Q Consensus 214 ----~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d------g~i~i~d~~~-~~--~~~~~~~h~~~ 280 (394)
++..||+.+++ ...+...+. .....-...-++++.+.|+.+ ..+..||..+ .+ .+..+......
T Consensus 429 ~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNI-WETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCe-EeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778887754 222221111 111111223356777777754 2467888886 33 33333333333
Q ss_pred EEEEEECCCCCeEEEEeCCC--cEEEEeCCC
Q 016187 281 IECIGFSRSSPWAATGSMDQ--KLIIWDLQH 309 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~dg--~i~iwd~~~ 309 (394)
...+.+ ++.+.+.|+.++ .+..||+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 333333 567788888887 566666654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=61.03 Aligned_cols=136 Identities=18% Similarity=0.366 Sum_probs=94.7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe-------EEEEeCCCcEEEEeCCCCCc---ceeccC-
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW-------AATGSMDQKLIIWDLQHSLP---RSTCDH- 318 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~-------l~s~s~dg~i~iwd~~~~~~---~~~~~~- 318 (394)
++..+..-..|+-.|+..|+++....-+.+ |+-+.+.|+... -+.|-.+..|.-||++-... .....|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666778899999999999998877766 777778886532 23466688899999873221 111111
Q ss_pred ---CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 319 ---EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 319 ---~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.....|.+-. ...++++||.+|.|++||- .+.. ...|.|-+.+|..|..+.+|++|+..+ +..+.+-+
T Consensus 427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 1224454433 4459999999999999996 4444 345889999999999999999988655 34444433
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.064 Score=50.45 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=117.0
Q ss_pred EEEEEEcCCCCcEEEEe----cCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeCCC-----------c
Q 016187 67 VYSVACSPTDATLVATG----GGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDG-----------L 130 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg----~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~d~-----------~ 130 (394)
+...+++|++..++.+- +...++++.|+++++.+.. +..- .. ..+.|.++++.|+-...+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-cc-ceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34567899766554442 2234589999999987653 2321 11 2399999998776555433 3
Q ss_pred EEEEeCCCCceE--EEEecCCCC--EEEEEEcCCCCEEEEecC---C-CeEEEEeCCcc----ceeeeecccCcCeE-EE
Q 016187 131 VQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA----AYLNMFSGHGSSVT-CG 197 (394)
Q Consensus 131 i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~s~---d-~~i~iw~~~~~----~~~~~~~~h~~~v~-~~ 197 (394)
|+.|.+.+.... ..+...... ...+..++++++++..+. + ..+++.+.... ...+.+......+. .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888776432 445554443 567888999997764332 2 45777787764 22233333332332 23
Q ss_pred EECCCCCeEEEEe---CCCcEEEEcCCCCce--EE-EEcCCCCcccCeEEEEEcCCCC-EEEEEeCCC--cEEEEECCCC
Q 016187 198 DFTPDGKTICTGS---DDATLRVWNPKSGEN--IH-VIRGHPYHTEGLTCLTISADST-LALSGSKDG--SVHMVNITTG 268 (394)
Q Consensus 198 ~~~~~~~~l~s~~---~dg~i~vwd~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg--~i~i~d~~~~ 268 (394)
... .+.+++... ..+.|...++..... .. .+-. +...+.-..+...+. +++....++ .|+++++..+
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 222 333333332 235566666665542 11 2221 222222222333333 444444444 5788898834
Q ss_pred cEEEEecc-CCCCEEEEEECCCCCeEE--EEeC--CCcEEEEeCCCC
Q 016187 269 KVVSSLVS-HTDSIECIGFSRSSPWAA--TGSM--DQKLIIWDLQHS 310 (394)
Q Consensus 269 ~~~~~~~~-h~~~i~~v~~~~~~~~l~--s~s~--dg~i~iwd~~~~ 310 (394)
.....+.. -.+.|..+...++...+. ..|. -+++.-||+.+.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44433332 233455555445444322 2221 234555566544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00014 Score=59.55 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=88.8
Q ss_pred EEEEecCCCeEEEEeCCcccee-eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 241 (394)
.+...+.|+.++-++++..+.. +.-.-|..-. ..-.-+..++.|+.+|.|.+|...-......+ .......+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHh--hhccccccee
Confidence 4556677888887776543321 1111111110 11123567899999999999987521110000 0011122322
Q ss_pred E-EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEE--eCCCcEEEEeCCC
Q 016187 242 L-TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATG--SMDQKLIIWDLQH 309 (394)
Q Consensus 242 ~-~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~--s~dg~i~iwd~~~ 309 (394)
. ....++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+.+++.+ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2 223345688899999999999999998887777777 677777777777888887 8888888888764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00041 Score=64.88 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE-EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
-.+..+-|+|.-.++|.+..+|.+.+..++ -+.+-.++-|+..++ +++|.|||+.||.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 357778999999999999999999998887 555667776777777 999999999999999999999999999876654
Q ss_pred EcCCCCcccCeEEEEEc
Q 016187 229 IRGHPYHTEGLTCLTIS 245 (394)
Q Consensus 229 ~~~~~~~~~~i~~~~~~ 245 (394)
... .....|.++.|+
T Consensus 100 ~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLF--SVETDISKGIWD 114 (665)
T ss_pred ccc--ccccchheeecc
Confidence 211 123456666665
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0088 Score=58.33 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=85.0
Q ss_pred CcEEEEEEcCCCCcEEEEec-----CCCeEEEEEcC-CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-CcEEEE---
Q 016187 65 DEVYSVACSPTDATLVATGG-----GDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIW--- 134 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~-----~d~~v~~w~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vw--- 134 (394)
..+...+.+|++..+.++.. .|..-.||-.. .++....+.+. ..+.-.|+|+|+.|++.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 35678889997666555542 34444555433 22333333443 37889999999988777533 222232
Q ss_pred --------eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE---EeCCccce-e---eee-cccCcCeEEEE
Q 016187 135 --------DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAAY-L---NMF-SGHGSSVTCGD 198 (394)
Q Consensus 135 --------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i---w~~~~~~~-~---~~~-~~h~~~v~~~~ 198 (394)
++..++... ...+.|..+.|+|+|..++... ++.|++ -....+.. + ..+ .+-...+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 333332221 2245799999999999776655 467766 33333331 1 112 22233457789
Q ss_pred ECCCCCeEEEEeCCCcEEEEcC
Q 016187 199 FTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
|.+++.++ .+..++.-.+|.+
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EecCCEEE-EEecCCCCceEEE
Confidence 99988855 5555555555654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0081 Score=43.90 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred EEEEEEcC---CCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 67 v~~~~~~p---~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
|.++++.+ ++..-|..|+.|..||+|+- .+.+..+.. .+.|++++-... .+++-+..+|+|-+|+-....+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence 66777655 23456778999999999984 456666664 456778877665 67888999999999986433332
Q ss_pred EEecCCCCEEEEEEcC-CC---CEEEEecCCCeEE
Q 016187 144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW 174 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~-~~---~~l~~~s~d~~i~ 174 (394)
++.. ..+.++++.. ++ ..|++|-.+|.|-
T Consensus 77 -iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 -IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2322 2355555443 32 2677777777654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=42.95 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=62.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
+.|++|+.|..|++|+ ....+..+.. ++.|.++.-... ..++.+-..|+|-+|+-....=+ ......++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR--iKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR--IKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee--eccCCCeEEEEEE
Confidence 6889999999999998 3456666654 456666666555 56888899999999986433222 2233346677665
Q ss_pred CCC----CEEEEEeCCCeEEE
Q 016187 329 GTS----KYVVTGCVDGKVRV 345 (394)
Q Consensus 329 ~~~----~~l~sg~~dg~i~i 345 (394)
.-. +-|++|-.+|+|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 432 37889988988753
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.017 Score=56.33 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=100.1
Q ss_pred CcccCEEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC------
Q 016187 105 GHKDSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------ 170 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s------~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 170 (394)
+....+.+.++||+|+.++... .|. .|.+++. .+.......+ .....-.|+|++..+++.+..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 3334688999999999876554 244 4444454 2222222222 236778999998766665432
Q ss_pred ------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE---EcCCCCceEEEEc----CCCCccc
Q 016187 171 ------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKSGENIHVIR----GHPYHTE 237 (394)
Q Consensus 171 ------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v---wd~~~~~~~~~~~----~~~~~~~ 237 (394)
+.+++..+..+...+ .....|..+.|+|||+.++... +|.|.+ -....|. ..+. .......
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGD 497 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCC
Confidence 233333443332221 2245699999999999988765 477766 3333443 1111 0011122
Q ss_pred CeEEEEEcCCCCEEEEEeCCCc--EEEEECCCCcEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 238 GLTCLTISADSTLALSGSKDGS--VHMVNITTGKVVSSLVS--HTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~--h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
.+..+.|.+++.++ ++..++. +...++.... ...+.. ...++.+|+-+++ -++....++.+.
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 35778899998865 4444443 4444443222 111122 2456666766653 344445555443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.048 Score=46.98 Aligned_cols=170 Identities=14% Similarity=0.211 Sum_probs=109.8
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+.|-+..|.++.|+|+.+.|++......-.||=...|+.+.+++-.. .....+.|...+.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45556669999999999999999888888888778899887765321 23445667777777777777888888765432
Q ss_pred ce----------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE---EEEcCCC----CcccCeEEEEE
Q 016187 182 AY----------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---HVIRGHP----YHTEGLTCLTI 244 (394)
Q Consensus 182 ~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~----~~~~~i~~~~~ 244 (394)
.. +..........-.++|.|..+.|+.+=.-.-++|+.+...... +....+. .....+..+.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 11 0111111345567899998888888877777777765533211 1111110 11234566777
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCCcEEEE
Q 016187 245 SA-DSTLALSGSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 245 ~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~ 273 (394)
++ .+.+++-+.+++.+.-.|... .++..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ 269 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG-EVIEL 269 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC-Ceeee
Confidence 75 566777788888888888643 33433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00052 Score=68.02 Aligned_cols=100 Identities=15% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
.+.+++.|+..|.+...|+...... .-..-..+|++++|+.+|+.++.|-.+|.|.+||..+++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999999888765432 11223467999999999999999999999999999999999999888777666
Q ss_pred EEEc---cCCCEEEEEeCCCcEEEEec
Q 016187 367 ISVS---AHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 367 l~~~---~~~~~l~s~s~dg~i~iw~~ 390 (394)
+-+. .++..++++..-|. +|++
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5443 45567777777775 6764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.12 Score=50.18 Aligned_cols=271 Identities=13% Similarity=0.133 Sum_probs=152.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEE----------EEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEW----------VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+.+++.++.++.|.-.|..+|+.+-.+.... ..+.. +++ .+..++.++.|+.+.-.|..+++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999998876654211 11111 111 1345777888999999999988876443
Q ss_pred cc--cC--cCeEEEEECCCCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCc----------------------
Q 016187 188 SG--HG--SSVTCGDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYH---------------------- 235 (394)
Q Consensus 188 ~~--h~--~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~---------------------- 235 (394)
.. +. ..+++.-..-++ .++.+. .+|.|.-+|.++|+.+-.+...+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 32 11 111110000134 444443 2689999999999876554322110
Q ss_pred -----cc-C-eEEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCcEEEEecc--CCC-------CEEE
Q 016187 236 -----TE-G-LTCLTISADSTLALSGSKD-----G-----------SVHMVNITTGKVVSSLVS--HTD-------SIEC 283 (394)
Q Consensus 236 -----~~-~-i~~~~~~~~~~~l~~g~~d-----g-----------~i~i~d~~~~~~~~~~~~--h~~-------~i~~ 283 (394)
.. . -..+++.|+..+++.+..+ + +|.-.|+++|+..=.++. |.. ...-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 00 0 1234677766666666522 2 677788889987654443 211 1111
Q ss_pred EEECCCCC---eEEEEeCCCcEEEEeCCCCCcce--------ec----cCC-------------------CC--------
Q 016187 284 IGFSRSSP---WAATGSMDQKLIIWDLQHSLPRS--------TC----DHE-------------------DG-------- 321 (394)
Q Consensus 284 v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~--------~~----~~~-------------------~~-------- 321 (394)
+.+..+++ .++.+..+|.+.+.|-.+.+... .. ... ..
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~G 385 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLG 385 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcC
Confidence 22334554 67788889988888876543310 00 000 00
Q ss_pred ---EEEEEEeCCCCEEEEEeC---------------------------------CCeEEEEECCCCeEEEEeecccCcee
Q 016187 322 ---VTCLMWLGTSKYVVTGCV---------------------------------DGKVRVWDSLSGDCVRTFSGHRDAIQ 365 (394)
Q Consensus 322 ---v~~~~~~~~~~~l~sg~~---------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 365 (394)
-..+++.|+..++..... -|.|.-+|+.+|+.+-+.........
T Consensus 386 g~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~ 465 (527)
T TIGR03075 386 GKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG 465 (527)
T ss_pred CCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCC
Confidence 011345554444433222 25688889999988776653221122
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 366 AISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.. +.-.+.+++.++.+|.++.+|.++-
T Consensus 466 ~~-l~t~g~lvf~g~~~G~l~a~D~~TG 492 (527)
T TIGR03075 466 GV-LATAGDLVFYGTLEGYFKAFDAKTG 492 (527)
T ss_pred cc-eEECCcEEEEECCCCeEEEEECCCC
Confidence 22 2224557777888999999997764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0076 Score=54.57 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=103.4
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEE---EEEcCC----CCEEEEEeC----------CCcEEEEECCCC----cEE
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTC---LTISAD----STLALSGSK----------DGSVHMVNITTG----KVV 271 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~---~~~~~~----~~~l~~g~~----------dg~i~i~d~~~~----~~~ 271 (394)
..|++.|..+.+.+..+.-.+ .+.+++ +.+..+ ..++++|.. .|.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887777665543221 122333 334432 467776653 288999999884 222
Q ss_pred EEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 272 SSL--VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 272 ~~~--~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
..+ ....++|+++.-- ++ .|+.+ ..++|.+|++.... ...... ....+.++... +++++.|..-..+.++
T Consensus 80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 221 2346889888766 33 33333 35889999987665 333322 23356666554 5599999988888877
Q ss_pred ECCC-CeEEEEee--cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 347 DSLS-GDCVRTFS--GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 347 d~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.... ...+..+. .....++++.|-++++.++.+..+|.+.++...
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4332 33333333 234557888887666799999999999999865
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.034 Score=54.23 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=113.4
Q ss_pred CcEEEEecCC------CeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEE
Q 016187 77 ATLVATGGGD------DKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d------~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~~~~~ 143 (394)
+.+++.||.+ ..+..+|..++++.....- +...-.++++. +|...++||.| .++..||..+.++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4577777776 3567888888766543221 22222334433 46778889888 356788888777654
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeeeecccCcCeEEEE-ECCCCCeEEEEeCCC----
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMFSGHGSSVTCGD-FTPDGKTICTGSDDA---- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~dg---- 213 (394)
.-.-.......-.-.-.|.+.++|+.|| ++..||..+.+-...- .........+ ..-+|+..+.|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 2111111111111122577888998886 4667877665421111 1111111111 223677778887554
Q ss_pred --cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcEE--EEeccCCCCEEEE
Q 016187 214 --TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS-----VHMVNITTGKVV--SSLVSHTDSIECI 284 (394)
Q Consensus 214 --~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~-----i~i~d~~~~~~~--~~~~~h~~~i~~v 284 (394)
++..||+.+++-. .+........... ...-++.+++.|+.|+. +..+|..+.+-. ..+......+..+
T Consensus 443 l~sve~YDP~t~~W~-~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 443 LNSVECYDPETNTWT-LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred cceEEEEcCCCCcee-ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 5678898876521 1111111111111 22235778888887763 667887766532 2222222222222
Q ss_pred EECCCCCeEEEEeCCCc
Q 016187 285 GFSRSSPWAATGSMDQK 301 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~ 301 (394)
.. ++...+.|+.||.
T Consensus 520 ~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGN 534 (571)
T ss_pred EE--CCEEEEEecccCc
Confidence 22 3556677776653
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.16 Score=50.78 Aligned_cols=318 Identities=15% Similarity=0.162 Sum_probs=166.8
Q ss_pred CcEEEEEEcCC--CCc---EEEEecCCCeEEEEEc-CCCeeeEe--ecC--cccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 65 DEVYSVACSPT--DAT---LVATGGGDDKGFFWRI-NQGDWASE--IQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 65 ~~v~~~~~~p~--~~~---~lasg~~d~~v~~w~~-~~~~~~~~--~~~--h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.+|-|+.++|. +.. ++|-|..+..+++--. .....+.. +.+ -...|--.+|-.|..+|.++..||.+.-+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~f 610 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYF 610 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEE
Confidence 57889988875 333 7888866665544322 22221111 111 12345556666678899999999998765
Q ss_pred --eCCCCceEEE--EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC--CCeEEE
Q 016187 135 --DPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--GKTICT 208 (394)
Q Consensus 135 --d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s 208 (394)
|..+|..... ..-...|+.--.|+..+..-+-+..|.-..+|..+..-....+.-.... .-+.|+.+ ...|++
T Consensus 611 v~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~-~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 611 VLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN-HMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh-hhcccccccCCceEEE
Confidence 4555543211 1122345555566655554444445555555554433221111100000 01123321 234555
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-----------CC---CcEEEEECCCCcEEEEe
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KD---GSVHMVNITTGKVVSSL 274 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-----------~d---g~i~i~d~~~~~~~~~~ 274 (394)
+. .+.+++--+..-+.++.-. .+. ......+++.+....+.+.+ .. ..++++|-.+-+.+...
T Consensus 690 ~~-~~~l~i~tid~iqkl~irt-vpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRT-VPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred ec-CCceEEEEecchhhcceee-ecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 44 3456666554333322211 111 12233344444222222221 11 23566666665554432
Q ss_pred ccC----CCCEEEEEECCC-CCeEEEEe----------CCCcEEEEeCCCCCcceeccC----CCCEEEEEEeCCCCEEE
Q 016187 275 VSH----TDSIECIGFSRS-SPWAATGS----------MDQKLIIWDLQHSLPRSTCDH----EDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 275 ~~h----~~~i~~v~~~~~-~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~ 335 (394)
+-. .-.|.++.|..+ +.+++.|. ..|+|.+|..... ......| .+.+.++.- -++++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEE
Confidence 211 123455568777 66777664 2467777766541 1111122 233444332 2455554
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+-...|++|+..+.+.++.-..|..++..+...-.+..++.|..-+++.+-..
T Consensus 845 --~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 845 --GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred --ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 45788999999888888777788889999999999999999988888776543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0042 Score=57.26 Aligned_cols=141 Identities=19% Similarity=0.401 Sum_probs=97.5
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-------eEEEEeCCCcEEEEcCCCCce--EEEEcCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-------TICTGSDDATLRVWNPKSGEN--IHVIRGHP 233 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~ 233 (394)
+|.++.....++-.|++.++.+..+.-|.. |+-+.+.|+.+ .-+.|-.|..|.-||++-... +.....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667888889999999999988876 66677887653 234566788999999985332 22333333
Q ss_pred Cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 234 YHTE-GLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 234 ~~~~-~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
+... ...|.+... ..++++|+.+|.|++||- .++. -..+.+-..+|..|..+.+|.|++..+ +..+.+-++
T Consensus 427 y~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3222 344544443 457889999999999997 4433 334566778999999999999877543 566776665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.1 Score=46.01 Aligned_cols=219 Identities=18% Similarity=0.237 Sum_probs=120.1
Q ss_pred CCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc--------
Q 016187 160 RGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-------- 230 (394)
Q Consensus 160 ~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------- 230 (394)
.++.|+.|+.+| +++++... ....+.. +...|..+...|+-+.|+.-+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467888898888 89998832 2222222 233488899988777666654 4999999986543322100
Q ss_pred ---CCCCcccCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 231 ---GHPYHTEGLTCLT--ISADSTLALSGSKDGSVHMVNITTG-----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 231 ---~~~~~~~~i~~~~--~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-....++...+ -...+...++.....+|.+|..... +.++.+. -.+.+.++.|. +..++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 0001122344444 2233444444444558888876542 3444543 34778888888 4456666544
Q ss_pred cEEEEeCCCCCcceeccCC------------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeecccCceeE
Q 016187 301 KLIIWDLQHSLPRSTCDHE------------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFSGHRDAIQA 366 (394)
Q Consensus 301 ~i~iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~ 366 (394)
...+.|+.+.......... .....+.-.+++.+|++. +. +-+|=-..|+..+ .+.-.. ....
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W~~-~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQWSS-APQS 233 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cc-eEEEEcCCCCcCcccEEEcCC-chhE
Confidence 4777888755433322111 111222233445666643 32 3333223454443 333322 4456
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+++. .+||+..+.++ |.||++.+-
T Consensus 234 ~~~~--~pyli~~~~~~-iEV~~~~~~ 257 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSNS-IEVRSLETG 257 (275)
T ss_pred EEEE--CCEEEEECCCE-EEEEECcCC
Confidence 6664 47888777654 999998764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=44.51 Aligned_cols=234 Identities=17% Similarity=0.207 Sum_probs=125.7
Q ss_pred EEEEcCCCCcEEEEecCCCe-EEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC-
Q 016187 69 SVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD-----GLVQIWDPSSG- 139 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~-v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~- 139 (394)
.++++|.-++-++-+-.=|+ ..++|.+..+.+.++..-++.= --=.|||||.+|...-.| |.|=|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46778876666665555555 3578887766554442211100 002499999999866544 67889998744
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecC------C------------CeEEEEeCCccceee--eec--ccCcCeEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------D------------STVWMWNADRAAYLN--MFS--GHGSSVTCG 197 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~------d------------~~i~iw~~~~~~~~~--~~~--~h~~~v~~~ 197 (394)
..+..+..+.-....+.|.++|..++.+.. | -++.+.+..++..+. .+. .+.-.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 233455666666677899999998776533 1 112223323333222 122 344567777
Q ss_pred EECCCCCeEEEEeCCCcEE-----EEcCCCCceEEEEcCCCC----cccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 016187 198 DFTPDGKTICTGSDDATLR-----VWNPKSGENIHVIRGHPY----HTEGLTCLTISADST-LALSGSKDGSVHMVNITT 267 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~-----vwd~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~ 267 (394)
+..+||..++.+-.-|.=. +=-...++.+..+...+. ....+-+++.+.+.. ..+++-..+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 7777776655553322110 000112222222211100 112355666665444 444555566788999999
Q ss_pred CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 268 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
|.++....- ..+...-+...-++..+.+|.+.++.
T Consensus 312 G~vv~~a~l----~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GAVVSEAAL----PDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CcEEecccc----cccccceeccCceEEecCCceEEecc
Confidence 987754321 12222233333456667788888774
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.034 Score=54.22 Aligned_cols=185 Identities=11% Similarity=0.168 Sum_probs=90.0
Q ss_pred CcEEEEecCCC------eEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceEE
Q 016187 77 ATLVATGGGDD------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d~------~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~~~~ 143 (394)
+.+++.||.++ .+..||..+.++... +.........+. -++..++.||.+ ..+..||+.+.+...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45666676543 466788877776432 111112222222 356777777765 357788888776543
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCC------CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCCC--
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA-- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d------~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg-- 213 (394)
.-..+...........++++++.|+.+ ..+..||..+.+-... +....... + +...+++..+.|+.+.
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCC
Confidence 211111111111122356667777632 4578888776432211 11111111 1 1223556666665432
Q ss_pred ------cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 016187 214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTG 268 (394)
Q Consensus 214 ------~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 268 (394)
.+.+||+.+++= ..+...+........+.+ ++++++.|+.+ ..+.++|+.+.
T Consensus 451 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 388899877542 222221111111122222 56777777654 35666776654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.15 Score=45.25 Aligned_cols=162 Identities=14% Similarity=0.255 Sum_probs=84.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+......-...+..+.-++||+++++++.-....-||.-.......-......|..+.|.|++.+.+.+ ..+.|+.=+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 3444455556789999999999999888766666678865433333334456789999999998876654 778888776
Q ss_pred -CCccceeee----ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 178 -ADRAAYLNM----FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 178 -~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
......-.. ...-.-.+..++|.++++..++|+. |.+ +.....|+..+..+........+..+.|.+..+-++
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 222211111 1112234788999988777776654 544 334456676665543222234466777765555555
Q ss_pred EEeCCCcEEEE
Q 016187 253 SGSKDGSVHMV 263 (394)
Q Consensus 253 ~g~~dg~i~i~ 263 (394)
.| .+|.|.-|
T Consensus 292 lG-~~G~ll~~ 301 (302)
T PF14870_consen 292 LG-QDGVLLRY 301 (302)
T ss_dssp E--STTEEEEE
T ss_pred EC-CCcEEEEe
Confidence 44 56766544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0025 Score=63.47 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=74.0
Q ss_pred EEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 241 (394)
.++.|+..|.+...|....-. ...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+.....++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 456666667776666554211 1111123578999999999999999999999999999998888887766555666777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 777777888888888886 4543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.15 Score=42.48 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=66.3
Q ss_pred EEEEECCCCCeE-EEEeCCCcEEEEc--CCCCc-----eEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 195 TCGDFTPDGKTI-CTGSDDATLRVWN--PKSGE-----NIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 195 ~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
..++|+.+.+.+ +.-+.+-+|.-|| ..+|. .+..++.. ++.....-.+++..+|.+.++.-..++|..+|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 457888776655 4556677887787 55553 23333321 111111223455678899999999999999999
Q ss_pred CCCcEEEEeccCCCCEEEEEECC
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSR 288 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~ 288 (394)
.+|+.+.++.-.+..|+|++|-.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999988899999999974
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.062 Score=52.45 Aligned_cols=185 Identities=17% Similarity=0.253 Sum_probs=97.2
Q ss_pred CcEEEEecCC------CeEEEEEcCCCeeeEeec--CcccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEE
Q 016187 77 ATLVATGGGD------DKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d------~~v~~w~~~~~~~~~~~~--~h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~~ 143 (394)
+.+.+.||.| .++..||..+.++..... ......... .-+|.+.|+||.|| ++-.||..+.++..
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 4678889988 356678888877765322 111111111 23678889999886 47778887766543
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCC------eEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCCC--
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~------~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg-- 213 (394)
.-.-....-..-.-.-++.+.++|+.++ ++..||..+.+-.. .+..-.... .++ .-++...+.|+.|+
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTS 488 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCC
Confidence 2211111111111223577788888554 46678876654221 111111111 112 22566777888776
Q ss_pred ---cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 016187 214 ---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTG 268 (394)
Q Consensus 214 ---~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~ 268 (394)
+|..||+.+.+-. .+.........+-.+ .-++.+.++|+.|| ++..||..+.
T Consensus 489 ~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWT-MVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccceEEEEcCCCCcee-EcccCccccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 3777998876532 222221111112111 23567778888765 3444554443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=49.95 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCcEEEEecCCC-----eEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEEe
Q 016187 76 DATLVATGGGDD-----KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 76 ~~~~lasg~~d~-----~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d--~~i~vwd~~~~~~~~~~~ 146 (394)
+..+++.||.++ ++..||..+.++... +.........+ .-+|...+.||.+ .++..||..+.+....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345667777543 466788877766542 22212122222 2467777777754 357888877665543211
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCC---eEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 147 GPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 147 ~~~~~v~~~~~~~~~~~l~~~s~d~---~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
-+........-.-++++.+.|+.++ .+..||..+.+-... +....... ++ ..-+++..+.| |.+.+||+.
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecCC
Confidence 1111111112233577777777553 466788765432211 11111111 11 12345555666 457789987
Q ss_pred CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 016187 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTG 268 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~ 268 (394)
+++ ...+...+........+ .-++++.+.|+.++ ++..||..++
T Consensus 424 ~~~-W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNT-WTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCc-EeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 654 22333222111122222 23567777777542 3445554443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.24 Score=42.56 Aligned_cols=268 Identities=19% Similarity=0.247 Sum_probs=147.2
Q ss_pred cEEEEEEc-CCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCc-EEEEeCCCCceE
Q 016187 66 EVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLK 142 (394)
Q Consensus 66 ~v~~~~~~-p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~-i~vwd~~~~~~~ 142 (394)
+|+.-+|. +++...+++-+.+|.+.. .....-++| .|+|+|.-. -++-+-.-|+ ..++|....+..
T Consensus 36 avfasaf~~~dgs~g~a~~~eaGk~v~------~~~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~~~p 104 (366)
T COG3490 36 AVFASAFDARDGSFGAATLSEAGKIVF------ATALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEP 104 (366)
T ss_pred chheeeeeccCCceeEEEEccCCceee------eeecccccC-----CeecCCCCcceEEEEecCCceEEEECCCCCcCc
Confidence 44444443 344455666665555421 111122445 477777653 3455555555 357888877765
Q ss_pred EEEecCCCC--EEEEEEcCCCCEEEEecCC-----CeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeC---
Q 016187 143 CTLEGPGGG--VEWVSWHPRGHIVLAGSED-----STVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD--- 211 (394)
Q Consensus 143 ~~~~~~~~~--v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--- 211 (394)
.++....+. .-.=.|+|+|.+|.+.-.| |.|-+||...+ +.+..+..|.-....+.+.+||++++.+..
T Consensus 105 v~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIe 184 (366)
T COG3490 105 VTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIE 184 (366)
T ss_pred EEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCcee
Confidence 554322211 1123689999988775443 67889998743 456678888877788899999999887642
Q ss_pred ---------------CCcEEEEcCCCCceEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcE
Q 016187 212 ---------------DATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKV 270 (394)
Q Consensus 212 ---------------dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~ 270 (394)
.-++.+-|..+|+.+.+.... ..+.-.+..+.+.++|+.++.+-.-| -..+=-...++.
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 113333343444433221111 12344688888999888777654322 111212233444
Q ss_pred EEEecc-------CCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 271 VSSLVS-------HTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 271 ~~~~~~-------h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
+.-+.. ....|-+|+.+.+..+++ |+-..+...+||..+........-.+ ...+ .+...-++..+.+|.
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGv--a~~~~gf~vssg~G~ 341 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGV--AAAKGGFAVSSGQGR 341 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-cccc--eeccCceEEecCCce
Confidence 433322 124577788886665554 45556677899998765443221111 1111 122333445566788
Q ss_pred EEEEE
Q 016187 343 VRVWD 347 (394)
Q Consensus 343 i~iwd 347 (394)
+.++.
T Consensus 342 ~~~~s 346 (366)
T COG3490 342 IIFYS 346 (366)
T ss_pred EEecc
Confidence 88774
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.33 Score=42.21 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=87.8
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe-CCccc--
Q 016187 109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAA-- 182 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~-~~~~~-- 182 (394)
.+.+.++|++|+.+|... ....+.++... .....+. ....+..-+|.+++.+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999776555 33445555433 2222221 233677789999988777777666666664 22222
Q ss_pred eee-eecccCcCeEEEEECCCCCeEEEEe---CCCcEEEEcCCCCce--EEEE----cCCCCcccCeEEEEEcCCCCEEE
Q 016187 183 YLN-MFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVI----RGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 183 ~~~-~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~--~~~~----~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
... ....-...|+.++++|||..+|... .++.|.+=-+..... ...+ .........++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 111 1111122899999999999887655 346666654321110 0111 11111234688999999999888
Q ss_pred EEeCCCc
Q 016187 253 SGSKDGS 259 (394)
Q Consensus 253 ~g~~dg~ 259 (394)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.62 Score=43.30 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCC----EEEEEEeC--------------CCCEE-EEEe
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDG----VTCLMWLG--------------TSKYV-VTGC 338 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~----v~~~~~~~--------------~~~~l-~sg~ 338 (394)
..+.++..+|++.+.|+...-|+|.|+|+......... +..+. +....-.. ...+| +-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45778999999999999988899999999765433221 11111 00000000 01233 3455
Q ss_pred CCCeEEEEECCCCeEEEEeec
Q 016187 339 VDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.-|.|.||.+++|..+..++.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 689999999999988877763
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.012 Score=35.83 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=29.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
...|.+++|+|...+||.++.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999988 443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.52 Score=40.59 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=115.9
Q ss_pred eEeecC-cccCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 100 ASEIQG-HKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 100 ~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
+.+++. .......+.|..+|.++-+.+.-| .|+.+|+.+|+......-+.. --..++.. ++++..-.-.++...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 444442 233456788878888888887666 789999999998765544332 11233333 2344455567899999
Q ss_pred EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEcCCCCEEEE
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~ 253 (394)
||..+.+.+..+.-. ..=..++ .+++.|+.......|..+|+.+.+....+... ......++-+-+- +|.+.+=
T Consensus 115 yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 999988777766433 3334554 46777887777888999999887766555421 1112234555554 4555554
Q ss_pred EeCCCcEEEEECCCCcEEEEecc------------C---CCCEEEEEECCCCC-eEEEE
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVS------------H---TDSIECIGFSRSSP-WAATG 296 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~------------h---~~~i~~v~~~~~~~-~l~s~ 296 (394)
-=....|...|..+|++...+.. + .+-.+.+|+.|... +++||
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 44567788899999998776521 1 24578999987755 45554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.2 Score=44.80 Aligned_cols=238 Identities=8% Similarity=0.027 Sum_probs=117.8
Q ss_pred cCEEEEEEcCCCCEEEEEeC-C----CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC------CeEEEE
Q 016187 108 DSVSSLAFSMDGQLLASGGL-D----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMW 176 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~-d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------~~i~iw 176 (394)
-.+..+.+||||++|+-+.. + ..|++-|+.+|+.+....... . ..++|.++++.|+....+ ..++.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998875532 2 368888998886432211111 1 458999998866554332 367778
Q ss_pred eCCcc--ceeeeecccCcCeE-EEEECCCCCeEEEEeC---CCcEEEEcCC--CCceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 177 NADRA--AYLNMFSGHGSSVT-CGDFTPDGKTICTGSD---DATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 177 ~~~~~--~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~---dg~i~vwd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
++.+. +-...+........ ....+.++++++..+. ++.+.+++.. .+.....+.. . ......+. ...+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~ 280 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR-R--KDHEYSLD-HYQH 280 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC-C--CCCEEEEE-eCCC
Confidence 88776 32333333222232 3334447877654433 3568888842 3332222211 1 11112222 2233
Q ss_pred CEEEEEeC---CCcEEEEECCCCcEEEEeccC-C-CCEEEEEECCCCCeEEEEeCCCcEEEE--eCCCCCcceec-cCCC
Q 016187 249 TLALSGSK---DGSVHMVNITTGKVVSSLVSH-T-DSIECIGFSRSSPWAATGSMDQKLIIW--DLQHSLPRSTC-DHED 320 (394)
Q Consensus 249 ~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h-~-~~i~~v~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~-~~~~ 320 (394)
.+++.... ...|...++........+..+ . ..|..+.+. ...++++...++.-+++ ++......... ....
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 359 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPA 359 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCc
Confidence 33333322 223444455421222334445 2 367778777 33456666667765554 44322222111 1122
Q ss_pred CEEEEEEe--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 016187 321 GVTCLMWL--GTSK-YVVTGC---VDGKVRVWDSLSGD 352 (394)
Q Consensus 321 ~v~~~~~~--~~~~-~l~sg~---~dg~i~iwd~~~~~ 352 (394)
.+..+.++ +++. ++++.+ .-+.++.+|..+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 23323333 3333 444333 24678888887664
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.057 Score=54.65 Aligned_cols=144 Identities=13% Similarity=-0.004 Sum_probs=89.3
Q ss_pred CEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCce--------EEE---EecCCCCEEEEEEcCCCC-EEEEecCCCeEE
Q 016187 109 SVSSLAFSMDGQLLAS--GGLDGLVQIWDPSSGNL--------KCT---LEGPGGGVEWVSWHPRGH-IVLAGSEDSTVW 174 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t--~s~d~~i~vwd~~~~~~--------~~~---~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~ 174 (394)
++..+...+|+...+. .+.+-.|..||+.+-.. ++. .........++.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555666777765443 33445788899764321 111 111123345678888643 356677889888
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc-cCeEEEEEcCCCCEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALS 253 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 253 (394)
+..+........-..-....+|++|+|.|+.++.|-..|++.-|.+. .+....+...+... ..|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88765433222222345677899999999999999999999999764 33333333333333 56888888766666554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.46 Score=46.42 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccce
Q 016187 117 MDGQLLASGGLDG------LVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAY 183 (394)
Q Consensus 117 ~~g~~l~t~s~d~------~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~ 183 (394)
.++..++.||.++ .+..||..+.+....-..+ ......+ .-++.+++.|+.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455666776542 5778888877664321111 1111122 2356677777765 3467788765432
Q ss_pred eee--ecccCcCeEEEEECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 184 LNM--FSGHGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 184 ~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
... +....... +++ .-+++..+.|+.+ ..+..||+.+++ ...+...+....... +...++.+++.|+
T Consensus 371 ~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~--~~~~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGC--AIYHDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCce--EEEECCEEEEECC
Confidence 211 11111111 111 2356666677632 357889987653 222222121111111 2223566777776
Q ss_pred CCC--------cEEEEECCCCc
Q 016187 256 KDG--------SVHMVNITTGK 269 (394)
Q Consensus 256 ~dg--------~i~i~d~~~~~ 269 (394)
.+. .+.+||..+++
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ccCCCCCcccceEEEecCCCCc
Confidence 432 37888887764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=35.14 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
...|.++.|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999987 4443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.7 Score=44.07 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC--------CEEEEEEcC----------------CCCEEEEecCCCeEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--------GVEWVSWHP----------------RGHIVLAGSEDSTVW 174 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~~s~d~~i~ 174 (394)
+..|+.++.++.|.-.|..+|+.+-.+..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788888999999999988766542211 112233321 234778888999999
Q ss_pred EEeCCccceeeeecccCcCeE-------------EEEECC--CCCeEEEEeC----------CCcEEEEcCCCCceEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVT-------------CGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI 229 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~ 229 (394)
-.|.++++..-.+.. .+.+. ...-.| .+..++.|+. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999998887654421 11110 011112 2345666643 688999999999987655
Q ss_pred c
Q 016187 230 R 230 (394)
Q Consensus 230 ~ 230 (394)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.2 Score=41.13 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred CCCeEEEEe-CCCcEEEEcCCCC----ceEEEEcCCCCcc----cCeEEEEEcCCCCEEEEEe--C----CCcEEEEECC
Q 016187 202 DGKTICTGS-DDATLRVWNPKSG----ENIHVIRGHPYHT----EGLTCLTISADSTLALSGS--K----DGSVHMVNIT 266 (394)
Q Consensus 202 ~~~~l~s~~-~dg~i~vwd~~~~----~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~g~--~----dg~i~i~d~~ 266 (394)
+.++|+..+ ..+.|.|.|+.+. +..+.++....+. .....+-.-|+|.+++++- . -|.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666555 6778999998743 2233333211111 1122344557887777742 2 2467788877
Q ss_pred CCcEEEEeccC---CCCEEEEEECCCCCeEEEEeC--------------------CCcEEEEeCCCCCcceeccCCC---
Q 016187 267 TGKVVSSLVSH---TDSIECIGFSRSSPWAATGSM--------------------DQKLIIWDLQHSLPRSTCDHED--- 320 (394)
Q Consensus 267 ~~~~~~~~~~h---~~~i~~v~~~~~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~--- 320 (394)
+..+....... ...-..+.+.|....++|... ..++.+||+.+...........
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 76666554432 223456778888888887652 4589999998876665554332
Q ss_pred CEEEEEEe--CCCCEEEEEe-CCCeEEEEEC-CCCe----EEEEeec-----------------ccCceeEEEEccCCCE
Q 016187 321 GVTCLMWL--GTSKYVVTGC-VDGKVRVWDS-LSGD----CVRTFSG-----------------HRDAIQAISVSAHQDF 375 (394)
Q Consensus 321 ~v~~~~~~--~~~~~l~sg~-~dg~i~iwd~-~~~~----~~~~~~~-----------------h~~~v~~l~~~~~~~~ 375 (394)
.+..+.|. |+..+-++|+ -.++|..|-- ..++ .+-.+.. -..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 24456665 4455544443 3444555432 3332 1112211 0244799999999998
Q ss_pred EEEEe-CCCcEEEEeccCC
Q 016187 376 LVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 376 l~s~s-~dg~i~iw~~~~~ 393 (394)
|.... ..|.||.||+.+.
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 87554 6899999999874
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.78 Score=38.43 Aligned_cols=133 Identities=12% Similarity=0.034 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--------CCCEEEEEECCCCCeE-EEEeCCCcEEEEe--C
Q 016187 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH--------TDSIECIGFSRSSPWA-ATGSMDQKLIIWD--L 307 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--------~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd--~ 307 (394)
.+--..+|+|++++--..|-.- .+....+.+..-+.+| -.--+.++|+.+.+.+ ++-+.+-+|.-|| .
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 4445678999985433332111 2222222222222222 2234567787766544 4455666777777 3
Q ss_pred CCCCcc---eec--c----CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 308 QHSLPR---STC--D----HE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 308 ~~~~~~---~~~--~----~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
.+.... ... . .+ ...-.++...+|.+.++.-..|+|.-.|..+|+.+.+++--...|++.+|...
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 322110 000 0 00 01122334557777777788899999999999999999988889999999743
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0056 Score=59.99 Aligned_cols=198 Identities=20% Similarity=0.337 Sum_probs=109.3
Q ss_pred ecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--CCceEEEEe----cC-CC---CEEEEEEcCCCCEEEEecCCC
Q 016187 103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPS--SGNLKCTLE----GP-GG---GVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~--~~~~~~~~~----~~-~~---~v~~~~~~~~~~~l~~~s~d~ 171 (394)
++|..+.|-.++|..- -..++ -.-|.+.||++. .|+....+. .+ .. .|.+.-|-++.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4566777878888431 11221 223678889864 455433321 11 22 334444445666777777888
Q ss_pred eEEEEeCCccceeeeecccCcCeEEE-----------EECCCCCeEEEEeCCCcEEEEcCC-----CCceEEEEcCCCCc
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCG-----------DFTPDGKTICTGSDDATLRVWNPK-----SGENIHVIRGHPYH 235 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~~~ 235 (394)
++++...++... ..+.+|+..++.+ .++|||+.|+.++.||.++.|.+- ...+++..+.|..|
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 888877665432 4445576554432 368999999999999999999753 22334444443322
Q ss_pred ccCeEEEEEcCCC---------CEEEEE-eCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC--------e----E
Q 016187 236 TEGLTCLTISADS---------TLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP--------W----A 293 (394)
Q Consensus 236 ~~~i~~~~~~~~~---------~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~--------~----l 293 (394)
. .+..+ +.... .+++++ ..+..+++|.....+++ +..-.+.|..|+ -+++. | +
T Consensus 285 p-~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 285 P-RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred C-ceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHH
Confidence 1 12222 33221 133443 34567888987766665 222223444444 33222 1 3
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
++.+.+++|++|--+
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 445667888888543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.4 Score=39.14 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=120.0
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEE--EecC---CCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCT--LEGP---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~--~~~~---~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
-..++..|.|..+..-+++|. .+.| +.... |+.=.. .... .-....+.|..+ ..+++| ..+. .+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEecC
Confidence 345789999985555566554 4543 33333 321111 1111 123566777543 334443 4443 333333
Q ss_pred ccceeeeec---ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 180 RAAYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 180 ~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
.++.-..+. .-......+....++..++ ++..|.|..= ...|+....+... ....+..+..+++|+++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~--~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSE--TSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S------EEEEEE-TTS-EEEEETT
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccC--CcceeEeEEECCCCcEEEEECc
Confidence 333211111 1112222333333333333 3344543221 2234444443221 2356788888999999999877
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----Ccceec-cCCCCEEEEEEeCC
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-----LPRSTC-DHEDGVTCLMWLGT 330 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~-~~~~~v~~~~~~~~ 330 (394)
...+.-|+.-...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+.... ...... .....+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 7777788864322121222245789999999998765544 7888887662111 000111 12234788999988
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEee---cccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFS---GHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
....++|+ .|.+.+ ....|+.-+.-. .-..-...+.|.++.+- ...+.+|.+.-|
T Consensus 244 ~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g-f~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKG-FVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEE-EEE-STTEEEEE
T ss_pred CCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEcCCCce-EEECCCcEEEEe
Confidence 77777665 443333 334444433332 23445778888765444 446778877655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.64 Score=45.44 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=71.5
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEEC-------
Q 016187 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWL--GTSKYVVTGCVDGKVRVWDS------- 348 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iwd~------- 348 (394)
.+.-+.-+.-++..+..+...++.|||.+........ ...+.|..+.|. |+++.+++-+....|.++.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3444444555555555555667999999876543332 346789999986 78899999999999999842
Q ss_pred --CCCeEEEEe--eccc-CceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 349 --LSGDCVRTF--SGHR-DAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 349 --~~~~~~~~~--~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.+...++.+ ..|+ .+|.+..|.++|..++.+|. .+.|++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 123344443 3444 57899999999987765543 355554
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.5 Score=41.86 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=139.2
Q ss_pred ccCEEEEEEcCCC------CEEEEEeCCCcEEEEe-CCCCceEEEEec----CCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 107 KDSVSSLAFSMDG------QLLASGGLDGLVQIWD-PSSGNLKCTLEG----PGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 107 ~~~V~~v~~s~~g------~~l~t~s~d~~i~vwd-~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
...|.|+.++|-| ++++.|..+..+.+-- .......+.... -...|-...+-.+.++|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4679999999753 2688888777666543 233333322211 1234555566667889999999999987
Q ss_pred EeCC--cccee--eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEE-EEc-CCC
Q 016187 176 WNAD--RAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCL-TIS-ADS 248 (394)
Q Consensus 176 w~~~--~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~-~~~-~~~ 248 (394)
+.+. ++..- +...-...++.--.|+..++.-+-+..|+-.-+|--+ ++.... +. -..+..+ .++ +..
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls-----~kev~~~c~f~s~a~ 683 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLS-----LKEVNHMCPFNSDAY 683 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccc-----hHHhhhhcccccccC
Confidence 7654 33221 1111223455545676655554445556655566433 222111 10 0001111 111 111
Q ss_pred -CEEEEEeCCCcEEEEECCCCc--EEEEeccCCCCEEEEEECCCCCeEEEEeCC--------------CcEEEEeCCCCC
Q 016187 249 -TLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRSSPWAATGSMD--------------QKLIIWDLQHSL 311 (394)
Q Consensus 249 -~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~ 311 (394)
..++++ ..+.+++.-+..-+ .++++. -......+++.+....+++.+.- ..++++|-.+..
T Consensus 684 ~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 223333 34556665544322 223332 23445556666644444443321 125555544332
Q ss_pred cceec--cCCC---CEEEEEEeCC-CCEEEEEe----------CCCeEEEEECCCCeEEEEeecc--cCceeEEEEccCC
Q 016187 312 PRSTC--DHED---GVTCLMWLGT-SKYVVTGC----------VDGKVRVWDSLSGDCVRTFSGH--RDAIQAISVSAHQ 373 (394)
Q Consensus 312 ~~~~~--~~~~---~v~~~~~~~~-~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~ 373 (394)
..... .... .+.++.|..+ +.+++.|. ..|+|.+|....++.++....+ .+.+.++.. .+|
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fng 840 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNG 840 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCC
Confidence 21111 1111 2344457666 67777775 2578888876664444443322 345555532 466
Q ss_pred CEEEEEeCCCcEEEEeccCC
Q 016187 374 DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 374 ~~l~s~s~dg~i~iw~~~~~ 393 (394)
+++ ++....||+|++..-
T Consensus 841 kll--A~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 841 KLL--AGINQSVRLYEWTTE 858 (1096)
T ss_pred eEE--EecCcEEEEEEcccc
Confidence 776 466778999987653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.8 Score=37.98 Aligned_cols=217 Identities=14% Similarity=0.179 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCC-------ccceeeeecc-----cCcCeEEEEECCCCC------------eEE
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNAD-------RAAYLNMFSG-----HGSSVTCGDFTPDGK------------TIC 207 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~~------------~l~ 207 (394)
-+.++++|.+.+.++....+...+||.. ..+++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3568999999888888888999999986 1122233331 123566666664322 367
Q ss_pred EEeCCCcEEEEcCCCCce-----EEEEcCCCCcccCe-EEEEEcC--CCCE-EEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 208 TGSDDATLRVWNPKSGEN-----IHVIRGHPYHTEGL-TCLTISA--DSTL-ALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~i-~~~~~~~--~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.++.||+|.-|....+.. ...+... ....+ ..+++.. .+.+ .++--..++|.++|-.-.++. .-....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 788999999998644332 1112111 01112 2344443 2344 444457889999985433221 000011
Q ss_pred CC----------EEEE---------EECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeC------CC
Q 016187 279 DS----------IECI---------GFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLG------TS 331 (394)
Q Consensus 279 ~~----------i~~v---------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~------~~ 331 (394)
++ |..+ .-.++...=+.+.--|.|-+||+.....+... +.-...+.++..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 11 1110 01111111122233467888888766544331 2223344555543 35
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeeccc------CceeEEEEcc
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHR------DAIQAISVSA 371 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~~ 371 (394)
.+|+-=-.||+|..||..+++.+..+..-. ..++.|+|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566665679999999999999888876432 3478999975
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.89 Score=41.89 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE----
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---- 142 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~---- 142 (394)
+.+-|...+..++|+.++.-+-.+-.....+..-.+ ...+++|.++.||+|.+.||.--.+.+|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 444555555667777654333322222222322222 234669999999999999999999999999987433221
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
.+.+.....|....|..+.. ++..+. ..+.+|.... ...++..+.|...|....|.++.+.++.+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 22233445677888887633 333333 3355554432 23355566788888888899887765433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.3 Score=38.59 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=44.2
Q ss_pred cCCCCEEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeEEE---E-eecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 317 DHEDGVTCLMWLG-------TSKYVVTGCVDGKVRVWDSLSGDCVR---T-FSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 317 ~~~~~v~~~~~~~-------~~~~l~sg~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
.+...+..+.|.. .+.++++.-..+.|....+.+...+. . +......+..|++.|||.++++-..+|.|
T Consensus 250 ~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 250 PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 3445566666653 34466666556788888776553332 2 23455589999999999999988888876
Q ss_pred E
Q 016187 386 R 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.3 Score=39.23 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=73.9
Q ss_pred CEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--EEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 109 SVSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s-----------~d~-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456789999998877643 223 677776443 332 22333333345778898888 444 444433
Q ss_pred EEEEeCCcc-----c---eeeeecc----cCcCeEEEEECCCCCeEEEEeCC-------------------CcEEEEcCC
Q 016187 173 VWMWNADRA-----A---YLNMFSG----HGSSVTCGDFTPDGKTICTGSDD-------------------ATLRVWNPK 221 (394)
Q Consensus 173 i~iw~~~~~-----~---~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~d-------------------g~i~vwd~~ 221 (394)
.++.+.... + .+..+.. +......++|.|||.+.++-+.. |.|.-+++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 333344211 1 1122222 12335678999999876654421 334444444
Q ss_pred CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
+++ +..+.. .......++|++++.++++-.
T Consensus 173 g~~-~e~~a~---G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH---GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec---CcCCCccceECCCCCEEEEcc
Confidence 332 222211 112245678888888776544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.8 Score=39.94 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 016187 238 GLTCLTISADSTLALSGS-----------KDG-SVHMVNITT--GKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~-----------~dg-~i~i~d~~~--~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
....+++.++|+++++-. ..+ .|.+++-.. |+. ...+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456788999999877753 223 677776543 332 22332233456788898888 444 344433
Q ss_pred EEEEeCCCC-----Cccee---cc-----CCCCEEEEEEeCCCCEEEEEeC-------------------CCeEEEEECC
Q 016187 302 LIIWDLQHS-----LPRST---CD-----HEDGVTCLMWLGTSKYVVTGCV-------------------DGKVRVWDSL 349 (394)
Q Consensus 302 i~iwd~~~~-----~~~~~---~~-----~~~~v~~~~~~~~~~~l~sg~~-------------------dg~i~iwd~~ 349 (394)
.++.|.... ..... .. +......+.|.|++.+.++-+. .|.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334344221 11111 11 1234677899999876554331 1456666665
Q ss_pred CCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 350 SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 350 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+++....-.++.. .+.++|+++++++++-..+
T Consensus 173 g~~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHGFQN-PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecCcCC-CccceECCCCCEEEEccCC
Confidence 5544322245443 4689999999988765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.63 Score=47.62 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCcE-----EEEeccC------CCCEEEEEECCCCCe-EEEEeCCCcEE
Q 016187 238 GLTCLTISADSTLALSG--SKDGSVHMVNITTGKV-----VSSLVSH------TDSIECIGFSRSSPW-AATGSMDQKLI 303 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g--~~dg~i~i~d~~~~~~-----~~~~~~h------~~~i~~v~~~~~~~~-l~s~s~dg~i~ 303 (394)
.+..+...+|++..++. +.+-.|..||+++-.. ..-+..| .....++.|.|.-+. .|....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35556667776655443 3444788999875321 1111112 223456778877553 55667788888
Q ss_pred EEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----ccCceeEEEEccCCCEEEE
Q 016187 304 IWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG----HRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 304 iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s 378 (394)
+..+...... .........+|++|+|.|+.++.|-..|++.-|-- +.+..+++.+ ....|.+|.|-....+++.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8766432221 12244567899999999999999999999999853 3444444332 2477999999776666665
Q ss_pred Ee
Q 016187 379 VS 380 (394)
Q Consensus 379 ~s 380 (394)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.6 Score=40.94 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.|..+..++.|..++-+|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57888899999999999999977664
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.86 E-value=1 Score=45.22 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=20.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
-.|..|.++|+|++||..|..+...+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 35889999999999998887664433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.8 Score=44.01 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=69.4
Q ss_pred CCcEEEEecCC--CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEecC
Q 016187 76 DATLVATGGGD--DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 76 ~~~~lasg~~d--~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d~---~i~vwd~~~~~~~~~~~~~ 148 (394)
++.+.+.||.+ ..+..|+..+.++... +.........+ .-+|+..+.||.++ .+..||+.+.++...-..+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45566667753 3567788777666442 22111111122 23677778887653 4778998877664321111
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCC-----CcEEEEcCC
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPK 221 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~ 221 (394)
.......+-.-++++.+.|+ ...+||..+.+-.. .+......... + .-+++..+.|+.+ .++..||+.
T Consensus 396 ~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~-~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPEL-I-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEE-E-EECCEEEEECCcCCCcccceEEEEECC
Confidence 11111111223566666664 46778876544221 11111111111 1 2256677777654 245566655
Q ss_pred CC
Q 016187 222 SG 223 (394)
Q Consensus 222 ~~ 223 (394)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 43
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.1 Score=37.82 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEE-EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWM-WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~i-w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
..+.+..+.+.|++.+++++. .|.+.. ++-....-.....+-...++++.+.++++.++.+ ..|.+++=....+...
T Consensus 171 ~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred CcceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 345788899999887665554 454442 2222111222222334577888999998876665 4576653233444443
Q ss_pred EEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec---cCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 227 HVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV---SHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 227 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
...... ......+..+.+.|++..+++| .+|.+. .....++.-.... .-....+.+.|..+...+++ +..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceE
Confidence 322211 0112357778888887766555 556554 3344444333322 12235677777766666554 456777
Q ss_pred EEEe
Q 016187 303 IIWD 306 (394)
Q Consensus 303 ~iwd 306 (394)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.6 Score=36.65 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCEEEEec---CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc-CCCCceE
Q 016187 151 GVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN-PKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s---~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~ 226 (394)
.+...++++++..++... ....++++....... ....+ ..++.-.|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 577889999998776655 334566665443322 11222 2556668999977666666666677773 3333321
Q ss_pred -EEEcCCCCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--cE----EEEeccCCCCEEEEEECCCCCeE
Q 016187 227 -HVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNIT---TG--KV----VSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 227 -~~~~~~~~~~~~i~~~~~~~~~~~l~~g~---~dg~i~i~d~~---~~--~~----~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
..+.... ....|+.+.++|||..++.-. .++.|.+--+. .+ .. +.........+..+.|.++..++
T Consensus 102 ~~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1122111 111799999999998776544 35777766442 22 11 11122234678899999999887
Q ss_pred EEEeCCC
Q 016187 294 ATGSMDQ 300 (394)
Q Consensus 294 ~s~s~dg 300 (394)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.7 Score=40.40 Aligned_cols=193 Identities=11% Similarity=0.176 Sum_probs=104.5
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc--------CEEEEEEc----------------CCCCEEEEEeCCCcEEEEe
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFS----------------MDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~--------~V~~v~~s----------------~~g~~l~t~s~d~~i~vwd 135 (394)
+..++.++.+.-.|..+++.+-.+.-... ..+.+++. ..+.+++.++.|+.|.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 33455667777777777765544321110 11223332 1345788888999999999
Q ss_pred CCCCceEEEEecCCCCEE-------------EEEEcC--CCCEEEEecC----------CCeEEEEeCCccceeeeecc-
Q 016187 136 PSSGNLKCTLEGPGGGVE-------------WVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFSG- 189 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~~~- 189 (394)
..+|+....+.. .+.+. .+.-.| .+..++.|+. +|.|+-+|..+++.+-.+..
T Consensus 277 A~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 277 ADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred CCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 999998765432 11111 011112 1335555542 68899999988876543321
Q ss_pred ---------------cC-cCe-EEEEECCCCCeEEEEe------------------CCCcEEEEcCCCCceEEEEcCCC-
Q 016187 190 ---------------HG-SSV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGHP- 233 (394)
Q Consensus 190 ---------------h~-~~v-~~~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~~- 233 (394)
+. ..+ ...++.+...+++.+. ..++|.-.|.++|+..-.++..+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 00 011 1234444444443322 23456666777777654443211
Q ss_pred -Ccc----cCeEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCcEEEE
Q 016187 234 -YHT----EGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 234 -~~~----~~i~~~~~~~-~~~---~l~~g~~dg~i~i~d~~~~~~~~~ 273 (394)
... ....-+.+.. +++ .++.++.+|.+.++|.++|+.+..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 000 1122223332 453 788999999999999999886654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.53 E-value=5.4 Score=39.40 Aligned_cols=195 Identities=12% Similarity=0.194 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--E--ecCCCCEEEEEEcCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--L--EGPGGGVEWVSWHPRG 161 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~ 161 (394)
--.++|+++ +|..+..+......+-.+.|+.+.. |+....+|+++||++.. +.... + ......|.-+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 345777776 4454444433334777899998765 55677899999999753 22221 1 1122335555555566
Q ss_pred CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECCCCC---eEEEEe-CCCcEEEEcCCCCc-eEEEEcCCC
Q 016187 162 HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGK---TICTGS-DDATLRVWNPKSGE-NIHVIRGHP 233 (394)
Q Consensus 162 ~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~---~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~ 233 (394)
-.+++ .+|.+.+-+-.....+..+ ++..-+.+|-...+++. .++-.. ..+ ..+.-..... ..+.+.
T Consensus 140 Vavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~--- 213 (829)
T KOG2280|consen 140 VAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS--- 213 (829)
T ss_pred eEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC---
Confidence 44444 3444444332222112221 11122222322222221 111110 000 0011111110 011111
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEEECCCC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIGFSRSS 290 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~ 290 (394)
.....+..+++||+.++++--...|.|.+.+....+++..+. .|. +...++|..+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 112457778999999999999999999999887766665554 222 22255555443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.4 Score=41.65 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=72.0
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEEC--CCCCeEEEEeCCCcEEEEcCCC-----
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFT--PDGKTICTGSDDATLRVWNPKS----- 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~----- 222 (394)
...-+.-+.-++..++-+....+.|||...+.....-. .....|.+++|. |+++.+++.+....|.++--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555655565566789999998776433221 346788889885 6899999999999999985321
Q ss_pred C----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 223 G----ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 223 ~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
. ..+..+.-......+|....|-++|.++++++ ..+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 12223222122234577788999988777653 46777763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.36 E-value=4.4 Score=37.65 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=92.2
Q ss_pred CcEEEEecCCCeEEEEEcCC----CeeeEeecC---cc----cCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCC
Q 016187 77 ATLVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSG 139 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~----~~~~~~~~~---h~----~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~ 139 (394)
.+|++-|=..++|+|.|+.+ .++...++. +. ..-..+-.-|+|+.++|+-.| |-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 45566666899999999874 334444432 11 112233334789888877432 46778888877
Q ss_pred ceEEEEecCC---CCEEEEEEcCCCCEEEEec--------------------CCCeEEEEeCCccceeeeecccC--cCe
Q 016187 140 NLKCTLEGPG---GGVEWVSWHPRGHIVLAGS--------------------EDSTVWMWNADRAAYLNMFSGHG--SSV 194 (394)
Q Consensus 140 ~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s--------------------~d~~i~iw~~~~~~~~~~~~~h~--~~v 194 (394)
+.+...+... .--...-|+|..+.+++.. ...++.+||+.+.+.++.+.--. ..+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7776665432 2334577888888877743 23579999999999888775432 234
Q ss_pred EEEEEC--CCCCe-EEEEeCCCcEEEE-cCCCCc----eEEEEcCCC-----Cc---------ccCeEEEEEcCCCCEEE
Q 016187 195 TCGDFT--PDGKT-ICTGSDDATLRVW-NPKSGE----NIHVIRGHP-----YH---------TEGLTCLTISADSTLAL 252 (394)
Q Consensus 195 ~~~~~~--~~~~~-l~s~~~dg~i~vw-d~~~~~----~~~~~~~~~-----~~---------~~~i~~~~~~~~~~~l~ 252 (394)
..+.|. |+..+ ++.+....+|-.| ....++ .+..+...+ .. ..-++-+.+|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 566665 44444 3334444555444 323332 111121100 00 12367889999999887
Q ss_pred EEe-CCCcEEEEECCCC
Q 016187 253 SGS-KDGSVHMVNITTG 268 (394)
Q Consensus 253 ~g~-~dg~i~i~d~~~~ 268 (394)
.+. ..|.|+.||+...
T Consensus 328 vs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEETTTTEEEEEE-SST
T ss_pred EEcccCCcEEEEecCCC
Confidence 665 6899999999753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=2 Score=40.26 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=88.3
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC--------CEEEEEeCCCcEEEEeCC-CCceEEEEecCC
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--------QLLASGGLDGLVQIWDPS-SGNLKCTLEGPG 149 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g--------~~l~t~s~d~~i~vwd~~-~~~~~~~~~~~~ 149 (394)
++..|+.-..++--|++-|+.+....-|.+- -+.|.|+. +.|+ |-.+..|.--|+. .|..+. .....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~-v~esK 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK-VVESK 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee-eeeeh
Confidence 3445666666666778888888888877665 57788842 3444 4445555555654 232221 11122
Q ss_pred CCEEEEEEcC----CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 150 GGVEWVSWHP----RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 150 ~~v~~~~~~~----~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
...+.-.|+. .+-+++++|..|-|++||.-...-...+++-+..|..+..+.+|+++++.+. ..+-+-|++
T Consensus 558 dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2222222332 3458999999999999997655555667788889999999999998876654 456666654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.8 Score=39.31 Aligned_cols=147 Identities=15% Similarity=0.231 Sum_probs=81.0
Q ss_pred cEEEEEEcCCCCcEEEEec--CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC----CEEEEEeCCCcEEEEeCC--
Q 016187 66 EVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG----QLLASGGLDGLVQIWDPS-- 137 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~--~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g----~~l~t~s~d~~i~vwd~~-- 137 (394)
+|..++|.. +.+++.|.= ..|.+++= ... .-|.-+-|..+.|+|-+ ..|+...-...|.||-+.
T Consensus 21 PvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEecC-CCEEEEEeeeeeCCccccC---Ccc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 677888863 556666531 11111110 111 22334458999999853 234445556789999764
Q ss_pred ---CCceEEE----EecCCC-CEEEEEEcCCCCEEEEecCCCeEEEEeCC--ccceeeeecccCcCeEEEEECCCCCeEE
Q 016187 138 ---SGNLKCT----LEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 138 ---~~~~~~~----~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
..+++.. +..+-. --..+-|||...+|+.-.....-.++++. +......+ ...+-|.|..|.+||++|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 2333322 211100 01236799998877655444433444543 22333334 3456789999999999876
Q ss_pred EEe-CCCcEEEEcCC
Q 016187 208 TGS-DDATLRVWNPK 221 (394)
Q Consensus 208 s~~-~dg~i~vwd~~ 221 (394)
.+- ..=.-.+||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 553 33345789843
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.3 Score=39.67 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=85.0
Q ss_pred ccCEEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC----CCEEEEecCCCeEEEEeCC
Q 016187 107 KDSVSSLAFSMDGQL-LASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~-l~t~s--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~s~d~~i~iw~~~ 179 (394)
-.+|..++|. ||+. ++|.- .+|.+++=| . ..-+..+.|..++|.|- ...|++.-....|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---S----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---c----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899996 4554 44442 223322211 1 12334456888999985 3467777888999999874
Q ss_pred -----ccceeeeeccc---CcC--eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 180 -----RAAYLNMFSGH---GSS--VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 180 -----~~~~~~~~~~h---~~~--v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
+.+.+..-..+ .-+ ...+.|+|....|+.-.....-.+++++.........- ...+.|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC
Confidence 22222211111 111 13567999888776554444334566654432222111 1345689999999998
Q ss_pred EEEEEeC-CCcEEEEECC
Q 016187 250 LALSGSK-DGSVHMVNIT 266 (394)
Q Consensus 250 ~l~~g~~-dg~i~i~d~~ 266 (394)
.++++-. .=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 8776643 3345678743
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.1 Score=34.36 Aligned_cols=173 Identities=21% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCe
Q 016187 118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194 (394)
Q Consensus 118 ~g~~l~t~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v 194 (394)
+|.++.+.+. ...|++||+.+|+....-.-....+..=-...-+. +..-.-.++.-..+|..+-+.+..+...+. =
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-G 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-G 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-c
Confidence 4556666553 35799999999987654332211111000011122 223334677778888877766655443222 1
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE----cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
. ....|++.|+.+....+++.-|+++-.....+ .+.+ ...++-+-+- +|.+++--=.+..|...+..+|++
T Consensus 134 W--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 134 W--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred e--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--cccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 2 23456777887777778888887764433222 1111 1112222221 333333323344455556666665
Q ss_pred EEEec------------cCCCCEEEEEECCCC-CeEEEE
Q 016187 271 VSSLV------------SHTDSIECIGFSRSS-PWAATG 296 (394)
Q Consensus 271 ~~~~~------------~h~~~i~~v~~~~~~-~~l~s~ 296 (394)
+.-+. .|.+-.+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 54332 244567788888877 555655
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.36 Score=28.56 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=25.8
Q ss_pred cCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 016187 108 DSVSSLAFSMDG---QLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 108 ~~V~~v~~s~~g---~~l~t~s~d~~i~vwd~~~ 138 (394)
++|+++.|||+. .+|+-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999885
|
It contains a characteristic DLL sequence motif. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=4.3 Score=35.45 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=108.1
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
.|-...+.++.|+|+.+.|++......-.||=...|+.+..+...-.+ ..-.+.+..++.++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 444556899999999999999888888888887888888776543222 233456667788888888889998887765
Q ss_pred CcEEEE-------ec--cC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---c-eeccCC-------CCEEEEE
Q 016187 268 GKVVSS-------LV--SH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP---R-STCDHE-------DGVTCLM 326 (394)
Q Consensus 268 ~~~~~~-------~~--~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~-~~~~~~-------~~v~~~~ 326 (394)
...+.. +. .+ ....+.++|+|....|..+=.-.-+.||.+..... . ....+. ..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11 12 45678899999988887777777777776542210 0 001111 2356677
Q ss_pred EeCC-CCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 327 WLGT-SKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 327 ~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
|.+. +..|+-+..++.+.-.|. .|..+..+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~l 270 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDL-SGEVIELL 270 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEec-CCCeeeeE
Confidence 7754 445555666666666664 35444443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.9 Score=40.41 Aligned_cols=143 Identities=16% Similarity=0.273 Sum_probs=88.7
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-------eEEEEeCCCcEEEEcCCCCc-eEEEEcCCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-------TICTGSDDATLRVWNPKSGE-NIHVIRGHPY 234 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~ 234 (394)
++..|.....++-.|++.++.+..+..|... -+.|.|..+ .-+.|-++..|--.|++... .+.......+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 3455666677888889999998888888765 356777532 23445556667666776432 2222221111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
....-.+....-.+.++++|+..|-|++||--.-+....+.+....|-.+..+.+|.++++.+ ...+.+-|+.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111111111223467899999999999999644333344556677888899999999876544 3466666653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.76 E-value=7 Score=38.65 Aligned_cols=184 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE-cCCCCcccCeEEEEEcCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 247 (394)
.--.|+|++......-+..-.|. .+..+.|+.+. .|+....+|++++|++.... +... .+.+.....|.-+.+..+
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred cceeEEEEeccccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecC
Confidence 34557788776544333344454 66678888664 56677899999999975322 2110 111222223444444445
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecc---CCCCEEEEEE-CCCCC--eEEEEe-CCCcEEEEeCC--CCCcceeccC
Q 016187 248 STLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGF-SRSSP--WAATGS-MDQKLIIWDLQ--HSLPRSTCDH 318 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~v~~-~~~~~--~l~s~s-~dg~i~iwd~~--~~~~~~~~~~ 318 (394)
|-.+++. +|.+.+.+-.....+.++.. ...+-.|-.. .|... .++-.. ..+ ..++-.. ..........
T Consensus 139 GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 GVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP 215 (829)
T ss_pred ceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC
Confidence 5444433 44444433222111222211 1111111111 11111 111100 000 0011111 1111111112
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
...+..+..+|+.++|+--...|.|.+-+....+++..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3456778889999999999999999998887777666554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.2 Score=35.18 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=105.8
Q ss_pred EEEEECCCCCeEEEEeCCC--cEEEEcCCCCceEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 195 TCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
..+.|..+|.++-+.+.-| .|+.+|+.+++........ ....++++-+ +++++...=.++...+||..+-+.+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccccceEE
Confidence 4667767788877777766 6999999999876554422 1223334332 3445555567889999999999888
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---CC---CCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---HE---DGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
.++... ..=..++ .++..|+......+|.++|..+........ .. ..++-+.|. +|...|=-=....|..
T Consensus 124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 887543 2333343 456667777777889999987653332211 11 235556665 4444443444566777
Q ss_pred EECCCCeEEEEeec------------c---cCceeEEEEccCCCEE-EEE
Q 016187 346 WDSLSGDCVRTFSG------------H---RDAIQAISVSAHQDFL-VSV 379 (394)
Q Consensus 346 wd~~~~~~~~~~~~------------h---~~~v~~l~~~~~~~~l-~s~ 379 (394)
.|..+|+.+..+.- + .+..+.+|+.|..+.| +||
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 89999998876531 1 2457999998876554 454
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.61 E-value=7.1 Score=37.46 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=69.5
Q ss_pred CcEEEEecCC-------CeEEEEEcCCCeeeEeec-C---cccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 016187 77 ATLVATGGGD-------DKGFFWRINQGDWASEIQ-G---HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN 140 (394)
Q Consensus 77 ~~~lasg~~d-------~~v~~w~~~~~~~~~~~~-~---h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~ 140 (394)
..+++-||.+ ..+..||+.+.++...-. + ........+..-++.+++.|+.+ ..+.++|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 3455556643 236677887777653211 1 00001111122345566666654 357788988776
Q ss_pred eEEEEec---CCCCEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeeee-----cccCcCeEEEEECCCCCeEE
Q 016187 141 LKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 141 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~ 207 (394)
....-.. +.......+..-++++++.|+.++ .+..||+.+.+-...- .........+. -+++..+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyv 333 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWV 333 (470)
T ss_pred EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEE
Confidence 5432111 111111111223456667776543 4667777654322110 00111111112 2566667
Q ss_pred EEeCC----CcEEEEcCCCCc
Q 016187 208 TGSDD----ATLRVWNPKSGE 224 (394)
Q Consensus 208 s~~~d----g~i~vwd~~~~~ 224 (394)
.++.+ ..+.+||+.+.+
T Consensus 334 iGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EECCCCCccCceEEEECCCCE
Confidence 76655 458889987764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.6 Score=34.92 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE---
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--- 143 (394)
-+.|+-.|+ +.+-.++...+.+=--|..+++....--+....-..|...|||..-++-+.. .|.-.|.++.+...
T Consensus 64 p~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 64 PFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 356677775 4455566666666666777777766555555556678888998876655544 45556766665432
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCC---------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSED---------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d---------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
..+...+..+...|.+.|++.+++... +.|++|... .......+...|+|..-++.-.+..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccc
Confidence 123344567788899999988887631 233344332 1223345677899998888777788
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeccCCCCEEEEEECCCCCeE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h~~~i~~v~~~~~~~~l 293 (394)
|-..|..++.. ..+..........+.+..+|.+...++-...+.+.-+|.....-. -.+.+....-.++.....+..-
T Consensus 212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence 88888877632 223222111234555667788888888777888888887554311 1233333334455555544433
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
++--..|.|.-+|..
T Consensus 291 ~sea~agai~rfdpe 305 (353)
T COG4257 291 LSEADAGAIGRFDPE 305 (353)
T ss_pred eeccccCceeecCcc
Confidence 333334445445543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.097 Score=51.79 Aligned_cols=136 Identities=10% Similarity=0.218 Sum_probs=78.2
Q ss_pred CcEEEEECC--CCcEEEEec-----cCCCCEEEEEEC---CCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEE--
Q 016187 258 GSVHMVNIT--TGKVVSSLV-----SHTDSIECIGFS---RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-- 325 (394)
Q Consensus 258 g~i~i~d~~--~~~~~~~~~-----~h~~~i~~v~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-- 325 (394)
|.+.+|++. .|++...+. .....+.-|.|. ++..++..+-.++.+++..+.+........|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 456667653 343322221 122233344444 35567777888898888766544333333455443322
Q ss_pred ---------EEeCCCCEEEEEeCCCeEEEEEC-----CCCeEEEEeeccc-CceeEEEEccCC---------CEEEEEe-
Q 016187 326 ---------MWLGTSKYVVTGCVDGKVRVWDS-----LSGDCVRTFSGHR-DAIQAISVSAHQ---------DFLVSVS- 380 (394)
Q Consensus 326 ---------~~~~~~~~l~sg~~dg~i~iwd~-----~~~~~~~~~~~h~-~~v~~l~~~~~~---------~~l~s~s- 380 (394)
..+|||..++.++.||.++.|-+ ..-+|+...+.|. .+-.|..|+.+. .++++++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 25799999999999999888854 3445666677776 333333344322 2455554
Q ss_pred CCCcEEEEeccCC
Q 016187 381 LDGTARVFEIADF 393 (394)
Q Consensus 381 ~dg~i~iw~~~~~ 393 (394)
..+.+++|...-|
T Consensus 313 ~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 313 VNREEKFWAEAPW 325 (1283)
T ss_pred CCcceeEeeccch
Confidence 4567999976544
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.45 E-value=6 Score=36.10 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CcEEEEecCC-------CeEEEEEcCCCeeeEeecC-c--cc---CEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 016187 77 ATLVATGGGD-------DKGFFWRINQGDWASEIQG-H--KD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPSS 138 (394)
Q Consensus 77 ~~~lasg~~d-------~~v~~w~~~~~~~~~~~~~-h--~~---~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~ 138 (394)
..+.+.||.+ ..+.++|+.+.++...-.. . .. ....+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455666653 3577888887776542211 0 10 1222222 45566667653 3577889887
Q ss_pred CceEEEEec-----CCCCEEEEEEcCCCCEEEEecCC-----------CeEEEEeCCccc
Q 016187 139 GNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAA 182 (394)
Q Consensus 139 ~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~s~d-----------~~i~iw~~~~~~ 182 (394)
.+....-.. +.......+...++++++.|+.+ ..+.+||..+.+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 665432110 11111112222345666777653 246778876543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=6.4 Score=35.83 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=126.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEE--e--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTL--E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
...+++|.|....+-+++|. ++. ||.... |+.-... . .....+..+.|.++ ..+++ +..+.|..- .+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666666664 443 333322 2211111 1 11234667777643 33443 344444332 1112
Q ss_pred ceeee------ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 182 AYLNM------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 182 ~~~~~------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
+.-.. +.++. ....++.+ +..++. +..|.|..= ...|+....+... ....+..+.+.|++.+++++.
T Consensus 119 ~tW~~~~~~~~~~~~~--~~i~~~~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~--~~g~~~~i~~~~~g~~v~~g~ 191 (334)
T PRK13684 119 KNWTRIPLSEKLPGSP--YLITALGP-GTAEMA-TNVGAIYRT-TDGGKNWEALVED--AAGVVRNLRRSPDGKYVAVSS 191 (334)
T ss_pred CCCeEccCCcCCCCCc--eEEEEECC-Ccceee-eccceEEEE-CCCCCCceeCcCC--CcceEEEEEECCCCeEEEEeC
Confidence 11111 11221 11122222 223333 333433211 1223443333221 134578888999887766554
Q ss_pred CCCcEEE-EECCCCcEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---cee--ccCCCCEEEEEEe
Q 016187 256 KDGSVHM-VNITTGKVVSSL-VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP---RST--CDHEDGVTCLMWL 328 (394)
Q Consensus 256 ~dg~i~i-~d~~~~~~~~~~-~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~--~~~~~~v~~~~~~ 328 (394)
.|.+.. ++ ..++.-..+ ..-...++++.+.++++.++.+ ..|.+++=....... ... ......+..+.+.
T Consensus 192 -~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 192 -RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR 268 (334)
T ss_pred -CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence 454432 22 122222222 2234678899999998876665 456654321211111 000 0112346778888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDCVRTF---SGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++..+++ +.+|.|.. ....|+.-... .+-......+.|..+++.++ ++..|.|..|+
T Consensus 269 ~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 87776554 45676553 33334333322 22233577788876666554 77788887765
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.18 E-value=5.6 Score=35.01 Aligned_cols=208 Identities=14% Similarity=0.204 Sum_probs=118.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcC-------CCeeeEeecC-----cccCEEEEEEcCCCC------------E
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L 121 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~-------~~~~~~~~~~-----h~~~V~~v~~s~~g~------------~ 121 (394)
.-+.|+++|.+ .+-++....+...+||.+ ...++.++.. -....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45899999965 455666778899999986 1223334442 234577777774322 3
Q ss_pred EEEEeCCCcEEEEeCCCCce-----EEEEec-CCCC-EEEEEEcCC--CCEE-EEecCCCeEEEEeCCccceee--ee--
Q 016187 122 LASGGLDGLVQIWDPSSGNL-----KCTLEG-PGGG-VEWVSWHPR--GHIV-LAGSEDSTVWMWNADRAAYLN--MF-- 187 (394)
Q Consensus 122 l~t~s~d~~i~vwd~~~~~~-----~~~~~~-~~~~-v~~~~~~~~--~~~l-~~~s~d~~i~iw~~~~~~~~~--~~-- 187 (394)
++.++.||+|.-|...-+.. ...+.. ..+. ...+++... +.+| ++=-..++|.++|-.-.+... .+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56788999999998543222 112221 1233 344555543 4444 444467889988754322110 00
Q ss_pred ---cc-----------cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC------C
Q 016187 188 ---SG-----------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------D 247 (394)
Q Consensus 188 ---~~-----------h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~------~ 247 (394)
.. ..-.|+...-.++++.=+.|..-|.|-++|+. ++.++.+... ..-.....++..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhCCCC
Confidence 00 00112222222333333444556789999974 5555555321 1222334455544 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 248 STLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
+.+|+.--.||+|..+|..+++.+..+..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecC
Confidence 67777777899999999999988877754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=12 Score=37.72 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=111.4
Q ss_pred cEEEEEEcCCCCcEEEEec----CCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 016187 66 EVYSVACSPTDATLVATGG----GDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIW 134 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~----~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vw 134 (394)
.+..+.++|++..+..+.. ...++++-++.+++.+. .+.+ .. ..++|++|++.|+-...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3566778996554443322 23346777887776432 2222 22 469999999876655432 367778
Q ss_pred eCCCC--ceEEEEecCCCCEEEEEE-cCCCCEEEEec---CCCeEEEEeCC--ccceeeeecccCcCeEEEEECCCCCeE
Q 016187 135 DPSSG--NLKCTLEGPGGGVEWVSW-HPRGHIVLAGS---EDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 135 d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s---~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
++.++ +....+........-..+ +.++++++..+ .++.+.+++.. .+.....+ .+...+..-..+..+.+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEYSLDHYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEEEEEeCCCEEE
Confidence 88887 334444444444432233 33666554433 34578888842 22211111 222222111112223332
Q ss_pred EEEeCC-C--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCCcEEEEec-cCCCC
Q 016187 207 CTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTGKVVSSLV-SHTDS 280 (394)
Q Consensus 207 ~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i--~d~~~~~~~~~~~-~h~~~ 280 (394)
+....+ . .|...++........+-.+. ....+..+.+. .+.++++...+|.-++ +++.++ .+..+. .....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 322221 2 23333443211122222210 12246666666 4456666666776554 454333 333332 22222
Q ss_pred EEEEEEC--CCCC-eEEEEe---CCCcEEEEeCCCC
Q 016187 281 IECIGFS--RSSP-WAATGS---MDQKLIIWDLQHS 310 (394)
Q Consensus 281 i~~v~~~--~~~~-~l~s~s---~dg~i~iwd~~~~ 310 (394)
+..+.++ +++. ++++.+ .-+.+..+|+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3333344 3333 443333 2356777777654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.7 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.555 Sum_probs=25.7
Q ss_pred cCeEEEEECCC-C--CeEEEEeCCCcEEEEcCCC
Q 016187 192 SSVTCGDFTPD-G--KTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 192 ~~v~~~~~~~~-~--~~l~s~~~dg~i~vwd~~~ 222 (394)
+.+.++.|+|. + .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 35789999984 3 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.7 Score=36.14 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceEEEEec----CCCCEEE
Q 016187 85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG----PGGGVEW 154 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~~----~~~~v~~ 154 (394)
....+.+||..+.++...-.+-.+.|++|.|..+.++++.|. ....+..||..+......-.+ -.++|..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 466788999999998887777778999999997767777664 345678899887765322221 2367777
Q ss_pred EEEcC
Q 016187 155 VSWHP 159 (394)
Q Consensus 155 ~~~~~ 159 (394)
+.+..
T Consensus 94 ~~~~~ 98 (281)
T PF12768_consen 94 LTFIS 98 (281)
T ss_pred EEeec
Confidence 76643
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.1 Score=39.93 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=56.1
Q ss_pred cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCC-CEEEEEEcCCC----------------C--EE
Q 016187 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRG----------------H--IV 164 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~----------------~--~l 164 (394)
......+.+++.+|.+++.|+...=|.|.++|+.++..+...++-.+ .+.++.-...+ . ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 33456689999999999998887789999999999877666655332 22222211110 1 23
Q ss_pred EEecCCCeEEEEeCCccceeeee
Q 016187 165 LAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+-+-.-|.|.+|.++.++.+..+
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEE
Confidence 44556788899998877765544
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=8.1 Score=33.80 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=107.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--- 182 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--- 182 (394)
.+-+..+.++. ++...+..+.-++|.|+.+......+.. ..... .-.|.-.|+++..+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy-aygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY-AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCce-EEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34456666764 5666677777899999887653222111 11111 23455568888888877777888876532
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
....+.........++.+ |++-..+..|+-+.+-|+........+. +.-....+.++..+++--+++.. +.-+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~y~vvy--~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRAYLVVY--DEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-EEecCCceEEEEecCCeeEEEEc--ccceEE
Confidence 222333333333445554 6777778889999999998765443332 21122367777777776665554 345667
Q ss_pred EECCCCcEEEEe--ccCCC--CEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 263 VNITTGKVVSSL--VSHTD--SIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 263 ~d~~~~~~~~~~--~~h~~--~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.|....+....+ ..... .++.+..+ +++......+.-+.+-|+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccC
Confidence 776554422211 11122 22223444 34444444455555556543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.6 Score=36.88 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=49.2
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEE-------ee-------cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRT-------FS-------GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+.+|++-+.+|.+++||+.+++++.. +. .....|..+.++.+|.-|++-+ +|....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 345788999999999999999999887542 22 2456788899998888887766 4778888754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.68 E-value=10 Score=34.46 Aligned_cols=229 Identities=13% Similarity=0.161 Sum_probs=112.2
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee---eEee----cCcccCEEEEEEcCC----CCEEEEEeCC-------
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDW---ASEI----QGHKDSVSSLAFSMD----GQLLASGGLD------- 128 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~---~~~~----~~h~~~V~~v~~s~~----g~~l~t~s~d------- 128 (394)
-++++|.|+ +.++++ -..++|++.+ ..+.. +..+ .........++|+|+ +.+.+..+..
T Consensus 4 P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999996 567765 4589999998 34443 2222 234567899999995 4433333321
Q ss_pred -CcEEEEeCCCC--c-----eE-EEEec---CCCCEEEEEEcCCCCEEEEecCCC-------------eEEEEeCCccc-
Q 016187 129 -GLVQIWDPSSG--N-----LK-CTLEG---PGGGVEWVSWHPRGHIVLAGSEDS-------------TVWMWNADRAA- 182 (394)
Q Consensus 129 -~~i~vwd~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~s~d~-------------~i~iw~~~~~~- 182 (394)
..|.-|....+ . .+ ..+.. ....-..+.|.|++.++++.+..+ .|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 1 11 11222 223456699999998766654433 22223322110
Q ss_pred -----------eeee-ecccCcCeEEEEECCC-CCeEEEE-eCCCcEEEEcCCCCce-----------------------
Q 016187 183 -----------YLNM-FSGHGSSVTCGDFTPD-GKTICTG-SDDATLRVWNPKSGEN----------------------- 225 (394)
Q Consensus 183 -----------~~~~-~~~h~~~v~~~~~~~~-~~~l~s~-~~dg~i~vwd~~~~~~----------------------- 225 (394)
.... -.|+.. ...++|.|. |++.++= +.+..=.|--+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0001 123333 346788887 5544321 2222222221222110
Q ss_pred ------EEEEcCCCCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCcEEE---Ee-ccCCCCEEEEEECC
Q 016187 226 ------IHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVS---SL-VSHTDSIECIGFSR 288 (394)
Q Consensus 226 ------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~g~~dg~i~i~d~~~~~~~~---~~-~~h~~~i~~v~~~~ 288 (394)
...+. +...++.+.+-. .+.++++.-..+.|....+..+..+. .+ ......+..+++.|
T Consensus 240 ~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 240 PGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 00000 112344454432 34566666667788888876553222 22 23344799999999
Q ss_pred CCCeEEEEeCCCcEE
Q 016187 289 SSPWAATGSMDQKLI 303 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~ 303 (394)
+|.+.++.+.+|+|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.60 E-value=8.4 Score=33.38 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=114.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
-..++-.|+|...+++...+.|--.|..+++....--+.......+..-|||..-++=+.. -|.-.|.++.+.. .+..
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~l 141 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPL 141 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eeec
Confidence 3456778888888888888888888888888776666666667778888988765554433 5666677665432 2211
Q ss_pred C-CCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 016187 232 H-PYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 232 ~-~~~~~~i~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
. ......+....|.+.|++.+++... +.|++|+...| ...+.|+..|++..-++.-.++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------CCCcceEECCCCcEEEEeccccc
Confidence 1 1123457788999999999988632 23344433222 23456777888887666666666
Q ss_pred EEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 302 LIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 302 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|...|.......... ........+.-.|.++.-++-...+.+.-+|-.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence 766665443221111 111122333345666666666666777766643
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.03 E-value=12 Score=34.12 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCCEEEEEeCC-----------CcEEEEeCCCCceEEEEecCCCCEEE-EEE-cCCCCEEEEecCC
Q 016187 117 MDGQLLASGGLD-----------GLVQIWDPSSGNLKCTLEGPGGGVEW-VSW-HPRGHIVLAGSED 170 (394)
Q Consensus 117 ~~g~~l~t~s~d-----------~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~l~~~s~d 170 (394)
-++++.+.|+.+ ..+..||+.+.+.............. ... ..++++++.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 356777777753 24677888776654321111111111 112 2467777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.82 E-value=16 Score=36.64 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCEEEEecCCCeEEEEeCCc-------c----c---------eeeeecccCcCeEEEEEC--CCCCeEEEEeCCCcEEEE
Q 016187 161 GHIVLAGSEDSTVWMWNADR-------A----A---------YLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218 (394)
Q Consensus 161 ~~~l~~~s~d~~i~iw~~~~-------~----~---------~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~vw 218 (394)
..+|+.|..||.|.+|.+++ . . +... ..-...+++++++ ...++||.++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 34789999999999997532 0 0 0011 1124577889998 778888988888889888
Q ss_pred cCCCCc-eEEEEcCCCCcccCeEEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 016187 219 NPKSGE-NIHVIRGHPYHTEGLTCLTISADS-----T-LALSGSKDGSVHMVNI 265 (394)
Q Consensus 219 d~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-----~-~l~~g~~dg~i~i~d~ 265 (394)
-..... .......+ .+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 654321 11111111 134457778776543 2 6777888999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.61 E-value=17 Score=36.78 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=41.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CcE--E-EEe--------ccCCCCEEEEEECCC---CCeE
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITT----------GKV--V-SSL--------VSHTDSIECIGFSRS---SPWA 293 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~--~-~~~--------~~h~~~i~~v~~~~~---~~~l 293 (394)
.|..+.++|+|++++..|..| |.|..+.. |+. . +++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588899999999998888755 44444421 110 0 111 112335666666665 3566
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
+.-..|+++++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 666667777777664
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.6 Score=34.19 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=24.6
Q ss_pred cCeEEEEECCCC------CeEEEEeCCCcEEEEcCCC
Q 016187 192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 192 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~ 222 (394)
..+..++|||.| -.|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 2578889999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=39.59 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCc
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~ 180 (394)
...++|.|.-++++.++..|.+.++-...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccc
Confidence 34578999999999999999999986543
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.8 Score=39.90 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=94.6
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-ee-ecccC----cCeE-EEEECCCCCeEEEEeCCCcEEE
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NM-FSGHG----SSVT-CGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-~~-~~~h~----~~v~-~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+......+..+-..|+++.+..-+. .++.++++.+.... +. ..... ..|+ .+..-..|.-++.++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4455667788889999997766555 67788877543321 11 11101 1111 1112235667888899999977
Q ss_pred E-cCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 218 W-NPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 218 w-d~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
| |++.+.. ++.++........+..+.-..+.+-+++-+..|++..+...+.+.+-.-. --+.+.-+++||.+.+++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence 7 5544322 22222212222223333322334566777788888888766555442221 123566789999999988
Q ss_pred EEeCCCcEEEEeCCCCCc
Q 016187 295 TGSMDQKLIIWDLQHSLP 312 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~ 312 (394)
+- ..|+++++.+.+..+
T Consensus 374 ~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ee-cCCceEEEEecCCCC
Confidence 65 357799988876543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=17 Score=33.91 Aligned_cols=154 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 186 (394)
.+....+..+++|.+++.+..-..++-||.........-......+..+.|.+++.+++++..-+.++--+-........
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc
Q ss_pred ecccCcC-----eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 187 FSGHGSS-----VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 187 ~~~h~~~-----v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
+..-... +..+.|.+++..+++|. +-+.+.-...++.....+....-...+..+.|.++++.+++|...-.++
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~--~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGG--SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEEC--CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Q ss_pred E
Q 016187 262 M 262 (394)
Q Consensus 262 i 262 (394)
.
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.73 E-value=7.6 Score=29.70 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=63.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc--------EEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeCCC
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGK--------VVSSLVSHTDSIECIGFSR-----SSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~--------~~~~~~~h~~~i~~v~~~~-----~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.|......|++++..|+|.|.+..... .+..+ .-...|++++-.+ ....|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 445555677788888888888765332 22222 2345666665433 234555555 55789999987
Q ss_pred CCcceeccCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCe
Q 016187 310 SLPRSTCDHEDGVTCLMWLG----TSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
........-.+.|+++.+.. ..+.++.| .+..|.-||..-.+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 65555555567888887743 23344444 45666666654333
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.69 E-value=4.6 Score=40.16 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCC-------C-------------CcceeccCCCCEEEEEEe--CCCCEEEEEeCCCeEEEE
Q 016187 289 SSPWAATGSMDQKLIIWDLQH-------S-------------LPRSTCDHEDGVTCLMWL--GTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iw 346 (394)
+...|+.+..||.|.+|.+.. . .+.....-...++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 445788999999999997631 0 011112234467888988 888899999988888887
Q ss_pred ECCC--CeEEE-EeecccCceeEEEEccCC---C---EEEEEeCCCcEEEEecc
Q 016187 347 DSLS--GDCVR-TFSGHRDAIQAISVSAHQ---D---FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 347 d~~~--~~~~~-~~~~h~~~v~~l~~~~~~---~---~l~s~s~dg~i~iw~~~ 391 (394)
-... .+... .-..|..-|.+|.|-++. . .|++++..|.+-+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4322 11111 111244558899997643 2 78899999999998873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.63 E-value=5.9 Score=34.02 Aligned_cols=139 Identities=17% Similarity=0.300 Sum_probs=73.5
Q ss_pred EEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEec------CCCCEEEEEEcCC
Q 016187 90 FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEG------PGGGVEWVSWHPR 160 (394)
Q Consensus 90 ~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~ 160 (394)
.+||+.+.+....--...-.+.+=+|-+||++|.+|+.. ..+++++.......+.... .......+.--|+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 368887766543221122233344567899999988742 4578887654111111111 1112223444568
Q ss_pred CCEEEEecCCC-eEEEEeCCcc--ceee--eecc-----cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 161 GHIVLAGSEDS-TVWMWNADRA--AYLN--MFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 161 ~~~l~~~s~d~-~i~iw~~~~~--~~~~--~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
|++++.|+... +...|..... .... .+.. ...----+...|+|+.|+.+..+ -.|||..+++.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 89888887764 3445543211 1111 1110 01111245678999999888764 3467888776555544
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.056 Score=49.79 Aligned_cols=144 Identities=17% Similarity=0.334 Sum_probs=92.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecc
Q 016187 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 111 ~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
....|-|.+.-++.++.+..+..||-. ++...... ..+..-.++|..++..+ +.+-..+.+++|++.+..-.+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677888778888889899999854 33332222 33445567888777654 4556678999999876432222122
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
....-.-+.|++.+..++.+-..|.+++++..+.+.+..... |...++++++.+++..+. ++.|..+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vil-~dcd~~L 182 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVIL-CDCDNTL 182 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceeee-cCcHHHH
Confidence 222112267888888888888999999999876654433322 456788888888776543 3444333
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.37 E-value=2.8 Score=43.89 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=83.2
Q ss_pred cCCCeEEEEeCCccceeeeecccCcCeEEEE--------ECCCCCeEEEEeCCCcEEEEcCC----CCceEEEEcCC--C
Q 016187 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGD--------FTPDGKTICTGSDDATLRVWNPK----SGENIHVIRGH--P 233 (394)
Q Consensus 168 s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~--~ 233 (394)
+-|+.+.+|+.++......+.+-...|..+. |.|.=++++.-+.--.|.++-+. ++......... +
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 3688999999988665666666555554443 33333444444444455555332 22111111110 1
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCC---c-E----------------EEEec-cCCCCEEEEEECCCC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTG---K-V----------------VSSLV-SHTDSIECIGFSRSS 290 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i--~d~~~~---~-~----------------~~~~~-~h~~~i~~v~~~~~~ 290 (394)
.....|+|+....+|+.+++|-. |.|.= |....+ + + +.++. .+.++|..+.+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 12345788887778888776654 44432 111111 1 0 11122 467799999999999
Q ss_pred CeEEEEeCCCcEEEEeCCC
Q 016187 291 PWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~ 309 (394)
..+.+-+..|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 9999999999999999965
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.068 Score=49.24 Aligned_cols=133 Identities=11% Similarity=0.180 Sum_probs=88.2
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcE--E
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKV--V 271 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~--~ 271 (394)
....|-|.+..++.++.+-.+..||-.. +..- +.. .......++|..++..+ +.+-..+.+.+||+.+... +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~l--e~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVIL--ELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceec--ccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 3456788877799999999999999543 3221 111 12223345666666544 4566788999999976431 1
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 334 (394)
..--.|+... +.|++..+.++.+-..|.+.|++..........+ |..+++++++.+.+..+
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1111122222 6789999999999999999999987665544555 88889999998876443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.5 Score=34.88 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=44.7
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCccee-------c--------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHSLPRST-------C--------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+..++.+|++...+|.+.+||+.+...... . .....|..+....+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344677899999999999999976432211 1 2345677888888887776654 6889999754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.51 E-value=13 Score=30.97 Aligned_cols=138 Identities=10% Similarity=0.214 Sum_probs=79.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC------cEEEE---eCCC--CCcc--
Q 016187 249 TLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ------KLIIW---DLQH--SLPR-- 313 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg------~i~iw---d~~~--~~~~-- 313 (394)
..|+.+.....|.+|++. ..+++.++.- -+.|..+.++..|.|++|--.+. .+++| .... ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667889999998 3345555543 37899999999999999864432 45664 2221 0100
Q ss_pred eecc---------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EE-----Eee----cc-c
Q 016187 314 STCD---------------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VR-----TFS----GH-R 361 (394)
Q Consensus 314 ~~~~---------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~-----~~~----~h-~ 361 (394)
...+ -...+.|++..|-..-|+.|+ ++++.+|.+..... .. -|. -| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 0111 223456777777655566665 66888887644332 11 111 11 2
Q ss_pred Cc-eeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 362 DA-IQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 362 ~~-v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+. ...++|. +.|+|..+ +-.++++++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 21 3455554 46777655 5568887764
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.40 E-value=6.4 Score=36.59 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=60.2
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC--CC
Q 016187 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL--QH 309 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~--~~ 309 (394)
.++|.++.|++|.+.+++--.+.+|.+++....+. ..+.+..+..|....|+.+.. +|..+..| +.+|-. ..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhh
Confidence 45799999999999999999999999998743221 122233445677777876644 33333333 555543 22
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEE
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l 334 (394)
...+....|.-.|.--+|.++.+.+
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceE
Confidence 3333334455566666666665543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.99 E-value=9.8 Score=40.16 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=100.2
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEE--------cCCCCEEE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--------SMDGQLLA 123 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~--------s~~g~~l~ 123 (394)
.|+.-...+. |...=..+.+.|.=++.-+| -|..+++|+++++.-...+.+-...|-.|.. -|.=++|+
T Consensus 67 IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlL 143 (1311)
T KOG1900|consen 67 IPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLL 143 (1311)
T ss_pred CCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeE
Confidence 3433333333 44444555666754555554 5899999999987666667666666666653 23334555
Q ss_pred EEeCCCcEEEEeCC----CCceE-----EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE--EeCCcc---c-e-----
Q 016187 124 SGGLDGLVQIWDPS----SGNLK-----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM--WNADRA---A-Y----- 183 (394)
Q Consensus 124 t~s~d~~i~vwd~~----~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i--w~~~~~---~-~----- 183 (394)
.-+.--.|.++-+. ++... .++.-..-.|+++....+|+.+++|-. |.++- |....+ + +
T Consensus 144 vvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 144 VVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccC
Confidence 44445556665432 22111 122223456888887788887777654 44432 222110 0 0
Q ss_pred -----------eeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 184 -----------LNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 184 -----------~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
+-.+. .+..+|..+.+...-+.+.+-+..|+|++||+..
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11223 5677899999988888899999999999999876
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.80 E-value=21 Score=32.27 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceE---EEEecCCCCE-EEEEEcCCCCEEEEecC-----CCeEEEEeCCccce
Q 016187 118 DGQLLASGGLDG-----LVQIWDPSSGNLK---CTLEGPGGGV-EWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAY 183 (394)
Q Consensus 118 ~g~~l~t~s~d~-----~i~vwd~~~~~~~---~~~~~~~~~v-~~~~~~~~~~~l~~~s~-----d~~i~iw~~~~~~~ 183 (394)
++.+++.|+.++ .+..+|+.+.+.. ..+.....+. ...+..-++++++.|+. ...+..||+.+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 456667777542 4666777665541 1221111111 11111224566666664 24678888776542
Q ss_pred eee--ecccCcCeEEEEECCCCCeEEEEeCCCc----EEEEcCCCCc
Q 016187 184 LNM--FSGHGSSVTCGDFTPDGKTICTGSDDAT----LRVWNPKSGE 224 (394)
Q Consensus 184 ~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~~~~ 224 (394)
... +.... .........+++..+.|+.++. +..||+.+.+
T Consensus 152 ~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 221 11111 1111122335667777776543 4578887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.65 E-value=17 Score=31.22 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-C--CcEEEEcCCC---CceEEEEcCCCCcccCeEEEEEcCC
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d--g~i~vwd~~~---~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.+||+.+.+...........+.+-++.+||++|.+|+. + ..+|+++... ..........-.....-.++..-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46887776543322223334445568899999998875 2 3578887644 1111111000000111122344568
Q ss_pred CCEEEEEeCC
Q 016187 248 STLALSGSKD 257 (394)
Q Consensus 248 ~~~l~~g~~d 257 (394)
|+.++.|+..
T Consensus 129 G~vlIvGG~~ 138 (243)
T PF07250_consen 129 GRVLIVGGSN 138 (243)
T ss_pred CCEEEEeCcC
Confidence 8888887766
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=87.45 E-value=23 Score=32.36 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=21.4
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEE-EE-cCCCCEEEEEeCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSL-AF-SMDGQLLASGGLD 128 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v-~~-s~~g~~l~t~s~d 128 (394)
.+..||..+.++.............. +. .-+|++.+.|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 46678888777655321111111111 12 3467778888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.8 Score=41.11 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=43.3
Q ss_pred CCCCEEEEecCCCeEEEEeCCc----ccee-----------eeecc-----------cCcCeEEEEECC----CCCeEEE
Q 016187 159 PRGHIVLAGSEDSTVWMWNADR----AAYL-----------NMFSG-----------HGSSVTCGDFTP----DGKTICT 208 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~----~~~~-----------~~~~~-----------h~~~v~~~~~~~----~~~~l~s 208 (394)
++...++.+..||.+....... +... +.+.+ .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777888888887776543 1110 00110 123345566666 6788999
Q ss_pred EeCCCcEEEEcCCCCceEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~ 229 (394)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=87.17 E-value=27 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
..|..+...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888888889999999999999999864
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.14 E-value=23 Score=32.11 Aligned_cols=144 Identities=15% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCEEEEEEcCCCCEEEEecCCCe------EEEEeCCc--c--cee---e--eecccC-c-------CeEEEEECCCCCeE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDST------VWMWNADR--A--AYL---N--MFSGHG-S-------SVTCGDFTPDGKTI 206 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~------i~iw~~~~--~--~~~---~--~~~~h~-~-------~v~~~~~~~~~~~l 206 (394)
+.+..+.+.+++..+++.+.++. ++...+.. . ..+ . .+..-. . ..-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55677777766666666676666 55554432 0 000 0 011111 1 22367777788888
Q ss_pred EEEeCC------CcEEEEcCCCCceEEEEcCC------------CCcccCeEEEEEcCCCCEEEEEeCC-----C--c--
Q 016187 207 CTGSDD------ATLRVWNPKSGENIHVIRGH------------PYHTEGLTCLTISADSTLALSGSKD-----G--S-- 259 (394)
Q Consensus 207 ~s~~~d------g~i~vwd~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~g~~d-----g--~-- 259 (394)
++.-.+ ..|+.++.. |+....+... .....+.-.++++|+|+.++++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 788888866 5544433211 1134568899999999966654332 2 1
Q ss_pred -----EEE--EECCC-CcEEEEe----cc-----CCCCEEEEEECCCCCeEE
Q 016187 260 -----VHM--VNITT-GKVVSSL----VS-----HTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 260 -----i~i--~d~~~-~~~~~~~----~~-----h~~~i~~v~~~~~~~~l~ 294 (394)
+++ +|..+ ++....+ .. ....|..+.+-+++.+|+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 344 45544 3222222 11 234567777777777554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.04 E-value=4.2 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEeecccCceeEEEE
Q 016187 329 GTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 329 ~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
|++++|+++. .+++|.++|..+++.+.++.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 4666666655 5789999999999988887753322 35544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=86.94 E-value=41 Score=34.80 Aligned_cols=191 Identities=10% Similarity=0.100 Sum_probs=103.9
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCC--
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN---ITT-- 267 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d---~~~-- 267 (394)
.++...++.-+.+|.|+--....... ...++.. ....+..+........++..+..|.+.... +..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK--e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK--EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC--CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 34567788889999998776543211 0000000 122344444444555556666677766554 322
Q ss_pred ----CcEEE---EeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcc-------eeccCCCCEEEEEEeCCC
Q 016187 268 ----GKVVS---SLVSHTDSIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPR-------STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 268 ----~~~~~---~~~~h~~~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~ 331 (394)
|..+. .+.....-+.++.+.. +..+++..+..|.++--++...... ....-.+.+..+......
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence 23321 2222233355555552 5678999999999987765422110 011123344444444555
Q ss_pred CEEEEEeCCCeEEEEECCC---------CeEEEEeecccCceeE-EEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 332 KYVVTGCVDGKVRVWDSLS---------GDCVRTFSGHRDAIQA-ISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..|+..+..|.+..+.+.. |.....+.. ...|.. +.+.++..+++..+..|.++...+.+|
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~ 723 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEY 723 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHh
Confidence 6777788888887776421 222223332 233433 444444447888999999988877665
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.78 E-value=30 Score=36.66 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
....++|+|.-.++|.+...|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34578999999999999999999999654
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.47 E-value=3.6 Score=40.39 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=28.9
Q ss_pred EEEEEEeC----CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 322 VTCLMWLG----TSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 322 v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
+..++... +..+|++-+.|+++|+||+.+++++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 44555555 67899999999999999999999977653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.99 E-value=4.6 Score=23.07 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred cccCEEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 016187 106 HKDSVSSLAFSMDGQLLA-SGGLD--GLVQIW 134 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~-t~s~d--~~i~vw 134 (394)
....-....|||||++|+ ++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999998876 44455 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=85.77 E-value=27 Score=31.54 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCEEEEEeC-----CCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCC----eEEEEeCCccc
Q 016187 118 DGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAA 182 (394)
Q Consensus 118 ~g~~l~t~s~-----d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~----~i~iw~~~~~~ 182 (394)
++.+.+.|+. ...+..||+.+.+....-..+. ......+...++++++.|+.++ .+.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4666666664 2357888988776643211111 1112222234567777777653 35678877654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.73 E-value=4.9 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCeEEEEEcCCCeeeEeecC
Q 016187 74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG 105 (394)
Q Consensus 74 p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~ 105 (394)
|++.+++++.-.++++.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45566777777889999999988877766654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=85.41 E-value=41 Score=33.43 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EEec-CCCCEEEEEEcCC------CCEEEEecC-C---CeE
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEG-PGGGVEWVSWHPR------GHIVLAGSE-D---STV 173 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~------~~~l~~~s~-d---~~i 173 (394)
.+.|-.+.|.++++.+++.-.+|.|.+||...+.... .+.. +...+..-+|-++ ..++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999983322211 1111 1111211122221 234444333 2 245
Q ss_pred EEEeC--Cccceeeeec---ccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc-c--cCeEEEEE
Q 016187 174 WMWNA--DRAAYLNMFS---GHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-T--EGLTCLTI 244 (394)
Q Consensus 174 ~iw~~--~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~~i~~~~~ 244 (394)
+++.+ ...+. ..+. .+........|.. +|+...- .+++|.+|.+..-+..+.+.....- . ..+.++..
T Consensus 209 kL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSI-FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcce-EEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 66666 22221 1111 1111222223332 4443322 6778999998777665555433111 1 23444443
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 245 SADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 245 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
-...+.+++ .+.+|++.|+.-..++.++.
T Consensus 286 ~s~nRvLLs--~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLS--VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence 333445443 46789999987665555443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.12 E-value=5 Score=22.92 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=21.4
Q ss_pred EeecccCceeEEEEccCCCEEEEEe-CC--CcEEEE
Q 016187 356 TFSGHRDAIQAISVSAHQDFLVSVS-LD--GTARVF 388 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l~s~s-~d--g~i~iw 388 (394)
.+....+.....+|+|||++|+-++ .+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444455667889999999887554 45 666666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=12 Score=34.91 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=120.4
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCC--------CeEEEEeCCCcEEEE
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDG--------KTICTGSDDATLRVW 218 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~--------~~l~s~~~dg~i~vw 218 (394)
+|.+..--|-...++.|..+|.+.+....-.. .-..+.....+ ++..+.| ++.+....+....++
T Consensus 117 pv~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p---~aLd~qgr~leh~~~~lalA~~~~~qf~~~ 193 (733)
T COG4590 117 PVLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEP---LALDEQGRLLEHPLQQLALALTAEAQFATY 193 (733)
T ss_pred CcccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCc---cccCcccCcccchHHHhhhccchhhHHHHh
Confidence 44444333445688889999999887643111 00111111111 1222222 233444555555555
Q ss_pred cCCCCceE---------EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeccC-CC----CEE-
Q 016187 219 NPKSGENI---------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSH-TD----SIE- 282 (394)
Q Consensus 219 d~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h-~~----~i~- 282 (394)
+......+ ..++.-+.....+..+-..|+++.+..-+. ..+.++++.+...- .++... .+ .|+
T Consensus 194 ~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte 272 (733)
T COG4590 194 DNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTE 272 (733)
T ss_pred hhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHH
Confidence 54322111 001111122345667788999998877655 67888887654321 112111 11 111
Q ss_pred EEEECCCCCeEEEEeCCCcEEEE-eCCCC-Ccceec----c-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIW-DLQHS-LPRSTC----D-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iw-d~~~~-~~~~~~----~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
++..-..+.-++.++.||.|.-| |.+.. .++... . ....+..+.--.+.+-+++-...|++.++.....+.+-
T Consensus 273 ~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL 352 (733)
T COG4590 273 QLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL 352 (733)
T ss_pred HHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee
Confidence 11112234457788889988877 44332 111110 0 11223323222234556677888999888765555432
Q ss_pred EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+..--+.+..+++||.+.++++- +.|.|+++.+++
T Consensus 353 -~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 353 -FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred -hhhhhcCcceeeeCcccchheee-cCCceEEEEecC
Confidence 22222356789999999998854 467799998875
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.16 E-value=21 Score=33.96 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEC---------CCCcEEEE---e------c--cCCCCEEEEEECCCC---CeEE
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNI---------TTGKVVSS---L------V--SHTDSIECIGFSRSS---PWAA 294 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~---------~~~~~~~~---~------~--~h~~~i~~v~~~~~~---~~l~ 294 (394)
.|..+..++.|..++-.+.+|.+.+.=. ..|+..-. + . ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3566788999999998888886544321 12221110 0 0 011124456666664 4566
Q ss_pred EEeCCCcEEEEeCCC
Q 016187 295 TGSMDQKLIIWDLQH 309 (394)
Q Consensus 295 s~s~dg~i~iwd~~~ 309 (394)
.-+.|.++++||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 666677777777643
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.09 E-value=41 Score=32.30 Aligned_cols=143 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred CcEEEEecCC-----CeEEEEEcCCCeeeEeecC----cccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceE
Q 016187 77 ATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (394)
Q Consensus 77 ~~~lasg~~d-----~~v~~w~~~~~~~~~~~~~----h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~ 142 (394)
..+.+.||.+ ..+..+|+.+.++...-.. ....-.+++. -++++.+.|+.++ .+..||+.+.+..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 4455666654 3467788887776542211 0011112222 2455666666543 4677888776654
Q ss_pred EEEe-----cCCCCEEEEEEcCCCCEEEEecCC----CeEEEEeCCccceeeeecc-----cCcCeEEEEECCCCCeEEE
Q 016187 143 CTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 143 ~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d----~~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s 208 (394)
..-. ....... +. ..++++++.++.+ ..+.+||+.+.+-.+.-.. ......++ .-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~~~-~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGGAG-LE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCCcE-EE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEE
Confidence 2211 0011111 11 2256667766654 4688899876543222110 11111122 225667777
Q ss_pred EeCC--------------CcEEEEcCCCCc
Q 016187 209 GSDD--------------ATLRVWNPKSGE 224 (394)
Q Consensus 209 ~~~d--------------g~i~vwd~~~~~ 224 (394)
|+.. ..+.++|+.+.+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCE
Confidence 7753 247788887654
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=83.98 E-value=31 Score=30.82 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCC---------CcccCeEEEEEcCCCCEEEEEeC------------------CCcEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHP---------YHTEGLTCLTISADSTLALSGSK------------------DGSVH 261 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~g~~------------------dg~i~ 261 (394)
|-..|.+.+.| ...+.+..+.... ......-.+.+.++|+.+++... |+.+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~ 99 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQ 99 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeE
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCe----EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPW----AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~----l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
-.|+.+++++.+...-. .+.+.... -..+.....-..||.-+ ++++...++|.+|++.
T Consensus 100 EiDi~TgevlfeW~a~D------H~~~~~~~~~~~~~~~~g~~~~~~~D~~H------------iNsV~~~~~G~yLiS~ 161 (299)
T PF14269_consen 100 EIDIETGEVLFEWSASD------HVDPNDSYDSQDPLPGSGGSSSFPWDYFH------------INSVDKDDDGDYLISS 161 (299)
T ss_pred EeccCCCCEEEEEEhhh------eecccccccccccccCCCcCCCCCCCccE------------eeeeeecCCccEEEEe
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeE-----EEEccCCCEEEEEeCCCcEEEEe
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQA-----ISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
-.-..|.+.|..+|+.+-.+.|-.+.=.. +++-.|.+++-....+++|.+||
T Consensus 162 R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 162 RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=83.91 E-value=33 Score=31.07 Aligned_cols=144 Identities=16% Similarity=0.293 Sum_probs=80.9
Q ss_pred cCeEEEEECCCCCeEEEEeCCCc------EEEEcCCCC----ceEEE-----Ec---CCCCc--ccCeEEEEEcCCCCEE
Q 016187 192 SSVTCGDFTPDGKTICTGSDDAT------LRVWNPKSG----ENIHV-----IR---GHPYH--TEGLTCLTISADSTLA 251 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~------i~vwd~~~~----~~~~~-----~~---~~~~~--~~~i~~~~~~~~~~~l 251 (394)
+.++.+.+.|++..+++.+.+|. +...++... ..+.. +. +.++. .-..-.+++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34566777766666666677776 544444320 11111 11 11110 0123356677888888
Q ss_pred EEEeCC------CcEEEEECCCCcEEEEec---------------cCCCCEEEEEECCCCCeEEEEeC-----CC-----
Q 016187 252 LSGSKD------GSVHMVNITTGKVVSSLV---------------SHTDSIECIGFSRSSPWAATGSM-----DQ----- 300 (394)
Q Consensus 252 ~~g~~d------g~i~i~d~~~~~~~~~~~---------------~h~~~i~~v~~~~~~~~l~s~s~-----dg----- 300 (394)
++.-.+ ..|..++.. |+.+..+. ......++++++|++..|.++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 788888876 66544431 12346889999999995554432 22
Q ss_pred ----cEEE--EeCCC-CCcc--e--ecc------CCCCEEEEEEeCCCCEEEE
Q 016187 301 ----KLII--WDLQH-SLPR--S--TCD------HEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 301 ----~i~i--wd~~~-~~~~--~--~~~------~~~~v~~~~~~~~~~~l~s 336 (394)
.++| ||... .... . ... ....++.+.+.+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1445 44443 1111 1 111 3456888999999987764
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.86 E-value=42 Score=32.28 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC---eEEEEECCCC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---VTCGDFTPDG 203 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~---v~~~~~~~~~ 203 (394)
......+.|. .|.+...+.........+...++|++++... ..++.+|.... .+..+..-... =..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence 3455666664 3555544433222211155678888776554 77888887533 22222111100 1235677899
Q ss_pred CeEEEEeC-------------CCcEEEEcCCCCceEEEEcCCC----Cc-------------c-------cCeEEEEEcC
Q 016187 204 KTICTGSD-------------DATLRVWNPKSGENIHVIRGHP----YH-------------T-------EGLTCLTISA 246 (394)
Q Consensus 204 ~~l~s~~~-------------dg~i~vwd~~~~~~~~~~~~~~----~~-------------~-------~~i~~~~~~~ 246 (394)
++|+.+.. .-.|..+| .+|+.+..+.... .. . -.++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99887771 11244555 5666554432100 00 0 1378889988
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 247 -DSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 247 -~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
++.+++++-.-..|..+|.+++++.-.+-.+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 5555555555558888998888776665444
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=83.68 E-value=40 Score=31.82 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
.|..+...+..+.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488899999889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=83.59 E-value=35 Score=31.08 Aligned_cols=66 Identities=17% Similarity=0.357 Sum_probs=35.1
Q ss_pred CCcEEEEecCC-----CeEEEEEcCCCeeeEe--ecC---cccC-EEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 016187 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI 133 (394)
Q Consensus 76 ~~~~lasg~~d-----~~v~~w~~~~~~~~~~--~~~---h~~~-V~~v~~s~~g~~l~t~s~d-----------~~i~v 133 (394)
+..+++-||.+ ..+.++|..+.++... +.. .... -.+++ ..++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 34566666643 2467788887766532 110 0111 11222 2345666677654 24778
Q ss_pred EeCCCCceE
Q 016187 134 WDPSSGNLK 142 (394)
Q Consensus 134 wd~~~~~~~ 142 (394)
||+.+.+..
T Consensus 164 yd~~~~~W~ 172 (341)
T PLN02153 164 YNIADGKWV 172 (341)
T ss_pred EECCCCeEe
Confidence 888877654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.51 E-value=14 Score=29.81 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=24.5
Q ss_pred CEEEEEEeCCC------CEEEEEeCCCeEEEEECC
Q 016187 321 GVTCLMWLGTS------KYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 321 ~v~~~~~~~~~------~~l~sg~~dg~i~iwd~~ 349 (394)
.+..++|+|.| .+|++-+.+|.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999964 478889999999999754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=83.34 E-value=38 Score=31.36 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d 128 (394)
.+..||..+.++...-....... .++....++.+.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46677877777655321101111 111211467777777754
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=82.86 E-value=48 Score=32.16 Aligned_cols=243 Identities=15% Similarity=0.204 Sum_probs=106.9
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecC-CCCEEEEEEcCCC-CEEEEecC--CCeEEEEeCCccceeeeecc
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGP-GGGVEWVSWHPRG-HIVLAGSE--DSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~s~--d~~i~iw~~~~~~~~~~~~~ 189 (394)
..++..++.+..+|.+..-.+.... .....-+. .....++.+..++ .+++.||. |+.+..|....-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4567788889999998887654322 11222122 3344556665555 36666665 4555556544334444443
Q ss_pred cCcCeEEEEECCC----CC------eEEEEe---CCCcEEEEcCCCCceEE--EEcCCCCc-ccCeEEEEEcC-CCCEEE
Q 016187 190 HGSSVTCGDFTPD----GK------TICTGS---DDATLRVWNPKSGENIH--VIRGHPYH-TEGLTCLTISA-DSTLAL 252 (394)
Q Consensus 190 h~~~v~~~~~~~~----~~------~l~s~~---~dg~i~vwd~~~~~~~~--~~~~~~~~-~~~i~~~~~~~-~~~~l~ 252 (394)
.-++|..+.+.+. .. .|++++ .+|++++.. .|-... ........ ...+..+.... +..+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3457777776421 11 555554 467888874 232222 11111100 12233333222 145666
Q ss_pred EEeCCCcEEEEECC---CCcEEEEeccCCCCEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCcceec--cC
Q 016187 253 SGSKDGSVHMVNIT---TGKVVSSLVSHTDSIECIGFSRSSPWAATGSM---------DQKLIIWDLQHSLPRSTC--DH 318 (394)
Q Consensus 253 ~g~~dg~i~i~d~~---~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~--~~ 318 (394)
.+..+.+ +++.+. ....+..+.. . .|..+.+.|+.+.. ...|++.+.......... ..
T Consensus 376 ~S~~~~T-~vl~~~~~d~~e~~~e~~~------~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~ 447 (504)
T PF10433_consen 376 LSFPNET-RVLQISEGDDGEEVEEVEE------D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPA 447 (504)
T ss_dssp EEESSEE-EEEEES----SSEEEEE----------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TT
T ss_pred EEcCCce-EEEEEecccCCcchhhhhh------c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCC
Confidence 5555443 333332 2222222110 0 22233333333322 223666665443322221 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-c----ccCceeEEEEcc
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-G----HRDAIQAISVSA 371 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~----h~~~v~~l~~~~ 371 (394)
...|.+.+. .+.+++.+..++.+.++.+.......... . -...|.++..+|
T Consensus 448 ~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 448 GSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 223433333 44677777788999999887666543322 1 356788887765
|
... |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=43 Score=31.05 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCCCEEEEEeCCC-----------cEEEEeCCCCceEEEEec-CCCCEEEEEEc-CCCCEEEEecCC
Q 016187 117 MDGQLLASGGLDG-----------LVQIWDPSSGNLKCTLEG-PGGGVEWVSWH-PRGHIVLAGSED 170 (394)
Q Consensus 117 ~~g~~l~t~s~d~-----------~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~s~d 170 (394)
-++.+.+.|+... .+..||+.+......-.. +.......+.. .++++++.|+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3566666776532 467788877665432111 11111111222 467777777754
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=81.62 E-value=52 Score=31.70 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC---EEEEEEcCCCCEEEEecC-------------CCeEEEE
Q 016187 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRGHIVLAGSE-------------DSTVWMW 176 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~s~-------------d~~i~iw 176 (394)
+.+-++|.+++..+ ..++..|.. |+.......+.+. =..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678998887555 778888875 6655444332211 123566788887776661 1123333
Q ss_pred eCCccceeeeec-------------------------ccC--cCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 177 NADRAAYLNMFS-------------------------GHG--SSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 177 ~~~~~~~~~~~~-------------------------~h~--~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
| .+++.+..+. ... .-+.++.+.+ ++.+++|+-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 3 3333222110 000 1367888888 555555555555788888888877666
Q ss_pred EcC
Q 016187 229 IRG 231 (394)
Q Consensus 229 ~~~ 231 (394)
+..
T Consensus 309 lg~ 311 (477)
T PF05935_consen 309 LGP 311 (477)
T ss_dssp ES-
T ss_pred eCC
Confidence 654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=81.44 E-value=12 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=36.9
Q ss_pred CEEEEEeCCCeEEEEECC--CCeEEEEeecccCceeEEEEccCCCEEEEEe
Q 016187 332 KYVVTGCVDGKVRVWDSL--SGDCVRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
..|+.+...+.|.+|++. ..+.+.+|.-- +.|..+.++..|+||+|-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 455555778889999987 34456677654 6899999999999999863
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.92 E-value=31 Score=28.73 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=87.1
Q ss_pred CCcEEEEecC--CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCCCE
Q 016187 76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152 (394)
Q Consensus 76 ~~~~lasg~~--d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v 152 (394)
++.++.|.|. -..|++|++.+++.+.+-.--.+.+..=-...-|.++ +-.=.++.-.++|..+-+.+..+.-... =
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-G 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-G 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-c
Confidence 4566666653 5568999999887654322111222211111223322 1223577788888887776655443222 1
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec--ccCcCe---EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEE
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSV---TCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~--~h~~~v---~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 227 (394)
.. ...++..|+.+....+++.-|.++-......+ ..+.+| +-+.|. +|...|-.=.+..|-..++.+|+.+.
T Consensus 134 Wg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 22 23345556666666677766665433222211 112222 222332 45555544445556566677776554
Q ss_pred EEcCCC---------CcccCeEEEEEcCCC-CEEEEE
Q 016187 228 VIRGHP---------YHTEGLTCLTISADS-TLALSG 254 (394)
Q Consensus 228 ~~~~~~---------~~~~~i~~~~~~~~~-~~l~~g 254 (394)
.+.... .+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443211 122335567777766 455554
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.70 E-value=4.9 Score=21.80 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
..++.++.+|.+..+|..+|+.+-++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999877543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.17 E-value=56 Score=31.13 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=38.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEE----e-cCCCCEEEEEEcCCC
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTL----E-GPGGGVEWVSWHPRG 161 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~----~-~~~~~v~~~~~~~~~ 161 (394)
-..-+.|+|.|||++|++--..|.|++++..++... ..+ . ...+....++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 445678999999988877655799999986554321 111 1 135678899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 394 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-34 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-29 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-29 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-12 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-29 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-29 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-29 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-29 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-29 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-29 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-29 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-29 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-29 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-29 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-12 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-29 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-12 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-29 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-12 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-29 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 9e-19 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 8e-29 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-29 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-28 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-26 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-24 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-23 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 9e-22 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-12 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-21 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-12 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-21 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-12 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-21 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-20 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-11 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-20 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-19 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 9e-09 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-18 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-17 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-17 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-17 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-17 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-17 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-13 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-16 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-16 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-07 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-16 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-16 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-16 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-16 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-09 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-16 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-15 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-09 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-16 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-16 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-16 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-09 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-16 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-16 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 8e-16 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-11 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-14 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-10 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-13 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 7e-12 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-09 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-10 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 5e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-10 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-09 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-09 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 9e-08 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-07 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-07 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-07 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-07 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-07 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 6e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 7e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 9e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-06 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 1e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 1e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 1e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 2e-05 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 2e-05 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 3e-05 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 3e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 4e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 9e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 4e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.98 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.98 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.9 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.9 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.89 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.88 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.87 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.85 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.85 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.83 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.83 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.82 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.82 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.78 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.78 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.77 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.76 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.76 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.76 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.75 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.75 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.74 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.74 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.71 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.7 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.68 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.68 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.67 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.66 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.64 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.63 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.62 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.61 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.59 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.59 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.58 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.55 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.55 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.54 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.53 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.53 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.51 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.51 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.47 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.42 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.4 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.37 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.37 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.36 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.35 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.33 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.3 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.28 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.28 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.27 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.27 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.26 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.22 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.16 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.09 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.03 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.03 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.98 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.96 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.95 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.95 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.94 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.91 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.9 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.89 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.88 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.85 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.75 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.75 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.75 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.73 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.73 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.72 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.69 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.67 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.66 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.65 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.63 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.61 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.6 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.56 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.55 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.5 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.5 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.49 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.46 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.46 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.43 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.43 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.33 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.31 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.28 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.27 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.19 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.17 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.16 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.06 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.04 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.04 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.01 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.0 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.99 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.93 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.67 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.64 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.56 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.53 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.51 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.49 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.43 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.42 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.29 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.19 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.11 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.07 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.07 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.05 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.03 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.97 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.91 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.86 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.83 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.75 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.7 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.68 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.67 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.62 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.31 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.16 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.81 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.55 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.53 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.47 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.33 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.27 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.1 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.01 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.85 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.38 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.92 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.88 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.21 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.79 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 89.34 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 88.93 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 88.28 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 87.76 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 86.71 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 85.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 82.91 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 81.58 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.58 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=432.40 Aligned_cols=333 Identities=21% Similarity=0.385 Sum_probs=289.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+.+|.+.|++++|+|++..+|+||+.|+++++|+..++++...+.+|.+.|++++|+|+|++|++|+.|++|++||+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 45678999999999999977678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe-------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-------------------------
Q 016187 137 SSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL------------------------- 184 (394)
Q Consensus 137 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~------------------------- 184 (394)
.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+
T Consensus 220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 9998888774 68999999999999999999999999999998865433
Q ss_pred ------------------eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-CCC------------
Q 016187 185 ------------------NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-GHP------------ 233 (394)
Q Consensus 185 ------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~------------ 233 (394)
..+.+|...|++++|+|+|++|++++.|++|++||+.+++....+. .|.
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 2345799999999999999999999999999999998765432210 000
Q ss_pred ------------------------------------------------------------------CcccCeEEEEEcCC
Q 016187 234 ------------------------------------------------------------------YHTEGLTCLTISAD 247 (394)
Q Consensus 234 ------------------------------------------------------------------~~~~~i~~~~~~~~ 247 (394)
.+...+.+++++|+
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 01234678999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcce--ec-cCCCC
Q 016187 248 STLALSGSKDGSVHMVNITTGKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRS--TC-DHEDG 321 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~--~~-~~~~~ 321 (394)
++++++|+.|++|++||+.+++. +.. ..|...|.+++|+|++++|++++.|++|++|++.. ..... .. .|...
T Consensus 460 g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 538 (611)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred CCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc
Confidence 99999999999999999987653 233 67999999999999999999999999999999875 32221 22 38899
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EE-EEeecc-cCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD-CV-RTFSGH-RDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|.+++|+|++++|++|+.|++|++|++.++. ++ ..+.+| ...|++++|+|+++ |+|++.|++|++|++.
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999999999999999999998865 33 677899 89999999999998 9999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-55 Score=427.73 Aligned_cols=337 Identities=22% Similarity=0.330 Sum_probs=287.7
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeE-------------------------------
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WAS------------------------------- 101 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~------------------------------- 101 (394)
.....|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.+++ ...
T Consensus 50 ~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 456778999999999999995 6799999999999999985322 111
Q ss_pred -------------eecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe
Q 016187 102 -------------EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167 (394)
Q Consensus 102 -------------~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (394)
.+.+|.+.|++++|+|++. +|++|+.|++|++||..+++...++.+|...|.+++|+|++++|++|
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 2356777788888888876 59999999999999999998889999999999999999999999999
Q ss_pred cCCCeEEEEeCCccceeeeec-------ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--------
Q 016187 168 SEDSTVWMWNADRAAYLNMFS-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-------- 232 (394)
Q Consensus 168 s~d~~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------- 232 (394)
+.|++|++|+..+++.+..+. +|...|.+++|+|++++|++++.|++|++||+.+++.+..+...
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999888777763 79999999999999999999999999999999988765544211
Q ss_pred --------------------------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-c----
Q 016187 233 --------------------------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-V---- 275 (394)
Q Consensus 233 --------------------------------~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~---- 275 (394)
..|...|++++|+|+++++++++.|++|++||+.+++....+ .
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 236678999999999999999999999999999876543321 0
Q ss_pred -----------------------------------------------------------------------------cCC
Q 016187 276 -----------------------------------------------------------------------------SHT 278 (394)
Q Consensus 276 -----------------------------------------------------------------------------~h~ 278 (394)
.|.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 123
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEE
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS-GDCVR 355 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~ 355 (394)
..+.+++|+|++++||+|+.|++|++||+..... .....|...|++++|+|++++|++++.|++|++|++.+ ++++.
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 4577899999999999999999999999876432 12357889999999999999999999999999999987 66655
Q ss_pred E--eecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 356 T--FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 356 ~--~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
. +.+|...|++++|+||+++|||||.|++|++|++..
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 4 345999999999999999999999999999999864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=405.21 Aligned_cols=325 Identities=28% Similarity=0.516 Sum_probs=296.5
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|...|++++|+|+ +.+|++++.|+.+++|+. .++....+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 456677899999999999995 668899999999999996 467778899999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|... +.+..+.+|...+.+++|+|+++++++++.|+.+++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 9764 455677889999999999999999999999999999996 45667788899999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|++||. +++.+..+.+ |...+++++|+|+++++++++.|++|++||+ +++.+..+..|...|.+++|+|++++|+
T Consensus 409 v~~~~~-~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp EEEECT-TCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred EEEEeC-CCCEEEEecC---CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999995 5666666665 5678999999999999999999999999996 5678888999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
+++.|++|++||...........|...|++++|+|++++|++++.||.|++||. +++++..+.+|.+.|++++|+||++
T Consensus 484 s~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 484 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCC
Confidence 999999999999876666666789999999999999999999999999999995 7899999999999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q 016187 375 FLVSVSLDGTARVFE 389 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~ 389 (394)
+|+|+|.|++|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-53 Score=393.73 Aligned_cols=289 Identities=24% Similarity=0.495 Sum_probs=272.2
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
...+.+|.++|++++|+|++.+|++|+.|++|+|||+.+++...++.+|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
+.+.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++++..+.+ |...+.++.++|++.++++|+.|++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCccEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999999999999999999999999999999998888875 4678999999999999999999999
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCC--------------------CCeEEEEeCCCcEEEEeCCCCCcc-eeccC
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRS--------------------SPWAATGSMDQKLIIWDLQHSLPR-STCDH 318 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~--------------------~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 318 (394)
|++||+.++++...+..|...|.+++|+|+ +.+|++|+.|++|++||+++.... ...+|
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 999999999999999999999999999996 678999999999999999876543 34578
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|+|||.||+|++|++.
T Consensus 338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-52 Score=378.03 Aligned_cols=288 Identities=24% Similarity=0.419 Sum_probs=266.2
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+...++.+|.+.|++++|+|+|++|++|+.|++|++||+.+++....+..|...|.+++|+|+++++++|+.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc----ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 178 ADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 178 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
+.+. .....+.+|...|.++.|++++. +++++.|++|++||+.+++.+..+.+ |...|.+++++|++.++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC---CCCceEEEEECCCCCEEEE
Confidence 8764 34566789999999999998765 88999999999999999998887765 5678999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCC---CCEEEEEEeCC
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE---DGVTCLMWLGT 330 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~ 330 (394)
|+.|++|++||+++++.+..+..|...|.+++|+|++.+|++++.|++|++||++.........|. ..|++++|+|+
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999876544444333 47999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|+|||.||+|++|+
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=389.73 Aligned_cols=290 Identities=29% Similarity=0.494 Sum_probs=270.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....+.+|.++|++++|+|+ +.+|+||+.|++|++||+.+++....+.+|.+.|++++|+|+|++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 35678899999999999995 56899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
+.+++.+.++.+|...|.+++|+|++.++++|+.|++|++||+.++.++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--------------------STLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
++||+.+++....+.. |...+.++.|+|+ +.++++|+.|++|++||+++++++..+.
T Consensus 259 ~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 259 RVWVVATKECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp EEEETTTCCEEEEECC---CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCceeeEecC---CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 9999999988877765 5667999999996 6789999999999999999999999999
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+|...|.+++|+|++.+|++++.|++|++||+...... ....|...|++++|+|++++|++|+.||+|++|+.+
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999776443 445788999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-52 Score=374.02 Aligned_cols=289 Identities=24% Similarity=0.393 Sum_probs=266.2
Q ss_pred eEeecCcccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCce--EEEEecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 100 ASEIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~----g~~l~t~s~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
...+++|.++|++++|+|+ +.+|+||+.|++|+||++..++. ...+.+|...|.+++|+|++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999985 67999999999999999887754 44678999999999999999999999999999
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+.+++....+.. +...+.+++|+|+++++++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999988777664 4567999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCC
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~ 332 (394)
|+.|+.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|++|++||++..... ...+|...|.+++|+|+++
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999876443 3457889999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|++|+.||+|++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|++||+.
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=370.06 Aligned_cols=290 Identities=21% Similarity=0.377 Sum_probs=265.7
Q ss_pred ceeeeeccCCcEEEEEEcCC---CCcEEEEecCCCeEEEEEcCCCee--eEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~---~~~~lasg~~d~~v~~w~~~~~~~--~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
....+.+|.+.|++|+|+|+ ++.+|+||+.|++|++|++..++. ...+.+|...|.+++|+|++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34556799999999999985 356899999999999999987754 4468999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
|++||+.+++.+..+..+...+..++|+|++++|++++.|+.+++|++.+++....+..|...+.+++|+|++++|++|+
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999999988888999999999999999999999999999999988888889999999999999999999999
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
.||.|++||+++++.+..+.+ |...|++++|+|+++++++|+.|++|++||+++++.+..+.+|...|.+++|+|++
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECC---CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 999999999999998888775 46679999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.+|++++.|++|++||+.+..+. ....|...|.+++|+|++++|++++.||.|++||.
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999876544 34578899999999999999999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=393.94 Aligned_cols=327 Identities=29% Similarity=0.520 Sum_probs=298.2
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|...|.+++|+|+ +.+|++++.|+.+++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 446678899999999999995 567889999999999996 567788899999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
+. +++....+.+|...|.+++|+|++.++++++.|+.+++|+.... .+..+.+|...+.+++|+|++++|++++.|+.
T Consensus 290 ~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 290 NR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 96 46777788999999999999999999999999999999998654 45667889999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|++||. +++.+..+.. |...|++++|+|+++++++++.|+.|++||. +++.+..+..|...|.+++|+|++++|+
T Consensus 368 v~~~~~-~~~~~~~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 368 VKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp EEEEET-TCCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEEEcC-CCCEEEEecC---CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 999995 5666666665 5678999999999999999999999999995 6778889999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
+++.|++|++||+..........|...|.+++|+|++++|++++.|+.|++|| .++++++.+.+|...|++++|+|+++
T Consensus 443 ~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 443 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCC
Confidence 99999999999987666666678999999999999999999999999999999 47899999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecc
Q 016187 375 FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~ 391 (394)
+|++++.||.|++||..
T Consensus 522 ~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 522 TIASASDDKTVKLWNRN 538 (577)
T ss_dssp CEEEEETTSEEEEECTT
T ss_pred EEEEEECcCEEEEEeCC
Confidence 99999999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=372.41 Aligned_cols=289 Identities=22% Similarity=0.363 Sum_probs=264.4
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+....+.+|.+.|++++|+|++++|+||+.|++|++||..+++....+..+...|.+++|+|++.++++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34567899999999999999999999999999999999999999888998999999999999999999999999999999
Q ss_pred CCcc------ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC--CCC
Q 016187 178 ADRA------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DST 249 (394)
Q Consensus 178 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 249 (394)
+... .....+.+|...|.+++|+|+++.|++++.|++|++||+.+++.+..+.+ |...+.++.++| ++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPSETGN 211 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECCCSSCC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEEeCCCCC
Confidence 8542 33456778999999999999999999999999999999999998888876 456799999987 568
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---CCCCEEEEE
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---HEDGVTCLM 326 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~ 326 (394)
++++|+.||+|++||+++++++..+..|...|.+++|+|++.+|++++.|++|++||++......... +...+.+++
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998754333322 234689999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
|+|++++|++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|++|+
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999995
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=381.56 Aligned_cols=304 Identities=21% Similarity=0.366 Sum_probs=269.3
Q ss_pred EEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC
Q 016187 90 FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169 (394)
Q Consensus 90 ~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 169 (394)
..|+.....+..++.+|.+.|++++|+|+|++|+||+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 34565666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcc-------ceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcC--CCCcccCe
Q 016187 170 DSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRG--HPYHTEGL 239 (394)
Q Consensus 170 d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~i 239 (394)
|+.+++|++... .....+.+|...+.++.|+|+ +..|++|+.|++|++||+.+++.+..+.. ...|...+
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 999999998642 234567899999999999996 45799999999999999999998877632 13467789
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc
Q 016187 240 TCLTISA-DSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD 317 (394)
Q Consensus 240 ~~~~~~~-~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 317 (394)
.++.+++ ++.++++|+.|++|++||++ .++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++........
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 9999977 88999999999999999998 457788899999999999999999999999999999999998764332221
Q ss_pred --------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe----ecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 318 --------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF----SGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 318 --------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
+...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++++|+|||.||+|
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 2234889999999999999999999999999999988877 6899999999999999999999999999
Q ss_pred EEEeccCC
Q 016187 386 RVFEIADF 393 (394)
Q Consensus 386 ~iw~~~~~ 393 (394)
++|++...
T Consensus 369 ~iW~~~~~ 376 (380)
T 3iz6_a 369 KIWAFSGH 376 (380)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 99998764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=362.37 Aligned_cols=290 Identities=20% Similarity=0.392 Sum_probs=263.8
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+......+.+|.+.|++++|+|+ +.+|+||+.|+++++||+.+++.+..+..|...|.+++|+|+|++|++|+.|+.|+
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred cchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 34567789999999999999995 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCc----eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 133 IWDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 133 vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+|++.+++ ....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 99998753 4566788999999999998875 889999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEEEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGF 286 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~v~~ 286 (394)
|+.|++|++||+++++....+.+ |...|++++|+|++.++++|+.|++|++||+++++.+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTG---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcC---CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence 99999999999999988888765 567899999999999999999999999999999988776643 3357999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+|++.+|++|+.|+.|++||+...... ...+|...|.+++|+|++.+|++|+.||.|++||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999998765443 3457999999999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-50 Score=358.06 Aligned_cols=291 Identities=23% Similarity=0.339 Sum_probs=260.2
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
+...+|.+|.+.|++++|+|+ +.+|+||+.|++|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 456789999999999999995 5789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD 212 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 212 (394)
|+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+++|+| ++.+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999876 45567889999999999999 67899999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
++|++||++++.....+... +...+..+.++| ++.++++|+.|++|++||+++++++..+.+|...|.+++|+|++
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp SEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence 99999999887765555432 456788888886 77899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSK--YVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~iwd~~ 349 (394)
++|++++.||+|++||+.+...... ..|...+.+++|+|++. ++++|+.|| +.+|++.
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 9999999999999999987655443 45778899999999875 577776554 6677654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=357.15 Aligned_cols=291 Identities=18% Similarity=0.318 Sum_probs=260.3
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+...++.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 44668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcC-CCCEEEEEe
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGS 255 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~ 255 (394)
+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+ ..+.+ |...|.+++|+| ++.++++|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC---CCSCEEEEEECTTCTTEEEEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc---cCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999887443 44444 567899999999 678999999
Q ss_pred CCCcEEEEECCCCcEEEEe-ccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCC
Q 016187 256 KDGSVHMVNITTGKVVSSL-VSHTDSIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~-~~h~~~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~ 331 (394)
.|++|++||++++.....+ ..|...+..+.|+| ++.+|++++.|++|++||+++.... ...+|...|.+++|+|++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence 9999999999887655544 35668899999987 6789999999999999999876543 345789999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC--EEEEEeCCCcEEEEeccC
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD--FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~s~dg~i~iw~~~~ 392 (394)
++|++|+.||.|++||+.++++++.+..|...+++++|+|++. ++++|+.|| +.+|++.+
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999999999999999999999999999999999999999875 578777666 77787764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=358.48 Aligned_cols=296 Identities=20% Similarity=0.323 Sum_probs=257.0
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-----CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-----~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
....|.||.+.|++++|+|.++.+|+||+.|+++++|++.. +..+..+.+|...|.+++|+|+|++|++|+.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 35568899999999999997778999999999999999864 2346788999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
|++||+.+++....+.+|...|.+++|+|++.++++|+.|++|++|+++. ..+..+.+|...|.+++|+|....
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~----- 162 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKA----- 162 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--------
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCC-----
Confidence 99999999999999999999999999999999999999999999999964 456677788888888888875420
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
.+++..+++++.|+.|++||+++++....+.+|...|.+++|+|++
T Consensus 163 ----------------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 163 ----------------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp -------------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred ----------------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 1234567778888888888888887778888999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee--------cccC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS--------GHRD 362 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--------~h~~ 362 (394)
.+|++++.|++|++||+..........+...|.+++|+|++.+|++++.+ .+++|++..+..+..+. .|..
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc
Confidence 99999999999999999887666666667889999999999999988754 59999998888777664 3466
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 363 AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 363 ~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+.+++|+|++++|++|+.||+|++|++.+
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 789999999999999999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=364.69 Aligned_cols=296 Identities=22% Similarity=0.364 Sum_probs=252.9
Q ss_pred eeeEeecCccc-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE---EecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 98 DWASEIQGHKD-SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 98 ~~~~~~~~h~~-~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
+++.++++|.+ .|++++|+|+|++||+|+.|++|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45678899998 999999999999999999999999999988764432 25789999999999999999999999999
Q ss_pred EEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
++|+.... +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++.....+.....|...|.+++|+|++.++
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 99998765 4567788999999999999999999999999999999998775433332223467789999999999999
Q ss_pred EEEeCCCcEEEEECCCCc--EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc----------------
Q 016187 252 LSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR---------------- 313 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------------- 313 (394)
++|+.|++|++||+.+++ +...+.+|...|.+++|+|++.+|++++.|++|++|+.......
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 999999999999998875 45678899999999999999999999999999999996321100
Q ss_pred ee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--------E-EEEeecccCceeEEEEccCC-CEEEEEeCC
Q 016187 314 ST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--------C-VRTFSGHRDAIQAISVSAHQ-DFLVSVSLD 382 (394)
Q Consensus 314 ~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--------~-~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d 382 (394)
.. ..|...|.+++|+|++.+|++++.|+.|++|+...+. . ...+.+|.+.|++|+|+|++ .+|||||.|
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence 01 1277889999999999999999999999999976542 1 22345899999999999997 499999999
Q ss_pred CcEEEEeccCC
Q 016187 383 GTARVFEIADF 393 (394)
Q Consensus 383 g~i~iw~~~~~ 393 (394)
|+|++|++...
T Consensus 326 g~v~~W~~~~~ 336 (345)
T 3fm0_A 326 GEVAFWKYQRP 336 (345)
T ss_dssp SCEEEEEECC-
T ss_pred CcEEEEEecCC
Confidence 99999998754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-50 Score=374.62 Aligned_cols=325 Identities=18% Similarity=0.275 Sum_probs=287.5
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc----CCCe------eeEeecC----------cccCEEEEEEcCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI----NQGD------WASEIQG----------HKDSVSSLAFSMDGQ 120 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~----~~~~------~~~~~~~----------h~~~V~~v~~s~~g~ 120 (394)
..|.++|++++|+|++..+||+|+.|+.+++|++ .+++ ....+.. |.+.|++++|+|+|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3466999999999965449999999999999999 8777 3444443 688999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC-------
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS------- 193 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~------- 193 (394)
+|++++.|+.|++|| .+++....+..|...|.+++|+|++++|++++.|+.+++|++.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 678888889999999999999999999999999999999999998888888777766
Q ss_pred --------eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 194 --------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 194 --------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+.+++|+|++ .+++++.||.|++||+.+++.+..+.. |...+.+++++|++.++++++.|+.|++||+
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG---HHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc---CCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 8899999875 588999999999999999887777664 5678999999999999999999999999999
Q ss_pred CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
.+++.+..+..|...|.+++|+|++ ++++++.|+.|++||+....... ...|...+.+++|+|++++|++|+.||.|+
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9999888898999999999999999 99999999999999998764443 345788999999999999999999999999
Q ss_pred EEECCCCe--------------------EEEEeecccC--ceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 345 VWDSLSGD--------------------CVRTFSGHRD--AIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 345 iwd~~~~~--------------------~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+||+.+++ ++..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999888 8899999976 99999999999999999999999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=350.08 Aligned_cols=296 Identities=24% Similarity=0.472 Sum_probs=266.4
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|.+.|++++|+|+ +.+||+|+.|+.+++|++.+++....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 346678899999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|+.+++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|++||+++++.+..+... +...+.+++++|+++++++++.|+.|++||+++++.+..+..|...+.+
T Consensus 173 i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------- 239 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC----------- 239 (312)
T ss_dssp EEEEETTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSC-----------
T ss_pred EEEEECCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEE-----------
Confidence 999999998887766432 4567899999999999999999999999999999888777665432211
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
+......+++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|+++
T Consensus 240 ---------------------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 240 ---------------------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp ---------------------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred ---------------------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence 11112235678999999999999999999999999999999999999999999
Q ss_pred EEEEEe--CCCcEEEEecc
Q 016187 375 FLVSVS--LDGTARVFEIA 391 (394)
Q Consensus 375 ~l~s~s--~dg~i~iw~~~ 391 (394)
+|++++ .|++|++|+.+
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 999997 69999999865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=355.94 Aligned_cols=291 Identities=21% Similarity=0.342 Sum_probs=263.6
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+......+.||.+.|++++|+|+ +.+||||+.|+++++||..+++....+..|...|.+++|+|+|.+|++|+.|+.++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred ccEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 34567889999999999999995 57899999999999999999998899999999999999999999999999999999
Q ss_pred EEeCCCC------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC--CCC
Q 016187 133 IWDPSSG------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP--DGK 204 (394)
Q Consensus 133 vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~ 204 (394)
+|++... .....+..|.+.|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+| +++
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9998643 24566778999999999999999999999999999999999999999999999999999987 578
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--CCCEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH--TDSIE 282 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--~~~i~ 282 (394)
+|++|+.||+|++||+++++.+..+.. |...|++++|+|++.++++|+.|++|++||+++++.+..+..+ ...+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFET---HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecC---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccccee
Confidence 999999999999999999998887765 5678999999999999999999999999999998877666543 35789
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+++|+|++.+|++++.|++|++||+.+.... ...+|...|++++|+|++++|++|+.||+|++|+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999765433 3457999999999999999999999999999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=356.92 Aligned_cols=292 Identities=22% Similarity=0.357 Sum_probs=253.5
Q ss_pred eeeEeecCcccCEEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 98 DWASEIQGHKDSVSSLAF-----SM-DGQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~-----s~-~g~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
+....+++|.+.|++++| ++ ++++|+||+.|++|++||+.++ .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345678999999999999 77 9999999999999999998753 3456788999999999999999999
Q ss_pred EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEE
Q 016187 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (394)
++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.. ...........|...+.++.+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999974 333333333356778999999
Q ss_pred cCCC----------CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcc
Q 016187 245 SADS----------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPR 313 (394)
Q Consensus 245 ~~~~----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~ 313 (394)
+|++ .++++++.|++|++|| ...+....+..|...|.+++|+|++.+|++++.|++|++||+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 9987 7899999999999999 45677778889999999999999999999999999999999943 3333
Q ss_pred eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--Eee-----------cccCceeEEEEccCCCEEEEEe
Q 016187 314 STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFS-----------GHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~~~~~~~l~s~s 380 (394)
....+...|.+++|+|+++++++| .|+.|++|++.+++... .+. +|...|++++|+|++++|++|+
T Consensus 250 ~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 250 REFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred eeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 444456679999999999887655 58889999998876543 443 7888999999999999999999
Q ss_pred CCCcEEEEeccC
Q 016187 381 LDGTARVFEIAD 392 (394)
Q Consensus 381 ~dg~i~iw~~~~ 392 (394)
.||+|++|++++
T Consensus 329 ~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 329 TDGVIRTFSFET 340 (343)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCceEEEEEEEc
Confidence 999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=357.26 Aligned_cols=300 Identities=23% Similarity=0.412 Sum_probs=251.2
Q ss_pred CceeeeeccCC-cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 55 DSTHIFSGHSD-EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 55 ~~~~~~~~h~~-~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.....+.+|.+ .|++++|+|+ +.+||||+.|++|+||++..++... ...+|...|++++|+|+|++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 34667889998 9999999995 6789999999999999998876442 23789999999999999999999999999
Q ss_pred EEEEeCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCeEEEEECCCCCe
Q 016187 131 VQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 131 i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
|++|+...+. ....+.+|...|.+++|+|++++|++|+.|++|++|++... ..+..+.+|...|.+++|+|++++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999988774 46678899999999999999999999999999999998765 345677899999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------
Q 016187 206 ICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--------------- 268 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--------------- 268 (394)
|++|+.|++|++||..+++. ...+.+ |...|++++|+|++++|++|+.|++|++|+....
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEG---HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecC---CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 99999999999999987653 344444 5678999999999999999999999999996321
Q ss_pred cEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----c------eeccCCCCEEEEEEeCCC-CEEEE
Q 016187 269 KVVSSLVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP----R------STCDHEDGVTCLMWLGTS-KYVVT 336 (394)
Q Consensus 269 ~~~~~~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~------~~~~~~~~v~~~~~~~~~-~~l~s 336 (394)
+++..+.. |...|.+++|+|++.+|++++.|+.|++|+...... . ....|...|++++|+|++ .+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 23445554 889999999999999999999999999999764321 1 123688999999999997 59999
Q ss_pred EeCCCeEEEEECCCCeEEEEee
Q 016187 337 GCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~~~~ 358 (394)
|+.||+|++|++.+++.+..+.
T Consensus 322 ~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 322 CSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EETTSCEEEEEECC--------
T ss_pred cCCCCcEEEEEecCCCCccccc
Confidence 9999999999998887665443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=362.41 Aligned_cols=284 Identities=26% Similarity=0.511 Sum_probs=255.0
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCC------------------CEEEEEEcCCCCEEEE
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG------------------GVEWVSWHPRGHIVLA 166 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~ 166 (394)
+|...|.+++|+|+|++||+|+ ++++++|++.+++.+..+..+.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999986 78999999999988877654432 3899999999999999
Q ss_pred ecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++++|
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~ 216 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVSP 216 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECS
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCcEEEEEEC
Confidence 9999999999999999899999999999999999999999999999999999999998776665 345799999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEe-------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-------
Q 016187 247 -DSTLALSGSKDGSVHMVNITTGKVVSSL-------VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL------- 311 (394)
Q Consensus 247 -~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~------- 311 (394)
++.++++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++.+|++++.|++|++||++...
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 8999999999999999999999888776 5789999999999999999999999999999986531
Q ss_pred ------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEcc------CCCEEEEE
Q 016187 312 ------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA------HQDFLVSV 379 (394)
Q Consensus 312 ------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~ 379 (394)
.....+|...|.+++|+|++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|++ ++++|+||
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 112346888999999999999999999999999999999999999999999999999986 68899999
Q ss_pred eCCCcEEEEeccCC
Q 016187 380 SLDGTARVFEIADF 393 (394)
Q Consensus 380 s~dg~i~iw~~~~~ 393 (394)
|.||+|++|++..+
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=410.83 Aligned_cols=337 Identities=24% Similarity=0.359 Sum_probs=304.8
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|.+.|++++|+|+ +.+||+|+.|++|++|++.+++.+..+.+|...|.+++|+|+|++|++++.|++|++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 345677899999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
|+.+++.+..+.+|...|.+++|+|+ +.++++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 99999999999999999999999994 5589999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCceEEEEcCC----------------------------------------------------CCcccCeE
Q 016187 213 ATLRVWNPKSGENIHVIRGH----------------------------------------------------PYHTEGLT 240 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~----------------------------------------------------~~~~~~i~ 240 (394)
|+|++||+.+++....+... ..|...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999999877654433210 13456788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---------
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--------- 311 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--------- 311 (394)
+++++|++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+++++|++....
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999964210
Q ss_pred -----------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC
Q 016187 312 -----------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD 362 (394)
Q Consensus 312 -----------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 362 (394)
......+...+.+++|+|+++++++|+.+|.|++|++.+++.+..+.+|..
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 000112345689999999999999999999999999999999999999999
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 363 AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 363 ~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|++++|+|++++|++++.||.|++|++..
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 999999999999999999999999999865
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-49 Score=361.51 Aligned_cols=305 Identities=17% Similarity=0.273 Sum_probs=237.9
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCce----EEEEecC
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL------DGLVQIWDPSSGNL----KCTLEGP 148 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~------d~~i~vwd~~~~~~----~~~~~~~ 148 (394)
++.+++++.....|++.... ..+|...|++++|||||++||+|+. |++|++|+..++.. .....+|
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp --------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred eEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 34455667888999976433 3579999999999999999999997 77899999877643 2344568
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee----eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN----MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
...|.+++|+|++. +++++.|++|++||+.+++... ...+|...|++++|+|++++|++|+.|++|++||+++++
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 88999999999976 5567889999999998765432 344799999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEEECCCC-CeEEEEeCCC
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIGFSRSS-PWAATGSMDQ 300 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~~~~~~-~~l~s~s~dg 300 (394)
.+..+.+ |...+++++|+|++. ++++++.|++|++||+++++.+..+ ..|...+.+++|+|++ .+|++|+.|+
T Consensus 173 ~~~~~~~---h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 173 VLKSYNA---HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp EEEEECC---CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred EEEEEcC---CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 8888765 567899999999874 7899999999999999998876554 3467789999999974 6889999999
Q ss_pred cEEEEeCCCCCcc-eeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEcc-CCCEEE
Q 016187 301 KLIIWDLQHSLPR-STCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA-HQDFLV 377 (394)
Q Consensus 301 ~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~ 377 (394)
.|++||++..... ....|...|++++|+|++ ++|++|+.||+|+|||+.++++++.+ +|.+.|++|+|+| ++.+|+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 9999999876443 345688899999999987 58999999999999999999888655 7999999999998 799999
Q ss_pred EEeCCCcEEEEeccC
Q 016187 378 SVSLDGTARVFEIAD 392 (394)
Q Consensus 378 s~s~dg~i~iw~~~~ 392 (394)
|||.||+|++|++..
T Consensus 329 s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 329 TVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEETTSCEEEEECC-
T ss_pred EEcCCCeEEEEECCC
Confidence 999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=352.63 Aligned_cols=322 Identities=20% Similarity=0.329 Sum_probs=283.9
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL- 141 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~- 141 (394)
|.++|++++|+|+ +.+++.+..++.+.+|............+|...|++++|+|++++|++++ |+.|++|++.+++.
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 5678999999995 56777777777766776555444445558999999999999999999999 99999999987653
Q ss_pred --EEEEe--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 142 --KCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 142 --~~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
...+. .+...|.+++|+|+++++++++.|+.|++|++.+++ ....+.+|...+.+++|+|++++|++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 23333 688899999999999999999999999999998776 566778899999999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 295 (394)
++||+++++.+..+.. |...+.+++++|++.++++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++
T Consensus 166 ~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQG---HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeec---ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999988777765 56789999999999999999999999999999998887764 7889999999999999999
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
++.++.|++||+..........|...+.+++|+|++++|++++.||.|++|++.+++.+.. ..|...|.+++|+|++++
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKY 320 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCE
Confidence 9999999999998877666778899999999999999999999999999999999988854 458889999999999999
Q ss_pred EEEEeCCCcEEEEecc
Q 016187 376 LVSVSLDGTARVFEIA 391 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~ 391 (394)
|++++.||.|++|++.
T Consensus 321 l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 321 IVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 9999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-49 Score=357.27 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=242.8
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-----------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-----------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.|...|.+++|+|+ +.+|++++ |+++++|+.... ........|...|.+++|+|++ +|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 56778999999995 56788776 778888873211 1112223467789999999985 7889999999
Q ss_pred EEEEeCCCCceEEE----EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-e
Q 016187 131 VQIWDPSSGNLKCT----LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-T 205 (394)
Q Consensus 131 i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~ 205 (394)
|+|||+.+++.... +.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++. +
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999998875433 458999999999999999999999999999999999999999999999999999999875 6
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
|++|+.|++|++||+++++....+... .+...+++++++|+ +.++++|+.||+|++||+++++++.++.+|...|.++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 899999999999999999887766432 24456899999995 5688999999999999999999999999999999999
Q ss_pred EECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeE
Q 016187 285 GFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 285 ~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~ 353 (394)
+|+|++ .+|++++.|++|+|||+.........+|...|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999997 589999999999999998887777788999999999999986 567899999999999876543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=393.23 Aligned_cols=329 Identities=13% Similarity=0.104 Sum_probs=274.1
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
....||.+.|++++|+|+ +.+||+|+.|++|++|+....+....+. |..+|++++|+| |++|++++.|++|++||+.
T Consensus 11 ~~~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEEEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 344589999999999995 6799999999999999998877766554 889999999999 8899999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-----------eeecccCcCeEEEEECCC-CCe
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-----------NMFSGHGSSVTCGDFTPD-GKT 205 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-----------~~~~~h~~~v~~~~~~~~-~~~ 205 (394)
+++.+..+. +.+.|++++|+|+++++++|+.||.|++||+.+++.. ..+.+|...|.+++|+|+ +..
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 999888886 5678999999999999999999999999999877643 334679999999999996 578
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEcCC---------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVIRGH---------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
|++|+.||.| +||+++++.+..+..+ ..|...|++++|+|++.++++|+.|++|++||++++++
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999999999 9999999888777654 22346799999999999999999999999999977654
Q ss_pred EEE--ec---c-------------CCCCEEEE------------------------------------------------
Q 016187 271 VSS--LV---S-------------HTDSIECI------------------------------------------------ 284 (394)
Q Consensus 271 ~~~--~~---~-------------h~~~i~~v------------------------------------------------ 284 (394)
+.. +. . |..+|.++
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 321 10 0 01111111
Q ss_pred --------------------------------------------------------------------------------
Q 016187 285 -------------------------------------------------------------------------------- 284 (394)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (394)
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence
Q ss_pred ------------------------------------EECCCCCeEEEEeCCCcEEEEeCCCCCcce---e---------c
Q 016187 285 ------------------------------------GFSRSSPWAATGSMDQKLIIWDLQHSLPRS---T---------C 316 (394)
Q Consensus 285 ------------------------------------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~---------~ 316 (394)
+|+|++++|++|+.|++|++||+....... . .
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 123456678888888888888887653221 0 1
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------------------------------------------
Q 016187 317 DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG--------------------------------------------- 351 (394)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--------------------------------------------- 351 (394)
+|...|.+++|+|++++||+|+.||+|++|++.++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 67789999999999999999999999999998765
Q ss_pred eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 352 DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+++..+.+|.+.|++|+|+||| +||+|+.|++|++||+..
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 3467888999999999999999 999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=351.62 Aligned_cols=291 Identities=21% Similarity=0.331 Sum_probs=240.3
Q ss_pred CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEE-ec-CCCCEEEEEEcCCCCEEEEecCCC
Q 016187 96 QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTL-EG-PGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 96 ~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
+.+++..+.+|.++|++++|+|+ +|++|+.|++|++||+.++. ....+ .+ |.+.|.+++|+|++++|++|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45667889999999999999997 99999999999999998753 44455 34 889999999999999999999999
Q ss_pred eEEEEeCCc-------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC----ceEEEEcCCCCcccCeE
Q 016187 172 TVWMWNADR-------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG----ENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 172 ~i~iw~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~i~ 240 (394)
+|++|+... .+.+..+.+|...|.+++|+|++++|++|+.|++|++||+... +.+..+.+ |...|.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~---h~~~v~ 157 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE---HSQDVK 157 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC---CSSCEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc---CCCceE
Confidence 999999853 3456678899999999999999999999999999999999432 33444544 567899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCC-----
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSL----- 311 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~----- 311 (394)
++.|+|++.+|++|+.|++|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++.|++|++||+....
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 9999999999999999999999998776 678889999999999999998 6789999999999999985431
Q ss_pred ---cce-ec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--EEEE-eecccC-ceeEEEEcc--CCCEEEEEe
Q 016187 312 ---PRS-TC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--CVRT-FSGHRD-AIQAISVSA--HQDFLVSVS 380 (394)
Q Consensus 312 ---~~~-~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~l~~~~--~~~~l~s~s 380 (394)
... .. .|...|.+++|++++ +|++|+.||.|++|+..+++ ++.. +.+|.. .|++++|+| ++++|+|||
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 111 11 378899999999654 89999999999999988774 3333 468887 899999999 789999999
Q ss_pred CCCcEEEEeccC
Q 016187 381 LDGTARVFEIAD 392 (394)
Q Consensus 381 ~dg~i~iw~~~~ 392 (394)
.||+|++|+++.
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=366.03 Aligned_cols=294 Identities=23% Similarity=0.401 Sum_probs=258.9
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....|.||.+.|++++|+|+ +.+|+||+.|++|++||+.+++....+.+|...|.+++|+|+|++|++|+.|+.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred EEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 456779999999999999995 5679999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCc-------eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee-----cccCcCeEEEEECC
Q 016187 135 DPSSGN-------LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGDFTP 201 (394)
Q Consensus 135 d~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~ 201 (394)
++.+.. ....+.+|.+.+.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 986532 234567899999999999974 57999999999999999998877666 67999999999987
Q ss_pred -CCCeEEEEeCCCcEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-
Q 016187 202 -DGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT- 278 (394)
Q Consensus 202 -~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~- 278 (394)
++++|++|+.|++|++||++. ++.+..+.+ |...|++++|+|++.++++|+.|++|++||+++++.+..+..+.
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 889999999999999999974 455666655 56789999999999999999999999999999999888776543
Q ss_pred ------CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-----ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 279 ------DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-----CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 279 ------~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
..|.+++|+|++.+|++|+.||.|++||+........ ..|...|++++|+|++++|++|+.||+|++|+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 2489999999999999999999999999876544322 36889999999999999999999999999999
Q ss_pred CCCCe
Q 016187 348 SLSGD 352 (394)
Q Consensus 348 ~~~~~ 352 (394)
+...+
T Consensus 373 ~~~~~ 377 (380)
T 3iz6_a 373 FSGHR 377 (380)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 76543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=360.04 Aligned_cols=291 Identities=18% Similarity=0.221 Sum_probs=244.0
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecC------CCeEEEEEcCCCeee----EeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGG------DDKGFFWRINQGDWA----SEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~------d~~v~~w~~~~~~~~----~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
..+|...|++|+|+|+ +.+||||+. |+.+++|+..++... ....+|...|++++|+|+++ +++++.|+
T Consensus 38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 3579999999999995 678999987 778999998776543 34457999999999999985 55688899
Q ss_pred cEEEEeCCCCceE----EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-
Q 016187 130 LVQIWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK- 204 (394)
Q Consensus 130 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 204 (394)
+|+|||+.+++.. ....+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999999887643 23457889999999999999999999999999999999999999999999999999999875
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
++++++.||+|++||+++++....+... .+...+++++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|.+
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 7899999999999999988766544332 34567999999997 468889999999999999999999999999999999
Q ss_pred EEECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeE
Q 016187 284 IGFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG-TSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 284 v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
++|+|++ .+||+++.|++|+|||+++.......+|...|++++|+| ++.+|++|+.||+|++|++.+...
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 9999987 589999999999999999887777778999999999998 789999999999999999865433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=353.03 Aligned_cols=294 Identities=19% Similarity=0.243 Sum_probs=239.3
Q ss_pred EEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CceEEEEecCCCCEEEEEE
Q 016187 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-----------GNLKCTLEGPGGGVEWVSW 157 (394)
Q Consensus 89 v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~ 157 (394)
.+.|++.... ...|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|
T Consensus 16 ~r~w~~~~~~----~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNA----PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCS----CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCC----cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 3567765432 245777899999999999999888 77888887321 0111122234567999999
Q ss_pred cCCCCEEEEecCCCeEEEEeCCccceee----eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 158 HPRGHIVLAGSEDSTVWMWNADRAAYLN----MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 158 ~~~~~~l~~~s~d~~i~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
+|++ .+++|+.||+|++||+.+++.+. ...+|...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-- 167 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-- 167 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC--
Confidence 9985 67899999999999998876543 3458999999999999999999999999999999999998888876
Q ss_pred CcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCC
Q 016187 234 YHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~ 309 (394)
|...|++++|+|++ .++++|+.|++|++||+++++.+..+. .|...+.+++|+|+ +.+|++|+.|++|++||+++
T Consensus 168 -h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 168 -HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp -CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred -cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 56789999999988 478999999999999999998887764 35567999999985 56889999999999999987
Q ss_pred CCcc-eeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEeCCCcEE
Q 016187 310 SLPR-STCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTAR 386 (394)
Q Consensus 310 ~~~~-~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~ 386 (394)
.... ....|...|++++|+|++ ++|++|+.||+|+|||+.+++++ .+.+|.+.|++|+|+|+++ +|+|||.||+|+
T Consensus 247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 6544 455789999999999997 58999999999999999998866 5789999999999999986 577999999999
Q ss_pred EEeccC
Q 016187 387 VFEIAD 392 (394)
Q Consensus 387 iw~~~~ 392 (394)
+|++.+
T Consensus 326 ~w~v~~ 331 (344)
T 4gqb_B 326 HHVVPT 331 (344)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=349.59 Aligned_cols=291 Identities=23% Similarity=0.375 Sum_probs=246.9
Q ss_pred CceeeeeccCCcEEEEEE-----cCCCCcEEEEecCCCeEEEEEcCCC-------eeeEeecCcccCEEEEEEcCCCCEE
Q 016187 55 DSTHIFSGHSDEVYSVAC-----SPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQLL 122 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~-----~p~~~~~lasg~~d~~v~~w~~~~~-------~~~~~~~~h~~~V~~v~~s~~g~~l 122 (394)
.....+.||++.|++++| +|.++.+||||+.|++|++|++... .....+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 346778999999999999 7756789999999999999998643 4566789999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee--eecccCcCeEEEEEC
Q 016187 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFT 200 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~ 200 (394)
++|+.|++|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+....... ...+|...|.+++|+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeec
Confidence 999999999999999999999999999999999999999999999999999999997433222 123788999999999
Q ss_pred CCC----------CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc
Q 016187 201 PDG----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GK 269 (394)
Q Consensus 201 ~~~----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~ 269 (394)
|++ .+|++++.|++|++||. ..+....+.+ |...|++++|+|++++|++|+.|++|++||+.. ..
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 987 78999999999999994 4555555554 567899999999999999999999999999954 33
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--e------------ccCCCCEEEEEEeCCCCEEE
Q 016187 270 VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--T------------CDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 270 ~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~------------~~~~~~v~~~~~~~~~~~l~ 335 (394)
....+ .+...|.+++|+|++.+++++ .|+.+++|++.+..... . .+|...+.+++|+|++++|+
T Consensus 248 ~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 248 PQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp CSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred cceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 33333 355679999999999887755 58889999987543221 1 15777899999999999999
Q ss_pred EEeCCCeEEEEECCCC
Q 016187 336 TGCVDGKVRVWDSLSG 351 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~ 351 (394)
+|+.||.|++|++.++
T Consensus 326 sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 326 AGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEETTSEEEEEEEEEE
T ss_pred EecCCceEEEEEEEcc
Confidence 9999999999997654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-48 Score=348.69 Aligned_cols=288 Identities=22% Similarity=0.352 Sum_probs=238.2
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC--eeeEee-cC-cccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEI-QG-HKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~--~~~~~~-~~-h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
....+.+|.++|++++|+|+ +||||+.|++|++|++..+ +....+ .+ |.+.|++++|+|++++|++|+.|++|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 46778999999999999984 8999999999999999875 445555 44 99999999999999999999999999
Q ss_pred EEEeCCC-------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc----cceeeeecccCcCeEEEEEC
Q 016187 132 QIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 132 ~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~ 200 (394)
++|++.. .+....+.+|...|.+++|+|++++|++|+.|++|++||+.. .+.+..+.+|...|.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999853 345677889999999999999999999999999999999943 24567788999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCC--ceEEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--------
Q 016187 201 PDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG-------- 268 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~-------- 268 (394)
|++++|++|+.|++|++||..++ +++..+.+ |...|.++.|+|+ +.++++|+.|++|++||+..+
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 99999999999999999998766 45556654 5678999999998 678999999999999998754
Q ss_pred cEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--c--eeccCCC-CEEEEEEeC--CCCEEEEEeCC
Q 016187 269 KVVSSLVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP--R--STCDHED-GVTCLMWLG--TSKYVVTGCVD 340 (394)
Q Consensus 269 ~~~~~~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~--~~~~~~~-~v~~~~~~~--~~~~l~sg~~d 340 (394)
.....+.. |...|.+++|++++ +|++++.||+|++|+...... . ....|.. .|.+++|+| ++++|++|+.|
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 34445554 89999999999765 899999999999999865421 1 1235766 899999999 68999999999
Q ss_pred CeEEEEECCC
Q 016187 341 GKVRVWDSLS 350 (394)
Q Consensus 341 g~i~iwd~~~ 350 (394)
|.|++|++.+
T Consensus 319 g~v~~W~~~~ 328 (330)
T 2hes_X 319 GIVNFWSLEK 328 (330)
T ss_dssp SEEEEEEC--
T ss_pred CcEEEEEecc
Confidence 9999999764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-50 Score=373.19 Aligned_cols=330 Identities=10% Similarity=0.154 Sum_probs=284.1
Q ss_pred cCCcEEEEEEcCCCCcEEEEe----------cCCCeEEEEEcCCCe---eeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 63 HSDEVYSVACSPTDATLVATG----------GGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg----------~~d~~v~~w~~~~~~---~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
+...|.+++|+|++..+||+| +.|+.+++|++.+++ .+..+ .|...|++++|+|++++|++|+.|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345788999999766699999 899999999998875 33333 5899999999999999999999999
Q ss_pred cEEEEeCCC----CceEEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccc------ee---eeecccCcCeE
Q 016187 130 LVQIWDPSS----GNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA------YL---NMFSGHGSSVT 195 (394)
Q Consensus 130 ~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~------~~---~~~~~h~~~v~ 195 (394)
.|++|++.+ .+....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+.+ .. ..+.+|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 3577788899999999999998 8899999999999999998765 22 23467999999
Q ss_pred EEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCC---CcccCeEEEEEcCCC-CEEEEEeCCC---cEEEEECCC
Q 016187 196 CGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHP---YHTEGLTCLTISADS-TLALSGSKDG---SVHMVNITT 267 (394)
Q Consensus 196 ~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~g~~dg---~i~i~d~~~ 267 (394)
+++|+|+ +.+|++++.||.|++||+++++.+..+..+. .|...+.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999998 7899999999999999999998887776532 126789999999997 6899999998 999999998
Q ss_pred C-cEEEEec-cCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCC-CEEEEEeCCCe
Q 016187 268 G-KVVSSLV-SHTDSIECIGFSR-SSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTS-KYVVTGCVDGK 342 (394)
Q Consensus 268 ~-~~~~~~~-~h~~~i~~v~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~sg~~dg~ 342 (394)
+ +++..+. .|...|.+++|+| ++.+|++++.|++|++||+.+..... ...|...|.+++|+|++ .+|++++.||.
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6 5667777 8999999999999 89999999999999999998765443 34688899999999998 89999999999
Q ss_pred EEEEECCCCeEEEEee-----------------------------------cccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 343 VRVWDSLSGDCVRTFS-----------------------------------GHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 343 i~iwd~~~~~~~~~~~-----------------------------------~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
|++|++.++....... .|..++.+++|+|++++|++++.||+|+|
T Consensus 330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence 9999988765432211 16778889999999999999999999999
Q ss_pred EeccCC
Q 016187 388 FEIADF 393 (394)
Q Consensus 388 w~~~~~ 393 (394)
|++..-
T Consensus 410 w~~~~~ 415 (416)
T 2pm9_A 410 TNPKIS 415 (416)
T ss_dssp BCCCCC
T ss_pred EEeccC
Confidence 998753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=360.27 Aligned_cols=324 Identities=13% Similarity=0.224 Sum_probs=281.4
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.+++++|+|+ +.+|++|+.|+.+++|++.+++....+..| ..+....|+|++++|++|+.|+.|++||+.+++....+
T Consensus 58 ~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 3457899996 556889999999999999988877777777 45566688999999999999999999999999888888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
..|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 89999999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred EEEEcCCCCcccCeEEEEE---------------------cCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCCEEE
Q 016187 226 IHVIRGHPYHTEGLTCLTI---------------------SADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIEC 283 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~---------------------~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~ 283 (394)
+..+..+..+...+.++.+ +|+++++++|+.||.|++||+++++.+..+. .|...|.+
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 8888766555555555554 7889999999999999999999998777764 47889999
Q ss_pred EEECCCCC-eEEEEeCCCcEEEEeCCCCCc--ceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------
Q 016187 284 IGFSRSSP-WAATGSMDQKLIIWDLQHSLP--RSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG-------- 351 (394)
Q Consensus 284 v~~~~~~~-~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-------- 351 (394)
++|+|++. +|++++.||.|++||++.... ..... |...+.++.+ +++++|++++.||.|++|++...
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 374 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIE 374 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence 99999999 999999999999999987532 23333 6677888755 57889999999999999998763
Q ss_pred -eEEEEeecccCceeEEEEccCCC---EEEEEeCCCcEEEEeccC
Q 016187 352 -DCVRTFSGHRDAIQAISVSAHQD---FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 352 -~~~~~~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iw~~~~ 392 (394)
.....+.+|.+.|.+++|+|+++ .+++++.+|.+++|++++
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22335678899999999999999 788888999999999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=341.75 Aligned_cols=295 Identities=22% Similarity=0.349 Sum_probs=260.6
Q ss_pred CCCeeeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCCCEEEEEEcCCCCEEEEec
Q 016187 95 NQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (394)
Q Consensus 95 ~~~~~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~s 168 (394)
++.++..+|+||.+.|++|+|+|+ +++|+|||.|++|+|||+.+++ ....+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344566789999999999999998 6899999999999999987654 3567788999999999999999999999
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
.|+.+++|+............+...+....+++++++|++++.|+.+++||+......... ...|...+.++.+++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ--DESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC--SSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE--eccccCcccceEEccCC
Confidence 9999999999988888888888889999999999999999999999999998765543322 23467789999998864
Q ss_pred --CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEE
Q 016187 249 --TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLM 326 (394)
Q Consensus 249 --~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 326 (394)
.++++++.|+.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|++|++||+..........+...+.++.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 263 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 263 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence 578899999999999999999999999999999999999999999999999999999999877666667778899999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEee---------cccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS---------GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+|++. +++++.|+.|++||+.++.++..+. +|...|++++|+|++++|+||+.||+|+||++.+
T Consensus 264 ~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 264 FSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred cCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999875 4566679999999999888776654 6889999999999999999999999999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=369.97 Aligned_cols=335 Identities=19% Similarity=0.304 Sum_probs=287.4
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCccc---CEEEEEEcCC-CCEEEEEeCCCc
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMD-GQLLASGGLDGL 130 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~---~V~~v~~s~~-g~~l~t~s~d~~ 130 (394)
.....+.+|.+.|++++|+|++..++++|+.|+.+++|++.+++.+..+.+|.. .|++++|+|+ +++|++++.|+.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 356677899999999999997666899999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEEeCCCCceEEEE-e---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc----CcCeEEEEECCC
Q 016187 131 VQIWDPSSGNLKCTL-E---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----GSSVTCGDFTPD 202 (394)
Q Consensus 131 i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h----~~~v~~~~~~~~ 202 (394)
|++||+.+++.+..+ . .|...|.+++|+ ++.++++++.|+.|++|++.+++.+..+..+ ...+.++.|. +
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-G 308 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-E
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-C
Confidence 999999999998888 5 889999999999 9999999999999999999998888877766 3677788885 8
Q ss_pred CCeEEEEeCCCcEEEEcCCCCceEEEEcCCC------------------------------CcccCeEEEEEc-------
Q 016187 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHP------------------------------YHTEGLTCLTIS------- 245 (394)
Q Consensus 203 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------~~~~~i~~~~~~------- 245 (394)
++++++++.||.|++||+.+++.+..+.+|. .|...+.++.++
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~ 388 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 388 (615)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence 8999999999999999998766655554321 122223333331
Q ss_pred ---------------------------CC--------------------------------------CCEEEEEeC-CCc
Q 016187 246 ---------------------------AD--------------------------------------STLALSGSK-DGS 259 (394)
Q Consensus 246 ---------------------------~~--------------------------------------~~~l~~g~~-dg~ 259 (394)
|+ +.++++++. |+.
T Consensus 389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 468 (615)
T ss_dssp EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSC
T ss_pred EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCe
Confidence 11 455666666 777
Q ss_pred EEEEECCCCcEE-EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-c-CCCCEEEEEEeC-------
Q 016187 260 VHMVNITTGKVV-SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-D-HEDGVTCLMWLG------- 329 (394)
Q Consensus 260 i~i~d~~~~~~~-~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~------- 329 (394)
|++||+.+++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.+....... . |...|++++|+|
T Consensus 469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence 777777766554 566779999999999999999999999999999999876554443 3 889999999999
Q ss_pred ---CCCEEEEEeCCCeEEEEECCCC-eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 330 ---TSKYVVTGCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 330 ---~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
++++|++|+.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||+|++|+++.
T Consensus 549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 78889999999999999999999 99999999999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=365.55 Aligned_cols=335 Identities=17% Similarity=0.237 Sum_probs=278.0
Q ss_pred CceeeeeccCCc-EEEEEEcC--CCCcEEEEecCCCeEEEEEcCCC--------eeeEeecCccc---------------
Q 016187 55 DSTHIFSGHSDE-VYSVACSP--TDATLVATGGGDDKGFFWRINQG--------DWASEIQGHKD--------------- 108 (394)
Q Consensus 55 ~~~~~~~~h~~~-v~~~~~~p--~~~~~lasg~~d~~v~~w~~~~~--------~~~~~~~~h~~--------------- 108 (394)
.....+.+|.+. |++++|+| + +.+||+|+.|+.+++|++.++ +....+.+|..
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 567888999999 99999999 6 568999999999999999643 44444444444
Q ss_pred -----------------------------CEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCC---CEEEE
Q 016187 109 -----------------------------SVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGG---GVEWV 155 (394)
Q Consensus 109 -----------------------------~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~ 155 (394)
.|.+++|+|+++ +|++++.|+.|++||+.+++....+..|.. .|.++
T Consensus 133 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred EeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence 455555555554 677888889999999999999999999988 99999
Q ss_pred EEcCC-CCEEEEecCCCeEEEEeCCccceeeee-c---ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 156 SWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMF-S---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 156 ~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
+|+|+ ++++++++.|+.|++||+.+++.+..+ . +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 99999 999999999999999999999988888 6 899999999999 99999999999999999999998888776
Q ss_pred CC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC--------------------
Q 016187 231 GH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-------------------- 289 (394)
Q Consensus 231 ~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-------------------- 289 (394)
.+ ......+.++.++ ++.++++++.|+.|++||+.+++.+..+..|...|.+++| |+
T Consensus 292 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~ 369 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQ 369 (615)
T ss_dssp CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEEC
T ss_pred CCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcC
Confidence 54 2234567777775 8999999999999999999988888888777766666665 43
Q ss_pred -------------CCeEEEEeCCC--------------------------------------------------------
Q 016187 290 -------------SPWAATGSMDQ-------------------------------------------------------- 300 (394)
Q Consensus 290 -------------~~~l~s~s~dg-------------------------------------------------------- 300 (394)
+.++++++.|+
T Consensus 370 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (615)
T 1pgu_A 370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 449 (615)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred cccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCc
Confidence 34444444444
Q ss_pred ------------------cEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-
Q 016187 301 ------------------KLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG- 359 (394)
Q Consensus 301 ------------------~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~- 359 (394)
.|++||+..... .....|...|++++|+|++++|++|+.||.|++||+.+++++..+.+
T Consensus 450 ~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 529 (615)
T 1pgu_A 450 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 529 (615)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred eEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC
Confidence 444444433222 22345778899999999999999999999999999999999999988
Q ss_pred ccCceeEEEEcc----------CCCEEEEEeCCCcEEEEeccCC
Q 016187 360 HRDAIQAISVSA----------HQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 360 h~~~v~~l~~~~----------~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|...|++++|+| ++++|++++.||.|++|++...
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999 9999999999999999998764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=350.59 Aligned_cols=319 Identities=26% Similarity=0.518 Sum_probs=288.1
Q ss_pred ceeeeeccCCcE-EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v-~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
....+.+|.+.| .++.++ +.+|++|+.|+++++|++.+++.+..+.+|...|.+++|+ +++|++|+.|++|++|
T Consensus 110 ~~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eeEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 456789999875 665553 4689999999999999999999999999999999999998 5699999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|+.+++....+.+|...|.+++|+ ++.+++|+.|+.|++||+.+++.+..+.+|...+.+++| +++++++|+.||.
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 999999999999999999999996 568999999999999999999999999999999999999 7889999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|++||+++++.+..+.+ |...+.++.+ ++.++++|+.|+.|++||+++++.+..+..|...+.++.++ +.+++
T Consensus 261 i~iwd~~~~~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQG---HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp EEEEEGGGTEEEEEECC---CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEeEEecC---CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEE
Confidence 99999999988887765 4567999988 78999999999999999999999999999999999998875 56999
Q ss_pred EEeCCCcEEEEeCCCCCcceec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----ecccCcee
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-----SGHRDAIQ 365 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~ 365 (394)
+++.||.|++||+.+....... .|...|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|+
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEE
Confidence 9999999999999876554433 277889999995 589999999999999999999999888 47889999
Q ss_pred EEEEccCCCEEEEEeCCCc----EEEEeccC
Q 016187 366 AISVSAHQDFLVSVSLDGT----ARVFEIAD 392 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s~dg~----i~iw~~~~ 392 (394)
+++|+|++.++++|+.||+ |.+||+..
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999998 99999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=352.19 Aligned_cols=321 Identities=20% Similarity=0.368 Sum_probs=283.4
Q ss_pred ceeeeeccCCcE-EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v-~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
....+.+|.+.| .++++++ .+|++|+.|++|++||+.+++.+..+.+|.+.|++++|+|++ +|++|+.|++|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 456789999885 6777743 589999999999999999999999999999999999999988 99999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEc--CCCCEEEEecCCCeEEEEeCCccce-----------------------eeeecc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADRAAY-----------------------LNMFSG 189 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~s~d~~i~iw~~~~~~~-----------------------~~~~~~ 189 (394)
|+.+++....+.+|.+.|.+++|+ ++++++++|+.|+.|++|++.+... ...+.+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999998 4678999999999999999876542 445678
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 269 (394)
|...+.++ ++++++|++|+.||.|++||+++++.+..+.+ |...+.++.++|++.++++|+.||.|++||+.+++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 88888876 67889999999999999999999998887765 56789999999999999999999999999999999
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 270 VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 270 ~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
++..+..|...|.+++++ +.++++++.||+|++||+..........+...+..++|++++++|++|+ ||.|++||+.
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 999999999999999998 5799999999999999998876665566777788899999999999998 9999999999
Q ss_pred CCeEEEE-eecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 350 SGDCVRT-FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 350 ~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++++. +.+|...|++++|+ ...++++++.||.+.+|-
T Consensus 421 ~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 421 SGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999986 67899999999997 345555666677655543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-46 Score=370.59 Aligned_cols=294 Identities=22% Similarity=0.379 Sum_probs=258.3
Q ss_pred eeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 99 WASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
....+++|.+.|++|+|+|++ ++|+||+.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345688999999999999875 79999999999999998764 345678899999999999999999999999999
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC--CE
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS--TL 250 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~ 250 (394)
|++||+.++...+.+.+|...|.+++|+|++++|++|+.|++|++||+..............|...|.+++|+|++ ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 9999999999999999999999999999999999999999999999987654443333344577889999999987 58
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
+++|+.|++|++||++++++...+.+|...|.+++|+|++.+|++++.|++|++||+.+........+...+.+++|+|+
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999988766666666778999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeeccc-------------------CceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR-------------------DAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.+|++++ ++.|++||+.+++++..+..+. ..+++++|+|++++|+||+.||+|++|++.
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 98887765 6669999999999988775432 137899999999999999999999999997
Q ss_pred CC
Q 016187 392 DF 393 (394)
Q Consensus 392 ~~ 393 (394)
.|
T Consensus 693 ~~ 694 (694)
T 3dm0_A 693 RY 694 (694)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=372.79 Aligned_cols=325 Identities=14% Similarity=0.065 Sum_probs=251.5
Q ss_pred cCCcEEEEEEcCCC-C-------cEEEE-------------------ecCCCeEEEEEcCCCeee----EeecCcccCEE
Q 016187 63 HSDEVYSVACSPTD-A-------TLVAT-------------------GGGDDKGFFWRINQGDWA----SEIQGHKDSVS 111 (394)
Q Consensus 63 h~~~v~~~~~~p~~-~-------~~las-------------------g~~d~~v~~w~~~~~~~~----~~~~~h~~~V~ 111 (394)
+.+.|++++|+|.+ + ++||+ ++.|++|+||++.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57789999999864 1 45544 668899999999877642 34677889999
Q ss_pred EEEEcCC------CCEEEEEeCCCcEEEEeCCCCce-----------EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 112 SLAFSMD------GQLLASGGLDGLVQIWDPSSGNL-----------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 112 ~v~~s~~------g~~l~t~s~d~~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
+++|+|+ +.+||+++.|++|++||+.+++. ...+.+|...|++++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999997 57999999999999999987642 2467788999999999986 4899999999999
Q ss_pred EEeCCccc-eeeeecccCcCeEEE--EECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 175 MWNADRAA-YLNMFSGHGSSVTCG--DFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 175 iw~~~~~~-~~~~~~~h~~~v~~~--~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
+||++++. ....+.+|...|.++ +|+|++ ++|+||+.|++|+|||+++++.+..+.++. ....+.+++|+|++..
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~ 369 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYS 369 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCe
Confidence 99998763 445678999999999 578888 899999999999999999877655554432 1124778999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-----cCCCCEEEE
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-----DHEDGVTCL 325 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~ 325 (394)
+++++.|++|++||+++++++.++.+|...|.+++|+|++++|++|+.|++|++||+......... .+...+.++
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v 449 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKW 449 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEEC
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEe
Confidence 999999999999999999988888899999999999999999999999999999998654322211 111246789
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEC-CCCeEEEEeecccCceeEEEEccCCC---EEEEEeCCCcEEEEeccC
Q 016187 326 MWLGTSKYVVTGCVDGKVRVWDS-LSGDCVRTFSGHRDAIQAISVSAHQD---FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 326 ~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iw~~~~ 392 (394)
+|+|+++.+. ... .+++|+. .++.++..+.+|...|++|+|+|+++ .+|+|+.||+||||++..
T Consensus 450 ~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 450 DYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp BCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999998552 222 3334433 25778889999999999999999965 999999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=334.89 Aligned_cols=292 Identities=26% Similarity=0.468 Sum_probs=255.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-----eeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-----~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
...+|.||++.|++|+|+|+++.+|||||.|++|+|||+...+ ....+.+|...|.+++|+|+|++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3456899999999999999878899999999999999987643 45678999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEECCCC--CeEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDG--KTIC 207 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~--~~l~ 207 (394)
|++|+............+...+....+++.+.++++++.|+.+++|+..... ......+|...+.+++|++++ .+++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 9999999998888888888899999999999999999999999999987654 344567899999999999864 5788
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
+++.|+.|++||+++++.+..+.+ |...|++++|+|+++++++|+.|++|++||+++.+.+..+.. ...|.++.|+
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~ 265 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFS 265 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEEC
T ss_pred EEcCCCEEEEEECCCCceeeEecC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecC
Confidence 999999999999999988877765 567899999999999999999999999999999998888764 4689999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcce----------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRS----------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
|++.++ +++.|+.|++||++...... ...|...|++++|+|++++|++|+.||.|+|||+.+|+
T Consensus 266 ~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 266 PNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 987655 56679999999997643221 23578889999999999999999999999999999885
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-46 Score=343.87 Aligned_cols=287 Identities=25% Similarity=0.445 Sum_probs=250.3
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCccc------------------CEEEEEEcCCCCEE
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD------------------SVSSLAFSMDGQLL 122 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~------------------~V~~v~~s~~g~~l 122 (394)
.+|.+.|++++|+|+ +.+||+|+ ++++++|++.+++.+..+.+|.. .|++++|+|+|++|
T Consensus 61 ~~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 479999999999995 56888876 78999999999998888776542 49999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-
Q 016187 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP- 201 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~- 201 (394)
++|+.|++|++||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||+.+++....+. +...+.+++|+|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999888776664 556799999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--------- 268 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--------- 268 (394)
++++|++|+.|++|++||+++++.+..+... ..|...|.+++|+|++.++++|+.|++|++||+++.
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 8999999999999999999998877666321 246778999999999999999999999999999753
Q ss_pred ---cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeC------CCCEEEEEe
Q 016187 269 ---KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLG------TSKYVVTGC 338 (394)
Q Consensus 269 ---~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~------~~~~l~sg~ 338 (394)
.+...+.+|...|.+++|+|++.+|++++.|++|++||+.+..... ..+|...|.+++|++ ++++|++|+
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 3456778899999999999999999999999999999998765443 457999999999986 678999999
Q ss_pred CCCeEEEEECCC
Q 016187 339 VDGKVRVWDSLS 350 (394)
Q Consensus 339 ~dg~i~iwd~~~ 350 (394)
.||+|++|++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999998643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=380.62 Aligned_cols=325 Identities=14% Similarity=0.195 Sum_probs=266.6
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
..|...|++++|+| + .+|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+.+++
T Consensus 55 ~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp CSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 35888999999999 4 489999999999999999999888886 77899999999999999999999999999999887
Q ss_pred eE-----------EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeeccc------------------
Q 016187 141 LK-----------CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGH------------------ 190 (394)
Q Consensus 141 ~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h------------------ 190 (394)
.. ..+.+|.++|.+++|+|+ +..+++|+.|+.+ +||+++++.++.+.+|
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 53 123568889999999996 4689999999999 9999998887777655
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE--Ec---CC---------------------------C-----
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--IR---GH---------------------------P----- 233 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~---~~---------------------------~----- 233 (394)
...|.+++|+|+|++|++|+.||+|++||+++++.+.. +. .+ +
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 57799999999999999999999999999876554321 00 00 0
Q ss_pred ------------------------------------------------------------------C----c--------
Q 016187 234 ------------------------------------------------------------------Y----H-------- 235 (394)
Q Consensus 234 ------------------------------------------------------------------~----~-------- 235 (394)
. +
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 0 0
Q ss_pred ------------------------------ccCeEEEE----------------------------------EcCCCCEE
Q 016187 236 ------------------------------TEGLTCLT----------------------------------ISADSTLA 251 (394)
Q Consensus 236 ------------------------------~~~i~~~~----------------------------------~~~~~~~l 251 (394)
...+++++ ++|+++++
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 00111111 24667788
Q ss_pred EEEeCCCcEEEEECCCCcE-----EE-Eec-----cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---------
Q 016187 252 LSGSKDGSVHMVNITTGKV-----VS-SLV-----SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--------- 311 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~-----~~-~~~-----~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--------- 311 (394)
++|+.|++|++||+.++.. +. .+. +|...|.+++|+|++++||+|+.||+|+||++.+..
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 9999999999999877642 11 111 788999999999999999999999999999986441
Q ss_pred -------------------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 312 -------------------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 312 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
......|...|++++|+|+| +||+|+.|++|++||+.++..+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 11223588999999999999 9999999999999999888776
Q ss_pred E-----Eee-cccCceeEEEEc-----cCC---CEEEEEeCCCcEEEEec
Q 016187 355 R-----TFS-GHRDAIQAISVS-----AHQ---DFLVSVSLDGTARVFEI 390 (394)
Q Consensus 355 ~-----~~~-~h~~~v~~l~~~-----~~~---~~l~s~s~dg~i~iw~~ 390 (394)
. .+. +|.+.|++|+|+ ||+ ++|++|+.|++|++|++
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 4 233 899999999999 885 89999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=390.84 Aligned_cols=334 Identities=23% Similarity=0.383 Sum_probs=291.9
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~ 132 (394)
.....+.+|.+.|.+++|+|+ +.+||+|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.|+.|+
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred CEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 456678899999999999995 57899999999999999999999999999999999999999 556899999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee--------------------------
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-------------------------- 186 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~-------------------------- 186 (394)
+||+.+++....+.+|.+.|.+++|+|+++++++++.|+.|++||+.++.....
T Consensus 727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 999999999999999999999999999999999999999999999865532221
Q ss_pred -----------------------------ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc
Q 016187 187 -----------------------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 187 -----------------------------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 237 (394)
..+|...+.+++|+|+++++++++.||.|++||+.+++.+..+.+ |..
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h~~ 883 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG---HLS 883 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC---CSS
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC---Ccc
Confidence 126788899999999999999999999999999998887776654 345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE-----------------------------------------------------
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVN----------------------------------------------------- 264 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d----------------------------------------------------- 264 (394)
.|++++|+|++.++++++.|++|++|+
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 566666666666666666666666665
Q ss_pred --------------------------CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccC
Q 016187 265 --------------------------ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH 318 (394)
Q Consensus 265 --------------------------~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 318 (394)
+.+++.+..+..|...|.+++|+|+++++++++.||.|++||+.+........|
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 444555566677999999999999999999999999999999988776667788
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
...+.++.|+|++ .+++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|++|++...
T Consensus 1044 ~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1044 QETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp SSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred CCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 9999999999965 6788999999999999999999999999999999999999999999999999999998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=371.79 Aligned_cols=335 Identities=21% Similarity=0.304 Sum_probs=293.4
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
...+.|.+|.+.|.+++|+|+ +.+||+|+.|+.|++|++.+++.+..+.+|..+|++++|+|+|++|++++.|+.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 346788999999999999995 6788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD 212 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 212 (394)
|+.+++....+.+|.+.|.+++|+|++++|++++.|+.|++|++.++ .....+.+|...|.+++|+| +++.|++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999876 66778889999999999999 88999999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
|+|++||+.+++....+..+ +...+.+++++| ++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++
T Consensus 163 g~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp SEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 99999999888776666543 346789999999 99999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCeE----------E----
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKY-VVTGCVDGKVRVWDSLSGDC----------V---- 354 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~iwd~~~~~~----------~---- 354 (394)
+++++++.||.|++||+.+..... ...|...+.+++|+|++.. +++.+.++.+.+|++..... +
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECc
Confidence 999999999999999998765443 3456788999999999873 24445577788888654321 1
Q ss_pred -----------------------------EEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 355 -----------------------------RTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 355 -----------------------------~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+..+...+.+++|+|+++++++++ ||.+.+|++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 321 KNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp TTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred ccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence 11233455688999999999999988 899999997643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=333.23 Aligned_cols=291 Identities=18% Similarity=0.306 Sum_probs=266.2
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
...+.+|.+.|++++|+|+|++|++++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCC-----CcEEEEcCCCCce-----------EEEEcCCCCcccCeEEEE
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPKSGEN-----------IHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~~~~~i~~~~ 243 (394)
+++.+..+. +...+.+++|+|++++|++++.+ +.|++||+..+.. ...+..+. ....+.+++
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 182 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE-GLDAATVAG 182 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT-TCCCEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc-CccceeEEE
Confidence 998888877 88899999999999999999999 9999999876532 12222211 122799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCE
Q 016187 244 ISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGV 322 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v 322 (394)
++|+++++++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.|+.|++||+..........+...+
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 999999999999999999999998 7888889999999999999999999999999999999999987777667788899
Q ss_pred EEEEEeCCCCEEEEEeCCC--------------eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 323 TCLMWLGTSKYVVTGCVDG--------------KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 323 ~~~~~~~~~~~l~sg~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 016187 389 EIAD 392 (394)
Q Consensus 389 ~~~~ 392 (394)
++..
T Consensus 343 ~~~~ 346 (369)
T 3zwl_B 343 HFEK 346 (369)
T ss_dssp EECH
T ss_pred ECcc
Confidence 9863
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=359.13 Aligned_cols=288 Identities=26% Similarity=0.463 Sum_probs=250.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-----eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-----~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
...+.+|++.|++|+|+|++..+|+||+.|++|++|++... .....+.+|...|.+++|+|+|++|++|+.|++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 45688999999999999988889999999999999998753 3456789999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee---ecccCcCeEEEEECCCC--CeE
Q 016187 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM---FSGHGSSVTCGDFTPDG--KTI 206 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~--~~l 206 (394)
+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||......... ..+|...|.+++|+|++ ..|
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 9999999999999999999999999999999999999999999999865433222 35788999999999986 589
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
++|+.|++|++||+++++....+.+ |...|++++++|+++++++|+.|++|++||+++++.+..+.. ...|.+++|
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~---h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 610 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCF 610 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEE
Confidence 9999999999999999888877765 567899999999999999999999999999999998877754 568999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcceec--------------------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTC--------------------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
+|++.++++++ ++.|++||+.+....... .+...+++++|+|++++|++|+.||.|++|
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence 99998887765 566999999765332211 011237889999999999999999999999
Q ss_pred ECC
Q 016187 347 DSL 349 (394)
Q Consensus 347 d~~ 349 (394)
++.
T Consensus 690 ~i~ 692 (694)
T 3dm0_A 690 GIG 692 (694)
T ss_dssp EC-
T ss_pred ecc
Confidence 975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=339.51 Aligned_cols=293 Identities=17% Similarity=0.248 Sum_probs=259.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe------eeEeecCcccCEEEEEEcCC----C---CEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMD----G---QLL 122 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~------~~~~~~~h~~~V~~v~~s~~----g---~~l 122 (394)
....+.+|.+.|++++|+| .+|++|+.|++|++|++.+++ ....+.+|..+|++++|+|+ | ++|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 3566789999999999998 589999999999999999887 78888999999999999999 9 999
Q ss_pred EEEeCCCcEEEEeCCCCce-----EEEEecC-----CCCEEEEEEc----CCCCE-EEEecCCCeEEEEeCCc------c
Q 016187 123 ASGGLDGLVQIWDPSSGNL-----KCTLEGP-----GGGVEWVSWH----PRGHI-VLAGSEDSTVWMWNADR------A 181 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~s~d~~i~iw~~~~------~ 181 (394)
++++.|+.|++|++.+++. ...+..+ ...|.+++|+ |++++ |++++.|+.|++|++.. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999998886 7788888 5899999999 99999 99999999999999988 6
Q ss_pred ceee-----eec-------ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc---ccCeEEEEEcC
Q 016187 182 AYLN-----MFS-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH---TEGLTCLTISA 246 (394)
Q Consensus 182 ~~~~-----~~~-------~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 246 (394)
+.+. .+. .|...+.+++|+|++ +|++++.||.|++||+++++.+..+.....| ...+.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 6665 663 488899999999999 9999999999999999999888887752224 67899999999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCcEEEEecc-------------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 247 DSTLALSGSKD---GSVHMVNITTGKVVSSLVS-------------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 247 ~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~-------------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
++.++++++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++.|+.|++||+...
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 9999999999999999988 9999999999999999999999999999999876
Q ss_pred Ccceec-------cC---------------CCCEEEEEEeCCC----------CEEEEEeCCCeEEEEECCCCe
Q 016187 311 LPRSTC-------DH---------------EDGVTCLMWLGTS----------KYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 311 ~~~~~~-------~~---------------~~~v~~~~~~~~~----------~~l~sg~~dg~i~iwd~~~~~ 352 (394)
...... .| ...|++++|+|++ ++|++|+.||.|++|++.+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 443332 45 8899999999998 799999999999999987764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=338.33 Aligned_cols=291 Identities=16% Similarity=0.208 Sum_probs=259.2
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCCCEEEEEEcCC----C---CEEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------LKCTLEGPGGGVEWVSWHPR----G---HIVLA 166 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l~~ 166 (394)
...+.+|.+.|++++|+| ++|++|+.|+.|++|++.+++ ....+.+|...|.+++|+|+ + .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 456889999999999999 799999999999999999888 67888899999999999999 9 99999
Q ss_pred ecCCCeEEEEeCCccce-----eeeeccc-----CcCeEEEEEC----CCCCe-EEEEeCCCcEEEEcCCC------Cce
Q 016187 167 GSEDSTVWMWNADRAAY-----LNMFSGH-----GSSVTCGDFT----PDGKT-ICTGSDDATLRVWNPKS------GEN 225 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~vwd~~~------~~~ 225 (394)
++.|+.|++|++.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999988776 7788888 5899999999 99999 99999999999999987 554
Q ss_pred EE-----EEcC----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---C---CCCEEEEEECCCC
Q 016187 226 IH-----VIRG----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---H---TDSIECIGFSRSS 290 (394)
Q Consensus 226 ~~-----~~~~----~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h---~~~i~~v~~~~~~ 290 (394)
+. .+.+ ...|...+.+++|+|++ ++++++.|+.|++||+++++.+..+.. | ...|.+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 44 4422 12356789999999999 999999999999999999999999988 9 9999999999999
Q ss_pred CeEEEEeCC---CcEEEEeCCCCCccee-cc-------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 291 PWAATGSMD---QKLIIWDLQHSLPRST-CD-------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 291 ~~l~s~s~d---g~i~iwd~~~~~~~~~-~~-------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
.+|++++.| +.|++||+........ .. |...|.+++|+|++++|++|+.||.|++||+.++++
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 999999999 9999999987654433 34 888999999999999999999999999999999999
Q ss_pred EEEee------cc---------------cCceeEEEEccCC----------CEEEEEeCCCcEEEEeccCC
Q 016187 354 VRTFS------GH---------------RDAIQAISVSAHQ----------DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 354 ~~~~~------~h---------------~~~v~~l~~~~~~----------~~l~s~s~dg~i~iw~~~~~ 393 (394)
+..+. +| ...|++++|+|++ ++|++++.||.|++|++++-
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999 88 9999999999998 79999999999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=347.96 Aligned_cols=317 Identities=12% Similarity=0.166 Sum_probs=264.6
Q ss_pred CCceeee-eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC---Ce---eeEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 54 DDSTHIF-SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GD---WASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 54 ~~~~~~~-~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~---~~---~~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
......+ .+|.+.|++++|+|.++.+||||+.|++|++|++.+ +. ....+ +|...|++++|+|++++|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 3456667 899999999999994467899999999999999866 43 22223 5999999999999999999999
Q ss_pred CCCcEEEEeCC---CCceEEEEec------------CCCCEEEEE--EcCCCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 127 LDGLVQIWDPS---SGNLKCTLEG------------PGGGVEWVS--WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 127 ~d~~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
.|++|++||+. +++....+.. +...+.++. +++++.++++++.|+.|++||+.+++.+..+.+
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 99999999984 5554433221 445666666 567899999999999999999999999888888
Q ss_pred --cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEc----CCCCEEEEEeCCCcEEEE
Q 016187 190 --HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS----ADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 190 --h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~g~~dg~i~i~ 263 (394)
|...|++++|+|++++|++|+.||+|++||+++++.+..+.. .+...|+++.++ |++.++++|+.|+.|++|
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 889999999999999999999999999999999888877652 144579999665 467899999999999999
Q ss_pred ECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 016187 264 NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKV 343 (394)
Q Consensus 264 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 343 (394)
|+++++.+..+..|...+..+.|+|++..+. +.. .....|...|++++|+ ++++|++|+.||.|
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~-----------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLE----ELN-----------FCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGG----GCC-----------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccc----cce-----------ecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 9999999999999999998888998876551 111 0012267789999999 77899999999999
Q ss_pred EEEECCCCeEEEEeec-------------------------------------ccCceeEEEEccC--CCEEEEEeCCCc
Q 016187 344 RVWDSLSGDCVRTFSG-------------------------------------HRDAIQAISVSAH--QDFLVSVSLDGT 384 (394)
Q Consensus 344 ~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~--~~~l~s~s~dg~ 384 (394)
++||+.+++++..+.+ |.+.|++++|+++ +.+|+||+.||.
T Consensus 353 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp EEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred EEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence 9999999888777765 8899999999998 789999999999
Q ss_pred EEEEe
Q 016187 385 ARVFE 389 (394)
Q Consensus 385 i~iw~ 389 (394)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=321.98 Aligned_cols=283 Identities=21% Similarity=0.354 Sum_probs=255.9
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eec--CcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~--~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
...+|.+.|++++|+|+ +.+|++++ |+.+++|++.+++... .+. +|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34589999999999995 66888888 9999999998765332 233 79999999999999999999999999999
Q ss_pred EeCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 134 WDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 134 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
||+.+++ ....+..+...+.+++|+|+++++++++.|+.|++|++.+++.+..+.+|...+.+++|+|++++|++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999887 55677888899999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
||.|++||+++++.+..+. +...+.+++++|++.++++++.++.|++||+.+++.. .+..|...|.+++|+|+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCC
Confidence 9999999999988777664 4567999999999999999999999999999988754 6778999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+|++++.||.|++||+..........|...+.+++|+|++++|++++.||.|++|++
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999988776666778899999999999999999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=332.76 Aligned_cols=293 Identities=14% Similarity=0.190 Sum_probs=249.4
Q ss_pred EEEcCCCeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEe--cCCCCEEEEEEcC-CCCEEEE
Q 016187 91 FWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHP-RGHIVLA 166 (394)
Q Consensus 91 ~w~~~~~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~ 166 (394)
+|++...+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++....+. +|...|.+++|+| ++++|++
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 34445666777889999999999999999 999999999999999999988877765 5889999999999 6789999
Q ss_pred ecCCCeEEEEeCCccceeeeecc---cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 167 GSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
++.|+.|++||+.+. .+..+.. |...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.. |...|.+++
T Consensus 137 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~---h~~~v~~~~ 211 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL---HKAKVTHAE 211 (383)
T ss_dssp EETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC---SSSCEEEEE
T ss_pred EeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc---CCCcEEEEE
Confidence 999999999999863 3444433 4578999999999999999999999999999 4666666665 567899999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEECCC----CcEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCcce-ec
Q 016187 244 ISADST-LALSGSKDGSVHMVNITT----GKVVSSLVSHTDSIECIGFSR-SSPWAATGSMDQKLIIWDLQHSLPRS-TC 316 (394)
Q Consensus 244 ~~~~~~-~l~~g~~dg~i~i~d~~~----~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~-~~ 316 (394)
|+|++. ++++|+.|+.|++||+++ +.++..+ .|...|.+++|+| ++.+|++++.|+.|++||++...... ..
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 999999 999999999999999987 6666666 6999999999999 99999999999999999997653321 11
Q ss_pred cC-------C----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec--ccCceeEEEEccCCCEEE
Q 016187 317 DH-------E----------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG--HRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 317 ~~-------~----------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~ 377 (394)
.| . ..+.+++|+|++++ +|+.||.|++||+.+++++..+.+ |...+..++|+|++++|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 368 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEE
Confidence 11 1 33455667777776 778999999999999999999987 567788889999999999
Q ss_pred EEeCCCcEEEEeccC
Q 016187 378 SVSLDGTARVFEIAD 392 (394)
Q Consensus 378 s~s~dg~i~iw~~~~ 392 (394)
+|+ ||.|++|++++
T Consensus 369 s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 369 SGM-GFNILIWNRED 382 (383)
T ss_dssp EEE-TTEEEEEECC-
T ss_pred Eec-CCcEEEEecCC
Confidence 998 99999999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=333.50 Aligned_cols=298 Identities=15% Similarity=0.248 Sum_probs=251.5
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecC---CCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCC---CCEEEE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD---GQLLAS 124 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~---d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~---g~~l~t 124 (394)
.|.....++.+|.+.|++++|+|++..++++|+. |+.+++|++.+++..... .+|..+|.+++|+|+ |++|++
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 3444567778999999999999987788888887 999999999988765443 479999999999999 699999
Q ss_pred EeCCCcEEEEeCCCCc-eEEEEecCCCCEEEEEE------cCCCCEEEEecCCCeEEEEeCCccc-eeeeecccCc----
Q 016187 125 GGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSW------HPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGS---- 192 (394)
Q Consensus 125 ~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~---- 192 (394)
|+.|+.|++||+.+++ ....+.+|...|.+++| +|++++|++++.|+.|++||+.++. .+..+..|..
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999999988 78889999999999955 6789999999999999999998876 5666665544
Q ss_pred CeEEEE----ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEEC
Q 016187 193 SVTCGD----FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA---DSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 193 ~v~~~~----~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~g~~dg~i~i~d~ 265 (394)
.+.+++ |+|++++|++++.||.|++||+++++...... +...+.++.|+| ++.++++++.||.|++||+
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 788888 78899999999999999999999887654432 467899999999 9999999999999999999
Q ss_pred CCCcEEEE-----eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCc--------------------ceeccCC
Q 016187 266 TTGKVVSS-----LVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQHSLP--------------------RSTCDHE 319 (394)
Q Consensus 266 ~~~~~~~~-----~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~~~--------------------~~~~~~~ 319 (394)
++++.+.. +..|...|.+++|+|+++ ++++++.||.|++||+..... .....|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 87654333 348999999999999998 899999999999999864321 2234688
Q ss_pred CCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeE
Q 016187 320 DGVTCLMWLGTSKYVV-TGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~ 353 (394)
..|++++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 8999999999999998 899999999999877654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=321.33 Aligned_cols=297 Identities=16% Similarity=0.247 Sum_probs=263.8
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|.+.|++++|+|+ +.+|++|+.|+.+++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 345668999999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccc-----------eeeeecccCc--CeEE
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAA-----------YLNMFSGHGS--SVTC 196 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~-----------~~~~~~~h~~--~v~~ 196 (394)
|+.+++.+..+. +...+.+++|+|+++++++++.+ +.+++|++.... ....+..|.. .+.+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999888877 77899999999999999999998 999999986543 2334455655 8999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
++|+|++++|++++.||.|++||+++ ++.+..+.. |...+.+++|+|++.++++++.|+.|++||+.+++.+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 99999999999999999999999998 566666654 56789999999999999999999999999999999888876
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCC--------------cEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQ--------------KLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg--------------~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
+...+.+++|+|++.++++++.++ .+++||+....... ...|...|++++|+|++++|++|+.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 788999999999999999999988 89999998765443 35688999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEe
Q 016187 341 GKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~ 357 (394)
|.|++|++.++.....+
T Consensus 337 g~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp SEEEEEEECHHHHTCCC
T ss_pred CeEEEEECccccchhHH
Confidence 99999998776544333
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=345.95 Aligned_cols=305 Identities=15% Similarity=0.163 Sum_probs=244.1
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--eEeecCcccCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~~~~~~h~~~V~~v~~s~-~g~~l~t~s~d~~i~v 133 (394)
.....+|...|++|+|||.++.+||+|+.||+|+|||+.+++. ...+.+|.+.|++|+|+| ++++|+||+.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3445689999999999998888999999999999999987654 345678999999999998 6899999999999999
Q ss_pred EeCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-eEEEEe
Q 016187 134 WDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGS 210 (394)
Q Consensus 134 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 210 (394)
||+.++........ +...+.+++|+|++.+|++|+.|+.|++||++. +.+..+.+|...|.+++|+|+++ +|++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec
Confidence 99987654433332 234578899999999999999999999999865 45677889999999999999876 688999
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCC------EEEE
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS------IECI 284 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~------i~~v 284 (394)
.|++|++||+++.+....+.....|...|++++|+|++.+|++++.|++|++||+.++.....+..|... +...
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 9999999999887654444333457788999999999999999999999999999998877777665432 1223
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEee-cccC
Q 016187 285 GFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFS-GHRD 362 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~-~h~~ 362 (394)
.|+|++.+++++ +++++..++.+ ..++.|++||..+++++..+. +|..
T Consensus 351 ~~~~~~~~~~~~------------------------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~ 400 (435)
T 4e54_B 351 AWHPRYNLIVVG------------------------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400 (435)
T ss_dssp EECSSSSCEEEE------------------------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred EEcCCCCEEEEE------------------------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 444444444333 33444443333 345679999999999988864 7888
Q ss_pred ceeEE-EEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 363 AIQAI-SVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 363 ~v~~l-~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.|.++ +|+|++++|++|+ |++|+||++++-
T Consensus 401 ~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 401 GISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred cEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 89887 6999999999887 789999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=328.65 Aligned_cols=292 Identities=16% Similarity=0.279 Sum_probs=249.6
Q ss_pred EeecCcccCEEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCC---CCEEEEecCCCe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLL-ASGGL---DGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPR---GHIVLAGSEDST 172 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l-~t~s~---d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~s~d~~ 172 (394)
..+.+|.+.|++++|+|++..+ ++|+. |+.|++||+.+++..... .+|...|.+++|+|+ +.+|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 3457899999999999999655 56665 999999999988765443 367889999999998 699999999999
Q ss_pred EEEEeCCccc-eeeeecccCcCeEEEE------ECCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCc-ccCeEEEE
Q 016187 173 VWMWNADRAA-YLNMFSGHGSSVTCGD------FTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYH-TEGLTCLT 243 (394)
Q Consensus 173 i~iw~~~~~~-~~~~~~~h~~~v~~~~------~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~-~~~i~~~~ 243 (394)
|++|++.+++ .+..+.+|...|.+++ |+|++++|++++.||.|++||+.+++ .+..+..+..+ ...+.++.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999887 7888899999999995 57899999999999999999999886 56666554332 34688888
Q ss_pred ----EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC---CCCeEEEEeCCCcEEEEeCCCCCccee-
Q 016187 244 ----ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR---SSPWAATGSMDQKLIIWDLQHSLPRST- 315 (394)
Q Consensus 244 ----~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~- 315 (394)
++|++.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.++++++.||.|++||++.......
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 788999999999999999999999887544 56889999999999 899999999999999999876433222
Q ss_pred -----ccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-------------------eEEEEeecccCceeEEEEc
Q 016187 316 -----CDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSG-------------------DCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 316 -----~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~~ 370 (394)
..|...|++++|+|+++ +|++|+.||.|++||+.++ +++..+.+|..+|++++|+
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 26889999999999998 8999999999999998754 4677889999999999999
Q ss_pred cCCCEEE-EEeCCCcEEEEeccCC
Q 016187 371 AHQDFLV-SVSLDGTARVFEIADF 393 (394)
Q Consensus 371 ~~~~~l~-s~s~dg~i~iw~~~~~ 393 (394)
|++++|+ +++.||.|++|++..+
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCeEEEEecCCCcEEEEECCCc
Confidence 9999998 8999999999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=328.96 Aligned_cols=289 Identities=18% Similarity=0.233 Sum_probs=253.0
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
.+..|.++|++++|+|+ +.+||+|+.|+.+++|++.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 45679999999999995 6789999999999999999987 78889999999999999999999999999999999999
Q ss_pred CCCceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCCCeEEEEe
Q 016187 137 SSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 137 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
.+++....+ ..+...|.+++|+|++++|++++.|+.+++|++.... ......+|...|.+++|+|++++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 888755443 5688899999999999999999999999999998765 2333467899999999999999999999
Q ss_pred CCCcEEEEcCC------------------CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 016187 211 DDATLRVWNPK------------------SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 211 ~dg~i~vwd~~------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 272 (394)
.||.|++||++ .++.+..+.. |...+.+++|+|++.++++++.|+.|++||+++++.+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 99999999954 4566655543 56789999999999999999999999999999999999
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC--CC---------------------------------------
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH--SL--------------------------------------- 311 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~--~~--------------------------------------- 311 (394)
.+..|..+|.+++|+|++.+++++ .|+.|++|++.. ..
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 999999999999999999988888 899999999876 21
Q ss_pred -cceeccCCCCEEEEEEe-CCC---CEEEEEeCCCeEEEEECCCCe
Q 016187 312 -PRSTCDHEDGVTCLMWL-GTS---KYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 312 -~~~~~~~~~~v~~~~~~-~~~---~~l~sg~~dg~i~iwd~~~~~ 352 (394)
.....+|...|++++|+ +++ .+|++|+.||.|++|++.+++
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 11123788999999976 666 899999999999999986654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=327.34 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=242.9
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec--CcccCEEEEEEcC-CCCEEEEEeCCCcE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSM-DGQLLASGGLDGLV 131 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~--~h~~~V~~v~~s~-~g~~l~t~s~d~~i 131 (394)
.....+.+|.+.|++++|+|++..+||+|+.|+.|++|++.+++....+. +|...|.+++|+| ++++|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 34667789999999999999765899999999999999999887776665 7999999999999 78999999999999
Q ss_pred EEEeCCCCceEEEEecC---CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-eEE
Q 016187 132 QIWDPSSGNLKCTLEGP---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TIC 207 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 207 (394)
++||+.+ +....+..+ ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|+
T Consensus 144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 9999986 444455443 378999999999999999999999999999 4667788889999999999999999 899
Q ss_pred EEeCCCcEEEEcCCC----CceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCC----
Q 016187 208 TGSDDATLRVWNPKS----GENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT---- 278 (394)
Q Consensus 208 s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---- 278 (394)
+++.|+.|++||+++ +..+..+. |...+++++|+| ++.++++++.|+.|++||+++++.+..+..|.
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 999999999999987 55555542 567899999999 99999999999999999999887655555432
Q ss_pred -------------CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-c--CCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 279 -------------DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-D--HEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 279 -------------~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
..+..++|+|++.+ +++.|+.|++||+.+....... . |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 33445677777776 7789999999999876554433 2 456788889999999999997 999
Q ss_pred EEEEECCC
Q 016187 343 VRVWDSLS 350 (394)
Q Consensus 343 i~iwd~~~ 350 (394)
|++||+.+
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=330.28 Aligned_cols=300 Identities=18% Similarity=0.268 Sum_probs=254.5
Q ss_pred EEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCc------eEEEEec----------C
Q 016187 90 FFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDP----SSGN------LKCTLEG----------P 148 (394)
Q Consensus 90 ~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~----~~~~------~~~~~~~----------~ 148 (394)
.+|+.+..........|.++|++++|+|+|+ +||+|+.|+.|++|++ .+++ ....+.. |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107 (425)
T ss_dssp ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence 3677655444444455779999999999999 9999999999999999 8887 4555544 5
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
.+.|.+++|+|++++|++++.|+.|++|+ .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 66999999999999999999999999999 56677788889999999999999999999999999999999999988777
Q ss_pred EcCCCCcc------------cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 229 IRGHPYHT------------EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 229 ~~~~~~~~------------~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
+..+.... ..+.++.++|++ .+++++.++.|++||+.+++.+..+..|...|.+++|+|++.+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 66432110 017788888875 57889999999999999999888899999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 297 SMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
+.|+.|++||+....... ...|...+.+++|+|++ ++++++.||.|++||+.+++++..+..|...|.+++|+|++++
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK 344 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence 999999999998765444 34588899999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeccC
Q 016187 376 LVSVSLDGTARVFEIAD 392 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~~ 392 (394)
|++++.||.|++|++..
T Consensus 345 l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEEETTSCEEEEECHH
T ss_pred EEEEECCCeEEEEECCC
Confidence 99999999999999863
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=337.77 Aligned_cols=323 Identities=11% Similarity=0.118 Sum_probs=238.1
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC--eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~--~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..+..|.++|++++|+|+ +.+||+|+.|+.+++|++.++ +....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 5 ~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eeEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 445667889999999995 678999999999999999988 77788999999999999999999999999999999999
Q ss_pred CCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---eeeeecc-cCcCeEEEEECCCCCeEEE
Q 016187 136 PSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSG-HGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 136 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~l~s 208 (394)
+.+++ ....+..|...|.+++|+|++++|++++.|+.|++|++..++ ....+.+ |...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 566777899999999999999999999999999999998876 3666777 9999999999999999999
Q ss_pred EeCCCcEEEEcCCCCc---------------eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---
Q 016187 209 GSDDATLRVWNPKSGE---------------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV--- 270 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--- 270 (394)
++.|++|++||+.... .-..+... .|...+++++|+|+++++++++.|++|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999985321 11112222 4677899999999999999999999999999999876
Q ss_pred -EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--cceeccCC----------------CCEEEEEEeCCC
Q 016187 271 -VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--PRSTCDHE----------------DGVTCLMWLGTS 331 (394)
Q Consensus 271 -~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~----------------~~v~~~~~~~~~ 331 (394)
+..+..|..+|.+++|+|++.+|++++.++.+ +|+..... ........ ....++.|++..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALR 321 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999866665 66654221 01111100 112223232222
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCC-C---EEEEEeCCCcEEEEec
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-D---FLVSVSLDGTARVFEI 390 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~---~l~s~s~dg~i~iw~~ 390 (394)
..+......|... ........|.+.|+++++.+.. . .|+|||.||.|++|++
T Consensus 322 ~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 322 STFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccchhhccccc-------cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 2221111111111 1112235799999999976543 3 6999999999999986
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=327.99 Aligned_cols=291 Identities=21% Similarity=0.358 Sum_probs=249.2
Q ss_pred eeeeccCCcEEEEEEcCC---CCcEEEEecCCCeEEEEEcCCCeeeEeecC-----cccCEEEEEEcCC----CCEEEEE
Q 016187 58 HIFSGHSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMD----GQLLASG 125 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~---~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-----h~~~V~~v~~s~~----g~~l~t~ 125 (394)
....+|.++|++++|+|. +..++++++.++.+++|++.+++.+..+.. |...|++++|+|+ |++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345589999999999984 334444555667999999998877766654 5578999999999 6799999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTP 201 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~ 201 (394)
+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 8999999999999999999998888777 78999999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcC-------------------------CCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRG-------------------------HPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
++++|++++.||.|++||+++++....+.. ...|...|.++.++ +.++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 999999999999999999987653322110 11266789999998 779999999
Q ss_pred CCcEEEEECCCCc--------------EEEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCcc-----ee
Q 016187 257 DGSVHMVNITTGK--------------VVSSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSLPR-----ST 315 (394)
Q Consensus 257 dg~i~i~d~~~~~--------------~~~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~-----~~ 315 (394)
|+.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||+...... ..
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence 9999999998764 37788889999999999999 999999999999999999876432 23
Q ss_pred ccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 316 CDH--EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 316 ~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
..| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 345 68899999999999999999999999999753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=311.21 Aligned_cols=283 Identities=20% Similarity=0.291 Sum_probs=253.2
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
.+....+.+|.+.|++++| |++++|++|+.|+.|++||+.+++....+..|...|.+++|+|+++++++++.|+.+++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4677889999999999999 999999999999999999999999888889999999999999999999999999999999
Q ss_pred eCCcc---ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEE
Q 016187 177 NADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLAL 252 (394)
Q Consensus 177 ~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 252 (394)
++... +.+..+.+|...|.+++| ++++|++++.||.|++|| .++....+.. |...+.++.+.| ++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA---HNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC---CSSCEEEEEEEETTTTEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc---CCCceeEEEEccCCCCEEE
Confidence 98653 556778899999999999 678999999999999999 5555666554 567899999888 899999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGT 330 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~ 330 (394)
+++.|+.|++|| ..+.+..+.. |...+.+++|+|++. +++++.|+.|++||++...... ...|...|++++|+|+
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 999999999999 5566677776 899999999999998 9999999999999998765544 3468899999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+ +|++|+.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++..
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 9 689999999999999999999999999999999999999998 56799999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=329.55 Aligned_cols=288 Identities=16% Similarity=0.255 Sum_probs=249.6
Q ss_pred eecCcccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCceEEEEec-----CCCCEEEEEEcCC----CCEEEEec
Q 016187 102 EIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPR----GHIVLAGS 168 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~----g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~s 168 (394)
...+|..+|++++|+|+ ...+++++.++.|++||+.+++.+..+.. +...|.+++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44689999999999984 45666677777999999998877665543 5578999999999 66999999
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.|+.|++|++.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+.....|...+.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999999999999999999999999999 9999999999999999999999888887544457788999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEe----------------------------ccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 248 STLALSGSKDGSVHMVNITTGKVVSSL----------------------------VSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~~~~----------------------------~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.++++++.||.|++||+++++.+..+ ..|...|.+++|+ +.++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 999999999999999999887544333 3399999999999 6799999999
Q ss_pred CcEEEEeCCCCCc---------------ceeccCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCe----EEEEee
Q 016187 300 QKLIIWDLQHSLP---------------RSTCDHEDGVTCLMWLGT--SKYVVTGCVDGKVRVWDSLSGD----CVRTFS 358 (394)
Q Consensus 300 g~i~iwd~~~~~~---------------~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~----~~~~~~ 358 (394)
+.|++||+..... .....|...|++++|+|+ +++|++|+.||.|++||+.+++ ....+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 9999999875432 123357778999999999 9999999999999999999876 444788
Q ss_pred cc--cCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 359 GH--RDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 359 ~h--~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+| ...|++++|+|++++|++++.||.|++|++.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 87 7999999999999999999999999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=325.46 Aligned_cols=287 Identities=17% Similarity=0.244 Sum_probs=250.0
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~ 180 (394)
+..|.++|++++|+|+|++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++|++.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45599999999999999999999999999999999887 7788889999999999999999999999999999999987
Q ss_pred cceee--eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE---EEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 181 AAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---HVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 181 ~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
++... .+..|...|.+++|+|++++|++++.|+.|++||+..++.. ..+. ..|...+++++|+|++.++++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee--cccCCCeeEEEEcCCCCEEEEEc
Confidence 75433 34678999999999999999999999999999999887642 2222 23567899999999999999999
Q ss_pred CCCcEEEEEC------------------CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eec
Q 016187 256 KDGSVHMVNI------------------TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STC 316 (394)
Q Consensus 256 ~dg~i~i~d~------------------~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 316 (394)
.|+.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.|+.|++||++..... ...
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 9999999995 467888899999999999999999999999999999999999766443 334
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeE--------------------------------E------EE
Q 016187 317 DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS--GDC--------------------------------V------RT 356 (394)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~--~~~--------------------------------~------~~ 356 (394)
.|...+.+++|+|++.+|++| .|+.|++|++.+ ++. . ..
T Consensus 242 ~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 242 SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 677899999999999988888 899999999877 421 0 22
Q ss_pred e-ecccCceeEEEEc-cCC---CEEEEEeCCCcEEEEeccC
Q 016187 357 F-SGHRDAIQAISVS-AHQ---DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 357 ~-~~h~~~v~~l~~~-~~~---~~l~s~s~dg~i~iw~~~~ 392 (394)
+ .+|..+|++++|. +++ ++|+||+.||.|++|++.+
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 3 4899999999866 666 9999999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=323.82 Aligned_cols=336 Identities=14% Similarity=0.231 Sum_probs=246.3
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-------------cCcccCEEEEEEcC-CCC
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-------------QGHKDSVSSLAFSM-DGQ 120 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-------------~~h~~~V~~v~~s~-~g~ 120 (394)
.....+.+|.+.|++++|+|.++.+||+|+.|+.+++|++.+++....+ .+|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 4567788999999999999955678999999999999999887655444 36999999999999 778
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC---CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
+|++++.|+.|++||+.+++....+. +...+..+.|+|.+ .++++++.++.|++|++.+++.+..+.+|...|.++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999999998877766 66789999999854 499999999999999999998889999999999999
Q ss_pred EECCCCC-eEEEEeCCCcEEEEcCCCCc-eEEEEcCC------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 198 DFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGH------------PYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 198 ~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
+|+|+++ +|++++.||.|++||++++. .+..+..+ ..|...+++++|+|++.++++++.|+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 48999999999999998765 33333211 2466789999999999999999999999999
Q ss_pred ECCCCcEEEEeccC-----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEE
Q 016187 264 NITTGKVVSSLVSH-----TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 264 d~~~~~~~~~~~~h-----~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg 337 (394)
|+.+++....+..+ ...+...........++.++.++.|++||+.+...... ..|...|++++|+|++++|++|
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99988765443322 12222223334455677778899999999987655443 4688999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEEeccCCC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
+.||.|++|++.+++.+.....+... ..+.+ ....+.+.+.|+.+++|+...|+
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 407 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQFE 407 (408)
T ss_dssp ETTSCEEEEEECC---------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcccC
Confidence 99999999999999887765543322 22333 34456678889999999988774
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=333.83 Aligned_cols=286 Identities=16% Similarity=0.320 Sum_probs=252.2
Q ss_pred ccCEEEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 107 KDSVSSLAFSMDGQ-LLASG----------GLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 107 ~~~V~~v~~s~~g~-~l~t~----------s~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
...|.+++|+|+|+ +|++| +.|+.|++||+.+++ .... ..+...|.+++|+|++.+|++++.|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCe
Confidence 34688999999997 99999 899999999998875 2323 347789999999999999999999999
Q ss_pred EEEEeCCc----cceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCc------eEEEEcCCCCcccCeEE
Q 016187 173 VWMWNADR----AAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGE------NIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 173 i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~i~~ 241 (394)
|++|++.. .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+++ ....+.....|...+.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4577888899999999999998 8999999999999999998876 33333223346778999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccC------CCCEEEEEECCCC-CeEEEEeCCC---cEEEEeCCCC
Q 016187 242 LTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSH------TDSIECIGFSRSS-PWAATGSMDQ---KLIIWDLQHS 310 (394)
Q Consensus 242 ~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~v~~~~~~-~~l~s~s~dg---~i~iwd~~~~ 310 (394)
++|+|+ +.++++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .++++++.|+ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999999 789999999999999999999999888776 7899999999997 6899999999 9999999874
Q ss_pred -Ccce-ec-cCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCC-CEEEEEeCCCcE
Q 016187 311 -LPRS-TC-DHEDGVTCLMWLG-TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTA 385 (394)
Q Consensus 311 -~~~~-~~-~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i 385 (394)
.+.. .. .|...|.+++|+| ++++|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3333 33 6889999999999 89999999999999999999999999999999999999999998 899999999999
Q ss_pred EEEeccCC
Q 016187 386 RVFEIADF 393 (394)
Q Consensus 386 ~iw~~~~~ 393 (394)
++|++...
T Consensus 331 ~iw~~~~~ 338 (416)
T 2pm9_A 331 EVQTLQNL 338 (416)
T ss_dssp EEEESCCC
T ss_pred EEEEccCC
Confidence 99998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=309.41 Aligned_cols=291 Identities=20% Similarity=0.312 Sum_probs=254.9
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
......+.+|.+.|++++| |+ +.+|++|+.|+.+++|++.+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 3557788999999999999 74 567899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEE
Q 016187 134 WDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209 (394)
Q Consensus 134 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 209 (394)
|++... +....+..|...|.+++| ++.++++++.|+.+++|+ ..+....+..|...+.++.|.| ++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 998654 456678889999999999 577999999999999999 5566777888999999999988 89999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
+.||.|++||. ++....+.. .+...+.+++++|++. +++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus 162 ~~d~~i~i~d~--~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 162 SADKTIKLWQN--DKVIKTFSG--IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp ETTSCEEEEET--TEEEEEECS--SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred ECCCCEEEEec--CceEEEEec--cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 99999999993 445555543 2567899999999998 899999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 290 SPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 290 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
+ .+++++.||.|++||+.+..... ...|...|.+++|+|+++ +++++.||.|++|++.+++.+...
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9 68999999999999998765443 346777899999999998 567999999999999888766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=345.89 Aligned_cols=325 Identities=18% Similarity=0.255 Sum_probs=278.4
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|.+.|.+++|+|+ +.+||+|+.|+.+++|++.+++.+..+.+|.+.|++++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 356678899999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECC--CCCeEEEE
Q 016187 135 DPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTP--DGKTICTG 209 (394)
Q Consensus 135 d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~ 209 (394)
|+.++ .....+.+|...|.+++|+| ++..+++++.|+.|++|++.++.....+..+. ..+.+++|+| ++++|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred ECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 99887 66677888999999999999 78899999999999999998877666665554 8899999999 99999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
+.||.|++||+.+++.+..+.+ |...+++++|+|++.++++++.||.|++||+.+++.+..+..|...+.+++|+|+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred eCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 9999999999999988877765 4668999999999999999999999999999999999999999999999999999
Q ss_pred CCe-EEEEeCCCcEEEEeCCCCCcce--------------------------------------------eccCCCCEEE
Q 016187 290 SPW-AATGSMDQKLIIWDLQHSLPRS--------------------------------------------TCDHEDGVTC 324 (394)
Q Consensus 290 ~~~-l~s~s~dg~i~iwd~~~~~~~~--------------------------------------------~~~~~~~v~~ 324 (394)
+.. +++++.++.+.+|++....... ...+...+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (814)
T 3mkq_A 282 GRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQS 361 (814)
T ss_dssp CGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSE
T ss_pred CCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCce
Confidence 873 2444456778888865321100 0113345789
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++|+|++++|++++ +|.+.+|++...... +.+.|.+++|+|+++++++++.+|.|++|+
T Consensus 362 ~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 362 LAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred eEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 99999999999998 999999997655432 245677888888888888888888888885
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=324.29 Aligned_cols=305 Identities=17% Similarity=0.286 Sum_probs=257.2
Q ss_pred CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-------------cCCC
Q 016187 85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLE-------------GPGG 150 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-------------~~~~ 150 (394)
.+..+++|++...+....+.+|.+.|++++|+| ++++|++|+.|+.|++||+.+++....+. +|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 345677888888888888999999999999999 99999999999999999999876543332 4888
Q ss_pred CEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC---CCeEEEEeCCCcEEEEcCCCCceE
Q 016187 151 GVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
.|.+++|+| ++.++++++.|+.|++|++.+++....+. +...+.++.|+|. +.++++++.|+.|++||+++++.+
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 999999999 77799999999999999999988777665 7778899999984 459999999999999999998888
Q ss_pred EEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-EEEEe---------------ccCCCCEEEEEECCC
Q 016187 227 HVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGK-VVSSL---------------VSHTDSIECIGFSRS 289 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~---------------~~h~~~i~~v~~~~~ 289 (394)
..+.. |...+++++++|++. ++++|+.||.|++||++++. .+..+ ..|...|.+++|+|+
T Consensus 180 ~~~~~---~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 180 HILQG---HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp EEECC---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeecC---CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 77765 567899999999998 58899999999999998765 33333 468899999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcceec------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 290 SPWAATGSMDQKLIIWDLQHSLPRSTC------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 290 ~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+.+|++++.|+.|++||+......... .....+...........+++++.++.|++||+.+++++..+.+|.+.
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 999999999999999999765432211 11112222233344567778888999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|++++|+|++++|++++.||.|++|++...
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 999999999999999999999999998765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=318.01 Aligned_cols=286 Identities=19% Similarity=0.349 Sum_probs=250.2
Q ss_pred EeecCcccCE--EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 101 SEIQGHKDSV--SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 101 ~~~~~h~~~V--~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
....+|.+.+ .+++|++ ..+++++.|+.|++||+.+++....+.. +...|.+++|+|++++|++|+.|+.|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp EECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 3445776654 4456654 5688899999999999999998877765 678999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||++. +..+..+.. |...+.++.|+|++.++++|+.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEET
T ss_pred CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999 567999999999999999984 445555554 5678999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC-eEEEEe--CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP-WAATGS--MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 333 (394)
|+.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++||+.+........+...+.+++|+|++++
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE 317 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSE
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCe
Confidence 99999999999999999999999999999999765 566655 799999999998877777778889999999999999
Q ss_pred EEEE--eCCCeEEEEECCCCeEEE--EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 334 VVTG--CVDGKVRVWDSLSGDCVR--TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 334 l~sg--~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
++++ +.||.|++|++.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+.
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9994 489999999999876654 46799999999999999999999999999999998753
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=320.90 Aligned_cols=278 Identities=15% Similarity=0.178 Sum_probs=223.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCce----------EEEEecCCCCEEEEEEcCCCCEEEEe--
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDG-------LVQIWDPSSGNL----------KCTLEGPGGGVEWVSWHPRGHIVLAG-- 167 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~-------~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~-- 167 (394)
.-||++++|+|||++|++|+.+. .|++|++..+.. ...+..+...+.++++. +..+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999998654 599999875532 12345677777777654 4555554
Q ss_pred ---------cCCCeEEEEeCCccce----eee-----ecccCcCeEEEEECCCCCeEEE--EeCCCcEEEEcCCCCceEE
Q 016187 168 ---------SEDSTVWMWNADRAAY----LNM-----FSGHGSSVTCGDFTPDGKTICT--GSDDATLRVWNPKSGENIH 227 (394)
Q Consensus 168 ---------s~d~~i~iw~~~~~~~----~~~-----~~~h~~~v~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~~ 227 (394)
+.|+.+++|++..... ... ...+...+.+++|+|||+++++ ++.|++|+|||+.+++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 4578899998754321 111 1234456889999999999764 4578999999999999887
Q ss_pred EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eccCCCCEEEEEECCCCCeEEEEeCCC----c
Q 016187 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS--LVSHTDSIECIGFSRSSPWAATGSMDQ----K 301 (394)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~h~~~i~~v~~~~~~~~l~s~s~dg----~ 301 (394)
.+. |...|.+++|+|+++++++++.+ .+.+|+..+++.+.. ...|...|.+++|+|++.++++++.|+ .
T Consensus 172 ~~~----~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 172 EIE----TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEE----CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EeC----CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 775 45579999999999999998854 566777777765543 456888999999999999999999887 6
Q ss_pred EEEEeCCCCCc-----ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCE
Q 016187 302 LIIWDLQHSLP-----RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 302 i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~ 375 (394)
+++|++..... .....|...|++++|+|++++||+|+.|++|+|||+.++++++.+ .+|..+|++|+|+||+++
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 88898765432 234568889999999999999999999999999999999999885 799999999999999999
Q ss_pred EEEEeCCCcEEEEecc
Q 016187 376 LVSVSLDGTARVFEIA 391 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~ 391 (394)
|||||.|++||||+++
T Consensus 327 laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 327 VASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSEEEEEECC
T ss_pred EEEEeCCCeEEEEEcC
Confidence 9999999999999986
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=316.31 Aligned_cols=277 Identities=20% Similarity=0.399 Sum_probs=242.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 186 (394)
.++.|+||++ ++||+|. |++|+|||..+|+....+. +|...|++++|+|++++|++|+.|+.|++|++.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3678999985 5777765 9999999999999876654 5677899999999999999999999999999999999999
Q ss_pred ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+.+|...+.++++ ++..|++|+.|+.+++||...... +..+.+ |...+..+.++|++.++++++.|+.+++|+.
T Consensus 185 ~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~---h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 185 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc---cccceeeeeecCCCCeeeeeeccccceEEee
Confidence 9999999988776 467999999999999999886543 344444 5678999999999999999999999999999
Q ss_pred CCCc----EEEEeccCCCCEEEEEECCCCC-eEEE--EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe
Q 016187 266 TTGK----VVSSLVSHTDSIECIGFSRSSP-WAAT--GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 266 ~~~~----~~~~~~~h~~~i~~v~~~~~~~-~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
.+++ .+.....|...|.+++|+|.+. ++++ |+.|++|++||+.+........+...+.++.|+++++.+++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence 8764 3456778999999999999765 4444 4579999999999887776667778899999999999988765
Q ss_pred --CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 339 --VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 339 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.||.|+|||+.+++++.++.+|.+.|++|+|+|++++|+|||.|++|++|++.+
T Consensus 340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 799999999999999999999999999999999999999999999999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=301.60 Aligned_cols=277 Identities=19% Similarity=0.398 Sum_probs=241.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+++|+||+++ +||+| .|++|+|||+.+++.+..+. +|...|.+++|+|++++|++|+.|++|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999986 77765 59999999999999887665 56778999999999999999999999999999999999999
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
.+|...+.++. +++..+++++.++.+++|+...... +..+.+ |...+.++.+.+++.++++++.|++|++||++
T Consensus 106 ~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 106 TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred cCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcC---ccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 99999887655 4567999999999999999877644 334443 56779999999999999999999999999998
Q ss_pred CCc----EEEEeccCCCCEEEEEECCCCCe---EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe-
Q 016187 267 TGK----VVSSLVSHTDSIECIGFSRSSPW---AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC- 338 (394)
Q Consensus 267 ~~~----~~~~~~~h~~~i~~v~~~~~~~~---l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~- 338 (394)
+++ .......|...|.++.++|.+.. +++++.+++|++||...........+...+..+.|++.++.+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEE
Confidence 765 23455668889999999998764 3467789999999998887777777888899999999999888765
Q ss_pred -CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 339 -VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 339 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.|+.|++||+.+++++.++.+|.+.|++|+|+|++++|+|||.||+|+||++.+.
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7999999999999999999999999999999999999999999999999999765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=302.94 Aligned_cols=247 Identities=20% Similarity=0.302 Sum_probs=213.9
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--CeeeEeecCcccCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQI 133 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--~~~~~~~~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~v 133 (394)
.++.+|.+.|++++|+|+ +.+||||+.|++|++|++.. .+.+.++.+|.++|++++|+|+ |++|++|+.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 467899999999999995 67899999999999999974 4677899999999999999874 899999999999999
Q ss_pred EeCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCC-----
Q 016187 134 WDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPD----- 202 (394)
Q Consensus 134 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~----- 202 (394)
||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++|++.... ....+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998874 45677889999999999997 7899999999999999997653 23567789999999999997
Q ss_pred --------CCeEEEEeCCCcEEEEcCCCCc----eEEEEcCCCCcccCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 016187 203 --------GKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADS---TLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 203 --------~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~g~~dg~i~i~d~~~ 267 (394)
+++|++|+.|++|++||+++++ ....+.+ |...|.+++|+|++ .++++++.|++|++||+.+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 3344444 67789999999984 8999999999999999976
Q ss_pred Cc---EEEEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 268 GK---VVSSL--VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 268 ~~---~~~~~--~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
.. ....+ ..|...|.+++|+|++++||+++.|++|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 43 22233 4678899999999999999999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=316.11 Aligned_cols=298 Identities=20% Similarity=0.333 Sum_probs=250.3
Q ss_pred CCCCceeeee--ccCCcE--EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCCCEEEEEe
Q 016187 52 QPDDSTHIFS--GHSDEV--YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 52 ~~~~~~~~~~--~h~~~v--~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s 126 (394)
.|..+..++. +|.+.+ .+++|++ .. +++++.|+.|++|++.+++....+.. |...|++++|+|+|++|++|+
T Consensus 77 ~~~~p~~~~~~~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 77 FNTTPERVLDAPGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp CCCSCSEEEECTTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeeCCCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence 3444555554 777765 4456654 33 55678999999999999988877765 899999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC-ccceeeeecccCcCeEEEEECCCCCe
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.|+.|++||+. .......+.+|...|.+++|+|++++
T Consensus 154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231 (401)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE
Confidence 99999999999999999999999999999994 5799999999999999998 45667788899999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEeccCCCCEE
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS--KDGSVHMVNITTGKVVSSLVSHTDSIE 282 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~~i~ 282 (394)
|++|+.|+.|++||+++++.+..+.. |...+.+++|+|++. ++++|+ .|+.|++||+.+++.+..+. +...|.
T Consensus 232 l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~ 307 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVT 307 (401)
T ss_dssp EEEEETTSCEEEEETTCSSEEEEECC---CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred EEEEeCCCeEEEccCCCCCccEEecC---CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEE
Confidence 99999999999999999888777764 567899999999764 555654 79999999999999888875 668899
Q ss_pred EEEECCCCCeEEEE--eCCCcEEEEeCCCCCcce---eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 283 CIGFSRSSPWAATG--SMDQKLIIWDLQHSLPRS---TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 283 ~v~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
+++|+|++.+++++ +.||.|++|++....... ...|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999999995 489999999997643322 3468889999999999999999999999999999999887654
Q ss_pred e
Q 016187 358 S 358 (394)
Q Consensus 358 ~ 358 (394)
.
T Consensus 388 ~ 388 (401)
T 4aez_A 388 I 388 (401)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=303.35 Aligned_cols=247 Identities=21% Similarity=0.331 Sum_probs=214.0
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWM 175 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~i 175 (394)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. ++.+.++.+|.++|.+++|+|. +++|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999874 3667889999999999999864 789999999999999
Q ss_pred EeCCccc--eeeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCC--
Q 016187 176 WNADRAA--YLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISAD-- 247 (394)
Q Consensus 176 w~~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~-- 247 (394)
||+.+++ .+..+.+|...|.+++|+|+ +++|++++.|++|++||++++.. ...+.+ |...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATI 158 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC---CSSCEEEEEECCCC-
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec---ccCccceEeecCCcc
Confidence 9998763 45667789999999999997 89999999999999999987632 233333 5678999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCC---CeEEEEeCCCcEEEEeCCC
Q 016187 248 -----------STLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSS---PWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 248 -----------~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~---~~l~s~s~dg~i~iwd~~~ 309 (394)
++++++|+.|++|++||+++++ ....+.+|...|.+++|+|++ .+||+++.|++|+|||+..
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 667888999999999999984 7999999999999999875
Q ss_pred CCc---c-ee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 310 SLP---R-ST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 310 ~~~---~-~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
... . .. ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 321 1 11 3567889999999999999999999999999865
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=318.29 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=242.1
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.+....|+| ++.+||+|+.|+.+++|++.+++....+.+|...|++++|+|++++|++|+.|++|++||+.+++....+
T Consensus 99 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 99 YTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred ceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 344446777 5678999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc---CcC---------------------eEEEEECC
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH---GSS---------------------VTCGDFTP 201 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h---~~~---------------------v~~~~~~~ 201 (394)
.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..| ... +.+++|+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 999999999999999999999999999999999988887777643 333 44455688
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-EEEEecc-CC
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGK-VVSSLVS-HT 278 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~~~-h~ 278 (394)
++++|++|+.||.|++||+++++.+..+.. .|...+++++|+|++. ++++|+.||.|++||+++++ ++..+.. |.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEccc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence 999999999999999999999887766643 3567899999999998 99999999999999999875 3566665 67
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----------CcceeccCCCCEEEEEEeCCCC---EEEEEeCCCeEEE
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS----------LPRSTCDHEDGVTCLMWLGTSK---YVVTGCVDGKVRV 345 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~---~l~sg~~dg~i~i 345 (394)
..|.++.+. ++.+|++++.|++|++|++... .......|...|.+++|+|++. .+++.+.+|.+.+
T Consensus 336 ~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 336 TPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp SCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CCceEEEeC-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 788888655 6789999999999999998652 2223456788899999999999 7888888999999
Q ss_pred EECCC
Q 016187 346 WDSLS 350 (394)
Q Consensus 346 wd~~~ 350 (394)
|++..
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=302.93 Aligned_cols=247 Identities=19% Similarity=0.348 Sum_probs=223.2
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
+...+.+|...|++++|+|+ +.+|+||+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 57 ~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 46678999999999999995 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCC------CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRG------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
+. ++.+..+.+|...|..++|+|.. ..+++++.|+.|++||+.+.+....+.+|...|.+++|+|++++|++|
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 86 56677888999999999999854 489999999999999999988888899999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--------CCCCE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--------HTDSI 281 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--------h~~~i 281 (394)
+.||+|++||+.+++.+..+.. ...+.+++|+|++.++++++.+ .+++|++..+..+..+.. |...+
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v 289 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC----CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCE
T ss_pred eCCCeEEEEECCCCcEEEEecC----CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcce
Confidence 9999999999999988877764 3579999999999999888755 599999988877766542 45679
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.+++|+|++++|++|+.|++|++||+.+
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEee
Confidence 9999999999999999999999999754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=310.79 Aligned_cols=248 Identities=24% Similarity=0.341 Sum_probs=209.5
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEe
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~ 177 (394)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|.+++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467899999999999999999999999999999998775 4567889999999999986 478999999999999999
Q ss_pred CCccc--eeeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC------
Q 016187 178 ADRAA--YLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD------ 247 (394)
Q Consensus 178 ~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~------ 247 (394)
++++. ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+...........|...+.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98763 45667899999999999997 789999999999999999876443323333446778899999997
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCC---cEEEEeccCCCCEEEEEECCCC----CeEEEEeCCCcEEEEeCCC
Q 016187 248 -----------STLALSGSKDGSVHMVNITTG---KVVSSLVSHTDSIECIGFSRSS----PWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 248 -----------~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~~v~~~~~~----~~l~s~s~dg~i~iwd~~~ 309 (394)
+.++++|+.|++|++||++.+ +.+..+.+|...|.+++|+|++ .+|++++.|++|++|++..
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 468999999999999999755 4677888999999999999986 7899999999999999875
Q ss_pred C-----CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 310 S-----LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 310 ~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
. .......|...|.+++|+|++++|++|+.||.|++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 2 122334678899999999999999999999999999965
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=315.07 Aligned_cols=286 Identities=26% Similarity=0.425 Sum_probs=248.9
Q ss_pred eeEeecCcccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 99 WASEIQGHKDSV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 99 ~~~~~~~h~~~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
....+.+|...| .++.| ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++ ++++|+.|++|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 445788999885 66665 56799999999999999999999999999999999999999988 899999999999999
Q ss_pred CCccceeeeecccCcCeEEEEEC--CCCCeEEEEeCCCcEEEEcCCCCceEEE--------------------EcCCCCc
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVWNPKSGENIHV--------------------IRGHPYH 235 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~ 235 (394)
+.+++.+..+.+|...|.+++|+ +++++|++|+.||+|++||+.+++.... +.....|
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 5789999999999999999987653221 1111224
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-
Q 016187 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS- 314 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~- 314 (394)
...+.++ ++++.++++|+.|+.|++||+.+++.+..+..|...|.+++|+|++.++++++.|++|++||+.+.....
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 5556665 6789999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
...|...|.++.|+ +.+|++|+.||.|++||+.+++....+. |...+..++|++++++|++++ ||.|++|++.+.
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 44688999999997 5899999999999999999988766554 667788899999999999999 899999998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=307.08 Aligned_cols=272 Identities=19% Similarity=0.295 Sum_probs=212.1
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~ 132 (394)
..++.+|.+.|++++|+|+ +.+||||+.|++|++||+.+++ .+..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp --------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eeecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 3456799999999999995 6789999999999999998764 4678999999999999986 489999999999999
Q ss_pred EEeCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEEECCC---
Q 016187 133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPD--- 202 (394)
Q Consensus 133 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~--- 202 (394)
+||+.+++ ....+.+|...|.+++|+|+ +.+|++|+.|+.|++|++.... ....+.+|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99998874 45677889999999999998 7899999999999999997653 24566789999999999997
Q ss_pred --------------CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC----CEEEEEeCCCcEEEEE
Q 016187 203 --------------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVN 264 (394)
Q Consensus 203 --------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~g~~dg~i~i~d 264 (394)
+++|++|+.|++|++||++.+.....+.....|...|.+++|+|++ .+|++|+.|++|++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 4789999999999999997653222222233467889999999986 8899999999999999
Q ss_pred CCCC---c-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe
Q 016187 265 ITTG---K-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 265 ~~~~---~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
+.+. + ....+..|...|.+++|+|++.+||+++.|++|++|+.... ....++.-..+++..++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~---------g~~~~~~~~~~~~~~~~~~ 313 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD---------GQWVCISDVNKGQGSVSAS 313 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT---------SCEEEEEECC---------
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC---------CcEEEeeeccCCCCceeee
Confidence 8762 1 12234568899999999999999999999999999996422 1234444445555555543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=307.86 Aligned_cols=309 Identities=20% Similarity=0.353 Sum_probs=247.1
Q ss_pred CCCCceeeeeccC----CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee--cCcccCEEEEEEcCCCCEEEEE
Q 016187 52 QPDDSTHIFSGHS----DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASG 125 (394)
Q Consensus 52 ~~~~~~~~~~~h~----~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~--~~h~~~V~~v~~s~~g~~l~t~ 125 (394)
.|..+..++.+-. =..+.|+|+++ ++||.| .|++|+|||..+++....+ .+|.+.|++|+|+|+|++||+|
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~--n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCceEEECCCCcccccceeEEECCC--CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence 4455556665421 13577999974 478876 4999999999999887755 4688899999999999999999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
+.|++|+|||+.+++.+..+.+|...+.+++|+ +.++++|+.|+.+++|+.... ..+..+.+|...+..+.++|+++
T Consensus 166 s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC
Confidence 999999999999999999999999999888775 579999999999999998764 45677889999999999999999
Q ss_pred eEEEEeCCCcEEEEcCCCCce----EEEEcCCCCcccCeEEEEEcCCCC-EEEE--EeCCCcEEEEECCCCcEEEEeccC
Q 016187 205 TICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADST-LALS--GSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
++++++.|+.+++|+..+++. +.... .+...|.+++++|.+. ++++ |+.|++|++||+.+++++..+..|
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~---~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEEC---CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred eeeeeeccccceEEeeccccccceeeeeec---ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence 999999999999999987653 22222 3567899999999765 4444 457999999999999998888754
Q ss_pred CCCEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 278 TDSIECIGFSRSSPWAATGS--MDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
..+.++.|+|++..+++++ .|++|+|||+.+..... ..+|...|++++|+|++++|+||+.||+|++||+......
T Consensus 321 -~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 321 -SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp -SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred -cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 5788899999999888765 79999999998765443 4579999999999999999999999999999999887777
Q ss_pred EEeecccCceeEEEE
Q 016187 355 RTFSGHRDAIQAISV 369 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~ 369 (394)
+..+.+...+....|
T Consensus 400 ~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 400 RRREREKASAAKSSL 414 (420)
T ss_dssp ---------------
T ss_pred chhhhccCCcccccc
Confidence 766666655544444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=304.05 Aligned_cols=275 Identities=12% Similarity=0.141 Sum_probs=239.7
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWM 175 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~i 175 (394)
.....+|.+.|++++|+|++++|++++.|+.|++|++.+++ ....+..|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 2344567889999999999999 9999999999999
Q ss_pred EeC-Cccceeeeecc--cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---------CceEEEEcCCCCcccCeEEEE
Q 016187 176 WNA-DRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 176 w~~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~i~~~~ 243 (394)
|++ .+++. ..+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++.+..+. +...+.+++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~ 157 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----VKNKIFTMD 157 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----SCCCEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----eCCceEEEE
Confidence 999 77654 66778 999999999999 99999999999999999876 44333222 567899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC-Cc--EEEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCC------Ccc
Q 016187 244 ISADSTLALSGSKDGSVHMVNITT-GK--VVSSLVSHTDSIECIGFSR-SSPWAATGSMDQKLIIWDLQHS------LPR 313 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~-~~--~~~~~~~h~~~i~~v~~~~-~~~~l~s~s~dg~i~iwd~~~~------~~~ 313 (394)
++|++ +++++.|+.|++||+++ +. .......|...+.+++|+| ++.++++++.||.+++|++... ...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99987 89999999999999988 54 3344556888999999999 9999999999999999998754 222
Q ss_pred -eeccCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc-cCceeEEEEccCCCEEEEEeCC
Q 016187 314 -STCDHE---------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH-RDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 314 -~~~~~~---------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~d 382 (394)
....|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+.+| ..+|++++ |++++|++++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 223443 38999999999999999999999999999999999999998 99999999 999999999999
Q ss_pred Cc
Q 016187 383 GT 384 (394)
Q Consensus 383 g~ 384 (394)
|+
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 99
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=315.53 Aligned_cols=282 Identities=19% Similarity=0.332 Sum_probs=232.1
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEEecCC------------CCEEEEEEcCCC
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----------LKCTLEGPG------------GGVEWVSWHPRG 161 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 161 (394)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++ ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 378999999999999999999999999999998876 467788888 889999999998
Q ss_pred --CEEEEecCCCeEEEEeCCcccee----------------------------------------eeecccCcCeEEEEE
Q 016187 162 --HIVLAGSEDSTVWMWNADRAAYL----------------------------------------NMFSGHGSSVTCGDF 199 (394)
Q Consensus 162 --~~l~~~s~d~~i~iw~~~~~~~~----------------------------------------~~~~~h~~~v~~~~~ 199 (394)
.+|++++.|+.|++|++..+... ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764331 113679999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCC-CceEEEEc----CCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE---
Q 016187 200 TPDGKTICTGSDDATLRVWNPKS-GENIHVIR----GHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKV--- 270 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~--- 270 (394)
+|++++|++| .|+.|++||+.+ ++.+..+. ....|...|++++|+|++ .++++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999999 799999999984 33333321 122467789999999998 9999999999999999999886
Q ss_pred -EEEeccCCC------------CEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcce-eccCCCC--------------
Q 016187 271 -VSSLVSHTD------------SIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRS-TCDHEDG-------------- 321 (394)
Q Consensus 271 -~~~~~~h~~------------~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~-~~~~~~~-------------- 321 (394)
+..+..|.. .|.+++|+|++.+|++++. +.|++||++. ..+.. ...|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 677888876 8999999999999999999 9999999975 43332 2233321
Q ss_pred -EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc---------------------------------cCceeEE
Q 016187 322 -VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH---------------------------------RDAIQAI 367 (394)
Q Consensus 322 -v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h---------------------------------~~~v~~l 367 (394)
+..++|+|++++|++|+.||.|++||+.+++.+ .+.+| ...|..+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 234899999999999999999999999998876 33333 3568899
Q ss_pred EEccCCCEEEEEeCCCcEEEEec
Q 016187 368 SVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 368 ~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+|+|++++||+++.++ +.+|.-
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEEC
T ss_pred EECCCCCEEEEEecce-eeeecc
Confidence 9999999999998887 777763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=316.91 Aligned_cols=283 Identities=13% Similarity=0.210 Sum_probs=234.7
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-----------eeEeecCcc------------cCEEEEEEcCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------WASEIQGHK------------DSVSSLAFSMD 118 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-----------~~~~~~~h~------------~~V~~v~~s~~ 118 (394)
.|.+.|++++|+|+ +.+||+|+.|+.|++|++.+++ ....+.+|. +.|++++|+|+
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 36789999999994 6789999999999999998776 577899998 88999999999
Q ss_pred C--CEEEEEeCCCcEEEEeCCCCceE---------------------------------------EE-EecCCCCEEEEE
Q 016187 119 G--QLLASGGLDGLVQIWDPSSGNLK---------------------------------------CT-LEGPGGGVEWVS 156 (394)
Q Consensus 119 g--~~l~t~s~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 156 (394)
+ .+|++++.|++|++||+.+++.. .. ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 89999999999999998764331 12 357889999999
Q ss_pred EcCCCCEEEEecCCCeEEEEeCCc-cceee-------eecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCce--
Q 016187 157 WHPRGHIVLAGSEDSTVWMWNADR-AAYLN-------MFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGEN-- 225 (394)
Q Consensus 157 ~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~-- 225 (394)
|+|++++|++| .|+.|++||+.. .+.+. .+.+|...|.+++|+|++ ++|++|+.||+|++||+++++.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 799999999984 44443 367899999999999998 9999999999999999998876
Q ss_pred --EEEEcCCCC---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCC-------------
Q 016187 226 --IHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS------------- 280 (394)
Q Consensus 226 --~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~------------- 280 (394)
+..+..+.. |...+.+++|+|+++++++++. +.|++||+++ ++++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 566665321 1137999999999999999999 9999999997 8888888777532
Q ss_pred --EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee---------------------------------ccCCCCEEEE
Q 016187 281 --IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST---------------------------------CDHEDGVTCL 325 (394)
Q Consensus 281 --i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------------------~~~~~~v~~~ 325 (394)
+..++|+|++++|++++.||.|++||+.+...... ..+...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 23489999999999999999999999976543221 1334568899
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEC
Q 016187 326 MWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 326 ~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+|+|++++|++++.++ +++|..
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEEC
T ss_pred EECCCCCEEEEEecce-eeeecc
Confidence 9999999999998776 778864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=293.17 Aligned_cols=253 Identities=24% Similarity=0.416 Sum_probs=228.2
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.....+.+|...|.+++|+|+ +.+|++|+.|+.+++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 56 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 345678899999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee-cccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+.+++....+..|..+|.+++|+|+++++++++.|+.|++||+.+++.+..+ ..+...+.+++|+|++++|++++.|+
T Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999988776655 35667899999999999999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
.|++||+++++.+..+.++......+......+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 294 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEE
T ss_pred eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCce
Confidence 99999999999888887654333334344445788999999999999999999999999999999999999999999999
Q ss_pred EEEe--CCCcEEEEeCC
Q 016187 294 ATGS--MDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s--~dg~i~iwd~~ 308 (394)
++++ .|++|++|+..
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 9987 69999999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=308.73 Aligned_cols=280 Identities=15% Similarity=0.152 Sum_probs=222.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCC-------eEEEEEcCCCee----------eEeecCcccCEEEEEEcCCCCEEEEE--
Q 016187 65 DEVYSVACSPTDATLVATGGGDD-------KGFFWRINQGDW----------ASEIQGHKDSVSSLAFSMDGQLLASG-- 125 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~-------~v~~w~~~~~~~----------~~~~~~h~~~V~~v~~s~~g~~l~t~-- 125 (394)
-+|++++|+|+ +++||+||+|. .|++|++..... ...|.+|.+.|.+++++ +..+++|
T Consensus 15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 48999999994 67899987654 599999865431 12467899999888765 4566665
Q ss_pred ---------eCCCcEEEEeCCCCceEEE----E-----ecCCCCEEEEEEcCCCCEEEE--ecCCCeEEEEeCCccceee
Q 016187 126 ---------GLDGLVQIWDPSSGNLKCT----L-----EGPGGGVEWVSWHPRGHIVLA--GSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 126 ---------s~d~~i~vwd~~~~~~~~~----~-----~~~~~~v~~~~~~~~~~~l~~--~s~d~~i~iw~~~~~~~~~ 185 (394)
+.|+.+++|++.+...... . ..+...+..++|+|+|+++++ ++.|++|++||+.+++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 3577899998766543211 1 123456889999999998754 5578999999999998887
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC----cEE
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG----SVH 261 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg----~i~ 261 (394)
.+. |...|.+++|+|+|++|++++.++ +++|+..+++.+.... ...|...+.+++|+|+++++++++.|+ .++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKT-DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEEC-CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeee-cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 774 778899999999999999998655 5666666666554332 123566799999999999999999887 688
Q ss_pred EEECCCCcE----EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEE
Q 016187 262 MVNITTGKV----VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 262 i~d~~~~~~----~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~ 335 (394)
+|++..... ...+..|..+|++++|+|++++||+|+.|++|+|||+.+..+... .+|...|++++|+|++++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 899877643 345778999999999999999999999999999999988765443 47999999999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 016187 336 TGCVDGKVRVWDSLS 350 (394)
Q Consensus 336 sg~~dg~i~iwd~~~ 350 (394)
+||.|++|+||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 999999999999853
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=301.61 Aligned_cols=298 Identities=18% Similarity=0.267 Sum_probs=227.1
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCc
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGL 130 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~ 130 (394)
..++.+|.+.|++++|+|+ +.+||+|+.|+.|++|++.++ +....+.+|...|++++|+| ++++|++|+.|+.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4567899999999999995 678999999999999999876 46677899999999999999 6999999999999
Q ss_pred EEEEeCCCC---------ceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccceeeeec-----------
Q 016187 131 VQIWDPSSG---------NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFS----------- 188 (394)
Q Consensus 131 i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~~~~~~~----------- 188 (394)
|++||+.++ +....+..|...|.+++|+|+ +.++++++.|+.|++||+.+++.+..+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999887 456778889999999999999 9999999999999999998766544332
Q ss_pred --ccCcCeEEEEECCC---CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC----CEEEEEeCCCc
Q 016187 189 --GHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGS 259 (394)
Q Consensus 189 --~h~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~g~~dg~ 259 (394)
+|...+.+++|+|+ +.+|++++.++.+.+|+...++.. .+.....|...|++++|+|++ .++++|+.||.
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 67889999999997 899999999999988887776542 222223467789999999998 89999999999
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
|++||++.+........+...+.....++....+ ......+..
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~ 284 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMD-------------------------------------AQGRSDSNT 284 (351)
T ss_dssp EEEEEEEECC----------------------------------------------------------------------
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccc-------------------------------------ccccccccc
Confidence 9999998765433222111111111111111000 011122334
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
...+.+|+....+++..+.+|...|++++|+|++++|++++.||.|++|++...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 556777877778889999999999999999999999999999999999998753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=303.59 Aligned_cols=293 Identities=19% Similarity=0.265 Sum_probs=246.1
Q ss_pred EEcCCCeeeEeecCcccCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CceE-EEEecCCCCEEEEEEcCCCCEEEE
Q 016187 92 WRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWDPSS-GNLK-CTLEGPGGGVEWVSWHPRGHIVLA 166 (394)
Q Consensus 92 w~~~~~~~~~~~~~h~~~V~~v~~s~~---g~~l~t~s~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 166 (394)
|+....+.+..+.+|.+.|++++|+|+ |++|++|+.|+.|++||+.+ +... ..+.+|.+.|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 344556677789999999999999999 69999999999999999987 5444 678889999999999999999999
Q ss_pred ecCCCeEEEEeCCccceeeeecccCcCeEEEEE--CCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEE
Q 016187 167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (394)
++.|+.|++|++.+++.+. +.+|...|.+++| +|++++|++++.||.|++||+++++.+..+..+ ..+.++.+
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~ 178 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----ERCYCADV 178 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS----SCEEEEEE
T ss_pred EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC----CCceEEEe
Confidence 9999999999999887665 5679999999999 899999999999999999999999888777643 24555555
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEEECCCCCe----EEEEeCCCcEEEEeCCCCCc----ce
Q 016187 245 SADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIGFSRSSPW----AATGSMDQKLIIWDLQHSLP----RS 314 (394)
Q Consensus 245 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~~~~~~~~----l~s~s~dg~i~iwd~~~~~~----~~ 314 (394)
. ...+++++.++.+++|++......... ..+...+.++.+.++... +++++.|+.|++|++..... ..
T Consensus 179 ~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 179 I--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp E--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred c--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 5 458889999999999999876543332 224455667776665554 99999999999999976532 12
Q ss_pred eccCCC------------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 315 TCDHED------------GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 315 ~~~~~~------------~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
...|.. .|++++|+|++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|++++|++++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 223333 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecc
Q 016187 383 GTARVFEIA 391 (394)
Q Consensus 383 g~i~iw~~~ 391 (394)
+..+.|++-
T Consensus 337 ~~~~~~~~~ 345 (368)
T 3mmy_A 337 DWSKGHEFY 345 (368)
T ss_dssp CSTTCGGGC
T ss_pred ccccccccc
Confidence 876666543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=309.91 Aligned_cols=291 Identities=26% Similarity=0.500 Sum_probs=242.2
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
..+|...|+++++ ++.+|++|+.|++|++||+.+++....+.+|...|.+++| ++++|++|+.||+|++||+.++
T Consensus 129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 3467788999887 3568999999999999999999999999999999999998 7889999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee---eeecccCcCeEEEEECCCCCeEEEEeCCCcEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 216 (394)
+....+.+|...|.+++|++ ..+++|+.|+.|++||+.++... ..+.+|...|.+++| ++++|++|+.||.|+
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99999999999999999974 58999999999999999877654 667899999999999 788999999999999
Q ss_pred EEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
+||+++++.+..+.+ |...+.++.+ ++.++++|+.||.|++||+++++++..+..|...|.+++| ++.+|++|
T Consensus 280 vwd~~~~~~~~~~~~---~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 280 VWNTSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEETTTCCEEEEEEC---CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EEECCcCcEEEEEcC---CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999998888775 4567888888 4689999999999999999999999999999999999999 67899999
Q ss_pred eCCCcEEEEeCCCCC----------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 297 SMDQKLIIWDLQHSL----------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 297 s~dg~i~iwd~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
+.||.|++||+.... ......|...|.+++| ++.+|++|+.||.|++||+.+......... ..+...
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~ 429 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRT 429 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccc
Confidence 999999999985432 2334578889999999 788999999999999999987765543332 223444
Q ss_pred EEE
Q 016187 367 ISV 369 (394)
Q Consensus 367 l~~ 369 (394)
+.|
T Consensus 430 ~~~ 432 (435)
T 1p22_A 430 YTY 432 (435)
T ss_dssp ---
T ss_pred eee
Confidence 444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=311.11 Aligned_cols=276 Identities=27% Similarity=0.473 Sum_probs=243.7
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
..+|...|.+++| ++++|++|+.|+.|++||+.+++....+.+|.+.|.+++| +++++++|+.||.|++||+.+++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3457788998876 7899999999999999999999999999999999999998 78899999999999999999999
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
.+..+.+|...|.+++|++ .++++|+.||.|++||+.+++..........|...+.++.+ ++.++++|+.||.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 9999999999999999974 59999999999999999988765322222336678999888 7889999999999999
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
||+++++.+..+..|...|.++.++ +.++++|+.||.|++||+++..... ...|...|.++.| ++.+|++|+.||
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg 356 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 356 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCC
Confidence 9999999999999999999999994 6799999999999999998765443 4468889999988 788999999999
Q ss_pred eEEEEECCCCe---------EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 342 KVRVWDSLSGD---------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 342 ~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|++||+.+++ ++..+.+|.+.|++++| ++++|++|+.||+|++|++.+
T Consensus 357 ~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 357 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 99999987666 88899999999999999 788999999999999999865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=306.01 Aligned_cols=282 Identities=28% Similarity=0.549 Sum_probs=250.6
Q ss_pred CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 96 QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 96 ~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
..+....+.+|.+.|.. +++++|++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+ +.++++|+.|+.|++
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 33445678999987533 355578999999999999999999999999999999999999998 569999999999999
Q ss_pred EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
|++.+++.+..+.+|...|.+++|+ ++.+++|+.||+|++||+.+++.+..+.+ |...+.++.+ ++.++++|+
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC---CSSCEEEEEE--CSSCEEEEE
T ss_pred EECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC---CcccEEEEEE--CCCEEEEEc
Confidence 9999999999999999999999995 57899999999999999999998888765 4667999988 788999999
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 334 (394)
.||.|++||+++++.+..+..|...|.++.| ++.++++++.|+.|++||+.+..... ...|...+.++.+. ++++
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE
T ss_pred CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999999 78899999999999999998765443 34677788888774 5799
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeec---ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFSG---HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
++|+.||.|++||+.+++++..+.+ |...|.+++|+ +++|++|+.||.|++|++.+.
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999999999986 88999999995 589999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=321.35 Aligned_cols=286 Identities=12% Similarity=0.093 Sum_probs=225.5
Q ss_pred eeeeccCCcEEEEEEcCC-----CCcEEEEecCCCeEEEEEcCCCee-----------eEeecCcccCEEEEEEcCCCCE
Q 016187 58 HIFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDW-----------ASEIQGHKDSVSSLAFSMDGQL 121 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~-----~~~~lasg~~d~~v~~w~~~~~~~-----------~~~~~~h~~~V~~v~~s~~g~~ 121 (394)
..+.+|.+.|++|+|+|. ++.+||||+.|++|++|++..++. ...+.+|...|++++|+|++ +
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 346788999999999995 246999999999999999976532 23678999999999999864 8
Q ss_pred EEEEeCCCcEEEEeCCCCc-eEEEEecCCCCEEEE--EEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCc--CeE
Q 016187 122 LASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWV--SWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVT 195 (394)
Q Consensus 122 l~t~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~--~v~ 195 (394)
|++|+.||+|++||+.++. ....+.+|...|.++ +|+|++ ++|++|+.|++|++||+++++....+.+|.. .|.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 9999999999999998774 445688999999999 567887 8999999999999999998887777777753 578
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
+++|+|+++.+++++.|++|++||++++.++..+.+ |...|++++|+|+++++++|+.|++|++||+..+ .+..+.
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~ 435 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIK 435 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccc
Confidence 999999999999999999999999999888777765 5678999999999999999999999999998653 221111
Q ss_pred c-----CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC---EEEEEeCCCeEEEEE
Q 016187 276 S-----HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK---YVVTGCVDGKVRVWD 347 (394)
Q Consensus 276 ~-----h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~sg~~dg~i~iwd 347 (394)
. +...+.+++|+|++..+. ...+-.+..|+..........+|...|.+++|+|+++ .|++|+.+|.|+||+
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 1 122477899999998542 2222222223322334445567899999999999964 999999999999999
Q ss_pred CC
Q 016187 348 SL 349 (394)
Q Consensus 348 ~~ 349 (394)
+.
T Consensus 515 l~ 516 (524)
T 2j04_B 515 LS 516 (524)
T ss_dssp CS
T ss_pred cc
Confidence 75
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=286.18 Aligned_cols=295 Identities=20% Similarity=0.322 Sum_probs=242.2
Q ss_pred CCCCCceeeeec--cCC--cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee--cCcccCEEEEEEcCCCCEEEE
Q 016187 51 EQPDDSTHIFSG--HSD--EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLAS 124 (394)
Q Consensus 51 ~~~~~~~~~~~~--h~~--~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~--~~h~~~V~~v~~s~~g~~l~t 124 (394)
..|..+.+++.+ ..+ ..++|+|+|+ .+||+| .|++|+|||+.+++.+..+ .+|...|++++|+|+|++|++
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCC--CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 345556666653 222 2467999985 377775 5999999999999988766 468889999999999999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCC
Q 016187 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 125 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~ 203 (394)
|+.|++|++|++.+++.+..+.+|...+.++. +++..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999998887655 45679999999999999998765 4556788999999999999999
Q ss_pred CeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCCCCEE---EEEeCCCcEEEEECCCCcEEEEeccCCC
Q 016187 204 KTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLA---LSGSKDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l---~~g~~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
++|++++.|++|++||+++++.... ......+...+.++.++|.+..+ ++++.+++|++||.......... .+..
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~ 241 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHS 241 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSS
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-ccee
Confidence 9999999999999999987653211 11112355678999999976533 45678899999999988776554 4677
Q ss_pred CEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 280 SIECIGFSRSSPWAATGS--MDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
.+..+.|+|.+..+++++ .|++|++||+.+..... ..+|...|++++|+|++++|++|+.||+|+|||+...
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 899999999999887654 79999999998765543 4579999999999999999999999999999998654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=296.13 Aligned_cols=294 Identities=17% Similarity=0.230 Sum_probs=245.4
Q ss_pred CCCCCceeeeeccCCcEEEEEEcCCC--CcEEEEecCCCeEEEEEcCC-Ceee-EeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 51 EQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~lasg~~d~~v~~w~~~~-~~~~-~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
..|......+.+|.+.|++++|+|++ +.+|++|+.|+.+++|++.+ +..+ ..+.+|...|++++|+|++++|++++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 35666788899999999999999975 68999999999999999986 4444 78899999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEE--cCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
.|+.|++||+.+++... +..|...|.+++| +|++++|++++.|+.|++||+.+++.+..+..+. .+.++.+. ..
T Consensus 106 ~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~ 181 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YP 181 (368)
T ss_dssp TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TT
T ss_pred CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CC
Confidence 99999999999988765 5668899999999 8899999999999999999999988888887665 55566665 45
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---cEEEEeccC
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL----ALSGSKDGSVHMVNITTG---KVVSSLVSH 277 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~g~~dg~i~i~d~~~~---~~~~~~~~h 277 (394)
.+++++.++.+++|++........... ........++.+.++... +++++.|+.|++|++... +.+..+..|
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred eeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 888999999999999987654433322 123345666666665544 999999999999999887 556667777
Q ss_pred CC------------CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 278 TD------------SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 278 ~~------------~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
.. +|.+++|+|++.+|++++.||.|++||+.+.... ....|...|.+++|+|++++|++|+.|+..+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 65 7999999999999999999999999999876443 3346788999999999999999999998666
Q ss_pred EEECC
Q 016187 345 VWDSL 349 (394)
Q Consensus 345 iwd~~ 349 (394)
.|+..
T Consensus 341 ~~~~~ 345 (368)
T 3mmy_A 341 GHEFY 345 (368)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 55543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=294.72 Aligned_cols=280 Identities=13% Similarity=0.096 Sum_probs=240.7
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---eeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~v 133 (394)
.+..+|.+.|++++|+|+ +.+|++|+.|+.+++|++.+++ ....+.+|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 345689999999999995 5688999999999999998876 3445668999999999999999 9999999999999
Q ss_pred EeC-CCCceEEEEec--CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---------cceeeeecccCcCeEEEEECC
Q 016187 134 WDP-SSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---------AAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 134 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---------~~~~~~~~~h~~~v~~~~~~~ 201 (394)
||+ .+++. ..+.. |...|.+++|+| +.++++++.|+.|++|++.+ .+.+..+. |...+.+++|+|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 77755 66777 999999999999 99999999999999999987 77666666 889999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCC-CceE-EEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC------cEEE
Q 016187 202 DGKTICTGSDDATLRVWNPKS-GENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG------KVVS 272 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~------~~~~ 272 (394)
++ +++++.|+.|++||+++ +... .... ..+...+.+++++| ++.++++++.||.|++|++... +...
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEE--SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEE--CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeee--cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 87 99999999999999988 5432 2121 12456799999999 9999999999999999999876 6777
Q ss_pred EeccCCC---------CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccC-CCCEEEEEEeCCCCEEEEEeCCC
Q 016187 273 SLVSHTD---------SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDH-EDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 273 ~~~~h~~---------~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.+..|.. .|.+++|+|++.+|++++.||.|++||+.+..... ...| ...|.+++ |++++|++|+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 7777765 99999999999999999999999999998765443 3456 88899998 9999999999999
Q ss_pred e-EEEEE
Q 016187 342 K-VRVWD 347 (394)
Q Consensus 342 ~-i~iwd 347 (394)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 55444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=311.09 Aligned_cols=293 Identities=12% Similarity=0.040 Sum_probs=236.1
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
...|.+|+|+| +++++||++.|++|+ +...+ ..+.+|...|++++|+|+| .++.+.+|+.... ...
T Consensus 15 ~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~ 80 (588)
T 2j04_A 15 EDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLL 80 (588)
T ss_dssp SSSSCCEEECT-TSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSS
T ss_pred hccEEEEEECC-CCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEe
Confidence 46889999999 578999999999999 64444 4568999999999999999 4666666654322 222
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCc-----CeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-----SVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
++ .+.+.|.+++|+|+|..|++++.||.+++|+.+. ++..+. |.. .+.+++|+|+|++||+|+.||+|++|
T Consensus 81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 22 3478899999999999999999999999999655 556666 665 49999999999999999999999999
Q ss_pred cCCCCce-------EEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEe-ccCCCCEEEEEE
Q 016187 219 NPKSGEN-------IHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV---VSSL-VSHTDSIECIGF 286 (394)
Q Consensus 219 d~~~~~~-------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~-~~h~~~i~~v~~ 286 (394)
|+.++.. +..++.+ ..|...|.+++|+|++ +++++.|+++++|++..++. ..++ ..|...|.+++|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 9998752 4555322 2366789999999999 78899999999999988773 3556 478899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCC-------------
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLS------------- 350 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~sg~~dg~i~iwd~~~------------- 350 (394)
+ +.++|+++ +++|++||+..... ....+|...+..++| +|++..|++++.+|+ ++|....
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 9 58999987 69999999987766 444489999999999 999999999999999 9997531
Q ss_pred ----------CeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 351 ----------GDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 351 ----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
+..+..+.+ ...|.+++|+|||+.+|+++.
T Consensus 311 d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 EKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 111222222 445899999999999998874
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=296.03 Aligned_cols=250 Identities=21% Similarity=0.338 Sum_probs=218.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeE
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTV 173 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i 173 (394)
+++..+.+|.+.|++++|+|++++|++|+.|+.|++|++. +++....+.+|.+.|.+++|+|+ +.+|++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4567789999999999999999999999999999999997 55667788899999999999987 8999999999999
Q ss_pred EEEeCCccc--eeeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCceE--EEEcCCCCcccCeEEEEEcC-
Q 016187 174 WMWNADRAA--YLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENI--HVIRGHPYHTEGLTCLTISA- 246 (394)
Q Consensus 174 ~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~i~~~~~~~- 246 (394)
++|++.+++ .+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.++... ..+.. |...+.++.|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCC
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC---CCCceEEEEEcCc
Confidence 999998876 67778889999999999999 999999999999999999887432 23332 567899999999
Q ss_pred ------------CCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCC---CCeEEEEeCCCcEEEEeC
Q 016187 247 ------------DSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRS---SPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 247 ------------~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~---~~~l~s~s~dg~i~iwd~ 307 (394)
++.++++++.|+.|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 69999999999999999998764 55678889999999999999 899999999999999999
Q ss_pred CCCCc---c---eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 308 QHSLP---R---STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 308 ~~~~~---~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
..... . ....|...|.+++|+|++++|++++.||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 76521 1 1223778899999999999999999999999999763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=301.10 Aligned_cols=284 Identities=18% Similarity=0.307 Sum_probs=241.0
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe----eeEeecCcccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC--
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSG-- 139 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~----~~~~~~~h~~~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~~-- 139 (394)
...++++|....++++|+.|+.|+||++.... ....+.+|.+.|++++|+| ++++|++|+.|++|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578898766677788999999999986542 3456789999999999999 9999999999999999999987
Q ss_pred -----ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee--cccCcCeEEEEECCCCCeEEEEeC
Q 016187 140 -----NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 140 -----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
+....+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 5677889999999999999998 69999999999999999999888888 889999999999999999999999
Q ss_pred CCcEEEEcCCCCceEEEE-cCCCCcccCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCcE-EEE-eccCCCCEEEEE
Q 016187 212 DATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSG---SKDGSVHMVNITTGKV-VSS-LVSHTDSIECIG 285 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~g---~~dg~i~i~d~~~~~~-~~~-~~~h~~~i~~v~ 285 (394)
||.|++||+++++.+..+ ..+. ...+.++.|+|++.++++| +.|+.|++||+++++. +.. ...|...+.+++
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 999999999999888777 4432 2237889999999999999 7999999999988653 222 235778899999
Q ss_pred ECCCCCeEE-EEeCCCcEEEEeCCCCCc--cee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 286 FSRSSPWAA-TGSMDQKLIIWDLQHSLP--RST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 286 ~~~~~~~l~-s~s~dg~i~iwd~~~~~~--~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
|+|++.+|+ +++.|+.|++||+..... ... ..|...+.+++|+|++.++++ .++.+++|++.++++.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 999999986 455799999999987652 222 235688999999999998875 5679999998887653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=290.76 Aligned_cols=324 Identities=15% Similarity=0.123 Sum_probs=263.5
Q ss_pred cCCcEEEEE---EcCCCCcEEE-------------EecCCC--eEEEEEcCCC--eeeEeecCcccCEEEEEEcCCCCEE
Q 016187 63 HSDEVYSVA---CSPTDATLVA-------------TGGGDD--KGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLL 122 (394)
Q Consensus 63 h~~~v~~~~---~~p~~~~~la-------------sg~~d~--~v~~w~~~~~--~~~~~~~~h~~~V~~v~~s~~g~~l 122 (394)
....++.++ |+|.+..++. +++.++ .++.|+..++ +.+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 344566677 7775443332 223334 3444444334 5555666554 45699999977788
Q ss_pred EEEeCCCcEEEEeCCCCceEEE-----EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 123 ASGGLDGLVQIWDPSSGNLKCT-----LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
++++.++.|++||+.+++.... +.+|.+.+.+++|+|++.++++++.|+.|++|++.+++.+..+..|...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8888899999999999988763 34678899999999999999999999999999999988888888899999999
Q ss_pred EECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe--------CCCcEEEEECCCC
Q 016187 198 DFTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--------KDGSVHMVNITTG 268 (394)
Q Consensus 198 ~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~--------~dg~i~i~d~~~~ 268 (394)
+|+|++++++ +++.|+.|++||+++++.+..+.. ...+.+++++|+++++++++ .|+.|++||+.++
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 9999999885 555899999999999887766553 23488999999999998887 5889999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC--------
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV-------- 339 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-------- 339 (394)
+.+..+ .|...+.+++|+|++++ +++++.++.|++||+.+........+...+.+++|+|++++|++++.
T Consensus 294 ~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 294 KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 877665 45668899999999975 56678999999999987766666667788999999999999988876
Q ss_pred -------CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC-CCcEEEEeccCC
Q 016187 340 -------DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL-DGTARVFEIADF 393 (394)
Q Consensus 340 -------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iw~~~~~ 393 (394)
||.|++||..+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|+++.|
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~~ 433 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF 433 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETTC
T ss_pred cccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecCC
Confidence 579999999999999988874 57899999999999998875 999999999865
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=290.28 Aligned_cols=253 Identities=19% Similarity=0.271 Sum_probs=218.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC--CCeeeEeecCcccCEEEEEEcCC--CCEEEEEeCCCcE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLV 131 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~--~~~~~~~~~~h~~~V~~v~~s~~--g~~l~t~s~d~~i 131 (394)
...++.+|.+.|++++|+|+ +.+||+|+.|+.|++|++. +.+.+..+.+|...|++++|+|+ +++|++|+.|+.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 45678999999999999995 6689999999999999998 55677889999999999999987 9999999999999
Q ss_pred EEEeCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECC----
Q 016187 132 QIWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTP---- 201 (394)
Q Consensus 132 ~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~---- 201 (394)
++||+.+++ ....+..|...|.+++|+|+ +.++++++.|+.|++|++.... ....+.+|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 66677889999999999999 8999999999999999998763 3445678999999999999
Q ss_pred ---------CCCeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 016187 202 ---------DGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 202 ---------~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---~~~l~~g~~dg~i~i~d~~~~ 268 (394)
++++|++++.||.|++||+++++.... ......|...+.+++|+|+ +.++++++.||.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999999999999987653321 1122236778999999999 899999999999999999886
Q ss_pred c---EEE--EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 269 K---VVS--SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 269 ~---~~~--~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
. ... ....|...|.+++|+|++.+|++++.||.|++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 4 222 2334888999999999999999999999999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.02 Aligned_cols=280 Identities=18% Similarity=0.273 Sum_probs=237.9
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCc----eEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCcc--
Q 016187 110 VSSLAFSMDGQL-LASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-- 181 (394)
Q Consensus 110 V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~-- 181 (394)
...++++|+... +++++.||.|+||++.... ....+.+|.+.|.+++|+| ++.+|++|+.|+.|++|++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 345888988754 4467899999999986542 3345678999999999999 8999999999999999999876
Q ss_pred -----ceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 182 -----AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 182 -----~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
..+..+.+|...|.+++|+|++ ++|++++.||+|++||+.+++.+..+.. ..|...+.+++|+|++.++++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTCCSCEEEEEECTTSSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCCCCceEEEEECCCCCEEEEEe
Confidence 5677888999999999999998 6999999999999999999988877721 12567899999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEe-ccCCCC-EEEEEECCCCCeEEEE---eCCCcEEEEeCCCCCc---ceeccCCCCEEEEEE
Q 016187 256 KDGSVHMVNITTGKVVSSL-VSHTDS-IECIGFSRSSPWAATG---SMDQKLIIWDLQHSLP---RSTCDHEDGVTCLMW 327 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~-~~h~~~-i~~v~~~~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~ 327 (394)
.|+.|++||+++++.+..+ ..|... +.++.|+|++.+|+++ +.|+.|++||++.... .....+...+.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 788776 8999999999999999 7999999999986533 233457788999999
Q ss_pred eCCCCEEE-EEeCCCeEEEEECCCCeE-EEEeec--ccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 328 LGTSKYVV-TGCVDGKVRVWDSLSGDC-VRTFSG--HRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 328 ~~~~~~l~-sg~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+|++++|+ +|+.||.|++|++.+++. +..+.. |..+|.+++|+|++.++++ .++.+++|++..
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99999986 555799999999998874 555554 4589999999999998864 567999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=280.93 Aligned_cols=308 Identities=15% Similarity=0.141 Sum_probs=255.0
Q ss_pred CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEE
Q 016187 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 155 (394)
..++++++.|+.|++||+.+++.+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 3578999999999999999999999888775 48999999999977 677799999999999999888877655 89999
Q ss_pred EEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 156 SWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 156 ~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
+|+|+++++ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 999999977 45667799999999998887777654 467899999999977 68888999999999999887776642
Q ss_pred CcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe---CCCcEEEEeCCC
Q 016187 234 YHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS---MDQKLIIWDLQH 309 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s---~dg~i~iwd~~~ 309 (394)
..+.+++++|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|++.++++++ .++.|++||+.+
T Consensus 158 ---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 158 ---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp ---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred ---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 457899999999877 677889999999999998877665 566889999999999998887 689999999987
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecccCcee---EEE------------EccCC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYV-VTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQ---AIS------------VSAHQ 373 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~l~------------~~~~~ 373 (394)
............+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~ 313 (391)
T 1l0q_A 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNI 313 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESC
T ss_pred CeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccc
Confidence 6555555445568899999999987 6778899999999999999999887765431 122 22221
Q ss_pred ----------CEEEEEeCCCcEEEEeccC
Q 016187 374 ----------DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 374 ----------~~l~s~s~dg~i~iw~~~~ 392 (394)
-.+.+.+.|.++++|++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 314 TSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp CSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred ccccccccceEEEEeCCCCceEEEEECCC
Confidence 2466677899999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=304.12 Aligned_cols=279 Identities=16% Similarity=0.280 Sum_probs=229.3
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---eEE
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSS---GN---LKC 143 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~---~~---~~~ 143 (394)
|+|. +..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.|++|+|||+.+ +. ...
T Consensus 35 f~~~-~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GCCC-CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred cCCc-cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 5564 34455443 487 456778888 89999999999999 999999999999999999876 33 233
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC---ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.+ .|.+.|.+++|+|++++|++++.|+.|++|++. .++....+.+| .+..+.|+|++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----------------- 166 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----------------- 166 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-----------------
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-----------------
Confidence 33 488999999999999999999999999999985 55555555555 56666666643
Q ss_pred CCCceEEEEcCCCCcccCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEEEEEECCCCCeEEEE
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLT--ISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~v~~~~~~~~l~s~ 296 (394)
+...+.++. +++++.++++|+.|+.|++||+++++.+..+.. |...|.+++|+|++.+|+++
T Consensus 167 --------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 232 (437)
T 3gre_A 167 --------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232 (437)
T ss_dssp --------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE
T ss_pred --------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE
Confidence 112344444 678999999999999999999999999999988 89999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCeEEEEeec-----------
Q 016187 297 SMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLG----TSKYVVTGCVDGKVRVWDSLSGDCVRTFSG----------- 359 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------- 359 (394)
+.||+|++||++........ .|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+.+
T Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 233 TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGS
T ss_pred cCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceec
Confidence 99999999999876554432 6777899996664 577999999999999999999999888875
Q ss_pred ---------------ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 360 ---------------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 360 ---------------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|...|++++|+ ++++|++|+.||.|++|++.+.
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred ccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 44568889998 7799999999999999998753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=284.82 Aligned_cols=287 Identities=12% Similarity=0.097 Sum_probs=215.8
Q ss_pred EEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecC
Q 016187 91 FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSE 169 (394)
Q Consensus 91 ~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~ 169 (394)
+|++.+.+.+..+.+|...|++++|+|||++|++|+.++ +++|++.+++....... ..+..+++.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 567777777777899999999999999999999998775 78999988766554432 247788899988876 67888
Q ss_pred CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 170 d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
|++|++||..+++.+..+. +...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. ....+++++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~-- 147 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN-- 147 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET--
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc--
Confidence 8999999999998888776 66789999998764 3333 4789999999887 54433322 233456666
Q ss_pred CEEEE--EeCCCcEEEEECCCCc---------------E-EEEeccCCCCEEEEEECCCCCeEEEEeCCCc-EEEEeCCC
Q 016187 249 TLALS--GSKDGSVHMVNITTGK---------------V-VSSLVSHTDSIECIGFSRSSPWAATGSMDQK-LIIWDLQH 309 (394)
Q Consensus 249 ~~l~~--g~~dg~i~i~d~~~~~---------------~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~-i~iwd~~~ 309 (394)
.++++ |+.||.|++||+.+++ + +..+.+|..+|.+++|+|++.+||+++.|++ |++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 55555 6899999999999865 1 6778899999999999999999999999998 99999987
Q ss_pred CCcceec--c-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE--EEee---------------------cccCc
Q 016187 310 SLPRSTC--D-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV--RTFS---------------------GHRDA 363 (394)
Q Consensus 310 ~~~~~~~--~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~---------------------~h~~~ 363 (394)
....... + |...|.+++|+|++++|++|+.|++|++||+..+... ..+. .+...
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 7655544 3 8899999999999999999999999999998765321 1111 11223
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
...++|++++++|++++.||.+++|++..
T Consensus 308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 308 GCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 46799999999999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=290.46 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=232.6
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEecC-----------------------------------
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGP----------------------------------- 148 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~~~----------------------------------- 148 (394)
..++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977665 57899999999998 55555432
Q ss_pred -------------------CCCEEEEEEcCCCCEE-EEecCCCeEEEEeCC--ccceeeeec--ccCcCeEEEEECCCCC
Q 016187 149 -------------------GGGVEWVSWHPRGHIV-LAGSEDSTVWMWNAD--RAAYLNMFS--GHGSSVTCGDFTPDGK 204 (394)
Q Consensus 149 -------------------~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 204 (394)
.+.|.+++|+|++++| ++++.|+.|++|++. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 2369999999999986 899999999999998 777777776 5678999999999999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEE-EEcCCCCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCcEEEE-eccCCC
Q 016187 205 TICTGSDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVNITTGKVVSS-LVSHTD 279 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~ 279 (394)
+|++|+.+|.|++|++.+++... .......|...|++++|+|+ ++++++|+.|++|++||+.+++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998776432 11112235678999999999 99999999999999999999988877 568999
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--------------------------cCCCCEEEEEEeCCCCE
Q 016187 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--------------------------DHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~ 333 (394)
.|.+++|+ ++.+|++++.|++|++||+.+....... .....|.+++|+|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 9999999999999999999876533222 12356899999999999
Q ss_pred EEEEe-CCCeEEEEEC--CCC---eEEEEeecccCceeEEEEccCCCEEEEEeC------CCcEEEEecc
Q 016187 334 VVTGC-VDGKVRVWDS--LSG---DCVRTFSGHRDAIQAISVSAHQDFLVSVSL------DGTARVFEIA 391 (394)
Q Consensus 334 l~sg~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iw~~~ 391 (394)
|++++ .++.|++|++ .++ +.+..+.+| +.|.+++|+|++.+++.++. +..|++|.+.
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99999 8999999999 666 777888888 78999999996444444343 5668999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=295.91 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=217.6
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
.-...|.+++|||||+++||++.|++|+ |...++. +.+|...|..++|+|+| .++.+.+|+.+....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~- 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL- 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCceE-
Confidence 3457899999999999999999999999 7555543 47899999999999998 456655665443322
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC--cccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
..+ +|...|.+++|+|+|++||+++.||.|++||... .+..+. +.. ....+.+++|+|+|++|++|+.||+|++
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 222 5688899999999999999999999999999543 444444 321 1346999999999999999999999999
Q ss_pred EECCCCc-------EEEEe----ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc----ee-ccCCCCEEEEE
Q 016187 263 VNITTGK-------VVSSL----VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR----ST-CDHEDGVTCLM 326 (394)
Q Consensus 263 ~d~~~~~-------~~~~~----~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~-~~~~~~v~~~~ 326 (394)
||+.+++ .+.++ .+|..+|.+++|+|++ +++++.|+++++||+...... .. ..|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9999885 36676 6678899999999999 888899999999999876532 12 36778899999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEE--ccCCCEEEEEeCCCcEEEEecc
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV--SAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|+ +++||+++ ++.|++||+.+++......+|...|..++| +|++..+++++.||+ ++|.++
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99 58999987 699999999988875444489999999999 999999999999999 999864
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=290.31 Aligned_cols=250 Identities=20% Similarity=0.351 Sum_probs=220.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC----------CeeeEeecCcccCEEEEEEcCCCC-EEEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDWASEIQGHKDSVSSLAFSMDGQ-LLASG 125 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~----------~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~ 125 (394)
.....+|.+.|++++|+|+++.+||+|+.|+.|++|++.. .+....+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 4556789999999999997678999999999999999976 567778899999999999999998 99999
Q ss_pred eCCCcEEEEeCCCCce-------EEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCe
Q 016187 126 GLDGLVQIWDPSSGNL-------KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSV 194 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v 194 (394)
+.||+|++|++.++.. ...+..|...|.+++|+| ++.++++++.|+.|++||+++. +.+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987422 356678899999999999 6789999999999999999876 5666778999999
Q ss_pred EEEEECCCCC-eEEEEeCCCcEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC----
Q 016187 195 TCGDFTPDGK-TICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITT---- 267 (394)
Q Consensus 195 ~~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~---- 267 (394)
++++|+|+++ +|++|+.||.|++||+++ .+.+..+.. |...++++.|+|++. ++++++.|+.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999887 688999999999999987 445666654 567899999999985 789999999999999986
Q ss_pred ----------CcEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 016187 268 ----------GKVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 268 ----------~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~ 309 (394)
.+.+..+.+|...|.+++|+|+++ ++++++.||.|++|++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 367788889999999999999999 899999999999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=282.56 Aligned_cols=269 Identities=12% Similarity=0.088 Sum_probs=216.0
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEE
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 155 (394)
++.+|+||+.|++|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------------- 104 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------------- 104 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------------
Confidence 45688999999999999998888877776 567888888887 88999999999998653
Q ss_pred EEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEECC--CCCeEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 156 ~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
.+.+|+..+++.++.+. +|..+|.+++|+| ++++|++++.||+|++||+++++.......+
T Consensus 105 ----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 168 (343)
T 3lrv_A 105 ----------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK 168 (343)
T ss_dssp ----------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred ----------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence 34567777666554443 6778999999999 9999999999999999999999886555432
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
+...+++++|+|++.++++|+.||.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++ |++|++||+++.
T Consensus 169 --~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 169 --SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp --SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 4456999999999999999999999999999999877 77887 999999999999999999999 559999999876
Q ss_pred Ccceecc----CCCCE--EEEEEeCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecccCceeEEEEcc---CCCEEEEEe
Q 016187 311 LPRSTCD----HEDGV--TCLMWLGTSKYVVTGCV-DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA---HQDFLVSVS 380 (394)
Q Consensus 311 ~~~~~~~----~~~~v--~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s 380 (394)
....... |...+ .+++|+|++++|++++. |+.|++|+.......... .++..+.|++ +.+.+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEe
Confidence 4432211 22333 46999999999999998 999999998655433222 4677888888 888899999
Q ss_pred CCCcEEEEe
Q 016187 381 LDGTARVFE 389 (394)
Q Consensus 381 ~dg~i~iw~ 389 (394)
.||.++++-
T Consensus 322 ~d~~~~~~~ 330 (343)
T 3lrv_A 322 GDGGIAAIL 330 (343)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999888774
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=293.39 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=204.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 223 (394)
..+.++|++++|+|++++|++|+.|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 445678999999999999999999999999999887 677888999999999999999999999999999999999887
Q ss_pred c---eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEecc-CCCCEEEEEECCCCCeEEEE
Q 016187 224 E---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK---VVSSLVS-HTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 224 ~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~-h~~~i~~v~~~~~~~~l~s~ 296 (394)
+ ....+.. |...+.+++|+|+++++++++.|+.|++||+.+++ ....+.. |...|.+++|+|++.+|+++
T Consensus 88 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 88 GTWKQTLVLLR---LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp -CCCCEEECCC---CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CceeeeeEecc---cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 6 3333333 67789999999999999999999999999999887 3677777 99999999999999999999
Q ss_pred eCCCcEEEEeCCCC------------------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----E
Q 016187 297 SMDQKLIIWDLQHS------------------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC----V 354 (394)
Q Consensus 297 s~dg~i~iwd~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~ 354 (394)
+.|++|++||+... .......|...|.+++|+|++++|++|+.||.|++||+.++++ +
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 99999999998521 1112227888999999999999999999999999999999987 7
Q ss_pred EEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 355 RTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+.+|..+|.+++|+|++++|++++.++.+ +|+..
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8899999999999999999999999877766 66543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=314.34 Aligned_cols=250 Identities=19% Similarity=0.287 Sum_probs=215.3
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC--CCeeeEeecCcccCEEEEEEcCC--CCEEEEEeCCCcEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQ 132 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~--~~~~~~~~~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~ 132 (394)
..++.+|.+.|++++|+|+ +.+|++|+.|++|++|++. +++....+.+|.++|++++|+|+ +++|++|+.||+|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3568899999999999996 5678999999999999998 55677889999999999999998 99999999999999
Q ss_pred EEeCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCcc--ceeeeecccCcCeEEEEECC-----
Q 016187 133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTP----- 201 (394)
Q Consensus 133 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~----- 201 (394)
+||+.+++ ....+..|...|.+++|+|+ ++++++|+.|+.|++||+.+. .....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999887 56677889999999999999 999999999999999999876 33455678999999999999
Q ss_pred --------CCCeEEEEeCCCcEEEEcCCCCce----EEEEcCCCCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEECC
Q 016187 202 --------DGKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 202 --------~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~---~~~l~~g~~dg~i~i~d~~ 266 (394)
++++|++|+.||+|++||++++.. ...+. .|...|++++|+|+ +.++++|+.||.|++||+.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 589999999999999999987743 33333 36778999999999 8999999999999999998
Q ss_pred CCc-----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 267 TGK-----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 267 ~~~-----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
+++ .+.....|...|.+++|+|++.++++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 864 23334458889999999999999999999999999998753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=287.90 Aligned_cols=258 Identities=10% Similarity=0.038 Sum_probs=186.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-----EEecCCCCEEEEEEcC--------CCCEEEEecCCCeEEEEeC
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-----TLEGPGGGVEWVSWHP--------RGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~s~d~~i~iw~~ 178 (394)
...+++++.+|++|+.|++|+|||..+++... .+.+|.+.|++++|+| ++++|++|+.|++|++||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 33444566789999999999999998886532 3568999999999998 7889999999999999999
Q ss_pred CccceeeeecccCcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCCCceEEEEcC----------------------CCCc
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGENIHVIRG----------------------HPYH 235 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------~~~~ 235 (394)
.++..+..+.+|..++.+++|+|++. +|++|+.|++|++||+++++....... ...|
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 88877777888999999999999874 799999999999999988765432211 1124
Q ss_pred ccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce
Q 016187 236 TEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS 314 (394)
Q Consensus 236 ~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 314 (394)
...+.++.++ |+++.+++++.|+++++||+..++....+..|...+..+.+.|+...+...
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------ 315 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF------------------ 315 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS------------------
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc------------------
Confidence 4567778876 799999999999999999999998888888888888887777764322111
Q ss_pred eccCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 315 TCDHEDGVTCLMWLG--TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
...+.+ .|++ ++.++++|+.||.|++||+.+++++..+.+|..+|++|+|+|||++||+++.+| +.+|++..
T Consensus 316 ----~~~~~~-~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 316 ----PSLLGA-CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ----CCSSCC-EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred ----CcceeE-EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 111112 2333 445778889999999999999999999999999999999999999999999776 66676654
Q ss_pred C
Q 016187 393 F 393 (394)
Q Consensus 393 ~ 393 (394)
|
T Consensus 390 f 390 (393)
T 4gq1_A 390 F 390 (393)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=273.02 Aligned_cols=277 Identities=10% Similarity=0.103 Sum_probs=215.9
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd 135 (394)
...+.+|.+.|++++|+|+ +.+||+|+.+ .+++|+...++...... ...+..+++.++++.+ ++++.|++|++||
T Consensus 12 ~~~~~~h~~~V~~v~fs~d-g~~la~g~~~-~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQD-QSCLILSTLK-SFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp -------CCCCCEEEECTT-SSEEEEECSS-EEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred ccccccCCCceEEEEECCC-CCEEEEEcCC-EEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3456789999999999995 5688888766 57899998876655433 2358889999998887 5677889999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEE--EeCC
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICT--GSDD 212 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s--~~~d 212 (394)
..+++.+..+. +...|.+++|+++. ++++ .++.+++|++.+. +.+..+.. +...+++++ .+++. |+.|
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCT
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcC
Confidence 99999988877 55689999999874 3333 4789999999887 66665554 444556777 56665 6899
Q ss_pred CcEEEEcCCCCc----------------eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEec
Q 016187 213 ATLRVWNPKSGE----------------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS-VHMVNITTGKVVSSLV 275 (394)
Q Consensus 213 g~i~vwd~~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~ 275 (394)
|.|++||+.+++ .+..+.+ |...|++++|+|+++++++|+.|++ |++||+++++++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~---h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA---HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECC---CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEc---cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 999999998765 1344443 6788999999999999999999999 9999999999999998
Q ss_pred -c-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--ec----------------------cCCCCEEEEEEeC
Q 016187 276 -S-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--TC----------------------DHEDGVTCLMWLG 329 (394)
Q Consensus 276 -~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~----------------------~~~~~v~~~~~~~ 329 (394)
+ |...|.+++|+|++.+|++++.|++|++||+....... .. ........++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 5 99999999999999999999999999999986532110 00 0112236789999
Q ss_pred CCCEEEEEeCCCeEEEEECC
Q 016187 330 TSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~ 349 (394)
++++|++++.||.+++|++.
T Consensus 316 d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEEE
Confidence 99999999999999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=281.47 Aligned_cols=280 Identities=15% Similarity=0.076 Sum_probs=228.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---eeEeecC------------------------------------
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQG------------------------------------ 105 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---~~~~~~~------------------------------------ 105 (394)
.++.+++|+|++. +|+++ .++.|++|++.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4788999999755 66554 57899999998888 5555443
Q ss_pred ------------------cccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCceEEEEe--cCCCCEEEEEEcCCCC
Q 016187 106 ------------------HKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPS--SGNLKCTLE--GPGGGVEWVSWHPRGH 162 (394)
Q Consensus 106 ------------------h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 162 (394)
|.+.|++++|+|+|++| ++++.|+.|++||+. +++.+..+. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 34479999999999996 899999999999998 888877775 5678899999999999
Q ss_pred EEEEecCCCeEEEEeCCccceee----eecccCcCeEEEEECCC---CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLN----MFSGHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (394)
+|++|+.++.+++|++.+..... .+.+|...|.+++|+|+ +++|++|+.|++|++||+.+++.+..+. ..|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~h 240 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL--FGH 240 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC--CCC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee--cCC
Confidence 99999999999999998766544 77889999999999999 9999999999999999999988776633 125
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-------------------------CCCCEEEEEECCCC
Q 016187 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-------------------------HTDSIECIGFSRSS 290 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------------------------h~~~i~~v~~~~~~ 290 (394)
...|++++|+ ++.++++|+.|++|++||+.+++++..+.. ....|.+++|+|++
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 6789999999 999999999999999999999998887753 23568999999999
Q ss_pred CeEEEEe-CCCcEEEEeC--CCC---CcceeccCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECC
Q 016187 291 PWAATGS-MDQKLIIWDL--QHS---LPRSTCDHEDGVTCLMWLGTSKYVVTGCV------DGKVRVWDSL 349 (394)
Q Consensus 291 ~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~iwd~~ 349 (394)
+++++++ .++.|++|++ ... ...........+.+++|+|++.++++++. +..|.+|.+.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999998 8999999999 333 22222222378999999996444444343 4557888643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=282.25 Aligned_cols=246 Identities=21% Similarity=0.334 Sum_probs=213.8
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCc----------cceeeeecccCcCeEEEEECCCCC-eEEEEe
Q 016187 143 CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADR----------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGS 210 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 210 (394)
.....|.+.|++++|+|+ +.++++++.+|.|++|++.. ...+..+.+|...+.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344568889999999997 67999999999999999976 566777889999999999999988 999999
Q ss_pred CCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---cEEEEeccCCC
Q 016187 211 DDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG---KVVSSLVSHTD 279 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~ 279 (394)
.||+|++||+.++.. ...+. .|...|.+++|+| ++.++++++.|+.|++||++++ +.+..+..|..
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999987432 12232 3667899999999 7789999999999999999987 56777788999
Q ss_pred CEEEEEECCCCC-eEEEEeCCCcEEEEeCCCC-C-cceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-----
Q 016187 280 SIECIGFSRSSP-WAATGSMDQKLIIWDLQHS-L-PRSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLS----- 350 (394)
Q Consensus 280 ~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~-~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~----- 350 (394)
.|++++|+|+++ ++++++.||+|++||++.. . ......|...|.++.|+|+++ +|++++.||.|++||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999999987 6899999999999999863 2 334456889999999999985 699999999999999876
Q ss_pred ---------CeEEEEeecccCceeEEEEccCCC-EEEEEeCCCcEEEEecc
Q 016187 351 ---------GDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 351 ---------~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~ 391 (394)
.+++..+.+|...|++++|+|+++ +|++++.||.|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 367788889999999999999999 99999999999999975
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=304.17 Aligned_cols=248 Identities=21% Similarity=0.329 Sum_probs=215.1
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWM 175 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~i 175 (394)
...+.+|.++|++++|+|+|++|++|+.||+|+|||+. +++....+.+|.++|.+++|+|+ ++++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999987 45667788899999999999988 899999999999999
Q ss_pred EeCCccc--eeeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcC---
Q 016187 176 WNADRAA--YLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISA--- 246 (394)
Q Consensus 176 w~~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~--- 246 (394)
|++.+++ ....+.+|...|++++|+|+ ++++++|+.||+|++||++++.. ...+.. |...+.++.++|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATI 158 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---CSSCEEEEEECCCC-
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---CCCceEEEEecCccc
Confidence 9998875 66778889999999999999 99999999999999999987733 223333 567899999999
Q ss_pred ----------CCCEEEEEeCCCcEEEEECCCC----cEEEEeccCCCCEEEEEECCC---CCeEEEEeCCCcEEEEeCCC
Q 016187 247 ----------DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRS---SPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 247 ----------~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~~~i~~v~~~~~---~~~l~s~s~dg~i~iwd~~~ 309 (394)
++.++++|+.||+|++||++++ .....+..|..+|.+++|+|+ +.++++++.||+|++||+..
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999877 566778899999999999999 89999999999999999976
Q ss_pred CC------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 310 SL------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 310 ~~------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
.. ......|...|++++|+|++++|++|+.||.|++|++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 52 222335778899999999999999999999999999874
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=273.10 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=240.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE-----eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-----EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~-----~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
..+.+++|+| ++.++++++.|+.+++||+.+++... .+.+|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 4456899999 78899999999999999999988877 45689999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe--------
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-------- 210 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------- 210 (394)
+....+..+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCcccc
Confidence 9988888888899999999999877 556689999999999888877776554 588999999999999888
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
.|+.|++||+.+++.+..+. +...+.+++++|+++ ++++++.++.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 281 ~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp CCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred CCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 58899999999887766553 344688999999997 45667899999999999998887775 6788999999999
Q ss_pred CCeEEEEeC---------------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC
Q 016187 290 SPWAATGSM---------------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV-DGKVRVWDSL 349 (394)
Q Consensus 290 ~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~ 349 (394)
++++++++. ||.|++||+.+............+.+++|+|++++|++++. |+.|++|++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 998888876 57999999987765555555677999999999999998875 9999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=283.08 Aligned_cols=254 Identities=16% Similarity=0.179 Sum_probs=204.7
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC--cccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~--h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
...+.+|.+.|++|+|+|.++.+|+||+.|++|++||++++........ +...+.+++|+|++++|++|+.|+.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 3446789999999999998788999999999999999987655443333 44568899999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcccee---eeecccCcCeEEEEECCCCCeEEEEe
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
|+. ++.+..+.+|...|.+++|+|++. ++++|+.|+.|++||+.+.+.. ....+|...|++++|+|+|++|++++
T Consensus 237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 986 455667788999999999999876 7889999999999999876543 33467999999999999999999999
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcc---cCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCcEEEEec
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHT---EGLTCLTISADSTLALSGS------------KDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~~~ 275 (394)
.||+|++||+.+++....+..+.... ..+....++|++.+++++. .++.|++||..+++++..+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 99999999999988777665443211 1223345666666666553 34679999999999988865
Q ss_pred -cCCCCEEEE-EECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 016187 276 -SHTDSIECI-GFSRSSPWAATGSMDQKLIIWDLQHSLP 312 (394)
Q Consensus 276 -~h~~~i~~v-~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 312 (394)
.|...|.++ +|+|++.+|++|+ |++|+||+++....
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 678888887 6999999999876 88999999987644
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=257.24 Aligned_cols=290 Identities=13% Similarity=0.063 Sum_probs=188.4
Q ss_pred cEEEEEEcCCCC-c-EEEEecCCCeEEEEEcCCC---eeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEE-EEeCC-
Q 016187 66 EVYSVACSPTDA-T-LVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ-IWDPS- 137 (394)
Q Consensus 66 ~v~~~~~~p~~~-~-~lasg~~d~~v~~w~~~~~---~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~-vwd~~- 137 (394)
.|.++.|-..+. . -+++++ ..+|++|+...+ +.+.++.+|..+|..+.|.||-. ++..+-.+-.++ ++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 456666655433 2 244444 589999999988 78888888888777777777432 222222111111 11110
Q ss_pred -CC----ceEEEEecCCCCEEEEEEcCCCCEEEEec--CCCeEEEEeC-CccceeeeecccCcCeEEEEECC---CCCeE
Q 016187 138 -SG----NLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNA-DRAAYLNMFSGHGSSVTCGDFTP---DGKTI 206 (394)
Q Consensus 138 -~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d~~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~---~~~~l 206 (394)
.. .......++...+..+ ++++++.+++ .|+.|++|++ .+++.+..+.+|...++.++|+| ++.+|
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 00 0000011122122222 4555555533 5888999998 44777778889999999999999 77999
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
++++.|++|||||+++++.++.+.++..+...+.+++|+|++.++++++.+.. +|
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w----------------------- 251 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KE----------------------- 251 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------------------------
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cc-----------------------
Confidence 99999999999999999999999866545567888999999998866554221 11
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCccee------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRST------CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
.+++|+.|++|++||..+...... .+|...+.+..++ +.++++|+.|++|+|||+.+++++++|++|
T Consensus 252 -----~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 252 -----SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -----eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence 245566666666666654432211 1333333333333 778999999999999999999999999999
Q ss_pred cCcee-EEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 361 RDAIQ-AISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 361 ~~~v~-~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
...+. .++|+||+++|+||+.|++||||++.
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 87665 58999999999999999999999963
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=263.33 Aligned_cols=266 Identities=15% Similarity=0.137 Sum_probs=229.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467889999999999999999888887664 58999999999876 677799999999999998888777665 899999
Q ss_pred ECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEecc
Q 016187 199 FTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 199 ~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
|+|++++|+ +++.++.|++||+.+++.+..+.. ...+.+++++|+++.+ ++++.++.|++||+.+++.+..+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC----CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 999999875 555679999999999988777663 3468899999999977 6888899999999999998888776
Q ss_pred CCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCe
Q 016187 277 HTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC---VDGKVRVWDSLSGD 352 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~iwd~~~~~ 352 (394)
+ ..+.+++|+|++.++ ++++.++.|++||++.........+...+.+++|+|++++|++++ .++.|++||+.+++
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 5 456999999999887 677889999999998876666666777899999999999999888 68999999999999
Q ss_pred EEEEeecccCceeEEEEccCCCEE-EEEeCCCcEEEEeccCC
Q 016187 353 CVRTFSGHRDAIQAISVSAHQDFL-VSVSLDGTARVFEIADF 393 (394)
Q Consensus 353 ~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iw~~~~~ 393 (394)
.+..+..|.. +.+++|+|++++| ++++.|+.|++|++...
T Consensus 236 ~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 236 ITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9999987664 7899999999977 67789999999998753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=267.62 Aligned_cols=243 Identities=14% Similarity=0.121 Sum_probs=180.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-----EeecCcccCEEEEEEcC--------CCCEEEEEeCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSM--------DGQLLASGGLD 128 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-----~~~~~h~~~V~~v~~s~--------~g~~l~t~s~d 128 (394)
.|...+....+.| +..+||+|+.|++++||+...++.. ..+.||.+.|++|+|+| ||++|||||.|
T Consensus 87 ~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ----------CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred ccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3444444444444 5678999999999999999887643 35789999999999998 89999999999
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceee----------------------
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN---------------------- 185 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~---------------------- 185 (394)
++|+|||+.++.....+..+..++.+++|+|++. +|++++.|++|++||+.+++...
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999998888888888999999999999874 89999999999999987654321
Q ss_pred ---eecccCcCeEEEEEC-CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC----------------cccCeEEEEEc
Q 016187 186 ---MFSGHGSSVTCGDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY----------------HTEGLTCLTIS 245 (394)
Q Consensus 186 ---~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~~i~~~~~~ 245 (394)
...+|...+.++.|. |+++.|++++.|+++++||+..++....+..+.. +...+. ..++
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEEC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEc
Confidence 124677888899986 7999999999999999999987765444432210 011111 2233
Q ss_pred C--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 246 A--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 246 ~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
| ++.++++|+.||+|++||+.+++.+..+..|..+|.+++|+|++++||+++.+| +.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3 445677888999999999999988888888999999999999999999998776 556654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=262.55 Aligned_cols=302 Identities=15% Similarity=0.068 Sum_probs=244.9
Q ss_pred CCcEEEEEEcCCCCcEEEEec----CCC----eEEEEEc--CCCeee--EeecCcccCEEEEEEcC--------------
Q 016187 64 SDEVYSVACSPTDATLVATGG----GDD----KGFFWRI--NQGDWA--SEIQGHKDSVSSLAFSM-------------- 117 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~----~d~----~v~~w~~--~~~~~~--~~~~~h~~~V~~v~~s~-------------- 117 (394)
...++..+|.+.+..++++|+ .|+ +++|||+ .+++.+ ..+.+|...++.+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 356777889888888888886 567 8999999 888876 45889999888888775
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC---eEEEEeCCccceeeeec
Q 016187 118 DGQLLASGGLD------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFS 188 (394)
Q Consensus 118 ~g~~l~t~s~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~---~i~iw~~~~~~~~~~~~ 188 (394)
.+..++.++.+ +.|++||+.. .....+..+...+.+++|+|+++.|++++.++ .|++||+.+++.. .+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 26667666654 7999999974 44566777888999999999999999998875 9999999988764 456
Q ss_pred ccCcCeEEEEECCCCCeEE-EEeCCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEE
Q 016187 189 GHGSSVTCGDFTPDGKTIC-TGSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHM 262 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i 262 (394)
.|...+.+++|+|+|++|+ +++.++. |++||+.+++. ..+.. +...+.+++|+|+++.+++++. ++ .|.+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~---~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC---CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC---CCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 7888899999999999887 6666655 99999988765 33433 4467899999999998888776 44 6888
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
||+.+++. ..+..+...+.+++|+|++++|++++.+ ..|.+||+.+........+. .+.+++|+|++++|++++.
T Consensus 296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 89988764 4455677789999999999999988764 58999999877655544443 7899999999999999888
Q ss_pred CC---eEEEEECCCCeEEEEeecccCceeEEEEccCCC
Q 016187 340 DG---KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 340 dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
++ .|++||+. +..++.+.+|.+.|.+++|+|...
T Consensus 374 ~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 77 89999986 666788999999999999999654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=263.45 Aligned_cols=315 Identities=11% Similarity=0.022 Sum_probs=252.1
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceEEEEecCC
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP--SSGNLKCTLEGPG 149 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~--~~~~~~~~~~~~~ 149 (394)
++|+ +.++++++.|++|.+||..+++.+.++..+.. +.+++|+|+|++|++++.|++|++||+ .+++.+.++.. .
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred cCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 6784 57889999999999999999999999884333 899999999999999999999999999 88888888774 4
Q ss_pred CCEEEEEEcC----CCCEEEEec-CCCeEEEEeCCccceeeeeccc----------C-cCeEEEEECCCCC-eEEEEeCC
Q 016187 150 GGVEWVSWHP----RGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH----------G-SSVTCGDFTPDGK-TICTGSDD 212 (394)
Q Consensus 150 ~~v~~~~~~~----~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h----------~-~~v~~~~~~~~~~-~l~s~~~d 212 (394)
..+..++|+| +++++++++ .+++|.+||..+.+.++.+..+ . ..+..+.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5678999999 999998887 4899999999998888776542 2 2688899999765 45677889
Q ss_pred CcEEEEcCCCCceEE--EEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEecc----CCCCEEEEE
Q 016187 213 ATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVS----HTDSIECIG 285 (394)
Q Consensus 213 g~i~vwd~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~----h~~~i~~v~ 285 (394)
++|.+||+.+.+.+. .+. +...+..+.|+|++++++++ ..+++|.+||+.+++++..+.. |......+
T Consensus 302 g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CeEEEEEecCCCcceeEEec----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 999999998876544 332 23346678999999977655 5689999999999998888764 54433333
Q ss_pred ECCC-CCeEEEEe-CCCcEEEEeCCC-------CCcc-eeccCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEEC
Q 016187 286 FSRS-SPWAATGS-MDQKLIIWDLQH-------SLPR-STCDHEDGVTCLMWLGTSKYVVTGC-------VDGKVRVWDS 348 (394)
Q Consensus 286 ~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~-------~dg~i~iwd~ 348 (394)
++|+ +++++++. .|++|.+||+.+ .... ....|...+..+.++|++++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 4676 66777776 589999999976 3322 2334666778899999999999987 2779999999
Q ss_pred CCCeEE-EEe--------ecccCceeEEEEccCCCEEEEE-----eCCCcEEEEeccCCC
Q 016187 349 LSGDCV-RTF--------SGHRDAIQAISVSAHQDFLVSV-----SLDGTARVFEIADFK 394 (394)
Q Consensus 349 ~~~~~~-~~~--------~~h~~~v~~l~~~~~~~~l~s~-----s~dg~i~iw~~~~~~ 394 (394)
.+++.. ..+ ..+...+..+.|+|+|+.|+.+ +.|+.|.+||.++.|
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 999877 554 3567889999999999998865 247999999988753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=259.63 Aligned_cols=237 Identities=9% Similarity=0.085 Sum_probs=192.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC
Q 016187 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193 (394)
Q Consensus 114 ~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~ 193 (394)
.+.+++.+|++|+.|++|++||+.+++.+..+. ...|..+.|+|. +++++.|+++++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 345678899999999999999999988877765 345667778887 88888899998888653
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 194 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
.+.+|++.+++.+..... .|...|.+++++| ++.++++++.||+|++||+++++.+
T Consensus 105 --------------------~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~ 162 (343)
T 3lrv_A 105 --------------------QITILDSKTNKVLREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY 162 (343)
T ss_dssp --------------------EEEEEETTTCCEEEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE
T ss_pred --------------------ceEEeecCCcceeEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 456778777775555442 2456799999999 9999999999999999999999987
Q ss_pred EEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 272 SSLVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 272 ~~~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
..... |...+.+++|+|++.+|++|+.||.|++||+++.... .... |...|++++|+|++.+|++++ ++.|++||
T Consensus 163 ~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 163 IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 66643 5568999999999999999999999999999876544 3444 899999999999999999999 55999999
Q ss_pred CCCCeEEEEeec---ccCcee--EEEEccCCCEEEEEeC-CCcEEEEecc
Q 016187 348 SLSGDCVRTFSG---HRDAIQ--AISVSAHQDFLVSVSL-DGTARVFEIA 391 (394)
Q Consensus 348 ~~~~~~~~~~~~---h~~~v~--~l~~~~~~~~l~s~s~-dg~i~iw~~~ 391 (394)
+++++++..+.. |...+. +++|+|++++|++++. |+.|++|++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp TTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 999877655443 555555 5999999999999998 9999999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=246.70 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=192.3
Q ss_pred CceeeeeccCCcEEEEEEcCC-CCcEEEEecCCCeEEEEEcCCC---------eeeEeecCcccCEEEEEEcCC--CCEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMD--GQLL 122 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~-~~~~lasg~~d~~v~~w~~~~~---------~~~~~~~~h~~~V~~v~~s~~--g~~l 122 (394)
.....+.+|...|++++|+|. ++.+|++|+.|+++++|++..+ +....+.+|...|.+++|+|+ +.+|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 346677899999999999995 4678999999999999999876 567788999999999999999 9999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEe-------------cCCCCEEEEEEcCC---CCEEEEecCCCeEEEEeCCccce--e
Q 016187 123 ASGGLDGLVQIWDPSSGNLKCTLE-------------GPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAY--L 184 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~l~~~s~d~~i~iw~~~~~~~--~ 184 (394)
++++.|+.|++||+.+++....+. .+...+.+++|+|+ +.++++++.++.+.+|+...++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 999999999999998876432221 46778999999997 88999999999998888776654 6
Q ss_pred eeecccCcCeEEEEECCCC----CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE----EeC
Q 016187 185 NMFSGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS----GSK 256 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----g~~ 256 (394)
..+.+|...|++++|+|++ ++|++|+.||.|++||++.+........ ..........++....+.. +..
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE---SLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC---cccceeccCCCccccccccccccccc
Confidence 6788999999999999998 8999999999999999987654332221 1112222233333333333 334
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
...+.+|+....+.+..+.+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 455666776677888889999999999999999999999999999999998764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=237.47 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=182.7
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCC-eEEEEEcCC--C----eeeEeecCcccCEEEEEEcCCCCEEEEEe-
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-KGFFWRINQ--G----DWASEIQGHKDSVSSLAFSMDGQLLASGG- 126 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~-~v~~w~~~~--~----~~~~~~~~h~~~V~~v~~s~~g~~l~t~s- 126 (394)
...+.+.+|..+|..|++.|+..+++..+=+.- .-.++.+.- . .....-.+|...|..+ ++|+++.+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence 567778889989999999886555544332222 222333211 1 1111124566556554 5666666644
Q ss_pred -CCCcEEEEeC-CCCceEEEEecCCCCEEEEEEcC---CCCEEEEecCCCeEEEEeCCccceeeeecccC---cCeEEEE
Q 016187 127 -LDGLVQIWDP-SSGNLKCTLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG---SSVTCGD 198 (394)
Q Consensus 127 -~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~---~~v~~~~ 198 (394)
.|+.|++|++ .+|+.+..+..|...++.++|+| ++.+|++++.|++|++||+.++++++.+.+|. ..+.+++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 5899999998 45888888888999999999999 67899999999999999999999999998754 3567789
Q ss_pred ECCCCCeE------------EEEeCCCcEEEEcCCCCceEEEEcC--CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 199 FTPDGKTI------------CTGSDDATLRVWNPKSGENIHVIRG--HPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 199 ~~~~~~~l------------~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
|+|+|+++ ++|+.|++|++||+.+++.+..+.. ...|...+.+. +.++.++++|+.|++|+|||
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEE
Confidence 99999876 6688999999999999987765421 11233333333 33478899999999999999
Q ss_pred CCCCcEEEEeccCCCCEE-EEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 265 ITTGKVVSSLVSHTDSIE-CIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~-~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
+.+++++.++.+|...+. +++|+|++++|++|+.|++|+|||+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999987655 6899999999999999999999985
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=264.75 Aligned_cols=320 Identities=12% Similarity=0.093 Sum_probs=245.7
Q ss_pred CCcEEEEEEcCCCCcEEEEecC-CC-----eEEEEEcCCCeeeEeecCccc------------------------CEEEE
Q 016187 64 SDEVYSVACSPTDATLVATGGG-DD-----KGFFWRINQGDWASEIQGHKD------------------------SVSSL 113 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~-d~-----~v~~w~~~~~~~~~~~~~h~~------------------------~V~~v 113 (394)
...|.+++|+|+ +.+||+++. |+ .+++|++.+++....+..|.. .|.++
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 446899999995 567777777 88 899999999987777665543 38899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC
Q 016187 114 AFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG 191 (394)
Q Consensus 114 ~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~ 191 (394)
+|||||++|++++. +.|++||+.++. ....+..+...+..++|+|+|++|+.++ ++.|++|++.+++..+....+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 99999999999886 899999999882 3334566777899999999999998887 4699999998877655544443
Q ss_pred cC----------------eEEEEECCCCCeEEEEeCCC---------------------------------cEEEEcCCC
Q 016187 192 SS----------------VTCGDFTPDGKTICTGSDDA---------------------------------TLRVWNPKS 222 (394)
Q Consensus 192 ~~----------------v~~~~~~~~~~~l~s~~~dg---------------------------------~i~vwd~~~ 222 (394)
.. +..++|+|||++|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 32 36789999999999988776 789999988
Q ss_pred -CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeccCCC----CEEEEEECCCCCe
Q 016187 223 -GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVVSSLVSHTD----SIECIGFSRSSPW 292 (394)
Q Consensus 223 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~h~~----~i~~v~~~~~~~~ 292 (394)
++....... ..+...+..++| |+|+.+++++. +..|++||+.+++....+..+.. .+..++|+|++++
T Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 273 QAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 765433221 124566889999 99999887653 56899999999987766655443 4568899999999
Q ss_pred EEEEeCCCcEEEEeCC--CCCcceeccCCCCEEEE-EEeCCCCEEEE-EeCCC--eEEEEECCC-CeEEEEeecccCcee
Q 016187 293 AATGSMDQKLIIWDLQ--HSLPRSTCDHEDGVTCL-MWLGTSKYVVT-GCVDG--KVRVWDSLS-GDCVRTFSGHRDAIQ 365 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~v~~~-~~~~~~~~l~s-g~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~ 365 (394)
+++++.||.++||.+. .. ......+...+..+ .|+|++++|+. ++.++ .+++|++.. +..+..+.. ...+.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~ 428 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMH 428 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEE
T ss_pred EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCce
Confidence 9999999988887654 33 34444566678776 59999987754 55555 899998764 666777776 66788
Q ss_pred EEEEccCCCEEEEEeCC----CcEEEEec
Q 016187 366 AISVSAHQDFLVSVSLD----GTARVFEI 390 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s~d----g~i~iw~~ 390 (394)
.++|+||+++|+....+ ..+.+|+.
T Consensus 429 ~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 429 SASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 99999999988865443 45777764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=267.28 Aligned_cols=327 Identities=13% Similarity=0.108 Sum_probs=256.7
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecC------CCeEEEEEcCCCeeeEeecCcccCE-------EEEEEcCCCCEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGG------DDKGFFWRINQGDWASEIQGHKDSV-------SSLAFSMDGQLLA 123 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~------d~~v~~w~~~~~~~~~~~~~h~~~V-------~~v~~s~~g~~l~ 123 (394)
...+.+|...|.+++|||+ ++.||+++. +..+++|++.+++ ...+..|...+ .+++|||||++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp EEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred EEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 4567889999999999996 556666543 3479999998877 56788898888 9999999999888
Q ss_pred EEeCC------CcEEEEeCCCCceE-------------------------------------------------EEEecC
Q 016187 124 SGGLD------GLVQIWDPSSGNLK-------------------------------------------------CTLEGP 148 (394)
Q Consensus 124 t~s~d------~~i~vwd~~~~~~~-------------------------------------------------~~~~~~ 148 (394)
+++.+ ..|.+|++.+++.. ..+.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 88754 35777876555422 122345
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 227 (394)
...+.++.|+++ .++++++.++.+.+|.+.. +.....+..|. .+...+|+|+|++|+.+ .++.|.+||+.. ..+.
T Consensus 203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~ 278 (1045)
T 1k32_A 203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKIE 278 (1045)
T ss_dssp SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCEE
T ss_pred CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEee
Confidence 667778888887 6677788888888887643 33344455554 35567999999999887 489999999844 3343
Q ss_pred EEcCCC--------CcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC-CEEEEEECCCCCeEEEEe
Q 016187 228 VIRGHP--------YHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SIECIGFSRSSPWAATGS 297 (394)
Q Consensus 228 ~~~~~~--------~~~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-~i~~v~~~~~~~~l~s~s 297 (394)
.+.... .+...+..++|+ |+|+.+++++ ++.|.+|++..++.. .+..|.. .+..++|+ +++.+++++
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE
T ss_pred eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE
Confidence 433211 022357889999 9999988887 789999999887754 4666777 89999999 999999999
Q ss_pred CCCcEE-EEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEE
Q 016187 298 MDQKLI-IWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFL 376 (394)
Q Consensus 298 ~dg~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 376 (394)
.++.+. +|++..........|...+..++|+|++++|++++.++.|++||+.+++....+.+|.+.+..++|+||+++|
T Consensus 356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence 888888 9998876555555677789999999999999999999999999999999888888999999999999999999
Q ss_pred EEEeCCC----------cEEEEeccC
Q 016187 377 VSVSLDG----------TARVFEIAD 392 (394)
Q Consensus 377 ~s~s~dg----------~i~iw~~~~ 392 (394)
++++.++ .|++|++..
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EEEecCccccccCCCCCeEEEEECCC
Confidence 9887754 899999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-29 Score=238.79 Aligned_cols=299 Identities=13% Similarity=0.094 Sum_probs=237.5
Q ss_pred eeeee-ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc--CCCeeeEeecCcccCEEEEEEcC----CCCEEEEEeC-C
Q 016187 57 THIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRI--NQGDWASEIQGHKDSVSSLAFSM----DGQLLASGGL-D 128 (394)
Q Consensus 57 ~~~~~-~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~--~~~~~~~~~~~h~~~V~~v~~s~----~g~~l~t~s~-d 128 (394)
...+. +|. +..++|+|+ +++|++++.|++|++||+ .+++.+.++.. ...+..++|+| +|++|++++. +
T Consensus 172 ~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 172 VKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp EEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred EEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 44444 443 899999995 567778888999999999 88888888884 45679999999 9999998884 8
Q ss_pred CcEEEEeCCCCceEEEEecC-----------CCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceee--eecccCcCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGP-----------GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSV 194 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~--~~~~h~~~v 194 (394)
++|.+||..+++.+..+..+ ...+..+.++|++. ++++...++.|.+||..+.+.+. .+ .+...+
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~ 326 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFL 326 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSC
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCc
Confidence 99999999999988877642 23688999999776 56777889999999998765433 33 355667
Q ss_pred EEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEEEEcCCC-CcccCeEEEEEcCC-CCEEEEEe-CCCcEEEEECCC---
Q 016187 195 TCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISAD-STLALSGS-KDGSVHMVNITT--- 267 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~g~-~dg~i~i~d~~~--- 267 (394)
..++|+|+|++|+++ ..+++|.+||+.+++.+..+.... .|......+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 789999999987655 568999999999999887776321 132222233 4676 66667765 689999999988
Q ss_pred ----CcEEEEeccCCCCEEEEEECCCCCeEEEEe-------CCCcEEEEeCCCCCcc-ee---------ccCCCCEEEEE
Q 016187 268 ----GKVVSSLVSHTDSIECIGFSRSSPWAATGS-------MDQKLIIWDLQHSLPR-ST---------CDHEDGVTCLM 326 (394)
Q Consensus 268 ----~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~-~~---------~~~~~~v~~~~ 326 (394)
.+++.++..|...+..++++|++++|++++ .+++|.+||+.+.... .. ..+...+..+.
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 899999999988889999999999999987 2779999999876544 22 13467799999
Q ss_pred EeCCCCEEEEEe-----CCCeEEEEECCCCeEEEEeeccc
Q 016187 327 WLGTSKYVVTGC-----VDGKVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 327 ~~~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~h~ 361 (394)
|+|+|++|..+. .++.|.|||..|++++++++...
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence 999999998763 47999999999999999998644
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=242.48 Aligned_cols=277 Identities=13% Similarity=0.105 Sum_probs=221.1
Q ss_pred ccCEEEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCceE--EEEecCCCCEEEEEEcC--------------
Q 016187 107 KDSVSSLAFSMDGQ-LLASGG----LDG----LVQIWDP--SSGNLK--CTLEGPGGGVEWVSWHP-------------- 159 (394)
Q Consensus 107 ~~~V~~v~~s~~g~-~l~t~s----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 159 (394)
...|....|++.|. ++++|+ .+| ++++||+ .+++.+ ..+.++...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888988885 666876 467 8999999 888876 44777777676666654
Q ss_pred CCCEEEEecCC------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC---cEEEEcCCCCceEEEEc
Q 016187 160 RGHIVLAGSED------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---TLRVWNPKSGENIHVIR 230 (394)
Q Consensus 160 ~~~~l~~~s~d------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~ 230 (394)
.+..++.++.+ +.|++||.... ..+.+.+|...+.+++|+|+|++|++++.++ .|++||+.+++... +.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee
Confidence 14555555543 79999999754 4567778999999999999999999999885 99999999887653 33
Q ss_pred CCCCcccCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CC--cEEE
Q 016187 231 GHPYHTEGLTCLTISADSTLAL-SGSKDGS--VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQ--KLII 304 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~-~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg--~i~i 304 (394)
. +...+.+++|+|+++.++ +++.++. |++||+.+++. ..+..|...+.+++|+|++++|++++. ++ .|.+
T Consensus 220 ~---~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 220 S---FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp C---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred c---CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 3 345789999999999777 6666655 99999998876 567788889999999999999988876 44 6777
Q ss_pred EeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 305 WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 305 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
||+..........+...+.+++|+|++++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|++++|++++.
T Consensus 296 ~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 296 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp EETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred EECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 898876655555566778899999999999988764 58999999988774 566665 8899999999999999988
Q ss_pred CC---cEEEEecc
Q 016187 382 DG---TARVFEIA 391 (394)
Q Consensus 382 dg---~i~iw~~~ 391 (394)
++ .|++|++.
T Consensus 374 ~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 374 QGMGSVLNLVSTD 386 (415)
T ss_dssp ETTEEEEEEEETT
T ss_pred CCCccEEEEEECC
Confidence 77 79999875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=256.21 Aligned_cols=322 Identities=14% Similarity=0.124 Sum_probs=254.5
Q ss_pred eeeeeccCCcE-------EEEEEcCCCCcEEEEecCC------CeEEEEEcCCCeee-----------------------
Q 016187 57 THIFSGHSDEV-------YSVACSPTDATLVATGGGD------DKGFFWRINQGDWA----------------------- 100 (394)
Q Consensus 57 ~~~~~~h~~~v-------~~~~~~p~~~~~lasg~~d------~~v~~w~~~~~~~~----------------------- 100 (394)
...+.+|...+ ..++|+|++. ++++++.+ ..+++|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~ 170 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 170 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence 55677888888 9999999765 77887754 45777877554422
Q ss_pred --------------------------EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEecCCCCEE
Q 016187 101 --------------------------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVE 153 (394)
Q Consensus 101 --------------------------~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~ 153 (394)
..+.+|...+.++.|+++ .++++++.++.++||.+.. +.....+..+. .+.
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 123467788889999988 6777888889999997643 33344454444 456
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-----------cCcCeEEEEEC-CCCCeEEEEeCCCcEEEEcCC
Q 016187 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFT-PDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~ 221 (394)
..+|+|+++.++.+ .++.|++|++...+. ..+.+ |...+.+++|+ |+|++|++++ ++.|.+|++.
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 67999999988877 589999999854433 34443 34468899999 9999999888 7899999998
Q ss_pred CCceEEEEcCCCCccc-CeEEEEEcCCCCEEEEEeCCCcEE-EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 222 SGENIHVIRGHPYHTE-GLTCLTISADSTLALSGSKDGSVH-MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~g~~dg~i~-i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+++... +.. +.. .+..+.|+ +++.++.++.++.+. +|++.+++.. .+..|...+..++|+|++++|++++.+
T Consensus 326 ~~~~~~-~~~---~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 326 GTYVLK-VPE---PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp SSBEEE-CSC---CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCceEE-ccC---CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCC
Confidence 776433 332 334 68889999 999999988888898 9999887654 444788899999999999999999999
Q ss_pred CcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCC----------eEEEEECCCCeEEEEeecccCceeEEE
Q 016187 300 QKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDG----------KVRVWDSLSGDCVRTFSGHRDAIQAIS 368 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~l~ 368 (394)
+.|++||+.+....... .|...+.+++|+|++++|++++.++ .|++||+.+++ +..+..|...+..++
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~ 478 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPA 478 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCce
Confidence 99999999877655554 6777889999999999999887654 89999999887 677888988899999
Q ss_pred EccCCCEEEEEeCCCcEEEEecc
Q 016187 369 VSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 369 ~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|+|||++|+.++.++..++|+..
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSS
T ss_pred EcCCCCEEEEEecccCCcCcchh
Confidence 99999999999998888888753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=253.07 Aligned_cols=311 Identities=12% Similarity=0.090 Sum_probs=229.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCccc---CEEEEEEcCCCCEEEEEeCC---------CcEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGLD---------GLVQI 133 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~l~t~s~d---------~~i~v 133 (394)
.+.+++|+|++ .++++ +.|+++++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 35678999965 46665 7899999999999988888887765 49999999999999999875 77889
Q ss_pred EeCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCe----------------
Q 016187 134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV---------------- 194 (394)
Q Consensus 134 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v---------------- 194 (394)
||+.+++. ..+. .+...+..++|+|+|+.|+.++. +.|++|++.+++..+....+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 2333 23334788999999999988876 799999998877666555443333
Q ss_pred --EEEEECCCCCeEEEEeCCC----------------------------------cEEEEcCCCCceEEEEcCCC---Cc
Q 016187 195 --TCGDFTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENIHVIRGHP---YH 235 (394)
Q Consensus 195 --~~~~~~~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~---~~ 235 (394)
.+++|+|||++|++++.|+ .|++||+.+++....+..+. .+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 7899999999999887653 79999998887544444321 12
Q ss_pred ccCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEecc-CCCCEE----EEEECCCCCeEEE--EeCCC----
Q 016187 236 TEGLTCLTISADSTLALSGSK----DGSVHMVNITTGKVVSSLVS-HTDSIE----CIGFSRSSPWAAT--GSMDQ---- 300 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~-h~~~i~----~v~~~~~~~~l~s--~s~dg---- 300 (394)
...+..++|+|||+++++... +..|++||+.+++....+.. +...+. .++|+|++++|+. +..++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 446889999999998876643 35799999999987665543 334443 7899999997765 45677
Q ss_pred --cEEEEe-CCCCC---cceeccCCCCEEE-EEEeCCCCEEEEEeCC---CeEEEEECCCC--eEEEEeec---ccCcee
Q 016187 301 --KLIIWD-LQHSL---PRSTCDHEDGVTC-LMWLGTSKYVVTGCVD---GKVRVWDSLSG--DCVRTFSG---HRDAIQ 365 (394)
Q Consensus 301 --~i~iwd-~~~~~---~~~~~~~~~~v~~-~~~~~~~~~l~sg~~d---g~i~iwd~~~~--~~~~~~~~---h~~~v~ 365 (394)
.|.+|| ..... ..........+.. +.|+|++++|+..+.+ +.+++|++... .....+.. |...+.
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF 413 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeE
Confidence 577777 34433 3333323334544 6899999999766655 78999987543 23444554 677789
Q ss_pred EEEEccCCCEEEEEe
Q 016187 366 AISVSAHQDFLVSVS 380 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s 380 (394)
.++|+||+++|+...
T Consensus 414 ~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 414 SASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEc
Confidence 999999999887643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-27 Score=212.52 Aligned_cols=275 Identities=13% Similarity=0.084 Sum_probs=206.3
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCccce-eeeecc
Q 016187 113 LAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAY-LNMFSG 189 (394)
Q Consensus 113 v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~-~~~~~~ 189 (394)
..|.+++.+ +++++.++.|++||+.+++....+..+...+ .++|+|+++++++++ .++.|++||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 356666655 6788889999999999999888777666667 999999999665555 489999999998887 666666
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCC---cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE-EEeCCCc-EEEEE
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGS-VHMVN 264 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~g~~dg~-i~i~d 264 (394)
+..+..+++|+|+|++|+++..++ .|++||+.+++.+..+.. ......++++|++++++ ++..++. |.+|+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 666665599999999999655553 899999999887776653 23468999999998554 4556688 99999
Q ss_pred CCCCcEE----EEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCc---ceeccCCCCEEEEEEeCCCCEEEE
Q 016187 265 ITTGKVV----SSLVSHTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLP---RSTCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 265 ~~~~~~~----~~~~~h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s 336 (394)
+.....+ .........+..++|+|++++++ ++..++.|.+||+.+... .........+..++|+|++++|++
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEE
Confidence 8754322 12223445689999999999655 455689999999987665 444445566788999999997776
Q ss_pred Ee-CCCeEEEEECCCCeE--EEEeecc----cCc---eeEEEEccCCCEEEEEe-CCCcEEEEeccC
Q 016187 337 GC-VDGKVRVWDSLSGDC--VRTFSGH----RDA---IQAISVSAHQDFLVSVS-LDGTARVFEIAD 392 (394)
Q Consensus 337 g~-~dg~i~iwd~~~~~~--~~~~~~h----~~~---v~~l~~~~~~~~l~s~s-~dg~i~iw~~~~ 392 (394)
++ .++.|.+||..+++. +..+..+ ... ...++|+|++++|+.++ .++.|++|++..
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 65 578899999999887 4444432 222 35589999999886554 567999999875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-27 Score=213.41 Aligned_cols=279 Identities=8% Similarity=0.011 Sum_probs=208.1
Q ss_pred EEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCce-EEEEecC
Q 016187 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNL-KCTLEGP 148 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~i~vwd~~~~~~-~~~~~~~ 148 (394)
.|.+....++++.+.++.|++||..+++....+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 3556667788999999999999999999888887777777 9999999997766665 88999999999987 6666666
Q ss_pred CCCEEEEEEcCCCCEEEEecCCC---eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCc-EEEEcCCCC
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT-LRVWNPKSG 223 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~---~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~-i~vwd~~~~ 223 (394)
..+...++|+|++++++++..++ .|++|++.+++.+..+..+ ..+.+++|+|+|++|+++ ..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 66655599999999988665553 8999999988877776544 456899999999866544 55688 999998754
Q ss_pred ceEEEEc-CCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcE---EEEeccCCCCEEEEEECCCCCeEEEEe-
Q 016187 224 ENIHVIR-GHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKV---VSSLVSHTDSIECIGFSRSSPWAATGS- 297 (394)
Q Consensus 224 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~v~~~~~~~~l~s~s- 297 (394)
..+.... ...........++++|+++++ +++..++.|.+||+.+++. +..+.. ...+..++|+|++++++.++
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc
Confidence 4332111 000123457899999999855 4555789999999998887 766654 36678899999999776554
Q ss_pred CCCcEEEEeCCCCCccee--c-----cCC---CCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCe
Q 016187 298 MDQKLIIWDLQHSLPRST--C-----DHE---DGVTCLMWLGTSKYVVTGCV-DGKVRVWDSLSGD 352 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~~~--~-----~~~---~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~ 352 (394)
.++.|.+||+.+...... . .+. .....++|+|++++|++++. ++.|++||+....
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 578899999986543111 0 011 12356899999998866554 6799999987654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-28 Score=240.44 Aligned_cols=314 Identities=12% Similarity=0.109 Sum_probs=224.9
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-EeecCcc-----------------cCEEEEEEcCCCCEEEEEeCC
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQGHK-----------------DSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-~~~~~h~-----------------~~V~~v~~s~~g~~l~t~s~d 128 (394)
++.+.|. +.. +++++.|+ | +||+.+++.+ ..+..|. ..|.+++|||| ++++.+ .+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQ 100 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ET
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-EC
Confidence 3446676 344 44555666 7 9999998873 4444443 56999999999 665555 35
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-----cceeeeecccCcC----------
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSS---------- 193 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-----~~~~~~~~~h~~~---------- 193 (394)
+.|++||+.+++... +..+...+..++|+|+|+.|+++ .++.|++|++.+ ++..+....+...
T Consensus 101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 999999999887654 34456678889999999998885 679999999987 7655544444332
Q ss_pred ----eEEEEECCCCCeEEEEe---------------------------------CCCcEEEEcCCCCceEEEEcCCCCcc
Q 016187 194 ----VTCGDFTPDGKTICTGS---------------------------------DDATLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 194 ----v~~~~~~~~~~~l~s~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
+.+++|+|||++|++++ .+..|++||+.+++...... ...+.
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~ 257 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKE 257 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-CSCTT
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-CCCCc
Confidence 47889999999999987 44679999998877543322 11244
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEec--cCCC---CEEEEEECC--CCCeEEEEeCCCcEEE
Q 016187 237 EGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVVSSLV--SHTD---SIECIGFSR--SSPWAATGSMDQKLII 304 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~--~h~~---~i~~v~~~~--~~~~l~s~s~dg~i~i 304 (394)
..+.+++|+|+++.+++++.++ .|++||+.+++....+. .+.. .+.++.|+| +++++++++.|+.++|
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 5689999999999999887765 89999999984433332 1222 346789999 9999999999999999
Q ss_pred EeCC--CCCcceeccCCCCEEE-EEEeCCCCEEEEEeC-CC----eEEEEECCCCeEEEEeecccCceeEEEEccCCCEE
Q 016187 305 WDLQ--HSLPRSTCDHEDGVTC-LMWLGTSKYVVTGCV-DG----KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFL 376 (394)
Q Consensus 305 wd~~--~~~~~~~~~~~~~v~~-~~~~~~~~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 376 (394)
|.+. .........+...+.. ++|+|+++.|+.++. ++ .|+.||..+++ +..+. |...+..++|+||+++|
T Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEE
T ss_pred EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEE
Confidence 9764 2223333455566766 799999988766554 44 67778887766 44454 67779999999999988
Q ss_pred EEEeCC----CcEEEEeccC
Q 016187 377 VSVSLD----GTARVFEIAD 392 (394)
Q Consensus 377 ~s~s~d----g~i~iw~~~~ 392 (394)
+..+.+ +.|++|++..
T Consensus 416 ~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 416 IDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECSSCSCEEEEEESSS
T ss_pred EEEecCCCCCcEEEEEECCC
Confidence 876443 5699999764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-27 Score=215.16 Aligned_cols=293 Identities=15% Similarity=0.202 Sum_probs=207.6
Q ss_pred CCcEEEEecCCCeEEEEEcC-CCe--eeEeecCcccCEEEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCce--EEEEec
Q 016187 76 DATLVATGGGDDKGFFWRIN-QGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPS--SGNL--KCTLEG 147 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~-~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vwd~~--~~~~--~~~~~~ 147 (394)
...++++++.|+.+++|++. +++ .+.. ..|...+.+++|+|+|++|++++.+ +.|++|++. +++. +..+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 34567777889999999985 332 2333 3477789999999999999988876 999999987 5553 334444
Q ss_pred CCCCEEEEEEcCCCCEEEEec-CCCeEEEEeC---CccceeeeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCC
Q 016187 148 PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNA---DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKS 222 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~ 222 (394)
+. .+..++|+|+++++++++ .++.|.+|++ ...+....+..+ ..+.+++|+|++++|++++ .++.|++||+.+
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 33 778899999999776555 5889999999 444445555444 3578899999999888777 899999999987
Q ss_pred -CceEE----EEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC--CcE--EEEec---cC---CCCEEEEEE
Q 016187 223 -GENIH----VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITT--GKV--VSSLV---SH---TDSIECIGF 286 (394)
Q Consensus 223 -~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~--~~~--~~~~~---~h---~~~i~~v~~ 286 (394)
++... .+... ....+..++++|++++++++ ..++.|.+|++.. ++. ...+. .. ...+..++|
T Consensus 161 ~~~~~~~~~~~~~~~--~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp TSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred CCceeeecccccccC--CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence 54322 12211 23468889999999976554 5889999999953 432 22222 11 235678999
Q ss_pred CCCCCeEE-EEeCCCcEEEEeCCC--CC--cceeccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEE--ECCCCeE--EEE
Q 016187 287 SRSSPWAA-TGSMDQKLIIWDLQH--SL--PRSTCDHEDGVTCLMWLGTSKYVVTGC-VDGKVRVW--DSLSGDC--VRT 356 (394)
Q Consensus 287 ~~~~~~l~-s~s~dg~i~iwd~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iw--d~~~~~~--~~~ 356 (394)
+|++++|+ ++..++.|.+|++.. .. ..........+..++|+|++++|++++ .++.|.+| |..+++. +..
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence 99998877 455789999999973 21 111222223478899999999988887 58999999 5556643 445
Q ss_pred eecccCceeEEEEccCCC
Q 016187 357 FSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 357 ~~~h~~~v~~l~~~~~~~ 374 (394)
+... ....+++|.++.+
T Consensus 319 ~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 319 YAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp EECS-SSCCEEEEEEEC-
T ss_pred cccC-CCCeeEEEEcccC
Confidence 5543 3456788887644
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=237.31 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=216.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----C
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-----G 139 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-----~ 139 (394)
..|.+++|+|+ +.++++. ++.+++||+.+++... +..+...+.+++|||||++|+.+ .++.|++|++.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999997 6666653 5999999998887654 44567789999999999999985 689999999998 7
Q ss_pred ceEEEEecCCCC--------------EEEEEEcCCCCEEEEec---------------------------------CCCe
Q 016187 140 NLKCTLEGPGGG--------------VEWVSWHPRGHIVLAGS---------------------------------EDST 172 (394)
Q Consensus 140 ~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~s---------------------------------~d~~ 172 (394)
+.......+... +..++|+|++++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 765433333332 47899999999999887 4568
Q ss_pred EEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCC-----cEEEEcCCCCceEEEEcC--CCCcccCeEEEE
Q 016187 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIHVIRG--HPYHTEGLTCLT 243 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~~~~i~~~~ 243 (394)
|++||+.+++...... .|...+.+++|+|+|++|++++.++ .|++||+.+++....+.. .......+..+.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999998877544432 4667789999999999999988776 899999998844333321 111111235678
Q ss_pred EcC--CCCEEEEEeCCCcEEEEECC-CCcEEEEeccCCCCEEE-EEECCCCCeEEEEeCC-C----cEEEEeCCCCCcce
Q 016187 244 ISA--DSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIEC-IGFSRSSPWAATGSMD-Q----KLIIWDLQHSLPRS 314 (394)
Q Consensus 244 ~~~--~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~-v~~~~~~~~l~s~s~d-g----~i~iwd~~~~~~~~ 314 (394)
|+| +++++++++.++.+++|.+. +++.+..+..|...+.. ++|+|+++.|+.++.+ + .|..||+.+... .
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~ 395 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K 395 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e
Confidence 999 99999999999999999876 67777888888888876 7999999887665544 4 566677766543 3
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCe
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVD----GKVRVWDSLSGD 352 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~iwd~~~~~ 352 (394)
...+...+.+++|+|++++++..+.+ +.|++||+.+++
T Consensus 396 ~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 DLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 34467779999999999998876544 569999998887
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=212.84 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=215.0
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcc-c-CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCC-----
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHK-D-SVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPG----- 149 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~-~-~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~----- 149 (394)
.++++++.++.+++||+.+++.+..+.... . .+..++|+|+|+++ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 468889999999999999999888776322 2 47899999999876 455667899999999998877665322
Q ss_pred CCEEEEEEcCCCCEEEEec------------CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s------------~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
..+..++|+|+++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 1466789999999888876 579999999998877766654 4456788999999988888 689999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCcEE-E
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG------------------------SVHMVNITTGKVV-S 272 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg------------------------~i~i~d~~~~~~~-~ 272 (394)
||+.+++....+..... ..+ +.++|++..++..+..+ .|.+||+.+++.. .
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred EECCCCcEeeeeecccc-CCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 99999887766654321 112 25788887665544332 4689999998764 2
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
.+..+...+.+++|+|++.+++++ ++.|.+||+.+............+.+++|+|++++|++++.++.|++||+.+++
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 344566778899999999999888 799999999876554444445567899999999999999999999999999999
Q ss_pred EEEEeeccc
Q 016187 353 CVRTFSGHR 361 (394)
Q Consensus 353 ~~~~~~~h~ 361 (394)
.+..+..+.
T Consensus 313 ~~~~~~~~~ 321 (337)
T 1pby_B 313 KKGQVDLPG 321 (337)
T ss_dssp EEEEEECGG
T ss_pred EEEEEEcCC
Confidence 998887554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=242.62 Aligned_cols=281 Identities=10% Similarity=0.135 Sum_probs=218.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCceEEEEecCCC------------------------CEEEEE
Q 016187 107 KDSVSSLAFSMDGQLLASGGL-DG-----LVQIWDPSSGNLKCTLEGPGG------------------------GVEWVS 156 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~-d~-----~i~vwd~~~~~~~~~~~~~~~------------------------~v~~~~ 156 (394)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999987766654332 277899
Q ss_pred EcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC
Q 016187 157 WHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 157 ~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 234 (394)
|+|++++|++++. +.|++|++.++. ....+..|...+.+++|+|||++|+.++ ++.|++||+.+++..........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999988886 999999998872 3455667888899999999999999887 46899999988765443222110
Q ss_pred c-------------ccCeEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q 016187 235 H-------------TEGLTCLTISADSTLALSGSKDG---------------------------------SVHMVNITT- 267 (394)
Q Consensus 235 ~-------------~~~i~~~~~~~~~~~l~~g~~dg---------------------------------~i~i~d~~~- 267 (394)
. ...+..+.|+|||++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 00146789999999999987765 789999988
Q ss_pred CcEEEEec--cCCCCEEEEEECCCCCeEEEEeC-----CCcEEEEeCCCCCcceecc-CCC----CEEEEEEeCCCCEEE
Q 016187 268 GKVVSSLV--SHTDSIECIGFSRSSPWAATGSM-----DQKLIIWDLQHSLPRSTCD-HED----GVTCLMWLGTSKYVV 335 (394)
Q Consensus 268 ~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~-~~~----~v~~~~~~~~~~~l~ 335 (394)
++...... .|...+..++| |++++|+.++. +..|.+||+.+........ +.. .+..++|+|++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 77554332 47778999999 99999987654 5679999998765544332 221 345789999999999
Q ss_pred EEeCCCeEEEEECC-CCeEEEEeecccCceeEE-EEccCCCEEE-EEeCCC--cEEEEecc
Q 016187 336 TGCVDGKVRVWDSL-SGDCVRTFSGHRDAIQAI-SVSAHQDFLV-SVSLDG--TARVFEIA 391 (394)
Q Consensus 336 sg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l-~~~~~~~~l~-s~s~dg--~i~iw~~~ 391 (394)
+++.+|.++||.+. +++ ...+..|...|..+ .|+|+++.|+ +++.++ .+++|++.
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999988887654 455 77888888889887 5999999775 455555 89999875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-26 Score=208.13 Aligned_cols=276 Identities=12% Similarity=0.092 Sum_probs=217.8
Q ss_pred cCCcEEEEEEcCCCCcEEEEecC------CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEe
Q 016187 63 HSDEVYSVACSPTDATLVATGGG------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWD 135 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~------d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd 135 (394)
....++.++++|++..++++... ++.+.+||..+++.+..+.. ...+..++|+|+|++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 34578899999976665555433 67899999999988887764 34478899999999655 555679999999
Q ss_pred CCCCceEEEEecCCCC---------EEEEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC
Q 016187 136 PSSGNLKCTLEGPGGG---------VEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
..+++.+..+..+... +..++|+|+++.+++++ .++.|++||..+++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999988777654322 68899999999776665 578999999999888887775666678899999999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCC-CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccCCCCEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHTDSIE 282 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~h~~~i~ 282 (394)
+|++++.++.|.+||+.+++....+.... .+...+..++++|+++++++++. ++.|.+||+.+++.+..+.... ..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~ 275 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL 275 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence 99999999999999999998777665422 13445788999999997766654 5999999999999887776543 25
Q ss_pred EEEECCCCCeEEEEe-CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 283 CIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.++|+|++.+++.++ .++.|.+||+.+............+.+++|+|++++|+.+..++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 689999999655554 68999999998776555555556789999999999887776554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-26 Score=205.40 Aligned_cols=271 Identities=13% Similarity=0.084 Sum_probs=214.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEe
Q 016187 106 HKDSVSSLAFSMDGQLLASGGL-------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWN 177 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~-------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~ 177 (394)
....+..++|+|+|+++++++. ++.|.+||..+++....+... ..+..++|+|+++.+ ++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999888874 568999999999988777643 346778999999854 5566689999999
Q ss_pred CCccceeeeecccCcC---------eEEEEECCCCCeEEEEe--CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 178 ADRAAYLNMFSGHGSS---------VTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
..+++.+..+..+... +.+++|+|+++++++++ .++.|.+||+.+++....+... ...+..+.++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~s~ 194 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT---GKMSTGLALDS 194 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC---CTTCCCCEEET
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC---CCccceEEECC
Confidence 9998877776654322 68899999999887765 4789999999999887776522 23466789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecc----CCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCcceeccCCCC
Q 016187 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVS----HTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLPRSTCDHEDG 321 (394)
Q Consensus 247 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~ 321 (394)
+++++++++.++.|.+||+.+++.+..+.. +...+..++|+|++.+++.++. ++.|.+||+.+............
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 999999999999999999999998877654 4556888999999997766655 59999999987654443332222
Q ss_pred EEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 322 VTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
..++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|++++|+.+..+
T Consensus 275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 -LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred -ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence 5689999999766555 68999999999999998887644 67899999999976665554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=207.57 Aligned_cols=253 Identities=13% Similarity=0.097 Sum_probs=195.5
Q ss_pred EEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEecC-CCCEEEEEEc
Q 016187 81 ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP-GGGVEWVSWH 158 (394)
Q Consensus 81 asg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~~ 158 (394)
.+++.|+++++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp --CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 45678999999999988866 4556899999999999999999887 78999999998 8776655555 3677889999
Q ss_pred CCCCEEEEec--CC--CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCCcEEEEcC--CCCceEEEEcC
Q 016187 159 PRGHIVLAGS--ED--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNP--KSGENIHVIRG 231 (394)
Q Consensus 159 ~~~~~l~~~s--~d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~--~~~~~~~~~~~ 231 (394)
|++++|++++ .+ ..|+.|+..+++ ...+..+. .+.+++|+|++++|+ +++.++.+++|++ .+++ ...+..
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 170 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH 170 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc
Confidence 9999999888 33 445555555554 33333333 488899999999887 7888999999985 3333 333332
Q ss_pred CCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC----------
Q 016187 232 HPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD---------- 299 (394)
Q Consensus 232 ~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~-~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d---------- 299 (394)
+...+.++.|+|+++.++.++ .++.+++|++. .+..+..+..|...+.+++|+|++.+|++++.+
T Consensus 171 ---~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 171 ---GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp ---SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred ---CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 445789999999999877665 58999999886 455667777888889999999999999888766
Q ss_pred -CcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 300 -QKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 300 -g~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+.|.+||+......... .|...+.++.|+|++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 56999999876543322 5677888999999999998887653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=204.77 Aligned_cols=264 Identities=9% Similarity=0.029 Sum_probs=206.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCC--CEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecc-c----C
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG-H----G 191 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~-h----~ 191 (394)
++|++++.++.|++||+.+++.+..+..... .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877764332 47789999999755 5666789999999998877665542 2 2
Q ss_pred cCeEEEEECCCCCeEEEEe------------CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 192 SSVTCGDFTPDGKTICTGS------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
..+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+..+.++|++++++++ ++.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE--SSS
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe--CCe
Confidence 2567889999999998886 579999999998887766653 2346678899999988887 689
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC------------------------cEEEEeCCCCCcce-
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ------------------------KLIIWDLQHSLPRS- 314 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg------------------------~i~iwd~~~~~~~~- 314 (394)
|.+||+.+++.+..+..+... ..+.|+|++.+++..+..+ .|.+||+.+.....
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 999999999888777654311 1237899988665544332 46899988765431
Q ss_pred -eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 315 -TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 315 -~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
...+...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++|++...
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 12345568889999999999988 799999999999988887754 45789999999999999999999999998764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=204.81 Aligned_cols=264 Identities=14% Similarity=0.203 Sum_probs=191.1
Q ss_pred EEEEEeCCCcEEEEeCC-CCce--EEEEecCCCCEEEEEEcCCCCEEEEecCC-CeEEEEeCC--ccc--eeeeecccCc
Q 016187 121 LLASGGLDGLVQIWDPS-SGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSED-STVWMWNAD--RAA--YLNMFSGHGS 192 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-~~i~iw~~~--~~~--~~~~~~~h~~ 192 (394)
.+++++.|+.|++|++. +++. ... ..+...+..++|+|++++|++++.+ +.+.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34455789999999985 3432 222 3456678889999999988887776 999999987 443 333444444
Q ss_pred CeEEEEECCCCCeEEEEeC-CCcEEEEcCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 016187 193 SVTCGDFTPDGKTICTGSD-DATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITT 267 (394)
Q Consensus 193 ~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~ 267 (394)
.+..++|+|++++|++++. ++.|++||+..+ +....+.. ...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG----LDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC----CCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 7788999999998876654 889999999433 33333332 23477889999999888777 899999999987
Q ss_pred -CcEEE----Eecc-CCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCC--CCcc--e-ec----c--CCCCEEEEEEeC
Q 016187 268 -GKVVS----SLVS-HTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQH--SLPR--S-TC----D--HEDGVTCLMWLG 329 (394)
Q Consensus 268 -~~~~~----~~~~-h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~--~~~~--~-~~----~--~~~~v~~~~~~~ 329 (394)
++... .+.. ....+..++|+|++.+++.+ ..++.+.+|++.. .... . .. . ....+..++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 65432 2222 34578899999999977555 4889999999853 2111 1 11 1 123567899999
Q ss_pred CCCEEEE-EeCCCeEEEEECC--C--CeEEEEeecccCceeEEEEccCCCEEEEEe-CCCcEEEEecc
Q 016187 330 TSKYVVT-GCVDGKVRVWDSL--S--GDCVRTFSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEIA 391 (394)
Q Consensus 330 ~~~~l~s-g~~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~~ 391 (394)
++++|++ +..++.|++|++. + .+.+..+..+.. +..++|+|++++|++++ .++.|++|+++
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9998875 4579999999987 3 345556665554 88999999999888877 68999999664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=204.63 Aligned_cols=252 Identities=15% Similarity=0.177 Sum_probs=196.4
Q ss_pred EEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeeccc-CcCeEEEEECC
Q 016187 124 SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGH-GSSVTCGDFTP 201 (394)
Q Consensus 124 t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h-~~~v~~~~~~~ 201 (394)
+++.|++|++||+.+++... +..+...+.+++|+|++++|++++ ++.|++|++.+ ++......++ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 44678999999999887664 445778899999999999998876 78999999998 7776666666 36788899999
Q ss_pred CCCeEEEEe--CCCcEEEE--cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCcEEEEe
Q 016187 202 DGKTICTGS--DDATLRVW--NPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNI--TTGKVVSSL 274 (394)
Q Consensus 202 ~~~~l~s~~--~dg~i~vw--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~g~~dg~i~i~d~--~~~~~~~~~ 274 (394)
++++|++++ .++..+|| +..+++ ...+.. ...+..+.|+|+++.++ +++.++.+++|++ .+++ ...+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~ 168 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRL 168 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS----SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEEC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec----CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEc
Confidence 999999998 33455555 445444 233332 23488899999999877 7888999999985 3444 4566
Q ss_pred ccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCC--CCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-----------
Q 016187 275 VSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQ--HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD----------- 340 (394)
Q Consensus 275 ~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----------- 340 (394)
..+...+.++.|+|++++++.++ .++.+++|++. .........+...+.++.|+|++++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 67888999999999999887766 58999999874 33333444566678899999999999988866
Q ss_pred CeEEEEECCCCeE--EEEeecccCceeEEEEccCCCEEEEEeCCC
Q 016187 341 GKVRVWDSLSGDC--VRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383 (394)
Q Consensus 341 g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 383 (394)
+.|++||+.+++. +..+.+|...+..++|+|++++|++++.+.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988865 445558888999999999999999887664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=236.65 Aligned_cols=281 Identities=10% Similarity=0.087 Sum_probs=209.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCC---CEEEEEEcCCCCEEEEecCC---------CeEEEE
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSED---------STVWMW 176 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~d---------~~i~iw 176 (394)
.+.+++|+|||+++++ +.|++|++||+.+++....+..+.. .+..++|+|++++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998876 7899999999999988777776654 48999999999999988764 788899
Q ss_pred eCCccce--eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc---------------ccCe
Q 016187 177 NADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH---------------TEGL 239 (394)
Q Consensus 177 ~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---------------~~~i 239 (394)
|+.+++. +....+|...+..++|+|||++|+.++. +.|++||+.+++.......+... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9988765 2222345555788999999999999886 79999999988766554432110 0123
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEEEEeccC------CC
Q 016187 240 TCLTISADSTLALSGSKDG----------------------------------SVHMVNITTGKVVSSLVSH------TD 279 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~~~~~~~h------~~ 279 (394)
.++.|+|||+.|++++.++ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887543 7999999988765556544 56
Q ss_pred CEEEEEECCCCCeEEEEeC----CCcEEEEeCCCCCcceec--cCCCCE----EEEEEeCCCCEEEE--EeCCC------
Q 016187 280 SIECIGFSRSSPWAATGSM----DQKLIIWDLQHSLPRSTC--DHEDGV----TCLMWLGTSKYVVT--GCVDG------ 341 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~--~~~~~v----~~~~~~~~~~~l~s--g~~dg------ 341 (394)
.+..++|+|+++++++.+. +..|.+||+.+....... .+...+ ..++|+|++++|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877643 357999999876544332 222323 37799999997775 45667
Q ss_pred eEEEEE-CCCCe--EEEEeecccCceeE-EEEccCCCEEEEEeCC---CcEEEEecc
Q 016187 342 KVRVWD-SLSGD--CVRTFSGHRDAIQA-ISVSAHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 342 ~i~iwd-~~~~~--~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
.|++|| ..+++ +...+..+...+.. ++|+||++.|+..+.+ +.+++|++.
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 577788 34444 15566644444544 6999999999866655 889999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=231.14 Aligned_cols=319 Identities=11% Similarity=0.076 Sum_probs=224.8
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCccc---CEEEEEEcCCCCEEEEEeC---------CCcEEEEeC
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGL---------DGLVQIWDP 136 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~l~t~s~---------d~~i~vwd~ 136 (394)
.++|+|++ .+++++ .|+++++|++.+++....+.+|.. .|.+++|||||++|+.++. ++.|++||+
T Consensus 20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 56899965 666654 699999999999988777776654 4899999999999998876 789999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee-cccCcCe-----------------EEEE
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSV-----------------TCGD 198 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~-~~h~~~v-----------------~~~~ 198 (394)
.+++.+.... ....+..++|+|+|+.|+.++ ++.|++|++.+++..+.. .++...+ .+++
T Consensus 98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 9887621011 124578899999999988875 789999999877654432 2332222 4789
Q ss_pred ECCCCCeEEEEeCCC----------------------------------cEEEEcCCCCceE--EEEcC---CCCcccCe
Q 016187 199 FTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENI--HVIRG---HPYHTEGL 239 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~~~--~~~~~---~~~~~~~i 239 (394)
|+|||++|++++.|. .|++||+.+++.. ..+.. ...+...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 999999999987652 7889999877642 11111 01244568
Q ss_pred EEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCcEEEEe----ccCCCCEE-----EEEECCCCCeEEE--EeCCC
Q 016187 240 TCLTISADSTLALSGSKD----GSVHMVN----ITTGKVVSSL----VSHTDSIE-----CIGFSRSSPWAAT--GSMDQ 300 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~d----g~i~i~d----~~~~~~~~~~----~~h~~~i~-----~v~~~~~~~~l~s--~s~dg 300 (394)
..++|+||++++++.... ..|.+|| +.+++....+ ..|...+. .+.|+|+++.++. ...+|
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 899999998877774432 2488899 7777654333 35666676 7899999996554 44555
Q ss_pred --cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCC--Ce-EEEEee----cccCceeE
Q 016187 301 --KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD-----GKVRVWDSLS--GD-CVRTFS----GHRDAIQA 366 (394)
Q Consensus 301 --~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~--~~-~~~~~~----~h~~~v~~ 366 (394)
.|.+||+..........+...+..+.++ +++.|+..+.+ +.+++|.+.. +. ....+. +|...+..
T Consensus 336 ~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 414 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT 414 (719)
T ss_dssp CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE
T ss_pred ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE
Confidence 4667787665544444455567777777 77777766654 7888887643 42 233443 36677889
Q ss_pred EEEccCCCEEEE-EeCC--CcEEEEeccC
Q 016187 367 ISVSAHQDFLVS-VSLD--GTARVFEIAD 392 (394)
Q Consensus 367 l~~~~~~~~l~s-~s~d--g~i~iw~~~~ 392 (394)
+.|+|++++++. ++.. ..+.+|++.+
T Consensus 415 ~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 415 ASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp EEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred EEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 999999987774 4443 4677887643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=197.02 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=200.3
Q ss_pred EEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcc-cCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEEec
Q 016187 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 70 ~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~~ 147 (394)
+++++ ++.++++++.+++|++||..+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45666 56788999999999999999999888776543 2578999999998665 555789999999999988776664
Q ss_pred CC------CCEEEEEEcCCCCEEEEecCC------------CeEEEEeCCccce---eeeecccCcCeEEEEECCCCCeE
Q 016187 148 PG------GGVEWVSWHPRGHIVLAGSED------------STVWMWNADRAAY---LNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 148 ~~------~~v~~~~~~~~~~~l~~~s~d------------~~i~iw~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.. ..+..++|+|+++++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 226779999999999888865 8999999987543 23333 334578899999999 5
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCCCCcc-----------------c----CeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHT-----------------E----GLTCLTISADSTLALSGSK-DGSVHMVN 264 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~----~i~~~~~~~~~~~l~~g~~-dg~i~i~d 264 (394)
+.++. .|.+||+.+++....+....... . ....+.+++++........ ...+..++
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 55543 49999999988776664321000 0 2234555554321100000 01122244
Q ss_pred CCCCcEE-EEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 265 ITTGKVV-SSLVSHTDSIECIGFSR-SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 265 ~~~~~~~-~~~~~h~~~i~~v~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
+.+++.. ..+..+...+..++++| ++.+++++ ++.|.+||+.+............+.+++|+|++++|++++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe
Confidence 4444321 11223556788999999 99999888 88999999987655444444455778999999999999988999
Q ss_pred EEEEECCCCeEEEEeecc
Q 016187 343 VRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 343 i~iwd~~~~~~~~~~~~h 360 (394)
|++||..+++.+..+...
T Consensus 318 v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 318 LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEETTTTEEEEEEECS
T ss_pred EEEEeccccceeeeeecC
Confidence 999999999999888754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=217.61 Aligned_cols=270 Identities=13% Similarity=0.068 Sum_probs=201.3
Q ss_pred CCcEEEEEEcCCCCcEEEEecC-CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC-
Q 016187 64 SDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS- 138 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~-d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~---d~~i~vwd~~~- 138 (394)
..+|++++|+|+ ++.||+++. |++++||++..++.......+...|.+++|||| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 558999999995 556777766 999999999777765544444468999999999 78887775 45566655432
Q ss_pred --CceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC---
Q 016187 139 --GNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD--- 212 (394)
Q Consensus 139 --~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--- 212 (394)
+... .+.. ...+...+|+|+++ .+++.+.++.+.+|++.+++..+....+. .+++|+|||++|++++.+
T Consensus 99 ~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 3222 3332 23455678899886 33444444555599998877655444333 688999999999988877
Q ss_pred -CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeccCCCCEEEEE----
Q 016187 213 -ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTDSIECIG---- 285 (394)
Q Consensus 213 -g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~v~---- 285 (394)
+.|++||+.+++.. .+.. +...+..++|+|||+.++++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 174 ~~~i~~~d~~~g~~~-~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEEEETTTCCCE-EECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CeEEEEEcCCCCCce-Eeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 78999999887754 4443 345578999999999999888888 8999999998877 7777777777777
Q ss_pred ----ECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe---EEEEECCC
Q 016187 286 ----FSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK---VRVWDSLS 350 (394)
Q Consensus 286 ----~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~---i~iwd~~~ 350 (394)
|+|++.++++++.++++++|++ ..... .....+.+++|+ +++++++++.+.. +++|+...
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 22211 334568899999 9999998887754 77777643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=195.35 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=197.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecc
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
.+++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+|+++.+ ++...++.|++||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788889999999999999999999998887776543 256789999999855 5666789999999998877665543
Q ss_pred c------CcCeEEEEECCCCCeEEEEeCC------------CcEEEEcCCCCce---EEEEcCCCCcccCeEEEEEcCCC
Q 016187 190 H------GSSVTCGDFTPDGKTICTGSDD------------ATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 190 h------~~~v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
+ ...+..++|+|+|++|++++.+ +.|.+||+.+++. +..... ...+.+++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg 159 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAADDG 159 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECTTS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC----CCcccceeECCCC
Confidence 2 2236788999999999988865 8999999987543 223222 2357788999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCC------------------------CEEEEEECCCCC-----------eE
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTD------------------------SIECIGFSRSSP-----------WA 293 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~------------------------~i~~v~~~~~~~-----------~l 293 (394)
+ +++++. .|.+||+.+++.+..+..+.. ....+++++++. ++
T Consensus 160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 555543 499999999988877654320 234566665432 12
Q ss_pred EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 294 ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG-TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
.....++++++|++. .+...+..++++| ++++++++ ++.|++||+.+++.++.+... ..+.+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 305 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFA--------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK 305 (349)
T ss_dssp EEETTTCCEEEEEEE--------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS
T ss_pred EEeccCCcEEecccc--------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCC
Confidence 233344555555542 1345678899999 99999988 899999999999998887743 35789999999
Q ss_pred CCEEEEEeCCCcEEEEeccCC
Q 016187 373 QDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 373 ~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+++|++++.++.|++|++.+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTT
T ss_pred CCEEEEecCCCeEEEEecccc
Confidence 999888888999999998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=217.23 Aligned_cols=266 Identities=13% Similarity=0.082 Sum_probs=197.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecC---CCeEEEE--eC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSE---DSTVWMW--NA 178 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~-d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~---d~~i~iw--~~ 178 (394)
+..+|++++|+|||++||.++. |++++||++.+++.. .+..+. ..+..++|+|+ +++++++. +....+| +.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 999999998666554 444444 57899999999 77777664 4545555 44
Q ss_pred --CccceeeeecccCcCeEEEEECCCCCe--EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE
Q 016187 179 --DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 179 --~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g 254 (394)
.... . .+.... .....+|+|+|+. +++++. +.+.+||+.+++........ . .++.++|||++++++
T Consensus 98 ~~~g~~-~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~----~--~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 98 SRPGEE-Q-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLP----G--FGFVSDIRGDLIAGL 167 (582)
T ss_dssp TSTTCC-E-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEES----S--CEEEEEEETTEEEEE
T ss_pred cCCCcc-c-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCC----C--ceEEECCCCCEEEEE
Confidence 3222 2 222221 2335578888753 444444 44559999888654443321 1 678999999999988
Q ss_pred eCC----CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCcceeccCCCCEEEEE--
Q 016187 255 SKD----GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ--KLIIWDLQHSLPRSTCDHEDGVTCLM-- 326 (394)
Q Consensus 255 ~~d----g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~-- 326 (394)
+.+ +.|++||+.+++.. .+..|...+..++|+|++++|++++.++ +|++||+.+........|...+..++
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPT 246 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCS
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhc
Confidence 777 78999999888754 6778888999999999999999888898 89999998776553344555555556
Q ss_pred ------EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCc---EEEEec
Q 016187 327 ------WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT---ARVFEI 390 (394)
Q Consensus 327 ------~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~---i~iw~~ 390 (394)
|+|++.++++++.+|.+++|++ ++++. ...+.|.+++|+ +++++++++.+.+ +.+|+.
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 9999999999999999999999 76654 334678999999 9999999887754 555554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=191.89 Aligned_cols=263 Identities=11% Similarity=0.155 Sum_probs=184.9
Q ss_pred CCcEEEEe--CCCCceEE-EEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccc--eeeeecccCcCeEEEEE
Q 016187 128 DGLVQIWD--PSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAA--YLNMFSGHGSSVTCGDF 199 (394)
Q Consensus 128 d~~i~vwd--~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~ 199 (394)
++.|.+|. ..+++... ....+...+.+++|+|+++ |++++. ++.|++|++.++. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 45566665 45565533 2233445677899999999 555443 6899999996554 34444557778889999
Q ss_pred CCCCCeEEEEe-CCCcEEEEcCCCCce---EEEEcCCC------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CC
Q 016187 200 TPDGKTICTGS-DDATLRVWNPKSGEN---IHVIRGHP------YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TG 268 (394)
Q Consensus 200 ~~~~~~l~s~~-~dg~i~vwd~~~~~~---~~~~~~~~------~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~ 268 (394)
+|+|++|++++ .++.|++|++..... +..+.... .....+.+++++|++++++++..++.|++|++. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999888887 789999999863222 22222110 012347889999999977777788999999998 55
Q ss_pred cEE--EEeccC-CCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCC--CCcc---eeccCC------CCEEEEEEeCCCCE
Q 016187 269 KVV--SSLVSH-TDSIECIGFSRSSPWAAT-GSMDQKLIIWDLQH--SLPR---STCDHE------DGVTCLMWLGTSKY 333 (394)
Q Consensus 269 ~~~--~~~~~h-~~~i~~v~~~~~~~~l~s-~s~dg~i~iwd~~~--~~~~---~~~~~~------~~v~~~~~~~~~~~ 333 (394)
+.. ..+..+ ...+..++|+|+++++++ ...++.+.+|++.. .... ...... ..+..++|+|++++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 222222 336788999999996655 56788999999864 2111 111111 34788999999998
Q ss_pred E-EEEeCCCeEEEEECC---CCeEEEEeecccCceeEEEEccCCCEEEEEeCC-CcEEEEecc
Q 016187 334 V-VTGCVDGKVRVWDSL---SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD-GTARVFEIA 391 (394)
Q Consensus 334 l-~sg~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g~i~iw~~~ 391 (394)
| ++...++.|.+|++. +.+.+..+..+...+..++|+||+++|++++.+ +.|.+|+++
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 7 455678999999986 235566677777778999999999988887754 899999654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-23 Score=188.59 Aligned_cols=271 Identities=15% Similarity=0.156 Sum_probs=186.8
Q ss_pred cCCCeEEEEEcC--CCeeeE-eecCcccCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCce--EEEEecCCCCEEEE
Q 016187 84 GGDDKGFFWRIN--QGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNL--KCTLEGPGGGVEWV 155 (394)
Q Consensus 84 ~~d~~v~~w~~~--~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~---d~~i~vwd~~~~~~--~~~~~~~~~~v~~~ 155 (394)
+.++.+.+|.+. ++++.. ....+...+..++|+|+|+ |++++. ++.|++|++.+++. +..+..+...+..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 345667777654 555443 3344567788899999999 555544 68999999977763 33444456678899
Q ss_pred EEcCCCCEEEEec-CCCeEEEEeCCc-c--ceeeeecc---------cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC-
Q 016187 156 SWHPRGHIVLAGS-EDSTVWMWNADR-A--AYLNMFSG---------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPK- 221 (394)
Q Consensus 156 ~~~~~~~~l~~~s-~d~~i~iw~~~~-~--~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~- 221 (394)
+|+|++++|++++ .++.+.+|++.. + ..+..+.. +...+.+++|+|+|+++++...++.|++|++.
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999999887777 789999999862 2 22222221 12347889999999966777778999999998
Q ss_pred CCceEEEEcCCCCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC--CcE--EEEeccCC------CCEEEEEECCCC
Q 016187 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITT--GKV--VSSLVSHT------DSIECIGFSRSS 290 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-g~~dg~i~i~d~~~--~~~--~~~~~~h~------~~i~~v~~~~~~ 290 (394)
+++.................++|+|+++++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|++
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 44322211111112235788999999995555 56788999999874 543 22332222 358899999999
Q ss_pred CeE-EEEeCCCcEEEEeCCCC-C--cc-eeccCCCCEEEEEEeCCCCEEEEEeCC-CeEEEE--ECCCCeEEE
Q 016187 291 PWA-ATGSMDQKLIIWDLQHS-L--PR-STCDHEDGVTCLMWLGTSKYVVTGCVD-GKVRVW--DSLSGDCVR 355 (394)
Q Consensus 291 ~~l-~s~s~dg~i~iwd~~~~-~--~~-~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~iw--d~~~~~~~~ 355 (394)
++| ++...++.|.+|++... . .. ....+...+..++|+|++++|++++.+ +.|.+| |..++++..
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 977 55667899999998632 1 11 112234557899999999998888765 899999 666776653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-23 Score=186.70 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=193.1
Q ss_pred cCCCeEEEEEc--CCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CceE--EEEecCCCCEE
Q 016187 84 GGDDKGFFWRI--NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSS--GNLK--CTLEGPGGGVE 153 (394)
Q Consensus 84 ~~d~~v~~w~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d----~~i~vwd~~~--~~~~--~~~~~~~~~v~ 153 (394)
+.++.+.+|.+ .++++......|...+..++|+|+|++|++++.+ +.|.+|++.. ++.. .....+.....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 45778888876 4455433222277788899999999999999886 7999998765 5432 33343455677
Q ss_pred EEEEcCCCCEEEEec-CCCeEEEEeCCccceeeee------cc--------cCcCeEEEEECCCCCeEEEEe-CCCcEEE
Q 016187 154 WVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMF------SG--------HGSSVTCGDFTPDGKTICTGS-DDATLRV 217 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~------~~--------h~~~v~~~~~~~~~~~l~s~~-~dg~i~v 217 (394)
.+++ ++++|++++ .++.+.+|++.....+..+ .+ +...+.+++|+|+|++|++++ .++.|++
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 7787 777665555 6889999998753322211 11 123357899999999765554 5889999
Q ss_pred EcCCCCce------E------EEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcE--EEEe---ccCCC
Q 016187 218 WNPKSGEN------I------HVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKV--VSSL---VSHTD 279 (394)
Q Consensus 218 wd~~~~~~------~------~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~--~~~~---~~h~~ 279 (394)
|++..... + ..... ........++|+|+++++++++ .++.|.+|++.+++. +..+ ..+..
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~ 259 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ 259 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred EEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence 98764431 1 11111 1234678999999999877766 689999999987754 2333 22335
Q ss_pred CEEEEEECCCCCeEEEEeCC--CcEEEEeCCC--CCcc--eeccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEE--ECCC
Q 016187 280 SIECIGFSRSSPWAATGSMD--QKLIIWDLQH--SLPR--STCDHEDGVTCLMWLGTSKYVVTGC-VDGKVRVW--DSLS 350 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~d--g~i~iwd~~~--~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iw--d~~~ 350 (394)
....++|+|++++|+++..+ ++|.+|++.. .... ........+..++|+|++++|++++ .++.|.+| |..+
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 57899999999998776654 8999999852 2211 1112234577899999999988887 67899996 5567
Q ss_pred CeEEEEe-ecccCceeEEEEc
Q 016187 351 GDCVRTF-SGHRDAIQAISVS 370 (394)
Q Consensus 351 ~~~~~~~-~~h~~~v~~l~~~ 370 (394)
+++.... ..+...+.+++|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7765433 2344567888885
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-23 Score=191.57 Aligned_cols=295 Identities=13% Similarity=0.084 Sum_probs=211.0
Q ss_pred EEEcCCCeeeEeecCcccCEEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 91 FWRINQGDWASEIQGHKDSVSS-----LAFSMDGQLLASGGL-DG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 91 ~w~~~~~~~~~~~~~h~~~V~~-----v~~s~~g~~l~t~s~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
.++..++..+..+..|...+.. .+|||||++|+.++. ++ .|.+||+.+++......++...+..+.|+|+++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 3566677777788888776666 889999999998887 66 488889998887665555555554678999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE--ECCCCCeEEEE----------------------eCCCcEEEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD--FTPDGKTICTG----------------------SDDATLRVW 218 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~----------------------~~dg~i~vw 218 (394)
.|+.++.++.+++|++.+++....+..+...+.... ++|++++++.. ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999999998877666665655444333 48999988743 244679999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeccCC--CCEEEEEECCC
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKD------GSVHMVNITTGKVVSSLVSHT--DSIECIGFSRS 289 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h~--~~i~~v~~~~~ 289 (394)
|+.+++...... +...+..+.|+| +++.++....+ ..|.++|+..++. ..+..+. ..+..+.|+|+
T Consensus 174 d~~~g~~~~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 174 DLKTGESTVILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp ETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTT
T ss_pred ECCCCceEEeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCC
Confidence 999886544332 234578899999 99988776653 3788888876543 3444444 35778899999
Q ss_pred CCeEEEEeCC-C----cEEEEeCCCCCcceeccCCCC------EEEEEEeCCCCEEEEE---------eCCCeEEEEECC
Q 016187 290 SPWAATGSMD-Q----KLIIWDLQHSLPRSTCDHEDG------VTCLMWLGTSKYVVTG---------CVDGKVRVWDSL 349 (394)
Q Consensus 290 ~~~l~s~s~d-g----~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~sg---------~~dg~i~iwd~~ 349 (394)
++.|+..+.. + .|.+||+.+............ .....|+|++++|+.. ..+..|++||+.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 9977654432 2 399999987654332221110 1112689999887754 456789999998
Q ss_pred CCeEEEEeecccC-----------ceeEEEEccCCCEEEEEe-CCCcEEEEecc
Q 016187 350 SGDCVRTFSGHRD-----------AIQAISVSAHQDFLVSVS-LDGTARVFEIA 391 (394)
Q Consensus 350 ~~~~~~~~~~h~~-----------~v~~l~~~~~~~~l~s~s-~dg~i~iw~~~ 391 (394)
+++. ..+..|.. .+..++|+||++.|+..+ .+|...||.+.
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 8765 45666665 578899999999888666 57888888654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=203.42 Aligned_cols=320 Identities=13% Similarity=0.117 Sum_probs=216.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccC-----EEEEEEcCCCCEEEEEeCC---------CcE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-----VSSLAFSMDGQLLASGGLD---------GLV 131 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~-----V~~v~~s~~g~~l~t~s~d---------~~i 131 (394)
..++++|+|+ +.+++++ |+++++|++.+++....+.+|... ...++|||||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 4567899995 5788876 899999999999988888887643 2347899999999998876 566
Q ss_pred EEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-ecccCcCe----------------
Q 016187 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSV---------------- 194 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h~~~v---------------- 194 (394)
.+||+.+++.. .+..+.+.+..++|+|+|+.|+.+ .++.|++|++.++...+. ..++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998754 355667789999999999988887 468999999987764432 22332222
Q ss_pred -EEEEECCCCCeEEEEeCCC------------------------------------cEEEEcCCC---Cc--eEEEEcCC
Q 016187 195 -TCGDFTPDGKTICTGSDDA------------------------------------TLRVWNPKS---GE--NIHVIRGH 232 (394)
Q Consensus 195 -~~~~~~~~~~~l~s~~~dg------------------------------------~i~vwd~~~---~~--~~~~~~~~ 232 (394)
..+.|||||++||.++.|. +|++||+.+ ++ ....+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3478999999999875332 478888887 63 22233211
Q ss_pred C---CcccCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc----EE--EEe--ccCCCCEE-----EEEECCCCCe
Q 016187 233 P---YHTEGLTCLTISADSTLALSGS----KDGSVHMVNITTGK----VV--SSL--VSHTDSIE-----CIGFSRSSPW 292 (394)
Q Consensus 233 ~---~~~~~i~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~~----~~--~~~--~~h~~~i~-----~v~~~~~~~~ 292 (394)
. .+...+..++|+||++.++... .+..|.+||+.+++ +. ..+ ..|...+. .+.|+|+++.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 0 1445688999999999666543 23479999998886 22 111 34555554 6889999998
Q ss_pred EE-EEeC-CC--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE-EEeC----CC--eEEEEECCCCeEEEEeec--
Q 016187 293 AA-TGSM-DQ--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV-TGCV----DG--KVRVWDSLSGDCVRTFSG-- 359 (394)
Q Consensus 293 l~-s~s~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~----dg--~i~iwd~~~~~~~~~~~~-- 359 (394)
++ ..+. +| .|.+||+..............+..+.+ ++++.|+ ++.. .+ .|+..++..++....++.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~ 411 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL 411 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc
Confidence 77 6653 33 588888877665554444455665543 3355554 4443 23 455555554443334542
Q ss_pred --ccCceeEEEEccCCCEEEEEeCC---CcEEEEecc
Q 016187 360 --HRDAIQAISVSAHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 360 --h~~~v~~l~~~~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
....+..+.|+|++++++..... ..+.+++..
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 24567899999999987644332 345555543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=212.69 Aligned_cols=271 Identities=11% Similarity=0.086 Sum_probs=198.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCC---CEEEEEEcCCCCEEEEecC---------CCeEEEEeCC
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSE---------DSTVWMWNAD 179 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~---------d~~i~iw~~~ 179 (394)
+++|+|+|+++++ +.|++|++||+.+++....+..+.. .+..++|+|+|++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 5699999999999987766654432 4889999999999988876 7899999998
Q ss_pred cccee--eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc-----------------CeE
Q 016187 180 RAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-----------------GLT 240 (394)
Q Consensus 180 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~i~ 240 (394)
+++.+ ..+ ...+..++|+|||+.|+.+. ++.|++||+.+++........ +.. ...
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~--~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG--RENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC--BTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC--CcCCeEcccccceeeeecccCcc
Confidence 88762 222 24577899999999999886 789999999887764322111 111 124
Q ss_pred EEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEE---E-----EeccCC
Q 016187 241 CLTISADSTLALSGSKDG----------------------------------SVHMVNITTGKVV---S-----SLVSHT 278 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~~---~-----~~~~h~ 278 (394)
+++|+|||+.|++++.|. .|++||+.+++.. . .+..|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 799999999999887552 7889999887642 1 123577
Q ss_pred CCEEEEEECCCCCeEEEEeCC----CcEEEEe----CCCCCcceec-----cCCCCEE-----EEEEeCCCCEEEE--Ee
Q 016187 279 DSIECIGFSRSSPWAATGSMD----QKLIIWD----LQHSLPRSTC-----DHEDGVT-----CLMWLGTSKYVVT--GC 338 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~~~~~~~l~s--g~ 338 (394)
..+..++|+|+++++++.... ..|.+|| +.+....... .|...+. .+.|+|+++.++. ..
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 889999999998877774432 2488899 6654333332 4555555 7889999996554 44
Q ss_pred CCC--eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC-----CcEEEEecc
Q 016187 339 VDG--KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD-----GTARVFEIA 391 (394)
Q Consensus 339 ~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iw~~~ 391 (394)
.+| .|++|++.+++ ...+..+...|..+.+. +++.|+..+.+ +.+++|.+.
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 555 57778887766 55677777778888887 88877766654 889999865
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=194.70 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=154.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-----------eeeE----eecCcccCEEEEEEcCCCCEEE----EE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------DWAS----EIQGHKDSVSSLAFSMDGQLLA----SG 125 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-----------~~~~----~~~~h~~~V~~v~~s~~g~~l~----t~ 125 (394)
..++.++++|.. .++++|+.|+ +++|+.... .... ....|...|++++|+|+|++|+ +|
T Consensus 37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 357888999964 5677777777 888874311 1110 0123567899999999999999 78
Q ss_pred eCCCcEEEEeCCCC--------ce---EEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeecccCcC
Q 016187 126 GLDGLVQIWDPSSG--------NL---KCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193 (394)
Q Consensus 126 s~d~~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~ 193 (394)
+.|++|+|||+.++ +. ...+.+|...|.+++|+|+ +++|++++.|++|++||++++.......+|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998654 22 3345568889999999998 789999999999999999988766666788999
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC----cccCeEEEEEcCCCCEEEE-EeCCC------cEEE
Q 016187 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY----HTEGLTCLTISADSTLALS-GSKDG------SVHM 262 (394)
Q Consensus 194 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~-g~~dg------~i~i 262 (394)
|.+++|+|+|++|++|+.||+|++||++ ++....+..+.. |...+.++.|++++.++++ +..+| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 555555544322 2236899999998877755 33443 3899
Q ss_pred EECCCC
Q 016187 263 VNITTG 268 (394)
Q Consensus 263 ~d~~~~ 268 (394)
|++++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-21 Score=176.76 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=185.6
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC----CeEEEEeCCc--cc--ee
Q 016187 119 GQLLASGG----LDGLVQIWDP--SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADR--AA--YL 184 (394)
Q Consensus 119 g~~l~t~s----~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----~~i~iw~~~~--~~--~~ 184 (394)
..+++.|+ .++.|.+|.+ .+++.......+...+..++|+|++++|++++.+ +.+.+|++.. ++ .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 3567888865 5665543222255667789999999999888875 7999998754 33 23
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEEEE------cCC-----CCcccCeEEEEEcCCCCEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVI------RGH-----PYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~------~~~-----~~~~~~i~~~~~~~~~~~l~ 252 (394)
.....+...+..+++ ++++|++++ .++.|.+|++.....+..+ .+. ..+...+.+++++|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 334445556677777 788777665 6889999998754322111 110 01123467899999999665
Q ss_pred EE-eCCCcEEEEECCCCc-------E------EEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCccee--
Q 016187 253 SG-SKDGSVHMVNITTGK-------V------VSSLVSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRST-- 315 (394)
Q Consensus 253 ~g-~~dg~i~i~d~~~~~-------~------~~~~~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-- 315 (394)
++ ..++.|++|++.... + ......+...+..++|+|+++++++++ .+++|.+|++........
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 54 458899999886433 1 111233455678999999999887776 689999999875422111
Q ss_pred ----ccCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECC--CCe--EEEEeecccCceeEEEEccCCCEEEEEe-CCCc
Q 016187 316 ----CDHEDGVTCLMWLGTSKYVVTGCVD--GKVRVWDSL--SGD--CVRTFSGHRDAIQAISVSAHQDFLVSVS-LDGT 384 (394)
Q Consensus 316 ----~~~~~~v~~~~~~~~~~~l~sg~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~ 384 (394)
..+......++|+|++++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|++++|++++ .++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 1233457899999999998776654 899999985 455 4445555 56688999999999888887 6799
Q ss_pred EEEEecc
Q 016187 385 ARVFEIA 391 (394)
Q Consensus 385 i~iw~~~ 391 (394)
|.+|+++
T Consensus 330 v~v~~~d 336 (361)
T 3scy_A 330 IQIFERD 336 (361)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-22 Score=196.27 Aligned_cols=298 Identities=14% Similarity=0.072 Sum_probs=206.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEe--cCCCeEEEEEcCCCeeeEeecCcccCEE---------EEEEc--CCCCE-EE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVS---------SLAFS--MDGQL-LA 123 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg--~~d~~v~~w~~~~~~~~~~~~~h~~~V~---------~v~~s--~~g~~-l~ 123 (394)
..+.+|...+..++++|+ ..++++. +.+++..||....+.....+..|...+. ...|+ |||++ |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 456789999999999984 5566776 6688999999655555666777776666 66666 99998 76
Q ss_pred EEeC-CCcEEEEeCC--C-CceEEEEec-----CCCCEEEEEEcCCCCEEEEecCC----------CeEEEEeCCc----
Q 016187 124 SGGL-DGLVQIWDPS--S-GNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED----------STVWMWNADR---- 180 (394)
Q Consensus 124 t~s~-d~~i~vwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~s~d----------~~i~iw~~~~---- 180 (394)
.++. +..|.+|++. . ++ ...+.. +...+..++|+|+|+.|++++.+ ..|++|++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 5543 5667777765 3 43 334444 45568899999999999988876 5899999987
Q ss_pred --cceeeeec-ccCcCeEEEEECCCCCeEEEEeCCC--------cEEEEcCC-CCc--eEEEEcCCCCcccCeEEEEEcC
Q 016187 181 --AAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDA--------TLRVWNPK-SGE--NIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 181 --~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg--------~i~vwd~~-~~~--~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
+.. ..+. .+...+..++|+|||++|+.++.++ .|++||+. +++ ....+.. .+...+..+.|+|
T Consensus 175 ~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--~~~~~~~~~~~sp 251 (662)
T 3azo_A 175 DRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--GPEEAIAQAEWAP 251 (662)
T ss_dssp CGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--ETTBCEEEEEECT
T ss_pred cCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC--CCCceEcceEECC
Confidence 554 3444 4556777889999999999877553 79999998 561 2333322 1245688999999
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCcEEEEeccCCCC--------EEEEEECCCCCeEEEEeCCCcEEEE--eCCCCCcce
Q 016187 247 DSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTDS--------IECIGFSRSSPWAATGSMDQKLIIW--DLQHSLPRS 314 (394)
Q Consensus 247 ~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~--------i~~v~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~ 314 (394)
+|++++++..++ .|.+||+.+++.......+... +..++|+|++.++++++. +.++|| |+.......
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD 330 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE
Confidence 999888888888 6677777677654333322222 567899999999999998 999999 555444444
Q ss_pred eccCCCCEEEE-EEeCCCCEEEEEeCCC--eEEEEECCCCeEEEEeeccc
Q 016187 315 TCDHEDGVTCL-MWLGTSKYVVTGCVDG--KVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 315 ~~~~~~~v~~~-~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~ 361 (394)
...+...+..+ .+.++.-++++++.+. .|++||+.+++.......|.
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCC
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCc
Confidence 44555566666 4444433444555554 46666777777554334443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=190.20 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=162.3
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc----------eee-----eecccCcC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----------YLN-----MFSGHGSS 193 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~----------~~~-----~~~~h~~~ 193 (394)
+.+++|+.. .. .+...++.+++++++.++++++.++ +++|+..... .+. ....+...
T Consensus 23 ~~vri~~~~-~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSP-EE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCC-SS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCc-cc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 468887643 11 1334578899999999999998887 8888753211 000 11134567
Q ss_pred eEEEEECCCCCeEE----EEeCCCcEEEEcCCCC--------ceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcE
Q 016187 194 VTCGDFTPDGKTIC----TGSDDATLRVWNPKSG--------ENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSV 260 (394)
Q Consensus 194 v~~~~~~~~~~~l~----s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i 260 (394)
|.+++|+|+|++|+ +|+.|++|++||+.++ +.+..+.....|...|++++|+|+ +.++++++.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 8899999999998654 222333333346788999999998 8899999999999
Q ss_pred EEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-------cCCCCEEEEEEeCCCCE
Q 016187 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-------DHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 333 (394)
++||++++..+.....|...|.+++|+|++.+|++|+.||+|++||++........ .|...+.++.|++++.+
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99999998777777778999999999999999999999999999999832211111 12337899999998888
Q ss_pred EEEE-eCCC------eEEEEECCCC
Q 016187 334 VVTG-CVDG------KVRVWDSLSG 351 (394)
Q Consensus 334 l~sg-~~dg------~i~iwd~~~~ 351 (394)
+++. +.+| .+++|+++..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEccCCCccCCCCceEEEEeccC
Confidence 7654 3443 3899998764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=183.84 Aligned_cols=287 Identities=11% Similarity=0.060 Sum_probs=199.3
Q ss_pred eeeeeccCCcEEE-----EEEcCCCCcEEEEecC-CC--eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 57 THIFSGHSDEVYS-----VACSPTDATLVATGGG-DD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 57 ~~~~~~h~~~v~~-----~~~~p~~~~~lasg~~-d~--~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
...+..|...+.. .+|+|++. .||.++. ++ .+++|++.+++......+|...+..+.|||||++|+.++.+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred eEEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 4456666666666 78999655 4555554 66 48888999998888777787777678899999999999999
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEE--EcCCCCEEEE----------------------ecCCCeEEEEeCCcccee
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVS--WHPRGHIVLA----------------------GSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~----------------------~s~d~~i~iw~~~~~~~~ 184 (394)
+.|++||+.+++.......+...+.... ++|++.+++. ...+..|++||+.+++..
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 9999999999987766666665554444 4889988764 234578999999887654
Q ss_pred eeecccCcCeEEEEECC-CCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-
Q 016187 185 NMFSGHGSSVTCGDFTP-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK- 256 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~- 256 (394)
. +..+...+..++|+| +|+.|+.++.+ ..|.++|+..++. ..+.... ....+....|+|+|+.|+..+.
T Consensus 182 ~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~-~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 182 V-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA-EGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC-TTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC-CCcccccceECCCCCEEEEEecC
Confidence 3 445666788999999 99998877653 3788888765543 3333211 1124677899999997655332
Q ss_pred CC----cEEEEECCCCcE--EEEeccCCCC---EEEEEECCCCCeEEEE---------eCCCcEEEEeCCCCCcceeccC
Q 016187 257 DG----SVHMVNITTGKV--VSSLVSHTDS---IECIGFSRSSPWAATG---------SMDQKLIIWDLQHSLPRSTCDH 318 (394)
Q Consensus 257 dg----~i~i~d~~~~~~--~~~~~~h~~~---i~~v~~~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~ 318 (394)
++ .|++||+.+++. +..+..+... ...+.|+|++++|+.. ..+..|.+||+..........+
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 22 399999998874 3333321000 1123689999887754 4566899999987655544445
Q ss_pred CC-----------CEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 016187 319 ED-----------GVTCLMWLGTSKYVVTGC-VDGKVRVWD 347 (394)
Q Consensus 319 ~~-----------~v~~~~~~~~~~~l~sg~-~dg~i~iwd 347 (394)
.. .+.+++|+|++++|+..+ .+|...||.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 44 467889999999888665 466666664
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=186.28 Aligned_cols=293 Identities=11% Similarity=-0.000 Sum_probs=201.8
Q ss_pred EEEcCCCeeeEeecCcccC-----EEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 91 FWRINQGDWASEIQGHKDS-----VSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 91 ~w~~~~~~~~~~~~~h~~~-----V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
+.|..+++.+..+..+... +..++|||||++|+.++.. ..|.+||+.+++..............+.|+|+++
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4466777666666655433 7788999999998776543 4688899988875433232222222378999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEE-------------------EEECCCCCeEEEE-----eCCCcEEEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC-------------------GDFTPDGKTICTG-----SDDATLRVW 218 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~l~s~-----~~dg~i~vw 218 (394)
.|+.++.++.+++|++.+++.......+...... ..|+|+++.++.+ ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 9999999999999999887765555444332222 3467888776654 356789999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeccC--CCCEEEEEECCC
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKD------GSVHMVNITTGKVVSSLVSH--TDSIECIGFSRS 289 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h--~~~i~~v~~~~~ 289 (394)
|+.+++...... +...+..+.|+| ++..++..+.+ ..|.+|++..++.. .+..+ ...+..++|+|+
T Consensus 174 d~~~g~~~~~~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 174 DIETGELEVIHQ----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp ETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTT
T ss_pred ECCCCcEEeecc----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCC
Confidence 998877554432 344678899999 78766665543 46889998766533 33333 235788999999
Q ss_pred CCeEEEEeCC-----CcEEEEeCCCCCcceeccCCCCEEEEEEeC-CCCEEEEEe----------------CCCeEEEEE
Q 016187 290 SPWAATGSMD-----QKLIIWDLQHSLPRSTCDHEDGVTCLMWLG-TSKYVVTGC----------------VDGKVRVWD 347 (394)
Q Consensus 290 ~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~----------------~dg~i~iwd 347 (394)
+++|+.++.+ +.|.+||+.+.......... ... +.|+| +++++++++ .++.|++||
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 9988777544 44999999766543332222 233 88999 999888765 347899999
Q ss_pred CCCCeEEEEeecccC-----------ceeEEEEccCCCEEEEEeC-CCcEEEEecc
Q 016187 348 SLSGDCVRTFSGHRD-----------AIQAISVSAHQDFLVSVSL-DGTARVFEIA 391 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~l~s~s~-dg~i~iw~~~ 391 (394)
+.+++.. .+..+.. .+..++|+|+++.|+.++. ++...+|.+.
T Consensus 327 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 327 TKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 9887753 4555554 2567899999998887764 5777777653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-20 Score=172.52 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=205.8
Q ss_pred CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEEecC------
Q 016187 85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGP------ 148 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd~~~~~~~~~~~~~------ 148 (394)
.|+++++||..+++.+..+..+..+ .++|+|||++|+++. .+++|.+||..+++...++...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988888877666 899999999999886 3678999999998888777533
Q ss_pred CCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeee-ecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCC-C
Q 016187 149 GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKS-G 223 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~-~ 223 (394)
......++++|++++|+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+... +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 234567899999999988763 68999999999887776 54322 2235577765 6778889999999998865 4
Q ss_pred ceEEEEc---CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEecc------CC----CCEEEEEECC
Q 016187 224 ENIHVIR---GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--VVSSLVS------HT----DSIECIGFSR 288 (394)
Q Consensus 224 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~------h~----~~i~~v~~~~ 288 (394)
+...... .......+ ..+..++++..++..+.++.+.++|+.... .+..+.. +. .....++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 4332211 00011111 122335667777777788999999987553 2222211 00 1111268999
Q ss_pred CCCeEEEEeC-----------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eEEE
Q 016187 289 SSPWAATGSM-----------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG--DCVR 355 (394)
Q Consensus 289 ~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~ 355 (394)
++..++.+.. .++|.+||+.+.+......-.. +.+++|+|++++|++++. +.|.+||..++ +.++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR 341 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE
Confidence 9887766543 3589999998876554443333 889999999999999887 99999999999 9999
Q ss_pred EeecccCceeEEEEccCCC
Q 016187 356 TFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~ 374 (394)
++..+...-..++++|+|.
T Consensus 342 ~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 342 TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTSCSSEEEEEECCCSC
T ss_pred EeccCCCCcEEEEecCCCC
Confidence 9877777778999999885
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-21 Score=174.20 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=184.8
Q ss_pred EEEEEeCC--CcEEEEe--CCCCceEEE--Ee-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC-ccceeeeec--cc
Q 016187 121 LLASGGLD--GLVQIWD--PSSGNLKCT--LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFS--GH 190 (394)
Q Consensus 121 ~l~t~s~d--~~i~vwd--~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~-~~~~~~~~~--~h 190 (394)
+|+.|+.. +.|.+|+ ..++++... .. .....+..++|+|++++|++++.+ .+.+|++. +++...... .+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 4577665 456654322 11 233467789999999999888887 99999986 555443222 11
Q ss_pred CcCeEEEEECCCCCe--EEEEe-------------CCCcEEEEcCC-CCceEEEEcCCC-CcccCeEEEEEcCCCCEEEE
Q 016187 191 GSSVTCGDFTPDGKT--ICTGS-------------DDATLRVWNPK-SGENIHVIRGHP-YHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~--l~s~~-------------~dg~i~vwd~~-~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~ 253 (394)
. .+.+++|+|+|++ ++++. .++++++|++. .++....+.... .+...+.+++++|+|+++++
T Consensus 83 g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 83 G-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp S-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred C-CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 2 3456789999994 55553 68999999987 455433332110 12346889999999998877
Q ss_pred Ee-CCCcEEEEECC-CCcEE--EEec--cCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCC--CCCcc------eec--
Q 016187 254 GS-KDGSVHMVNIT-TGKVV--SSLV--SHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQ--HSLPR------STC-- 316 (394)
Q Consensus 254 g~-~dg~i~i~d~~-~~~~~--~~~~--~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~------~~~-- 316 (394)
+. .++.|++|++. +++.. ..+. .|...+..++|+|+++++++++. ++++.+|++. +.... ...
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 65 46899999998 67643 3333 24567899999999999887765 7899999764 22211 111
Q ss_pred ---cCCC------CEEEEE-EeCCCCEEEEEeCCC------eEEEEECC-CCeEEE---EeecccCceeEEEEcc---CC
Q 016187 317 ---DHED------GVTCLM-WLGTSKYVVTGCVDG------KVRVWDSL-SGDCVR---TFSGHRDAIQAISVSA---HQ 373 (394)
Q Consensus 317 ---~~~~------~v~~~~-~~~~~~~l~sg~~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~~~---~~ 373 (394)
++.. .+..++ |+|++++|+++..+. .|.+|++. +++... ....+...+..++|+| |+
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1121 478899 999999988776432 89999985 666543 2334555677899999 89
Q ss_pred CEEEEEeCC-CcEEEEecc
Q 016187 374 DFLVSVSLD-GTARVFEIA 391 (394)
Q Consensus 374 ~~l~s~s~d-g~i~iw~~~ 391 (394)
++|++++.+ ++|++|+++
T Consensus 322 ~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TEEEEECSSSCEEEEEEEE
T ss_pred CEEEEEEcCCCeEEEEEEc
Confidence 999998865 999999875
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=173.03 Aligned_cols=263 Identities=9% Similarity=0.032 Sum_probs=180.8
Q ss_pred CeEEEEEc--CCCeeeEe--ec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceEEEEec-CCCCEEEEEEcC
Q 016187 87 DKGFFWRI--NQGDWASE--IQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEG-PGGGVEWVSWHP 159 (394)
Q Consensus 87 ~~v~~w~~--~~~~~~~~--~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~ 159 (394)
+.|.+|++ .++++... .. +....+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+..++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 46776664 45554321 11 234468899999999999999888 99999987 7766433221 112355688999
Q ss_pred CCCE--EEEec-------------CCCeEEEEeCC-ccceeeeec----ccCcCeEEEEECCCCCeEEEEeC-CCcEEEE
Q 016187 160 RGHI--VLAGS-------------EDSTVWMWNAD-RAAYLNMFS----GHGSSVTCGDFTPDGKTICTGSD-DATLRVW 218 (394)
Q Consensus 160 ~~~~--l~~~s-------------~d~~i~iw~~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vw 218 (394)
+++. ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|+++.. ++.|++|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 9994 45554 68999999986 354433332 24567889999999998887654 6799999
Q ss_pred cCC-CCceEE--EEcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCcEE---EEec---c----CCC---
Q 016187 219 NPK-SGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT--TGKVV---SSLV---S----HTD--- 279 (394)
Q Consensus 219 d~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~--~~~~~---~~~~---~----h~~--- 279 (394)
|+. +++... .+.. +.+...+..++|+|+++++++++. ++.|.+|++. +++.. ..+. . |..
T Consensus 173 ~~~~~g~~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 173 RKLASGEVELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp EECTTSCEEEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred EECCCCCEEEeeeEec-CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 998 665422 2221 112456889999999998887764 7899999765 56542 1221 1 122
Q ss_pred ---CEEEEE-ECCCCCeEEEEeCCC------cEEEEeCC-CCCcce---ec-cCCCCEEEEEEeC---CCCEEEEEeCC-
Q 016187 280 ---SIECIG-FSRSSPWAATGSMDQ------KLIIWDLQ-HSLPRS---TC-DHEDGVTCLMWLG---TSKYVVTGCVD- 340 (394)
Q Consensus 280 ---~i~~v~-~~~~~~~l~s~s~dg------~i~iwd~~-~~~~~~---~~-~~~~~v~~~~~~~---~~~~l~sg~~d- 340 (394)
.+..++ |+|++++|++++.+. +|.+|++. ...... .. .+...+..++|+| ++++|++++.+
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~ 331 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence 588999 999999887766432 89999985 333222 11 2334456788999 89999998865
Q ss_pred CeEEEEECCCC
Q 016187 341 GKVRVWDSLSG 351 (394)
Q Consensus 341 g~i~iwd~~~~ 351 (394)
+.|++|++...
T Consensus 332 ~~v~v~~~~~~ 342 (365)
T 1jof_A 332 GWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEEETT
T ss_pred CeEEEEEEchh
Confidence 89999987655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=176.88 Aligned_cols=281 Identities=11% Similarity=0.040 Sum_probs=187.5
Q ss_pred EEEEEEcCCCCcEEEEecC--CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 67 VYSVACSPTDATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~--d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
+..++|+|++..++.+... +..+++|++.+++......++......+.|+|||++|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5667899976554444433 34788889988876555444433334478999999999999999999999998876655
Q ss_pred EecCCCCEEE-------------------EEEcCCCCEEEEe-----cCCCeEEEEeCCccceeeeecccCcCeEEEEEC
Q 016187 145 LEGPGGGVEW-------------------VSWHPRGHIVLAG-----SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 145 ~~~~~~~v~~-------------------~~~~~~~~~l~~~-----s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~ 200 (394)
...+.+.... +.|+|+++.++.+ ..+..|++|++.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 5544432222 2456666655443 35678999999887654443 466778899999
Q ss_pred C-CCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 016187 201 P-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTG 268 (394)
Q Consensus 201 ~-~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 268 (394)
| +++.|+..+.+ ..|.+||+..++. ..+... .....+..+.|+|+++.++..+.+ +.|++||+.++
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC-CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc-CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 9 78877766543 3688888865543 222221 012247788999999977766543 44999999888
Q ss_pred cEEEEeccCCCCEEEEEECC-CCCeEEEEe----------------CCCcEEEEeCCCCCcceeccCCC-----------
Q 016187 269 KVVSSLVSHTDSIECIGFSR-SSPWAATGS----------------MDQKLIIWDLQHSLPRSTCDHED----------- 320 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~----------- 320 (394)
+...... .. ... +.|+| +++++++++ .+..|.+||+..........+..
T Consensus 275 ~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 275 ENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQI 351 (396)
T ss_dssp CEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSST
T ss_pred CeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccC
Confidence 6543221 11 233 88999 999888765 34789999997765544444443
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCe--EEEEECCCCeE
Q 016187 321 GVTCLMWLGTSKYVVTGCV-DGK--VRVWDSLSGDC 353 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~-dg~--i~iwd~~~~~~ 353 (394)
.+..+.|+|++++|+.++. ++. |+..++.+++.
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 2456789999998887764 454 44445555544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-20 Score=169.10 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=191.9
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEeCCcc
Q 016187 118 DGQLLASGG------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRA 181 (394)
Q Consensus 118 ~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d~~i~iw~~~~~ 181 (394)
+++++++.. .|+.|.+||..+++.+..+.....+ .++|+|++++++++. .++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556665543 3679999999999988877765444 899999999888875 3678999999888
Q ss_pred ceeeeeccc------CcCeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCCC-CEE
Q 016187 182 AYLNMFSGH------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADS-TLA 251 (394)
Q Consensus 182 ~~~~~~~~h------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l 251 (394)
+.+..+... ......++|+|+|++|+++.. +++|.+||+.+++.+.. +.. .....+.+.|++ ..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-----~~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-----AGCWSVIPQPNRPRSF 166 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-----TTEEEEEECTTSSSEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-----CCcceeEEcCCCCeeE
Confidence 777666432 234567899999999988864 68999999999887665 432 122234567765 677
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEe------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--------
Q 016187 252 LSGSKDGSVHMVNITT-GKVVSSL------VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-------- 316 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~-~~~~~~~------~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------- 316 (394)
++.+.||++.+|++.. ++..... ..+..++ .+.+++++..++..+.++++.++|+.........
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 8888999999999865 5554221 1122222 2234566667777788999999998643221100
Q ss_pred -cC----CCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEe
Q 016187 317 -DH----EDGVTCLMWLGTSKYVVTGCV-----------DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 317 -~~----~~~v~~~~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
.+ ......++++|++++++++.. .+.|.+||+.+++.++++..+. ..+++|+||+++|++++
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 00 011112688999888777643 3489999999999999999877 89999999999999888
Q ss_pred CCCcEEEEeccCC
Q 016187 381 LDGTARVFEIADF 393 (394)
Q Consensus 381 ~dg~i~iw~~~~~ 393 (394)
. ++|.+||.++.
T Consensus 324 ~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 324 G-GNVNVYDISQP 335 (361)
T ss_dssp S-SCEEEEECSSS
T ss_pred C-CeEEEEECCCC
Confidence 7 99999998765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=188.28 Aligned_cols=276 Identities=12% Similarity=0.100 Sum_probs=191.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-----EEEEEEcCCCCEEEEecCC---------CeEE
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-----VEWVSWHPRGHIVLAGSED---------STVW 174 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~s~d---------~~i~ 174 (394)
...+++|+|||++++++ |++|++||+.+++....+.++... ...++|+|++++|+.++.+ +.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999999886 999999999999887777766532 2447899999999988876 5677
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-CCCCc--------------ccCe
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-GHPYH--------------TEGL 239 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~--------------~~~i 239 (394)
+||+.+++... +..|...+...+|||||+.||.+. ++.|++|++.+++...... +.... -...
T Consensus 96 ~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999887543 566777899999999999999885 6899999998876543211 11000 0112
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--EEEEec---
Q 016187 240 TCLTISADSTLALSGSKDG------------------------------------SVHMVNITT---GK--VVSSLV--- 275 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~dg------------------------------------~i~i~d~~~---~~--~~~~~~--- 275 (394)
..+.|||||+.|+.++.|. +|++||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3478999999988875321 588899988 72 223343
Q ss_pred ---cCCCCEEEEEECCCCCeEEEEeC----CCcEEEEeCCCCC-------ccee--ccCCCCEE-----EEEEeCCCCEE
Q 016187 276 ---SHTDSIECIGFSRSSPWAATGSM----DQKLIIWDLQHSL-------PRST--CDHEDGVT-----CLMWLGTSKYV 334 (394)
Q Consensus 276 ---~h~~~i~~v~~~~~~~~l~s~s~----dg~i~iwd~~~~~-------~~~~--~~~~~~v~-----~~~~~~~~~~l 334 (394)
.|...+..++|+|++++++.... +..|.+||+.+.. .... ..+...+. ...|+|+++.+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 37778999999999997665432 3379999987655 1211 22443333 67899999987
Q ss_pred E-EEeC-C--CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEE-EEeC----CCcEEEEec
Q 016187 335 V-TGCV-D--GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV-SVSL----DGTARVFEI 390 (394)
Q Consensus 335 ~-sg~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~----dg~i~iw~~ 390 (394)
+ ..+. + ..|++||+.+++.. .++.....|..+.. +|++.|+ ++.. .+...||.+
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 7 6653 3 46888998776554 45544555665542 4455544 4443 244566654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=185.58 Aligned_cols=282 Identities=13% Similarity=0.087 Sum_probs=199.6
Q ss_pred eecCcccCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceEEEEecCCCCEE---------EEEEc--CCCCE-EEEe
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASG--GLDGLVQIWDPSSGNLKCTLEGPGGGVE---------WVSWH--PRGHI-VLAG 167 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~--s~d~~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~ 167 (394)
.+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |+++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 467799999999999887777777 5688899998544444555655555554 45565 99987 6655
Q ss_pred c-CCCeEEEEeCC--c-cceeeeecc-----cCcCeEEEEECCCCCeEEEEeCC----------CcEEEEcCCC------
Q 016187 168 S-EDSTVWMWNAD--R-AAYLNMFSG-----HGSSVTCGDFTPDGKTICTGSDD----------ATLRVWNPKS------ 222 (394)
Q Consensus 168 s-~d~~i~iw~~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d----------g~i~vwd~~~------ 222 (394)
+ .+..|+++++. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 4 36778888876 3 33 333444 66778899999999999998877 5899999987
Q ss_pred CceEEEEc-CCCCcccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---cEEEEeccCCCCEEEEEECCC
Q 016187 223 GENIHVIR-GHPYHTEGLTCLTISADSTLALSGSKD--------GSVHMVNIT-TG---KVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 223 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~g~~d--------g~i~i~d~~-~~---~~~~~~~~h~~~i~~v~~~~~ 289 (394)
++. ..+. . +...+..++|+|||+.|+.++.+ ..|++||+. ++ +.......|...+..+.|+|+
T Consensus 177 ~~~-~~l~~~---~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 177 SAV-RELSDD---AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp GGS-EESSCS---CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred Cce-eEEEec---CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 443 3333 2 22346678899999999877754 379999998 56 333333445788999999999
Q ss_pred CCeEEEEeCCC--cEEEEeCCCCCcceeccCCCC---------EEEEEEeCCCCEEEEEeCCCeEEEE--ECCCCeEEEE
Q 016187 290 SPWAATGSMDQ--KLIIWDLQHSLPRSTCDHEDG---------VTCLMWLGTSKYVVTGCVDGKVRVW--DSLSGDCVRT 356 (394)
Q Consensus 290 ~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~sg~~dg~i~iw--d~~~~~~~~~ 356 (394)
++++++++.++ .|.+||+..........+... +..++|+++++++++++. +.++|| |..+++ ++.
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD 330 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence 99888888888 566666644433332222111 456888999999999998 999999 655555 678
Q ss_pred eecccCceeEE-EEccCCCEEEEEeCCCcEEEEec
Q 016187 357 FSGHRDAIQAI-SVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 357 ~~~h~~~v~~l-~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+..|...+..+ ++..+.-++++++.+....+|.+
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 88888888877 55444445556666766666644
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-19 Score=160.20 Aligned_cols=242 Identities=14% Similarity=0.128 Sum_probs=188.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCC------------------------CeEEEEEcCCCeeeEeec-CcccCEEEEEEcCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGD------------------------DKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMD 118 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d------------------------~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~ 118 (394)
-+.+.+|+++|+ ++++++...+ +++.+||..+++....+. ++......++++|+
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 357999999996 5677777776 479999998888876654 45568999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc-eEEEEe---------cCCCCEEEEEEcC-CCCEEEEec-CCCeEEEEeCCccceeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGN-LKCTLE---------GPGGGVEWVSWHP-RGHIVLAGS-EDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~s-~d~~i~iw~~~~~~~~~~ 186 (394)
|+++++...++.|++|+..... .+..+. .+......++++| ++.++++.+ .++.|++|+. .+..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 9999988889999999976442 444442 2334688999999 788888886 6899999994 4555555
Q ss_pred ecc----------cCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE--
Q 016187 187 FSG----------HGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-- 253 (394)
Q Consensus 187 ~~~----------h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-- 253 (394)
+.. +-..+..++++|+ ++++++...++.|++||..+++.+..+... .+...+..++++| +..+.+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCC
Confidence 432 2234789999998 777788888999999999888888777543 2345688899999 433333
Q ss_pred -----EeCCCcEEEEECCCCcEEEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 254 -----GSKDGSVHMVNITTGKVVSSLV---SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 254 -----g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
...+.+|++|++.+++.+..+. .+...+..++++|++.++++...+++|++|++..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3345589999999999988873 5667799999999998888888999999999754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-19 Score=157.97 Aligned_cols=249 Identities=15% Similarity=0.137 Sum_probs=189.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCceEEEEe-cCCCCEEEEEEcCCC
Q 016187 107 KDSVSSLAFSMDGQLLASGGLD------------------------GLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRG 161 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d------------------------~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 161 (394)
...|.+|+++|+|+++++.+.+ ++|.+||..+++....+. .+......++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888877 479999999898876554 334578899999999
Q ss_pred CEEEEecCCCeEEEEeCCccc-eeeee---------cccCcCeEEEEECC-CCCeEEEEe-CCCcEEEEcCCCCceEEEE
Q 016187 162 HIVLAGSEDSTVWMWNADRAA-YLNMF---------SGHGSSVTCGDFTP-DGKTICTGS-DDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 162 ~~l~~~s~d~~i~iw~~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~~l~s~~-~dg~i~vwd~~~~~~~~~~ 229 (394)
+++++...++.|++|+..... .+..+ .++-..+..++|+| +++++++.+ .++.|++|+ .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 999999999999999986542 33333 23445688999999 788888886 699999999 456666555
Q ss_pred cCC-------CCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeCC
Q 016187 230 RGH-------PYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 230 ~~~-------~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
... +.+......++++|+ +.++++...++.|++|+..+++.+..+. .+...+.+++++| +..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~---- 256 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV---- 256 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE----
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe----
Confidence 321 112234788999998 7888888889999999998888887773 3445667777776 222211
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cccCceeEEEEccCCCEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS---GHRDAIQAISVSAHQDFL 376 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l 376 (394)
+++..++...+..|++|+..+++.+..+. ++......|+++|++.++
T Consensus 257 ------------------------------~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 257 ------------------------------NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp ------------------------------ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred ------------------------------CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence 12222333456789999999999998873 667778999999999999
Q ss_pred EEEeCCCcEEEEecc
Q 016187 377 VSVSLDGTARVFEIA 391 (394)
Q Consensus 377 ~s~s~dg~i~iw~~~ 391 (394)
++...+++|++|++.
T Consensus 307 vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEESSSCCEEEEEEE
T ss_pred EEECCCCEEEEEeCC
Confidence 999999999999975
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-18 Score=151.68 Aligned_cols=237 Identities=8% Similarity=0.127 Sum_probs=181.1
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec------ccCcCeEEEEE-CCCCCeEEEEeC-CCcEEEEcC
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------GHGSSVTCGDF-TPDGKTICTGSD-DATLRVWNP 220 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~------~h~~~v~~~~~-~~~~~~l~s~~~-dg~i~vwd~ 220 (394)
...+..++++++++++++.+.++.|.+|+.. ++.+..+. ++...+..+++ .++++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 3567889999999988888889999999987 44444442 24456889999 567776666643 89999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+++.+..+... +...+..++++|+++++++...++.|.+||.. ++.+..+. .+...+..+++++++.++++...
T Consensus 107 ~~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 107 QYGQFVRKFGAT--ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp TTSCEEEEECTT--TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred CCCcEEEEecCc--cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 566666555422 23467899999999988888889999999964 55555553 34457899999999998888888
Q ss_pred CCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeecccC--ceeEEEEccCC
Q 016187 299 DQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDG-KVRVWDSLSGDCVRTFSGHRD--AIQAISVSAHQ 373 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 373 (394)
++.|++||........... +...+..++++++++++++...++ .|++|+. +++.+..+..+.. .+.+++++|++
T Consensus 184 ~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 184 AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC
Confidence 9999999986543322222 225688999999999888888776 9999995 6777777766543 36799999999
Q ss_pred CEEEEEeCCCcEEEEeccC
Q 016187 374 DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 374 ~~l~s~s~dg~i~iw~~~~ 392 (394)
+++++ +.|++|++|++..
T Consensus 263 ~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 263 SVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEE-ETTTEEEEEECSC
T ss_pred cEEEE-CCCCeEEEEEccc
Confidence 88877 6799999999754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-19 Score=161.05 Aligned_cols=253 Identities=11% Similarity=0.099 Sum_probs=177.2
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCceEEEEecCCCCEEEEEEcCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---G--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (394)
+..+++|++.+++... + ..+..++|||||++|+.++.+ + .|.+|++.+++.......+ . +..++|+|+
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCC
Confidence 6778999998876543 3 568899999999999887754 2 4888898888765544433 3 899999999
Q ss_pred CCEEEEecC---------------------------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 161 GHIVLAGSE---------------------------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 161 ~~~l~~~s~---------------------------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
++.|+.++. ...|++|++.+++.++.+.. . .+..++|+|+| +++++..++
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~ 191 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHRE 191 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccc
Confidence 998877763 25789999988776344444 3 77889999999 777776542
Q ss_pred -------cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeccCC
Q 016187 214 -------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--------GSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 214 -------~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~h~ 278 (394)
...||.+.+++ ...+.. + ..+..+ +|+|+.++.++.+ ..|.+|| +++.......+.
T Consensus 192 ~~~~~~~~~~l~~~d~~~-~~~l~~---~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 192 IIPQYFKFWDIYIWEDGK-EEKMFE---K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp SSCCSSCCEEEEEEETTE-EEEEEE---E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred ccccccccccEEEeCCCc-eEEecc---C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 34444433444 333332 1 234443 8999988777644 3688888 565544444566
Q ss_pred CCEEE-EEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeE-EEEECCCCeEEEE
Q 016187 279 DSIEC-IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKV-RVWDSLSGDCVRT 356 (394)
Q Consensus 279 ~~i~~-v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i-~iwd~~~~~~~~~ 356 (394)
..+.. +.|+ ++ ++++++.++.++|| +..........+...|.++.|+| .++++++.++.. .+|.+. ++ ...
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~ 335 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQ 335 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEE
T ss_pred cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEE
Confidence 77886 8999 88 99999999999999 87443334444566789999999 677777777654 677655 54 556
Q ss_pred eecccCce
Q 016187 357 FSGHRDAI 364 (394)
Q Consensus 357 ~~~h~~~v 364 (394)
++.|+..+
T Consensus 336 lt~~n~~~ 343 (347)
T 2gop_A 336 LTDYNDPI 343 (347)
T ss_dssp CCCTTSTT
T ss_pred eccccHhH
Confidence 77766543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-19 Score=160.00 Aligned_cols=256 Identities=12% Similarity=0.126 Sum_probs=180.5
Q ss_pred cCEEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---C--eE
Q 016187 108 DSVSSLAFSMDGQLLASGG---------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---S--TV 173 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s---------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~--~i 173 (394)
..+..+++ ||++++... .++.|.+||+.+++... + ..+..++|+|+|+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677777 888876542 25689999999887543 3 457889999999988877643 2 48
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC---------------------------CcEEEEcCCCCceE
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---------------------------ATLRVWNPKSGENI 226 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------------------------g~i~vwd~~~~~~~ 226 (394)
++|++.+++.......+ . +..++|+|+|+.|+.++.+ ..|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 88888877655544433 3 8899999999998887642 56899999888763
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDG-------SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-------~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
..+.. . .+..+.|+|++ +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|++++|+.++.+
T Consensus 166 ~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 166 EEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred eeecC----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 44443 1 56788999999 877776542 33444433444 3444444 455544 9999998887754
Q ss_pred --------CcEEEEeCCCCCccee-ccCCCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEE
Q 016187 300 --------QKLIIWDLQHSLPRST-CDHEDGVTC-LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 300 --------g~i~iwd~~~~~~~~~-~~~~~~v~~-~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
..|.+|| ....... ..+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+.+.|.+++|
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDV 309 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEE
T ss_pred ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeee
Confidence 3688888 3322222 234556775 8898 88 89999999999999 8766654 44445778999999
Q ss_pred ccCCCEEEEEeCCCcE-EEEec
Q 016187 370 SAHQDFLVSVSLDGTA-RVFEI 390 (394)
Q Consensus 370 ~~~~~~l~s~s~dg~i-~iw~~ 390 (394)
+| .++++++.++.. ++|.+
T Consensus 310 s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp SS--SEEEEEECSSSCCEEEEE
T ss_pred eC--cEEEEEcCCCChHHheEe
Confidence 99 777888777765 78865
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-18 Score=149.34 Aligned_cols=242 Identities=12% Similarity=0.184 Sum_probs=181.8
Q ss_pred cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec------CCCCEEEEEE-cCCCCEEEEecC-CCeEEE
Q 016187 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG------PGGGVEWVSW-HPRGHIVLAGSE-DSTVWM 175 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~s~-d~~i~i 175 (394)
.+|-..+.+++++++|+++++.+.++.|++||.. ++....+.. +...+..+++ .+++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566789999999999998888889999999987 665555532 2346788999 567777766643 899999
Q ss_pred EeCCccceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE
Q 016187 176 WNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 176 w~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g 254 (394)
|+. +++.+..+. .+...+.+++++|+|+++++...++.|.+||.. ++.+..+... .+...+..++++++++++++.
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSSEEEEEE
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECCCCCEEEEE
Confidence 994 455555443 344578899999999988888888999999964 5555554321 123458899999999988888
Q ss_pred eCCCcEEEEECCCCcEEEEeccC--CCCEEEEEECCCCCeEEEEeCCC-cEEEEeCCCCCcceeccC--CCCEEEEEEeC
Q 016187 255 SKDGSVHMVNITTGKVVSSLVSH--TDSIECIGFSRSSPWAATGSMDQ-KLIIWDLQHSLPRSTCDH--EDGVTCLMWLG 329 (394)
Q Consensus 255 ~~dg~i~i~d~~~~~~~~~~~~h--~~~i~~v~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~ 329 (394)
..++.|++||. .++.+..+..+ ...+..+++++++.++++...++ .|.+|+...........+ ...+.++++.|
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECC
Confidence 88999999997 45666666443 36789999999999888888776 999999764433332222 23477899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
+++++++ +.+++|++|+....
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcEEEE-CCCCeEEEEEcccc
Confidence 9987777 67999999987543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-18 Score=156.71 Aligned_cols=269 Identities=12% Similarity=0.102 Sum_probs=198.4
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
..|.++.|++++..++..+.++.++.| .++....+..+...+..++|+|++++++++..++.|++|+..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346788899988888777888999999 35556666667777899999999998888889999999999887765544
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCC----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC------C
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK------D 257 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~------d 257 (394)
..+...+.+++++|+|+++++...+ +.|.+||..+++....+... .....+..+.++|+++++++... .
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEeccccccCCC
Confidence 4566789999999999988877766 68999999877654333321 13356889999999998887654 3
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCC-Ccce------eccC--CCCEEEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHS-LPRS------TCDH--EDGVTCLMW 327 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd~~~~-~~~~------~~~~--~~~v~~~~~ 327 (394)
+.|..++..+++... +..+...+..++|+|++.++ ++.+.++.|.+|++... .... .... ...+..+++
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 240 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 240 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence 567777776655432 22333457899999999855 45556789999998532 1110 1111 135778999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC------ceeEEEEccCCCEEEEEeCC
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD------AIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~~~~~~~l~s~s~d 382 (394)
.++++++++...++.|.+||. .++.+..+..+.. .+.+++|+++++.|+.++.+
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999998888888899999998 5777777765433 68999999998776655544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-18 Score=155.65 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=191.1
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.|.+++|+|. ...+++.+.++.++.| .++....+..+...+.+++|+|+|++++++..++.|.+||..+++.....
T Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 7 DLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred ccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 4667788884 4455566778888888 34556667777788899999999998888888999999999988766544
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCC----CeEEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeC------CC
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD------DA 213 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d----~~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~------dg 213 (394)
..+...+..++++|+++++++...+ +.|.+|+..++.....+. .+...+.+++++|+|+++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4556789999999999988887766 789999988766543332 24457889999999988777654 35
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCC-CcEEEE--------eccCCCCEEE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITT-GKVVSS--------LVSHTDSIEC 283 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~-~~~~~~--------~~~h~~~i~~ 283 (394)
.|..+|..+++...... ....+..++++|+++.+ ++.+.++.|.+|++.+ ++.+.. +..+ ..+..
T Consensus 163 ~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 237 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDS 237 (333)
T ss_dssp EEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEE
T ss_pred eEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCc
Confidence 67777766554332221 12346789999999855 5556688999999863 332211 1122 46788
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCC------CCEEEEEEeCCCCEEEEEeCCC
Q 016187 284 IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE------DGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+++++++.+.++...++.|.+||...........+. ..+.+++|+++++.|+.++.++
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred eEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 999999998888888899999998543222221221 1578899999987777666553
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-17 Score=157.44 Aligned_cols=313 Identities=12% Similarity=0.036 Sum_probs=222.1
Q ss_pred CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEEecCCCCEEE
Q 016187 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEW 154 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~--~~~~~~~~~~~~~~v~~ 154 (394)
..++++...+++|.++|..+++.+..+... ..+..+.|||||+++++++.|+.|.+||+. +++.+..+... .....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCce
Confidence 457788889999999999999988888643 357799999999999999999999999996 77777777643 34678
Q ss_pred EEEc----CCCCEEEEec-CCCeEEEEeCCccceeeeecc----------cCc-CeEEEEECCCCCe-EEEEeCCCcEEE
Q 016187 155 VSWH----PRGHIVLAGS-EDSTVWMWNADRAAYLNMFSG----------HGS-SVTCGDFTPDGKT-ICTGSDDATLRV 217 (394)
Q Consensus 155 ~~~~----~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~-l~s~~~dg~i~v 217 (394)
++|+ |++++++++. .++++.++|..+.+.++.+.. |.. .+..+.+++++.. +++...+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 6999877665 468999999988887766542 212 5677888887654 556667799999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEecc-----CCCCEEEEEECCC-C
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVS-----HTDSIECIGFSRS-S 290 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~-----h~~~i~~v~~~~~-~ 290 (394)
+|....+.+...... .......+.|+|++++++++. .+++|.++|+.+++++..+.. |.+.-.. -++|+ +
T Consensus 325 vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g 401 (567)
T 1qks_A 325 VDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFG 401 (567)
T ss_dssp EETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTE
T ss_pred EecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCC
Confidence 998876543322110 123456788999999887655 678999999999988776643 3221111 25787 4
Q ss_pred CeEEEEe-CCCcEEEEeCCCC-------Ccceecc-CCCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCCC---
Q 016187 291 PWAATGS-MDQKLIIWDLQHS-------LPRSTCD-HEDGVTCLMWLGTSKYVVTGCV-------DGKVRVWDSLSG--- 351 (394)
Q Consensus 291 ~~l~s~s-~dg~i~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~-------dg~i~iwd~~~~--- 351 (394)
+..+++. .+++|.++|.... ....... ....-.-+..+|++++|.+... ..+|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 4555554 4689999998752 2212211 1222233567899999988663 459999998766
Q ss_pred --e-EEEEee--------cccCceeEEEEccCCCEEEEEe-----CCCcEEEEeccCCC
Q 016187 352 --D-CVRTFS--------GHRDAIQAISVSAHQDFLVSVS-----LDGTARVFEIADFK 394 (394)
Q Consensus 352 --~-~~~~~~--------~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iw~~~~~~ 394 (394)
. ....+. .-...+..+.|+++|+++.... .++.|.++|.+++|
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 2 223332 1245788999999998766542 37999999987654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-17 Score=146.39 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=181.2
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....+..+.....+++|+|++..+++++..++.++.|+..++ ...+..+...+.+++++|+|+++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 344455566678899999976558888899999999999877 566667788899999999999888877778999999
Q ss_pred CCCCceEEEEecC----CCCEEEEEEcCCCCEEEE----ec-------------CCCeEEEEeCCccceeeeecccCcCe
Q 016187 136 PSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLA----GS-------------EDSTVWMWNADRAAYLNMFSGHGSSV 194 (394)
Q Consensus 136 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~s-------------~d~~i~iw~~~~~~~~~~~~~h~~~v 194 (394)
..+++........ ...+..+++.|+|+++++ |+ ..+.|+.++.. ++ ...+..+...+
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~ 174 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP 174 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence 9888765433221 234567999999998887 33 13466666665 33 33444566677
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCC-CCce---EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPK-SGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
..++|+|+++.+++.+.++.|.+|++. +++. ...+ . .....+..++++++|+++++. ++.|.+|+.. ++.
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 899999999998888888999999986 4443 2233 1 133446678999999977766 8899999986 777
Q ss_pred EEEeccCCCCEEEEEE-CCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 271 VSSLVSHTDSIECIGF-SRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~-~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
+..+..+.. +.+++| +|++..|++++.++ +.-+++.+..
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 777777777 899999 68988888888764 4445555443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-16 Score=136.17 Aligned_cols=280 Identities=8% Similarity=0.037 Sum_probs=203.3
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+..+...+.+++++++|+++++...++.|.+||.. ++..... ......+..+++.+++.++++...++.|..|+....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 44456789999999999988877668899999988 6544322 234567899999999998888887899999998632
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
............+.++++.++|+++++...++.|.+||. +++... +.. +.....+..+++++++.++++...++.|.
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YEL-PNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecC-CCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 111122234557889999999988888777889999998 554332 221 11234688999999999888887789999
Q ss_pred EEECCCCcEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEe
Q 016187 262 MVNITTGKVVSS-LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 262 i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
.||. +++.... +..+...+..+++++++.+.++...++.|.+||. ....... ..+...+.++++.++++..++..
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence 9999 6665432 3334556889999999988777777889999998 4332221 12345688999999998777766
Q ss_pred CCCeEEEEECCCCeEEEEe--ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 339 VDGKVRVWDSLSGDCVRTF--SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.++.|..||. +++. ..+ ..+...+.++++ +++.++++.+ .+.+..++.+.
T Consensus 244 ~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 244 GANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp TTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 7899999998 4543 333 345567899999 8888887766 45566666543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-15 Score=133.61 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=200.3
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
..+...+.++++.|+ +.++++...++.+.+|+.. ++.... +..+...+.+++++++|.++++...++.|..|+.. +
T Consensus 11 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 345568999999996 4566666667899999987 554432 23455789999999999988887778899999976 4
Q ss_pred ceEE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 140 NLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 140 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+... .+......+..+++.+++.++++...++.|..|+. +++... ....+...+..+++.++|+..++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 4322 22224557889999999998888888899999998 443332 22334556889999999988887777889999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
||. +++... +.. +.....+..+++++++.++++...++.|.+||. +++.... +..+...+.++++++++.+.++.
T Consensus 167 ~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-SGDITE-FKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-CCcEEE-eeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 998 665433 211 112345788999999998888777899999999 6664332 23345678999999999877776
Q ss_pred eCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 297 SMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
..++.|..||......... ..+...+.++++ +++.+.++.. .+.|..++..++
T Consensus 243 ~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 243 WGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred cCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 6788999999843211111 123456888988 8887766655 566777776554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-17 Score=145.70 Aligned_cols=274 Identities=9% Similarity=-0.019 Sum_probs=199.0
Q ss_pred CCCeEEEEEcCCCeeeEeec------CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 85 GDDKGFFWRINQGDWASEIQ------GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~~~~------~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
.++.+.++|.++++....+. ........+.+. +++++++...++.|.+||..+++.+.++.. ......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence 48999999999998776542 122456778874 345556666689999999999999888753 4568889999
Q ss_pred CCCCEEEEecCCCeEEEEeCCccceeeeecccC-----cCeEEEEECCCCCeEEEEe--CCCcEEEEcCCCCceEEEEcC
Q 016187 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~ 231 (394)
++++++++...++.|.+||..+++....+.... .....+++ ++..|+.+. .++.|.++|+.+++....+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 988655555588999999999888766554332 13456666 344554444 489999999999887776653
Q ss_pred CCCcccCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCCC
Q 016187 232 HPYHTEGLTCLTISADSTLALSGSKD----------GSVHMVNITTGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 232 ~~~~~~~i~~~~~~~~~~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
. .....+.++|++++++++..+ +.|.++|..+++....+... ......++++|++.+|..+..
T Consensus 171 g----~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 171 G----IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp S----SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred C----CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 2 234567889999988777655 78999999999887766532 236889999999998887765
Q ss_pred cEEEEeCCCCCcce--eccC-CCCEEEEEEeCC-CCEEEEE----eCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 301 KLIIWDLQHSLPRS--TCDH-EDGVTCLMWLGT-SKYVVTG----CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 301 ~i~iwd~~~~~~~~--~~~~-~~~v~~~~~~~~-~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
.|.+||+.+..... .... ......++++|+ +...++. ..++.|.+||.. ++.+.++..-.. -..++|.
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~~ 320 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCWK 320 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEEe
Confidence 89999987654321 1111 356889999994 5555555 578999999998 999988875333 3567764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-17 Score=144.20 Aligned_cols=236 Identities=12% Similarity=0.057 Sum_probs=175.6
Q ss_pred EEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 142 KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
+..+.........++|+|+++ +++++..++.|+.|+..++ ...+..+...+.+++++|+|+++++...++.|.+||.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 344455556678899999998 7888888999999999877 5556667778899999999998888777899999999
Q ss_pred CCCceEEEEcCCC-CcccCeEEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCcEEEEeccCCCCEE
Q 016187 221 KSGENIHVIRGHP-YHTEGLTCLTISADSTLALSG----S-------------KDGSVHMVNITTGKVVSSLVSHTDSIE 282 (394)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g----~-------------~dg~i~i~d~~~~~~~~~~~~h~~~i~ 282 (394)
.+++......... .....+..++++|+|+++++. + ..+.|..++.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 8877543322111 112245678999999988873 2 13466667665 44 334455667789
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCC-CCCc---c-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQ-HSLP---R-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
.++|+|++.++++.+.++.|.+|++. .... . ....+...+..+++.++++++++. ++.|.+|+.. ++.+..+
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 99999999988777888999999986 2222 1 111233445678999999877666 8899999986 8888888
Q ss_pred ecccCceeEEEE-ccCCCEEEEEeCCCcE
Q 016187 358 SGHRDAIQAISV-SAHQDFLVSVSLDGTA 385 (394)
Q Consensus 358 ~~h~~~v~~l~~-~~~~~~l~s~s~dg~i 385 (394)
..+.. +++++| +++++.|+.++.++..
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 88777 999999 5899988888877533
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-17 Score=161.46 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=174.2
Q ss_pred CEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc-----------
Q 016187 151 GVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT----------- 214 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~----------- 214 (394)
.+..++|+|+|++|+.++.++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 578899999999888665433 8999999988766532222 23567899999999999888766
Q ss_pred -----EEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-EEEEec
Q 016187 215 -----LRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSK-----DGSVHMVNITT------GK-VVSSLV 275 (394)
Q Consensus 215 -----i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-----dg~i~i~d~~~------~~-~~~~~~ 275 (394)
|++|++.+++. ...... ..+...+..+.++|+|++++.++. +..|++||+.+ +. ....+.
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred CCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 99999988763 222222 123345778999999999887764 56899999976 43 355566
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCc---ceeccCCC--CEEEEEEeCCCCEEEEEeCCCe--EE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMD----QKLIIWDLQHSLP---RSTCDHED--GVTCLMWLGTSKYVVTGCVDGK--VR 344 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~d----g~i~iwd~~~~~~---~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~--i~ 344 (394)
.+...+.. .|+|++..|+..+.. ..|.+||+..... .....+.. .+..+.|++++.+++++..++. |+
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence 66666655 478888877766553 3699999876532 33344443 5778899988888888888885 66
Q ss_pred EEECCCCeEEEEeecccCceeEEEEccCCCEEE-EEe---CCCcEEEEeccC
Q 016187 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV-SVS---LDGTARVFEIAD 392 (394)
Q Consensus 345 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s---~dg~i~iw~~~~ 392 (394)
+|+..+++.++.+..+.+.|..+.++|+++.++ +.+ ..++|..|++.+
T Consensus 363 ~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 678778888888888888889999999987655 333 357899998764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=167.57 Aligned_cols=247 Identities=12% Similarity=0.059 Sum_probs=165.9
Q ss_pred CcccCEEEEEEcCCCCEEE-----EEeCCCcEEEEeCCCCceE-EEEecCCCCEEEEEEcCCCCEEEEecCCCe------
Q 016187 105 GHKDSVSSLAFSMDGQLLA-----SGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDST------ 172 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~-----t~s~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~------ 172 (394)
+|...+.+++|||||++|| .|+.+.+|++||+.+++.+ .. .........++|+|+++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 5666799999999999998 4444578999999998864 11 111111256899999999998888766
Q ss_pred -------EEEEeCCccc----eeeeecccCcCeEEEEECCCCCeEEEEeCCC----cEEEEcCCCCceEEEEcCCCCccc
Q 016187 173 -------VWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 173 -------i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~ 237 (394)
|++|++.++. .+.....|...+..+.|+|+|++|+.++.++ .|.+|+..+++.. .+..+ ..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~---~~ 272 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKG---VG 272 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEEC---SS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecC---CC
Confidence 9999998765 2333334556788999999999998887666 6788876555433 33321 22
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCcE--EEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC--
Q 016187 238 GLTCLTISADSTLALSGS---KDGSVHMVNITTGKV--VSSLVSH--TDSIECIGFSRSSPWAATGSMDQKLIIWDLQ-- 308 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~--~~~~~~h--~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~-- 308 (394)
......+ +++.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++.++++...|+..+||.+.
T Consensus 273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 3444445 5556444444 358899999987642 2333333 4468888888 67788899999988887553
Q ss_pred CCCcceeccC-CCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCeEEEEeec
Q 016187 309 HSLPRSTCDH-EDGVTCLMWLGTSKYVVTG----CVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 309 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.........+ ...+..+.++|+++.++.. ...++|++||+.+++. ..++.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~ 405 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAK 405 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEec
Confidence 2222222222 4456677788888777633 2347899999988763 33443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-16 Score=137.20 Aligned_cols=239 Identities=9% Similarity=-0.005 Sum_probs=172.7
Q ss_pred cEEEEEEcCCCCcEEE-EecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 66 EVYSVACSPTDATLVA-TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 66 ~v~~~~~~p~~~~~la-sg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
...+++++|++ .+++ +.+.++.+.+|+..+.........+...+.+++++++|+++++.. ++.|.+||....... .
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 67889999964 5666 557789999999766544332233445688999999999766665 889999998765443 2
Q ss_pred Ee-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC
Q 016187 145 LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 145 ~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 223 (394)
+. .....+..+++.++++++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 22 22356889999999998888788899999976554433222233345678999999997777777889999998766
Q ss_pred ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
....... .....+..+++++++.++++...++.|.+|+............+...+.++++++++.++++...+++|+
T Consensus 182 ~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 NQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp CEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 5432211 1225678999999998888888889999999876544332223346789999999999888889999999
Q ss_pred EEeCCCC
Q 016187 304 IWDLQHS 310 (394)
Q Consensus 304 iwd~~~~ 310 (394)
++++...
T Consensus 259 ~~~~~~~ 265 (270)
T 1rwi_B 259 KLTSLEH 265 (270)
T ss_dssp EECCCGG
T ss_pred EEcCCCc
Confidence 9987643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-14 Score=139.90 Aligned_cols=289 Identities=13% Similarity=0.079 Sum_probs=208.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcC--CCeeeEeecCcccCEEEEEEc----CCCCEEEEEeC-CCcEEEEeCCC
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFS----MDGQLLASGGL-DGLVQIWDPSS 138 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~--~~~~~~~~~~h~~~V~~v~~s----~~g~~l~t~s~-d~~i~vwd~~~ 138 (394)
.+..++++|++ +++..++.|+.|.+||+. +++.+..+..... ...++|+ |||++++++.. +++|.|+|..+
T Consensus 198 ~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 198 AVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp CEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 56789999965 455566789999999995 7777777765433 5789999 69998887764 58999999999
Q ss_pred CceEEEEecC-----------CCCEEEEEEcCCCCE-EEEecCCCeEEEEeCCccceee--eecccCcCeEEEEECCCCC
Q 016187 139 GNLKCTLEGP-----------GGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 139 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~s~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~ 204 (394)
.+.+..+... ...+..+..++++.. ++....+|.|.++|....+.+. .+ ........+.|+|+|+
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence 9888766421 225777888887664 4556677999999987643222 22 2334566789999999
Q ss_pred eEEEEe-CCCcEEEEcCCCCceEEEEcC-C-CCcc-cCeEEEEEcCCC-CEEEEEe-CCCcEEEEECCC-------CcEE
Q 016187 205 TICTGS-DDATLRVWNPKSGENIHVIRG-H-PYHT-EGLTCLTISADS-TLALSGS-KDGSVHMVNITT-------GKVV 271 (394)
Q Consensus 205 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~-~-~~~~-~~i~~~~~~~~~-~~l~~g~-~dg~i~i~d~~~-------~~~~ 271 (394)
+|+++. .++.|.++|+.+++.+..+.. . ..|. .++. + ++|++ .+++++. .+++|.++|..+ .+.+
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 886655 678899999999987766643 1 1232 2333 2 57874 4445554 568999999987 6778
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeC-------CCcEEEEeCCCC-----Ccc-eec---------cCCCCEEEEEEeC
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSM-------DQKLIIWDLQHS-----LPR-STC---------DHEDGVTCLMWLG 329 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~-------dg~i~iwd~~~~-----~~~-~~~---------~~~~~v~~~~~~~ 329 (394)
.++......-..+..+|+++++..... .++|.++|+.+. ... ... .-...+..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 887655444345788999999888663 458999998755 211 111 0134688999999
Q ss_pred CCCEEEEEeC-----CCeEEEEECCCCeEEEEeec
Q 016187 330 TSKYVVTGCV-----DGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 330 ~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~ 359 (394)
+|+++..+.. ++.|.|+|..+++++++++.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9998877643 79999999999999988875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-16 Score=137.06 Aligned_cols=240 Identities=9% Similarity=-0.022 Sum_probs=173.8
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 109 SVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
...+++++++|++++ +.+.++.|.+|+..++............+..+++.++++++++.. ++.|.+|+..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 547789999999766543322122334577899999999777766 889999998765433222
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
......+..+++.|+|+.+++...++.|.+|+..+........ .....+..++++++++++++...++.|.+|+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 2233568899999999988887788999999866544322111 1123467789999999888887889999999987
Q ss_pred CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 268 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
.........+...+..+++++++.++++...++.|.+|+.......... .+...+.++++.++++++++...+++|+++
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 7655443344467899999999987777777899999998765433222 223568899999999988888899999999
Q ss_pred ECCCCe
Q 016187 347 DSLSGD 352 (394)
Q Consensus 347 d~~~~~ 352 (394)
+....+
T Consensus 261 ~~~~~~ 266 (270)
T 1rwi_B 261 TSLEHH 266 (270)
T ss_dssp CCCGGG
T ss_pred cCCCcc
Confidence 876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-16 Score=136.41 Aligned_cols=214 Identities=11% Similarity=0.046 Sum_probs=170.4
Q ss_pred CCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccC
Q 016187 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 160 ~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
.+++|++++.++.|.+||.++++.+..+..+. ..+.+++++|+|++++ +.++.|..||. +++.+..+... ....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--AGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--TTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--CCcc
Confidence 35789999999999999999999888887765 4678899999999888 45788999999 78887777642 1234
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEecc------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 239 LTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVS------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
+.++.+.++|+++++.+. ++.+..+|. +|+.+.++.. +......+.+.+++.++++...+++|..||.. ..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 778899999999999887 888888886 6777766531 22345566789999999999999999999987 54
Q ss_pred cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc------CceeEEEEccCCCEEEEEe
Q 016187 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR------DAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~s~s 380 (394)
..........+.++...++++++++++.+++|..+|..+|+.+.++..+. ..+..++..++++++++..
T Consensus 157 ~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 44444434455667788999999999989999999999999999887542 2267888889999888874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-14 Score=125.29 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=200.6
Q ss_pred cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
......+.+++++++|+++++...++.|.+||.. ++.... +......+..+++.+++.++++...++.|..|+.. ++
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3445678999999999988877778999999988 655432 22233678899999999988887778999999987 44
Q ss_pred eee-eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 183 YLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 183 ~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
... ........+.++++.++|+++++...++.|..+|.. ++.. .+.. +.....+..+++.++++++++...++.|.
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDL-PNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccC-CCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 322 222234678899999999988887778899999987 5543 2221 11234688999999999877777788999
Q ss_pred EEECCCCcEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeC
Q 016187 262 MVNITTGKVVSS-LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 262 i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
.++. +++.... ...+...+..+++++++.+.++....+.|..|+.......... .....+.++++.+++++.++...
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 9998 5554432 2234456889999999987777777788999998433222111 23456889999999987777667
Q ss_pred CCeEEEEECCCCeEEE-EeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 340 DGKVRVWDSLSGDCVR-TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++.|..|+. +++... .+......+.++++.++++++++.. . .|..++.+
T Consensus 250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 799999998 454432 2333455688999999998777665 4 66666643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-16 Score=134.98 Aligned_cols=212 Identities=12% Similarity=0.081 Sum_probs=169.3
Q ss_pred CcEEEEecCCCeEEEEEcCCCeeeEeecCcc-cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEE
Q 016187 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEW 154 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~ 154 (394)
+++|++++.|+.+++||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +|+.+..+..+. ..+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 4688999999999999999999999888776 5789999999999998 45788999999 899888887653 46888
Q ss_pred EEEcCCCCEEEEecC-CCeEEEEeCCccceeeeec------ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEE
Q 016187 155 VSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 227 (394)
+.+.++++++++.+. ++.+..++. +++.+..+. ++......+++.++|+++++...++.|..||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 999999999998877 778888876 455444432 122234456789999999999999999999988 88877
Q ss_pred EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC------CCEEEEEECCCCCeEEEEe
Q 016187 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT------DSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~------~~i~~v~~~~~~~~l~s~s 297 (394)
.+... .....+...+++.+++++..++.|..+|..+|+.+-++..+. ..+..++..+++.++++..
T Consensus 160 ~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 160 SVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 77642 234456778999999999989999999999999988875432 2367788888888777663
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-16 Score=155.81 Aligned_cols=246 Identities=11% Similarity=0.040 Sum_probs=174.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCC-----CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc------
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGD-----DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL------ 130 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d-----~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~------ 130 (394)
+|+..+..++|||++ ++||.+..+ .++++||+.+++.......+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccc
Confidence 355568899999965 455544322 289999999998766433222 3678999999999999988766
Q ss_pred ----------EEEEeCCCCce--EEEEec--CCCCEEEEEEcCCCCEEEEecC-----CCeEEEEeCCc------cc-ee
Q 016187 131 ----------VQIWDPSSGNL--KCTLEG--PGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADR------AA-YL 184 (394)
Q Consensus 131 ----------i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~s~-----d~~i~iw~~~~------~~-~~ 184 (394)
|++|++.++.. ...+.. +...+..+.|+|++++|+..+. +..+++|++.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988763 223333 3445788999999998877654 67899999876 42 34
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCC----CcEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
..+..+...+.. .|+|+|+.|+..+.. +.|.+||+.+++ ....+..+. ....+..+.+++++.++++...++
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETT
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECC
Confidence 555566555544 588999887766543 369999998764 223333221 112477788888888888888888
Q ss_pred c--EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE-e---CCCcEEEEeCCCCC
Q 016187 259 S--VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG-S---MDQKLIIWDLQHSL 311 (394)
Q Consensus 259 ~--i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-s---~dg~i~iwd~~~~~ 311 (394)
. |.+|++.+++.+..+..+...+..+.++|++..++.. + ..+++.+||+.+..
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 6667887888778887787888999999998765533 2 35789999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-14 Score=130.56 Aligned_cols=262 Identities=12% Similarity=0.037 Sum_probs=183.5
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEEecC-------CC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGP-------GG 150 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd~~~~~~~~~~~~~-------~~ 150 (394)
+|.++|..+++.+..+..-..+ .++|||||++|+.+. .++.|.+||..+.+.+..+.-. ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 8899999999988888754444 899999999998875 3678999999988887766432 12
Q ss_pred CEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeee-ecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceE
Q 016187 151 GVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
....+.|+|++++|+++.. ++.|.++| .+++.+.. +.... |+.+.|++ +.+++.+.||.+.++|. +++..
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 3457899999999988764 57899999 98887766 54222 24555655 45667788999999999 77765
Q ss_pred EEEcCCC--CcccCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccC----------CCCEEEEEECCCCC
Q 016187 227 HVIRGHP--YHTEGL-TCLTISADSTLALSGSKDGSVHMVNITTGK--VVSSLVSH----------TDSIECIGFSRSSP 291 (394)
Q Consensus 227 ~~~~~~~--~~~~~i-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h----------~~~i~~v~~~~~~~ 291 (394)
....... ....++ ....+.+++..++..+..+.+.++|+.++. .+..+... ......++++|++.
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 3322100 011111 223445555444444467899999987652 22322111 12244578899988
Q ss_pred eEEEEeC----------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEEECCCCeEEEEe
Q 016187 292 WAATGSM----------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 292 ~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~ 357 (394)
.+..+.. ++.|.++|+.+........-.....+++|+|+++ +++++. .++.|.++|..+++.++++
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7766543 3579999998876655554445688999999999 777776 5899999999999999884
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=157.35 Aligned_cols=272 Identities=12% Similarity=0.023 Sum_probs=182.5
Q ss_pred cCCCCEEEEEeCCC---cEEEE--eCCCCceEEEEe------cCCCCEEEEEEcCCCCEEE-----EecCCCeEEEEeCC
Q 016187 116 SMDGQLLASGGLDG---LVQIW--DPSSGNLKCTLE------GPGGGVEWVSWHPRGHIVL-----AGSEDSTVWMWNAD 179 (394)
Q Consensus 116 s~~g~~l~t~s~d~---~i~vw--d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~-----~~s~d~~i~iw~~~ 179 (394)
+|+|++++-...++ .-.+| +...++....+. ++...+..++|+|+|++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37788777665443 23344 444444333322 2333688899999999888 45556799999999
Q ss_pred cccee-eeecccCcCeEEEEECCCCCeEEEEeCCCc-------------EEEEcCCCCce--EEEEcCCCCcccCeEEEE
Q 016187 180 RAAYL-NMFSGHGSSVTCGDFTPDGKTICTGSDDAT-------------LRVWNPKSGEN--IHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 180 ~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~ 243 (394)
+++.+ .... .......++|+|||+.|+.++.|.. |++|++.+++. ...... +.+...+..+.
T Consensus 156 tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEE
T ss_pred CCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEE
Confidence 88764 2111 1111256899999999999988776 99999988762 222222 22334678899
Q ss_pred EcCCCCEEEEEeCCC----cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe---CCCcEEEEeCCCCCc---c
Q 016187 244 ISADSTLALSGSKDG----SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS---MDQKLIIWDLQHSLP---R 313 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~ 313 (394)
++|+|++++.++.++ .|.+++..+++ ...+..+...+....+ +++.++++.. .+++|.+||+.+... .
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 999999988877666 67778765554 3344455556666666 4555555544 257899999876542 3
Q ss_pred eeccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecc-cCceeEEEEccCCCEEE----EEeCCCcE
Q 016187 314 STCDH--EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL-SGDCVRTFSGH-RDAIQAISVSAHQDFLV----SVSLDGTA 385 (394)
Q Consensus 314 ~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~l~----s~s~dg~i 385 (394)
....+ ...+..+.|+ ++.++++...|+..++|... +++.++.+..+ .+.|..++++|+++.++ +....++|
T Consensus 312 ~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 33333 3457778888 67788899999998888554 46667777765 66788889999988766 33345789
Q ss_pred EEEeccC
Q 016187 386 RVFEIAD 392 (394)
Q Consensus 386 ~iw~~~~ 392 (394)
++|++.+
T Consensus 391 ~~~d~~~ 397 (695)
T 2bkl_A 391 YKTSVST 397 (695)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-16 Score=138.74 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=184.8
Q ss_pred CCCcEEEEeCCCCceEEEEe------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEEC
Q 016187 127 LDGLVQIWDPSSGNLKCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~ 200 (394)
.+++|.++|..+++....+. ........+.+. .++++++...++.|.+||..+++.+..+. ....+..++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999988754431 112345667774 45566777778999999999998887774 34567889999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccC
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h 277 (394)
++++..++...++.|.+||+.+++....+.... ........+++ .+++++++.. .++.|.++|+.+++.+..+...
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 988555555489999999999988766655322 00012334555 3444555544 4899999999999988777543
Q ss_pred CCCEEEEEECCCCCeEEEEeCC----------CcEEEEeCCCCCcceeccC--CCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSMD----------QKLIIWDLQHSLPRSTCDH--EDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
.....+.++|++++++++..+ +.|.++|..+......... ......++++|++++|.++.. .|.+
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 345678999999877776554 7899999887654433322 236789999999999888754 8999
Q ss_pred EECCCCeEEE-E-eecccCceeEEEEcc-CCCEEEEE----eCCCcEEEEecc
Q 016187 346 WDSLSGDCVR-T-FSGHRDAIQAISVSA-HQDFLVSV----SLDGTARVFEIA 391 (394)
Q Consensus 346 wd~~~~~~~~-~-~~~h~~~v~~l~~~~-~~~~l~s~----s~dg~i~iw~~~ 391 (394)
||..+++... . +..+......++++| ++.++++. ..++.|.+|+.+
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9998887642 1 222245678999999 56677776 678999999865
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-14 Score=123.17 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=197.0
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
......++++.|+ +.+.++...++.+.+|+.. ++... .+..+...+.+++++++|+++++...++.|.++|.. ++.
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4557889999985 5566666678999999987 65543 233445679999999999988877778899999987 655
Q ss_pred EE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 142 KC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 142 ~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
.. .+......+..+++.++++++++...++.|..++.. ++... .+......+.++++.++++..++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 32 222234678899999999988888778899999987 44332 2233455788999999999777776688999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccCCCCEEEEEECCCCCeEEEEeC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
. +++... +.. +.....+..+++++++.++++....+.|.+++. +++.... +..+...+.++++++++.+.++...
T Consensus 174 ~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 174 N-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp T-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred C-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 8 555433 221 122346889999999988887777888999998 5554432 3334567889999999987777767
Q ss_pred CCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 299 DQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
++.|..|+.......... .....+.+++..+++.+.++.. . .|..++.
T Consensus 250 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 789999998432221111 1234577888888887666554 4 6666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-14 Score=129.34 Aligned_cols=269 Identities=13% Similarity=0.062 Sum_probs=186.4
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEeC
Q 016187 114 AFSMDGQLLASGGL--DG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNA 178 (394)
Q Consensus 114 ~~s~~g~~l~t~s~--d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d~~i~iw~~ 178 (394)
...|++++++++.. .. +|.++|..+++.+..+.....+ .++++|+++.++.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34577777766653 22 8899999999988777654444 899999999888775 3678999999
Q ss_pred Cccceeeeeccc-------CcCeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCCC
Q 016187 179 DRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 179 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 248 (394)
.+.+.+..+... ......++|+|+|++|+.+.. +.+|.++| .+++.+.. +... .++.+.|++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-------~~~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-------TCYHIHPGA 176 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-------ceEEEEeCC
Confidence 887766654321 123457899999999998874 57899999 99887665 4321 123444554
Q ss_pred -CEEEEEeCCCcEEEEECCCCcEEEEec-----cCCCCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--ecc--
Q 016187 249 -TLALSGSKDGSVHMVNITTGKVVSSLV-----SHTDSI-ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCD-- 317 (394)
Q Consensus 249 -~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~h~~~i-~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-- 317 (394)
+.+++.+.||++.+++. +++...... ....++ ....+.+++..++..+..+.+.+.|+....... ...
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 45667778999999999 887663321 111221 223455555544444467889988885432111 000
Q ss_pred ---------CCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEE
Q 016187 318 ---------HEDGVTCLMWLGTSKYVVTGCV----------DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLV 377 (394)
Q Consensus 318 ---------~~~~v~~~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~ 377 (394)
.......+.++++++.+..+.. .+.|.++|..+++.++++.. ......++|+||++ +++
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLY 334 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEE
Confidence 1223444778999888777653 35799999999999999864 33578999999999 677
Q ss_pred EEe-CCCcEEEEeccCCC
Q 016187 378 SVS-LDGTARVFEIADFK 394 (394)
Q Consensus 378 s~s-~dg~i~iw~~~~~~ 394 (394)
++. .++.|.+||.++.|
T Consensus 335 v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 335 ALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEcCCCCeEEEEECCCCC
Confidence 776 58999999988764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-15 Score=135.65 Aligned_cols=293 Identities=14% Similarity=0.143 Sum_probs=200.4
Q ss_pred EcCCCCcEEEEecC----CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 016187 72 CSPTDATLVATGGG----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPS 137 (394)
Q Consensus 72 ~~p~~~~~lasg~~----d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd~~ 137 (394)
..|++..++++-.. ++.+.+.|..+++.+..+..-..+ . +++||||++|++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 35655555554333 679999999999999888755555 4 99999999887765 36789999999
Q ss_pred CCceEEEEecCC-------CCEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 138 SGNLKCTLEGPG-------GGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 138 ~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+++.+.++.-.. .....+.|+|++++++++.. ++.|.++|+.+.+.+..+..... ...+....+.+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEE
Confidence 999888775332 23456899999998887753 68999999999988887753221 1223334567778
Q ss_pred EeCCCcEEEEcCCC-CceEEEEcCCCCc--ccCeE-EEEE-cCCCCEEEEEeCCCcEEEEECCCCc--EEEEec--c---
Q 016187 209 GSDDATLRVWNPKS-GENIHVIRGHPYH--TEGLT-CLTI-SADSTLALSGSKDGSVHMVNITTGK--VVSSLV--S--- 276 (394)
Q Consensus 209 ~~~dg~i~vwd~~~-~~~~~~~~~~~~~--~~~i~-~~~~-~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~--~--- 276 (394)
.+.||++.+.++.+ ++...... ..+. ...+. ...| .++|++++ .+.+|.+.++|+.++. .+..+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 88899998888876 44322211 1111 11221 1244 46776655 4558999999997654 332221 0
Q ss_pred -----CCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-C
Q 016187 277 -----HTDSIECIGFSRSSPWAATGSM----------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-V 339 (394)
Q Consensus 277 -----h~~~i~~v~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~ 339 (394)
.......+++++++..++.... .++|.++|+.+........-...+..++++++++ +|++.. .
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence 1123345778898887766532 3579999998877665554445678899999996 666654 5
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
++.|.++|..+++.++++..-.. -+.|.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 89999999999999999874322 245667765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-14 Score=130.62 Aligned_cols=273 Identities=14% Similarity=0.080 Sum_probs=191.8
Q ss_pred EEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CCCeEEEE
Q 016187 112 SLAFSMDGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMW 176 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d~~i~iw 176 (394)
.....|+++.++.... ++.|.+.|..+++.+.++.....+ . ++++|++++++++. .++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456799998887765 679999999999999888765555 4 99999999877765 36789999
Q ss_pred eCCccceeeeeccc-------CcCeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC
Q 016187 177 NADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 177 ~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
|..+.+.+..+.-. ......++|+|||++++.+.. ++.|.++|+.+++.+..+... +. ...+...
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-----g~-~~~~P~g 188 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----DC-YHIFPTA 188 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SE-EEEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-----Cc-ceeecCC
Confidence 99998877765421 123456899999999888764 689999999999988777531 11 1223334
Q ss_pred CCEEEEEeCCCcEEEEECCC-CcEEEEeccC----CCCEE-EEEE-CCCCCeEEEEeCCCcEEEEeCCCCCccee--cc-
Q 016187 248 STLALSGSKDGSVHMVNITT-GKVVSSLVSH----TDSIE-CIGF-SRSSPWAATGSMDQKLIIWDLQHSLPRST--CD- 317 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h----~~~i~-~v~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~- 317 (394)
.+.+++.+.||++.++++.+ ++.......+ ..++. ...| .++++++. .+.+|++.+.|+........ ..
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~ 267 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA 267 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence 45667788899999999876 5643322111 12221 1344 35665444 56689999999865432110 00
Q ss_pred ----------CCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EE
Q 016187 318 ----------HEDGVTCLMWLGTSKYVVTGCV----------DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FL 376 (394)
Q Consensus 318 ----------~~~~v~~~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l 376 (394)
.......++++++++.++.... ...|.+.|+.+++.++++.. ...++.|+|++|++ +|
T Consensus 268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLL 346 (386)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEE
T ss_pred cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEE
Confidence 1122334677898888777642 25799999999999998874 23688999999996 66
Q ss_pred EEE-eCCCcEEEEeccCCC
Q 016187 377 VSV-SLDGTARVFEIADFK 394 (394)
Q Consensus 377 ~s~-s~dg~i~iw~~~~~~ 394 (394)
++. ..++.|.++|..+.|
T Consensus 347 y~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEcCCCCeEEEEECCCCc
Confidence 554 558999999987754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=151.57 Aligned_cols=241 Identities=13% Similarity=0.088 Sum_probs=158.9
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCe-------
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST------- 172 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~------- 172 (394)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.... +...+..++|+|+ +.|+.++.+..
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344578899999999999877644 469999999998754311 1111246789999 88887776543
Q ss_pred -------EEEEeCCccce----eeeecccCcCeEEEEECCCCCeEEEEeCCC-----cEEEEcCCCC--ceEEEEcCCCC
Q 016187 173 -------VWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSG--ENIHVIRGHPY 234 (394)
Q Consensus 173 -------i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~~~~~~~~ 234 (394)
|++|++.++.. +.....+...+..+.|+|||++|+..+.++ .|.+||+.++ +....+...
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--
Confidence 88999876542 222223334578899999999988777544 7999998776 313344332
Q ss_pred cccCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 235 HTEGLTCLTISADSTLALSGSK----DGSVHMVNITTG--KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~----dg~i~i~d~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
....... ++|++..++..+. ++.|.+||+.++ +....+..+...+..+.++ ++.++++...|+..+||.+.
T Consensus 316 -~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 316 -LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp -SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred -CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2223333 3488888777765 345999999875 3333334445557777777 56678888889987777543
Q ss_pred --CCCcceecc-CCCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCe
Q 016187 309 --HSLPRSTCD-HEDGVTCLMWLGTSKYVVTG----CVDGKVRVWDSLSGD 352 (394)
Q Consensus 309 --~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg----~~dg~i~iwd~~~~~ 352 (394)
......... ....+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 322222222 34567888899988766532 234789999998876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-13 Score=122.31 Aligned_cols=237 Identities=11% Similarity=0.109 Sum_probs=165.6
Q ss_pred ccCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCceEEEEe----cCCCCEEEEEEcCC-CCEEEEecCCCeEE
Q 016187 107 KDSVSSLAFSMDGQLLAS-------GGLDGLVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPR-GHIVLAGSEDSTVW 174 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t-------~s~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~s~d~~i~ 174 (394)
.....+++|+++|+++++ +..++.|.+||..+++...... ++...+..++++++ ++++++.. ...|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345678999999998887 5778899999988887643222 13356889999999 76565554 44799
Q ss_pred EEeCCccceeee-ecc----cCcCeEEEEECCCCCeEEEEeCC---------------CcEEEEcCCCCceEEEEcCCCC
Q 016187 175 MWNADRAAYLNM-FSG----HGSSVTCGDFTPDGKTICTGSDD---------------ATLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 175 iw~~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~~ 234 (394)
+|+.. ++.... ... ....+.++++.++|++.++...+ +.|..||.. ++......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~---- 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---- 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE----
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc----
Confidence 99988 554332 211 12357899999999888777655 567788865 44332222
Q ss_pred cccCeEEEEEc----CCCCEE-EEEeCCCcEEEEECC-CCc-----EEEEeccCC-CCEEEEEECCCCCeEEEEeCCCcE
Q 016187 235 HTEGLTCLTIS----ADSTLA-LSGSKDGSVHMVNIT-TGK-----VVSSLVSHT-DSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 235 ~~~~i~~~~~~----~~~~~l-~~g~~dg~i~i~d~~-~~~-----~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
.......++++ |+++.+ ++...++.|.+|++. +++ ....+..+. ..+..+++++++.++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 12345778899 999655 445678999999986 454 223333343 567889999999988888888999
Q ss_pred EEEeCCCCC-cceeccCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCC
Q 016187 303 IIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKYVV-TGCVDGKVRVWDSLS 350 (394)
Q Consensus 303 ~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~iwd~~~ 350 (394)
.+||..+.. ......+...+.++++++++++|. +...++.|..|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999987433 223333446789999999999554 445568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-14 Score=124.23 Aligned_cols=244 Identities=9% Similarity=0.072 Sum_probs=169.7
Q ss_pred eccCCcEEEEEEcCCCCcEEEE-------ecCCCeEEEEEcCCCeeeEeec----CcccCEEEEEEcCC-CCEEEEEeCC
Q 016187 61 SGHSDEVYSVACSPTDATLVAT-------GGGDDKGFFWRINQGDWASEIQ----GHKDSVSSLAFSMD-GQLLASGGLD 128 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~las-------g~~d~~v~~w~~~~~~~~~~~~----~h~~~V~~v~~s~~-g~~l~t~s~d 128 (394)
...-....+++|+|+ +.++++ +..++.+.+|+..+++...... ++...+.+++++++ |+++++.. .
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 333445678999975 466666 5678899999988877643322 35677999999999 76555444 4
Q ss_pred CcEEEEeCCCCceEEE-Eec----CCCCEEEEEEcCCCCEEEEecCC---------------CeEEEEeCCccceeeeec
Q 016187 129 GLVQIWDPSSGNLKCT-LEG----PGGGVEWVSWHPRGHIVLAGSED---------------STVWMWNADRAAYLNMFS 188 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~s~d---------------~~i~iw~~~~~~~~~~~~ 188 (394)
..|.+||.. ++.... ... +...+..+++.++++++++...+ +.|..|+.. ++... +.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence 479999988 765433 221 12347889999999988877655 567777765 44332 22
Q ss_pred ccCcCeEEEEEC----CCCCeEEE-EeCCCcEEEEcCC-CCceE--EEEcCCCCcc-cCeEEEEEcCCCCEEEEEeCCCc
Q 016187 189 GHGSSVTCGDFT----PDGKTICT-GSDDATLRVWNPK-SGENI--HVIRGHPYHT-EGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 189 ~h~~~v~~~~~~----~~~~~l~s-~~~dg~i~vwd~~-~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
.+......++|+ |+++.|+. ...++.|.+||+. +++.. ..+...+.+. .....++++++|.++++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 333456788999 99976554 4567899999976 34311 1111111122 34678999999999888888899
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCC
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQH 309 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd~~~ 309 (394)
|.+||..+++.+..+..+...+.+++++|++.+| ++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999998777666666666789999999999844 5555668899999764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-14 Score=130.14 Aligned_cols=275 Identities=12% Similarity=0.093 Sum_probs=189.6
Q ss_pred CcEEEEecCC----CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceE
Q 016187 77 ATLVATGGGD----DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLK 142 (394)
Q Consensus 77 ~~~lasg~~d----~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd~~~~~~~ 142 (394)
.++.++...+ +.|.+.|..+.+.+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 3444444433 79999999999999888755555 799999999888776 3678999999999988
Q ss_pred EEEecC-------CCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeeeecccCcCeEEEEECCCC-CeEEEEeCC
Q 016187 143 CTLEGP-------GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDD 212 (394)
Q Consensus 143 ~~~~~~-------~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 212 (394)
..+.-. ......+.|+|++++++++.. ++.|.+.|+.+.+.+..+.-... ....|++ +.+++.+.|
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRD 238 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETT
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCC
Confidence 776532 123456899999999888764 57899999999888777653221 2334433 455666778
Q ss_pred CcEEEEcCCCCceEEEEc-CCCCcccCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEecc----------CC
Q 016187 213 ATLRVWNPKSGENIHVIR-GHPYHTEGL-TCLTISADSTLALSGSKDGSVHMVNITTGKVV--SSLVS----------HT 278 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~-~~~~~~~~i-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~----------h~ 278 (394)
|++.+.+..+++...... .......++ ..+.+.+++..++..+..+.+.+.|+...... ..+.. ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 887777775554332211 000011111 12457888887777778899999998765422 11110 01
Q ss_pred CCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEE
Q 016187 279 DSIECIGFSRSSPWAATGSM----------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVW 346 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iw 346 (394)
.....++++|++..++.... ++.|.++|+.+........-......++|+|+++ ++++.. .++.|.++
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 11223689999887665532 3579999998876655443334577899999999 888888 59999999
Q ss_pred ECCCCeEEEEe
Q 016187 347 DSLSGDCVRTF 357 (394)
Q Consensus 347 d~~~~~~~~~~ 357 (394)
|+.+++.++++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999999987
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-15 Score=146.40 Aligned_cols=272 Identities=14% Similarity=0.068 Sum_probs=178.4
Q ss_pred cCCCCEEEEEeCCCc---EEEEe--CC---CCceEEEEe------cCCCCEEEEEEcCCCCEEEEecCC-----CeEEEE
Q 016187 116 SMDGQLLASGGLDGL---VQIWD--PS---SGNLKCTLE------GPGGGVEWVSWHPRGHIVLAGSED-----STVWMW 176 (394)
Q Consensus 116 s~~g~~l~t~s~d~~---i~vwd--~~---~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~d-----~~i~iw 176 (394)
+|+|++++-...++. -.+|- .. .++....+. ++...+..++|+|+|++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 488988876654432 44554 33 343332221 122257789999999988776543 469999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc--------------EEEEcCCCCce--EEEEcCCCCcccCeE
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT--------------LRVWNPKSGEN--IHVIRGHPYHTEGLT 240 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~--~~~~~~~~~~~~~i~ 240 (394)
|+.+++.+.. ..+...+..++|+|| +.|+.++.++. |++|++.+++. ...... ..+...+.
T Consensus 195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGH 271 (741)
T ss_dssp ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEE
T ss_pred ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEE
Confidence 9998876543 112222346789999 99988877654 88999877652 222222 12223478
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEECCCC--cEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCC
Q 016187 241 CLTISADSTLALSGSKDG-----SVHMVNITTG--KVVSSLVSHTDSIECIGFSRSSPWAATGSMD----QKLIIWDLQH 309 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d----g~i~iwd~~~ 309 (394)
.+.++|+|++++..+.++ .|++||+.++ +....+..+...+.... +|++..|+..+.+ +.|.+||+..
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 899999999888776543 8999999876 31445555555555543 4888888877654 4599999876
Q ss_pred C--Ccceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeEEEEeec-ccCceeEEEEccCCCEEE-E---Ee
Q 016187 310 S--LPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL-SGDCVRTFSG-HRDAIQAISVSAHQDFLV-S---VS 380 (394)
Q Consensus 310 ~--~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~l~-s---~s 380 (394)
. ....... +...+..+.++ ++.++++...|+..+||... +++.++.+.. +.+.|..+.++|+++.|+ + ..
T Consensus 351 ~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 351 STPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp SSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred CccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 3 2222233 33446667777 56778888899987777543 5667777765 356788999999987655 2 23
Q ss_pred CCCcEEEEeccC
Q 016187 381 LDGTARVFEIAD 392 (394)
Q Consensus 381 ~dg~i~iw~~~~ 392 (394)
..++|.+|++..
T Consensus 430 ~P~~i~~~d~~t 441 (741)
T 1yr2_A 430 QPATVLALDPAT 441 (741)
T ss_dssp EEEEEEEEETTT
T ss_pred CCCEEEEEECCC
Confidence 457899998754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-13 Score=119.48 Aligned_cols=232 Identities=12% Similarity=0.058 Sum_probs=161.9
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
+..+..-..+..|+|.++.++.+....+.|+.|+..+++.. .+. ....+.+++++++|+++++ . +..|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 33334445678899977888888888999999999877653 232 4567999999999996554 3 568999999888
Q ss_pred ceEEEEecC----CCCEEEEEEcCCCCEEEEecC-----------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCC
Q 016187 140 NLKCTLEGP----GGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 140 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~-----------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
+........ ...++.+++.|+++++++... .+.|+.++.. ++. ..+..+......++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCC
Confidence 764333221 234788999999997765422 2344444443 222 22233344567899999998
Q ss_pred eE-EEEeCCCcEEEEcC--CCCceE--EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC
Q 016187 205 TI-CTGSDDATLRVWNP--KSGENI--HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 205 ~l-~s~~~dg~i~vwd~--~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
.| ++.+.++.|.+|++ .++... ..+............++++++|++.++....+.|..||..+++.+..+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 76 45566789999986 455421 11211111223567899999999888888888999999999999988887778
Q ss_pred CEEEEEEC-CCCCeEEEEe
Q 016187 280 SIECIGFS-RSSPWAATGS 297 (394)
Q Consensus 280 ~i~~v~~~-~~~~~l~s~s 297 (394)
.+++++|. |++..|...+
T Consensus 242 ~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp BEEEEEEESGGGCEEEEEE
T ss_pred CceEEEEeCCCCCEEEEEc
Confidence 89999998 7877655444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-13 Score=125.36 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=166.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC--eEEEEeCCccceee
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWNADRAAYLN 185 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~--~i~iw~~~~~~~~~ 185 (394)
.....|+|+++|+++++...++.|++||..++........... .. ++|+|+++.|+++..++ .|++++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999999888888889999999988877655544333 33 89999999888887765 78888877654333
Q ss_pred ee----cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC--CCCcccC--eEEEEEcCC-CCEEEEEeC
Q 016187 186 MF----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG--HPYHTEG--LTCLTISAD-STLALSGSK 256 (394)
Q Consensus 186 ~~----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~--i~~~~~~~~-~~~l~~g~~ 256 (394)
.+ ......+.+++++|++..|+.+..++.|+.||+.++... .+.. ....... ...++++|+ +.++++...
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 33 224456778999995555666777899999999876532 2211 0001111 128999994 667777778
Q ss_pred CCcEEEEECCCCcEEEEeccCC---------------CCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcceeccC--
Q 016187 257 DGSVHMVNITTGKVVSSLVSHT---------------DSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRSTCDH-- 318 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~---------------~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-- 318 (394)
++.|+.|+.... +..+.++. .....+++++++.++++-. ..++|+.|++.........++
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 899999997643 22332221 3478999999999888877 889999999655443332222
Q ss_pred -------------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 319 -------------EDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 319 -------------~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
-.....+++.+++.++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 134788999999888888888888887754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-14 Score=128.97 Aligned_cols=268 Identities=15% Similarity=0.087 Sum_probs=189.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEeCCcc
Q 016187 117 MDGQLLASGGLD-----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRA 181 (394)
Q Consensus 117 ~~g~~l~t~s~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d~~i~iw~~~~~ 181 (394)
++++++++.... +.|.+.|+.+++.+.++.....+ .+.++|+++.++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567766655542 69999999999999888765555 799999999887765 3678999999998
Q ss_pred ceeeeeccc-------CcCeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEE
Q 016187 182 AYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLA 251 (394)
Q Consensus 182 ~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 251 (394)
+.+..+.-. ......++|+|||++|+.+.. +++|.+.|+.+++.+..+... .. ....|++ ..+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~-----g~--~~~~p~g~~~~ 232 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP-----DC--YHIFPASPTVF 232 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SE--EEEEEEETTEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC-----Cc--eeeccCCCcEE
Confidence 877765421 123456789999999998864 578999999999887776531 11 2233333 556
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe----ccCCCCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce----ec------
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSL----VSHTDSI-ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS----TC------ 316 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~----~~h~~~i-~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~------ 316 (394)
++.+.||++.+.++.+++..... .....++ ..+.+.+++..++..+..+++.+.|+....... ..
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 66777888888888666554321 1111221 234678888877777788999999985432110 00
Q ss_pred c---CCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-C
Q 016187 317 D---HEDGVTCLMWLGTSKYVVTGCV----------DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-L 381 (394)
Q Consensus 317 ~---~~~~v~~~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~ 381 (394)
. .......++++++++++++... .+.|.++|..+.+.++++.... ..+.++|+||++ ++++.. .
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETT
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCC
Confidence 0 0111223678999887776642 3579999999999999987433 478999999999 888877 5
Q ss_pred CCcEEEEeccCCC
Q 016187 382 DGTARVFEIADFK 394 (394)
Q Consensus 382 dg~i~iw~~~~~~ 394 (394)
++.|.++|..++|
T Consensus 392 s~~VsVID~~t~k 404 (426)
T 3c75_H 392 TQTLHIYDAATGE 404 (426)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999998765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-13 Score=124.69 Aligned_cols=238 Identities=11% Similarity=0.050 Sum_probs=169.7
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC--cEEEEcCCCCceEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIH 227 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~ 227 (394)
.....++|+++++++++...++.|+.|+..++.......... ... ++|+|+++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357889999999988888888999999998776554443322 233 89999999998888766 78889887665444
Q ss_pred EEcCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----eccCCCCE--EEEEECCC-CCeEEEEeCC
Q 016187 228 VIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS----LVSHTDSI--ECIGFSRS-SPWAATGSMD 299 (394)
Q Consensus 228 ~~~~~~~-~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~----~~~h~~~i--~~v~~~~~-~~~l~s~s~d 299 (394)
.+..... ....+.+++++|++..|+.+..++.|+.||+.++..... ...+...- ..++|+|+ +.++++....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 4411111 234567789999555555577789999999987763322 12222222 38999995 5566666778
Q ss_pred CcEEEEeCCCCCcceeccC---------------CCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecc---
Q 016187 300 QKLIIWDLQHSLPRSTCDH---------------EDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGH--- 360 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h--- 360 (394)
++|+.|+.... .....++ -.....+++.++++++++-+ .++.|+.|+..+++. ..+.++
T Consensus 289 ~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~ 366 (409)
T 3hrp_A 289 SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDV 366 (409)
T ss_dssp TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTC
T ss_pred CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCC
Confidence 89999987643 1122221 13478899999999888877 899999999877764 455554
Q ss_pred ------------cCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 361 ------------RDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 361 ------------~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
-.....|++++++.++++-..+++|+.+.++
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 1347899999999999999999999988763
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-13 Score=133.34 Aligned_cols=296 Identities=14% Similarity=0.126 Sum_probs=197.0
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc-----------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD-----------SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.++-+|..+++.+-.+..... ....+++ ++..++.++.|+.|..+|..+|+.+-.+...
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 33455678888899988887755543211 0122333 4668888999999999999999988777644
Q ss_pred -C----CCEEEEEEcCCCCEEEEecC------CCeEEEEeCCccceeeeecccC--------------------------
Q 016187 149 -G----GGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHG-------------------------- 191 (394)
Q Consensus 149 -~----~~v~~~~~~~~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~h~-------------------------- 191 (394)
. ..+...-.- .+..++.++. ++.|+.+|..+++.+-.+....
T Consensus 158 ~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~ 236 (677)
T 1kb0_A 158 EGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWW 236 (677)
T ss_dssp TTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHH
T ss_pred cCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCcee
Confidence 1 111110001 1334555443 7899999999888765443211
Q ss_pred ------cCeEEEEECCCCCeEEEEeCCC-------------------cEEEEcCCCCceEEEEcCCCCc------ccCeE
Q 016187 192 ------SSVTCGDFTPDGKTICTGSDDA-------------------TLRVWNPKSGENIHVIRGHPYH------TEGLT 240 (394)
Q Consensus 192 ------~~v~~~~~~~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~------~~~i~ 240 (394)
.....+++.|++.+++.++.++ +|..+|..+|+.+..+...+.. .....
T Consensus 237 ~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~ 316 (677)
T 1kb0_A 237 EAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMI 316 (677)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCE
T ss_pred EeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcE
Confidence 1113467888888888887664 5999999999987665532110 11233
Q ss_pred EEEEcCCC---CEEEEEeCCCcEEEEECCCCcEEEEeccCC-----------CCE------------------------E
Q 016187 241 CLTISADS---TLALSGSKDGSVHMVNITTGKVVSSLVSHT-----------DSI------------------------E 282 (394)
Q Consensus 241 ~~~~~~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-----------~~i------------------------~ 282 (394)
.+....+| ..++.++.+|.++++|..+|+++..+.... .++ .
T Consensus 317 l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~ 396 (677)
T 1kb0_A 317 LADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH 396 (677)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS
T ss_pred EEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCC
Confidence 33444467 688999999999999999999886654211 011 1
Q ss_pred EEEECCCCCeEEEEeC-------------------------------------------CCcEEEEeCCCCCcceeccCC
Q 016187 283 CIGFSRSSPWAATGSM-------------------------------------------DQKLIIWDLQHSLPRSTCDHE 319 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~ 319 (394)
.++++|+..++++... .|.|..||+.+........+.
T Consensus 397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 476 (677)
T 1kb0_A 397 PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV 476 (677)
T ss_dssp CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES
T ss_pred CceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC
Confidence 4678888887776543 277999999887766655555
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEE
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVS 378 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s 378 (394)
..+....+...+..++.|+.||.+++||..+|+.+.++.... ..-.-+.+..+|+.++.
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 444444556678889999999999999999999999987433 22345667788865443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=135.54 Aligned_cols=298 Identities=15% Similarity=0.192 Sum_probs=194.4
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCccc----------CE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD----------SV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~----------~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 147 (394)
.+..++.++.++-+|..+++.+-.+..+.. .+ ..+++ .+..++.++.|+.|..+|..+|+.+-.+..
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 344456688899999999987766543221 01 11222 356888899999999999999998876654
Q ss_pred C-C-CCEEEEEEcC---CCCEEEEec------CCCeEEEEeCCccceeeeecc---------------------------
Q 016187 148 P-G-GGVEWVSWHP---RGHIVLAGS------EDSTVWMWNADRAAYLNMFSG--------------------------- 189 (394)
Q Consensus 148 ~-~-~~v~~~~~~~---~~~~l~~~s------~d~~i~iw~~~~~~~~~~~~~--------------------------- 189 (394)
. . .....+...| ++. ++.++ .++.|+.||..+++.+-.+..
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~ 228 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV 228 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred cCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence 2 1 1001111112 344 44443 368999999999887644321
Q ss_pred ----cCcCeEEEEECCCCCeEEEEeCCCc-------------------EEEEcCCCCceEEEEcCCCC------cccCeE
Q 016187 190 ----HGSSVTCGDFTPDGKTICTGSDDAT-------------------LRVWNPKSGENIHVIRGHPY------HTEGLT 240 (394)
Q Consensus 190 ----h~~~v~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~------~~~~i~ 240 (394)
+......+++.|++.+++.++.++. |..||..+|+.+-.+...+. ......
T Consensus 229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~ 308 (689)
T 1yiq_A 229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMI 308 (689)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcE
Confidence 1111124678888889999888764 99999999998776653211 111222
Q ss_pred EEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEeccCC-CC------------------------------------
Q 016187 241 CLTISADST---LALSGSKDGSVHMVNITTGKVVSSLVSHT-DS------------------------------------ 280 (394)
Q Consensus 241 ~~~~~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~------------------------------------ 280 (394)
......+|+ .++.++.+|.++++|..+|+++....... ..
T Consensus 309 l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 309 LAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred EEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence 233333554 78889999999999999999874432110 00
Q ss_pred --EEEEEECCCCCeEEEEeC---------------------------------------------CCcEEEEeCCCCCcc
Q 016187 281 --IECIGFSRSSPWAATGSM---------------------------------------------DQKLIIWDLQHSLPR 313 (394)
Q Consensus 281 --i~~v~~~~~~~~l~s~s~---------------------------------------------dg~i~iwd~~~~~~~ 313 (394)
-..++++|+..++++... +|.|..||+.+....
T Consensus 389 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~ 468 (689)
T 1yiq_A 389 HDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA 468 (689)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE
T ss_pred cCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE
Confidence 012678888777766532 377999999887666
Q ss_pred eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCCE-EEEE
Q 016187 314 STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQDF-LVSV 379 (394)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~-l~s~ 379 (394)
....+...+....+...+.+|+.|+.||.++.||.++|+.+.++....+.+ .-+.|..+|+. ++..
T Consensus 469 W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 469 WEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 555444444333556678899999999999999999999999887543322 45777788874 4433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-12 Score=116.97 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=161.9
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+..+.......+|+|++..++.++..++.++.|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 34444455667888999976668888889999999997 454 3445556677999999999997776666688999998
Q ss_pred CCCceEEEEecC----CCCEEEEEEcCCCCEEEE----ecC-------------CCeEEEEeCCccceeeeecccCcCeE
Q 016187 137 SSGNLKCTLEGP----GGGVEWVSWHPRGHIVLA----GSE-------------DSTVWMWNADRAAYLNMFSGHGSSVT 195 (394)
Q Consensus 137 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~s~-------------d~~i~iw~~~~~~~~~~~~~h~~~v~ 195 (394)
. ++........ ...++.+++.|+|+++++ |.. .+.|+.|+..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 6543222111 124567999999998886 432 256788887666544333 334567
Q ss_pred EEEECCCCCeEEEEeCC------CcEEEEcCCCCceEE---EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 196 CGDFTPDGKTICTGSDD------ATLRVWNPKSGENIH---VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
.++|+|+++.|+.+... +.|.+|++..+. +. .+.. ........+.++++|++.++. .+ .|.+|+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~- 265 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS- 265 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEEECC-SS-EEEEECT-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEEEec-CC-cEEEECC-
Confidence 89999999988777665 689999986543 21 1111 112234467889999955544 44 4999998
Q ss_pred CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 267 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
.++.+..+..+. .+.+++|++++..|..++.++..+
T Consensus 266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 577777766554 588899999988887777664333
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=124.89 Aligned_cols=260 Identities=12% Similarity=0.065 Sum_probs=171.3
Q ss_pred cCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEEe-------cCCCCEEEEEEcCCCCEEEEecC-----CCeE
Q 016187 108 DSVSSLAFSMDGQLLASGG--LDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSE-----DSTV 173 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s--~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~-----d~~i 173 (394)
..+..++++|+|+++++.. .++.++||.+.+++.. .+. .+...+..+++.++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999998864 2343555555455432 221 23357899999999887666543 5789
Q ss_pred EEEeCCccceeeeecc------cCcCeEEEEECCCCCeE-EEEe---CCCcEEEEcCCCCceEEEEcCCCCc-ccCeEEE
Q 016187 174 WMWNADRAAYLNMFSG------HGSSVTCGDFTPDGKTI-CTGS---DDATLRVWNPKSGENIHVIRGHPYH-TEGLTCL 242 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l-~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~-~~~i~~~ 242 (394)
.+||+.+++.++.+.. +...+..+++++++..+ ++-. .++.|.+||+.+++....+..++.. ..+ .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~---~ 172 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED---I 172 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS---C
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc---c
Confidence 9999988876655432 22346789999865444 5554 6789999999888766555432111 111 2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-cEEEEeCC---CCC-c-----
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ-KLIIWDLQ---HSL-P----- 312 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg-~i~iwd~~---~~~-~----- 312 (394)
.+.+++..+.+.+.++.++.|. ..++.++++|++.+|+.+..++ ++..++.. ... .
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp CCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred ceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 2344666666677777775553 2457899999999888887766 44444421 100 0
Q ss_pred --ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 313 --RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 313 --~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
....++......+++.+++.++++...++.|.+||..+++....... +.....+++|.+++.++++.+..+.+
T Consensus 239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 01112233455688999999999999999999999866764433332 24457899999999988887755433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-12 Score=112.75 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=154.7
Q ss_pred CCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 150 GGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 150 ~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
.-.....|+|++ .++++....+.|+.|+..+++.. .+ .....+.+++++|+|+++++ . +..|.+||..+++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 345678899964 56677778899999999876542 22 24567889999999995554 3 56799999987764332
Q ss_pred EcCCC-CcccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE-EE
Q 016187 229 IRGHP-YHTEGLTCLTISADSTLALSGSK-----------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA-AT 295 (394)
Q Consensus 229 ~~~~~-~~~~~i~~~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s 295 (394)
..... .....+..+.++|+|+++++... .+.|..++.. ++.. .+..+....+.++|+|+++.| ++
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCEEEEe
Confidence 22111 11234788999999997776532 2344444443 3332 233334557889999999866 45
Q ss_pred EeCCCcEEEEeCC--CCCcc---eec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEE
Q 016187 296 GSMDQKLIIWDLQ--HSLPR---STC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367 (394)
Q Consensus 296 ~s~dg~i~iwd~~--~~~~~---~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 367 (394)
.+.+++|.+|++. ..... ... .+......+++.+++++.++....+.|.+||..+++.+..+..+...++++
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~ 246 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC 246 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence 5667899999873 32211 111 123457788999999888888888899999999999999998877789999
Q ss_pred EEc-cCCCEEEEE
Q 016187 368 SVS-AHQDFLVSV 379 (394)
Q Consensus 368 ~~~-~~~~~l~s~ 379 (394)
+|. |+++.|..+
T Consensus 247 ~f~g~d~~~L~vt 259 (297)
T 3g4e_A 247 CFGGKNYSEMYVT 259 (297)
T ss_dssp EEESGGGCEEEEE
T ss_pred EEeCCCCCEEEEE
Confidence 998 887755433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-12 Score=112.31 Aligned_cols=225 Identities=15% Similarity=0.068 Sum_probs=156.0
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
.-..+.+|+|+++.++.+...++.+..|+..+++... +. +...+.+++|+|+|+++++. .+ .|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 3456788999777888888888999999998876533 32 34679999999999877754 44 499999988876433
Q ss_pred EecC----CCCEEEEEEcCCCCEEEEecC------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE-EeCCC
Q 016187 145 LEGP----GGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDA 213 (394)
Q Consensus 145 ~~~~----~~~v~~~~~~~~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg 213 (394)
.... ...+..++++|+++++++... .+.|+.++ +++.. .+..+......++|+|+++.|+. .+.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 2211 135788999999997765542 24566666 34332 22233345678999999987654 45578
Q ss_pred cEEEEcCC--CC-ce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC-
Q 016187 214 TLRVWNPK--SG-EN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS- 287 (394)
Q Consensus 214 ~i~vwd~~--~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~- 287 (394)
.|.+||+. ++ +. ...+............+.++++|.++++...++.|..|+. +++.+..+..+...+.+++|+
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEec
Confidence 99999975 55 21 1112111111234567899999998888777889999998 677777777677789999998
Q ss_pred CCCCeEEEEe
Q 016187 288 RSSPWAATGS 297 (394)
Q Consensus 288 ~~~~~l~s~s 297 (394)
+++..|+.++
T Consensus 281 ~d~~~L~vt~ 290 (326)
T 2ghs_A 281 PDASRLLVTS 290 (326)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEe
Confidence 8877665443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-14 Score=127.22 Aligned_cols=174 Identities=12% Similarity=0.023 Sum_probs=131.9
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---------eeE-eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---------~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.++.|+++|.. .++++|+.+ .+++|++...+ +.. ....+.. |+.|+| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58889999964 567777776 55569864332 111 1223556 999999 99999999 889999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
+.+.........+..++..+.+.+.. +++++.||.+.+|++.++.... +...|+|++|+|+| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 98776655666677778888777653 8888999999999998776543 45689999999999 7889999999
Q ss_pred EEEcCCCCce--EEEEcCC------CCcccCeEEEEEcCCCCEEEE
Q 016187 216 RVWNPKSGEN--IHVIRGH------PYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 216 ~vwd~~~~~~--~~~~~~~------~~~~~~i~~~~~~~~~~~l~~ 253 (394)
++|++..++. ...+... ..+...+.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999877664 4455211 124466999999999988876
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-11 Score=111.43 Aligned_cols=298 Identities=12% Similarity=0.071 Sum_probs=189.3
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCc---------ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h---------~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~ 149 (394)
.+..++.++.+..+|..+++.+-..... ...+.+. ...++..++.++.++.|..+|..+|+.+.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 3445667889999999888876544332 1223222 22245677888899999999999999876665432
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCe-----EEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV-----TCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
........ .+..++.++.++.+..+|..+++.+-.+....... ..... .+..++.++.++.|..+|..+++
T Consensus 134 ~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 134 EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCC
T ss_pred ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCc
Confidence 21111111 14477788899999999998887665544322110 11111 24578888889999999999998
Q ss_pred eEEEEcCCCCc-c---cCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 225 NIHVIRGHPYH-T---EGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 225 ~~~~~~~~~~~-~---~~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+......... . ..+..+...| .+..++.++.++.+..+|..+++.+-.... .....+... +..+..++.
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~ 285 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQ 285 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEET
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcC
Confidence 76655421100 0 0000000111 246677788899999999999988765542 233444443 556777888
Q ss_pred CCcEEEEeCCCCCcceecc-C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE-EEEccCCCE
Q 016187 299 DQKLIIWDLQHSLPRSTCD-H-EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA-ISVSAHQDF 375 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~ 375 (394)
++.+..+|..+........ . ...+..... .+..|+.++.+|.|+++|..+++.+..+......+.. ... .+..
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~ 361 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGK 361 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCE
Confidence 9999999998765544332 1 111222222 2468888999999999999999998877754444432 222 2457
Q ss_pred EEEEeCCCcEEEEe
Q 016187 376 LVSVSLDGTARVFE 389 (394)
Q Consensus 376 l~s~s~dg~i~iw~ 389 (394)
|+.++.+|.|..|+
T Consensus 362 l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 362 LLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEBTTSCEEEEE
T ss_pred EEEEeCCCEEEEEe
Confidence 77899999999886
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-12 Score=114.23 Aligned_cols=234 Identities=10% Similarity=0.057 Sum_probs=159.0
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 144 TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
.+...........|+|+++ ++++...++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3343445567889999998 66777788999999884 33 34444566678899999999977766667889999985
Q ss_pred CceEEEEcCCC-CcccCeEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 223 GENIHVIRGHP-YHTEGLTCLTISADSTLALS----GSK-------------DGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 223 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
++......... .....+..++++|+|+++++ |.. .+.|..+|..+++..... .....+.+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 54322211110 11124567899999998886 332 356888888766543322 34567889
Q ss_pred EECCCCCeEEEEeCC------CcEEEEeCCCCCcc---eec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 285 GFSRSSPWAATGSMD------QKLIIWDLQHSLPR---STC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 285 ~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
+|+|++..|+.+... +.|.+|++...... ... ........+++.+++++.++ +.+ .|.+|+. .++.+
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLL 270 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEE
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEE
Confidence 999999988777665 68999987643211 010 11223446788899985544 444 4999997 67788
Q ss_pred EEeecccCceeEEEEccCCCEEEEEeCCCcEE
Q 016187 355 RTFSGHRDAIQAISVSAHQDFLVSVSLDGTAR 386 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 386 (394)
..+..+. .+..++|+++++.|..++.++..+
T Consensus 271 ~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 8777655 588999999998888887765443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=120.37 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=189.3
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
+..++.++.+..|| .+++.......+...+.++...++|.+++ ++.+ |..+|. +++....+.............
T Consensus 33 l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~- 106 (330)
T 3hxj_A 33 IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF- 106 (330)
T ss_dssp EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE-
T ss_pred EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE-
Confidence 34456778888999 78887666655556678888888876544 4444 888886 565432222222112222222
Q ss_pred CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCe
Q 016187 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239 (394)
Q Consensus 160 ~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i 239 (394)
+..+..++.++.+..++.. ++.......+...+.++...+++. |+.++.++.|..+|.. ++........ ...+
T Consensus 107 -~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~---~~~~ 179 (330)
T 3hxj_A 107 -EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN---DAIT 179 (330)
T ss_dssp -TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS---SCCC
T ss_pred -CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC---CCce
Confidence 4567778888999999988 655544444444455556666665 6667788999999998 7665554421 2335
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCC
Q 016187 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE 319 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 319 (394)
.++...+++.+++ ++ +.|..+| .+++.+.........+.++...+++.+ ..++.++.+..++.............
T Consensus 180 ~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 180 SAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDGTEKWRFKTGK 254 (330)
T ss_dssp SCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTSCEEEEEECSS
T ss_pred eeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCCCEeEEeeCCC
Confidence 5566777777555 44 8899999 777777666655667888888888754 44666778888875433222211122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+..+...++ ..|..++.+|.|..+|. +++.+..+......+.++...+++.++ .++.+|.+++...+
T Consensus 255 ~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 255 RIESSPVIGNT-DTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNL 323 (330)
T ss_dssp CCCSCCEECTT-SCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC-
T ss_pred CccccceEcCC-CeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEecc
Confidence 22233444434 46777888989999996 788777776656677888887777654 58899999988754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=123.81 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=134.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+++.+++++...++++|+.++ +++|++...+ ...... ... |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999884 6679854332 112233 445 999999 88899888 889999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.+++... +...++|++|+|+| ++.|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcC
Confidence 9876655556677778888777654 38999999999999999877543 23479999999999 6789999
Q ss_pred CcEEEEECCCCcE--EEEe------c---cCCCCEEEEEECCCCCeEEE
Q 016187 258 GSVHMVNITTGKV--VSSL------V---SHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 258 g~i~i~d~~~~~~--~~~~------~---~h~~~i~~v~~~~~~~~l~s 295 (394)
|++++|+...+.. ..++ . +|...|.+|.|.++..++++
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999999877765 4555 2 36788999999999998876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=118.94 Aligned_cols=269 Identities=10% Similarity=0.037 Sum_probs=176.7
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEEecCC-------C
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGPG-------G 150 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd~~~~~~~~~~~~~~-------~ 150 (394)
++.+.|..+++.+.++..-..+ .+.|+|||++++++. .++.|.+||+.+++...++..+. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988755556 799999999888886 36889999999999998876431 2
Q ss_pred CEEEEEEcCCCCEEEEecC--CCeEEE--EeCCccceeeeecccCcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCC---
Q 016187 151 GVEWVSWHPRGHIVLAGSE--DSTVWM--WNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKS--- 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~--d~~i~i--w~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~--- 222 (394)
....++++|++++++++.. +..+.+ +|..+ +..+..-. |..+.|+++ .+++.+.|+.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 3456899999998888764 467888 88876 23332111 112234443 445566788887788765
Q ss_pred --CceEEEE-cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccC----------CCCEEEEEEC
Q 016187 223 --GENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSH----------TDSIECIGFS 287 (394)
Q Consensus 223 --~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h----------~~~i~~v~~~ 287 (394)
++..... ........+. . .+++..++..+. +.+.+.|+.+. +.+..+... ......++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 2211000 0011112222 3 555555555555 99999998654 233322111 0111226899
Q ss_pred CCCCeEEEEeC---------CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCE-EEEEe-CCCeEEEEECCCCeEEEE
Q 016187 288 RSSPWAATGSM---------DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY-VVTGC-VDGKVRVWDSLSGDCVRT 356 (394)
Q Consensus 288 ~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~-~dg~i~iwd~~~~~~~~~ 356 (394)
|++..++.+.. ++.+.++|+.+........-......++++|++++ +++.. .++.|.++|+.+++.+++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 99987776532 23566999988765544433335788999999985 55555 599999999999999999
Q ss_pred eecccCceeEEEEcc
Q 016187 357 FSGHRDAIQAISVSA 371 (394)
Q Consensus 357 ~~~h~~~v~~l~~~~ 371 (394)
+.....+ +.+++.+
T Consensus 353 I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 353 VELDKGP-ESLSVQN 366 (368)
T ss_dssp CCCCSCC-CEEECCC
T ss_pred EECCCCC-CEEEeec
Confidence 9865543 5666654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-13 Score=120.04 Aligned_cols=264 Identities=9% Similarity=0.004 Sum_probs=174.5
Q ss_pred CcEEEEEEcCCCCcEEEEec--CCCeEEEEEcCCCeeeE------eecCcccCEEEEEEcCCCCEEEEEeC-----CCcE
Q 016187 65 DEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWAS------EIQGHKDSVSSLAFSMDGQLLASGGL-----DGLV 131 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~--~d~~v~~w~~~~~~~~~------~~~~h~~~V~~v~~s~~g~~l~t~s~-----d~~i 131 (394)
.....|+++|+ ++++++.. .++.++||.+.+++... ...+|...+.+++++++|+++++-.. +..|
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999995 56777743 23335677665555331 11235678999999999987665544 5789
Q ss_pred EEEeCCCCceEEEEecC------CCCEEEEEEcCCC-CEEEEec---CCCeEEEEeCCccceeeeecccCcCeE-EEEEC
Q 016187 132 QIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-HIVLAGS---EDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFT 200 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~s---~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~ 200 (394)
.+||+.+++.+..+..+ ...+..+++.+++ ..+++-+ .++.|.+|+..+++..+.+.+|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877666532 2346789999864 4556655 678999999988877776655432110 13445
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECC---CCc-----EE
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNIT---TGK-----VV 271 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~---~~~-----~~ 271 (394)
++|..+.+.+.++.++.|.. .+..++++|+++.++.+...+ .|..++.. .+. ..
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~-----------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHL-----------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp ETTEECBEECTTSCEECCCC-----------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred ECCEEEEeccCCCceeceec-----------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 57777777778888766631 356789999999888776665 55555431 111 00
Q ss_pred E--EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 272 S--SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 272 ~--~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
. ...++......+++++++.++++...++.|.+||........... ....+.++++.+++.++++.+..+.+.+|
T Consensus 239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 0 111233456678999999999999899999999983332222221 23457889999988887777655555444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=130.16 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=157.1
Q ss_pred cCcccCEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCceEEE-EecCCCCEEEEEEcCCCCEEEEecCCC------
Q 016187 104 QGHKDSVSSLAFSMDGQLLASG-----GLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDS------ 171 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~-----s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d~------ 171 (394)
.+|...+..++|||||++||-+ +....|++||+.+|+.+.. +... ....++|+ +++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence 3466679999999999988833 2335799999999986532 2211 12357899 999888877763
Q ss_pred -------eEEEEeCCccce----eeeecc-cCcCeEEEEECCCCCeEEEEeC----CCcEEEEcCCCCc-eEEEEcCCCC
Q 016187 172 -------TVWMWNADRAAY----LNMFSG-HGSSVTCGDFTPDGKTICTGSD----DATLRVWNPKSGE-NIHVIRGHPY 234 (394)
Q Consensus 172 -------~i~iw~~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~~~~~~ 234 (394)
.|++|++.+... +..... |...+..+.|+|||++|+.... ...|.++|+.++. ....+...
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-- 279 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-- 279 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS--
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC--
Confidence 499999876542 222333 4455778899999998854332 3589999987763 33344332
Q ss_pred cccCeEEEEEcCCCCEE-EEEeCC---CcEEEEECCCCcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEE
Q 016187 235 HTEGLTCLTISADSTLA-LSGSKD---GSVHMVNITTGKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQ---KLIIW 305 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l-~~g~~d---g~i~i~d~~~~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg---~i~iw 305 (394)
....... +++++..+ +....+ +.|..+++.++.. ...+..|...+. .|++++.+|+....++ .|++|
T Consensus 280 -~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 280 -LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp -SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred -CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 2233333 55555544 444443 6799999987643 345556666654 8889888877665544 68899
Q ss_pred eCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCeE
Q 016187 306 DLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVD----GKVRVWDSLSGDC 353 (394)
Q Consensus 306 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~ 353 (394)
++........ ......+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9875433322 2233346666777788776655544 8899999887753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=118.26 Aligned_cols=247 Identities=10% Similarity=-0.020 Sum_probs=168.4
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEeCCccceeeeeccc-------Cc
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRAAYLNMFSGH-------GS 192 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d~~i~iw~~~~~~~~~~~~~h-------~~ 192 (394)
+|.+.|..+++.+.++.....+ .+.++|+++.++++. .++.|.+||..+.+.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999988766666 699999999887775 3688999999999988877543 12
Q ss_pred CeEEEEECCCCCeEEEEeC--CCcEEE--EcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 016187 193 SVTCGDFTPDGKTICTGSD--DATLRV--WNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 193 ~v~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~ 267 (394)
....++|+|||++++.+.. +..|.+ +|+.+ +..+... +. ..+.|++ ..+++.+.|+++.+.++.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----SC--FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----SC--CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----Cc--eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 3457899999999998864 467888 99876 3444311 01 1122333 3455667788888888876
Q ss_pred -----CcEEEE----eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--ecc-----------CCCCEEEE
Q 016187 268 -----GKVVSS----LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCD-----------HEDGVTCL 325 (394)
Q Consensus 268 -----~~~~~~----~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~~~~v~~~ 325 (394)
++.... +.....+. . .+++..++..+. +.+.+.|+....... ... .......+
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 432211 11122333 3 555555555556 899999985421110 000 11112226
Q ss_pred EEeCCCCEEEEEeC-C--------CeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-CCCcEEEEeccCCC
Q 016187 326 MWLGTSKYVVTGCV-D--------GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-LDGTARVFEIADFK 394 (394)
Q Consensus 326 ~~~~~~~~l~sg~~-d--------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iw~~~~~~ 394 (394)
++++++++++.+.. . +.+.++|+.+.+.++++.... ....|+|++|++ ++++.. .+++|.++|+.++|
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 79999988886543 2 356699999999999887544 578999999997 566666 59999999998764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-10 Score=104.20 Aligned_cols=220 Identities=10% Similarity=0.014 Sum_probs=147.9
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 110 VSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 110 V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
..+..|+|++. ++++...++.|.+||..+++.. .+. ....+.+++|.|+++++++. ...|.+|+..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEee
Confidence 45788999754 5566667889999999887653 233 24578999999999877764 3459999987766433221
Q ss_pred c---c-CcCeEEEEECCCCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE-EEeCC
Q 016187 189 G---H-GSSVTCGDFTPDGKTICTGSD------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKD 257 (394)
Q Consensus 189 ~---h-~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~g~~d 257 (394)
. . ...+..++++|+|+++++... .+.|..++ +++. ..+.. .......++++|+++.++ +.+.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~---~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFA---DISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEE---EESSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeC---CCcccCCeEEcCCCCEEEEEECCC
Confidence 1 1 235788999999997665542 24555555 4443 22211 123467889999998664 44567
Q ss_pred CcEEEEECC--CC-c-----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe-
Q 016187 258 GSVHMVNIT--TG-K-----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL- 328 (394)
Q Consensus 258 g~i~i~d~~--~~-~-----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~- 328 (394)
+.|.+|++. ++ + .+..+......+..+.+++++.+.++...++.|..|+...........+...+++++|.
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEES
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEec
Confidence 899999985 55 2 23333334456788999999988777767789999998543333333344568999998
Q ss_pred CCCCEEEEEeC
Q 016187 329 GTSKYVVTGCV 339 (394)
Q Consensus 329 ~~~~~l~sg~~ 339 (394)
++++.|+.++.
T Consensus 281 ~d~~~L~vt~~ 291 (326)
T 2ghs_A 281 PDASRLLVTSA 291 (326)
T ss_dssp TTSCEEEEEEB
T ss_pred CCCCEEEEEec
Confidence 88777655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=122.96 Aligned_cols=238 Identities=9% Similarity=0.061 Sum_probs=156.1
Q ss_pred ccCCcEEEEEEcCCCCcEEE-----EecCCCeEEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCCCc----
Q 016187 62 GHSDEVYSVACSPTDATLVA-----TGGGDDKGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLDGL---- 130 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~la-----sg~~d~~v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d~~---- 130 (394)
+|...+..++|||++ ++|| +|+...++++||+.+++.+.. +...+ ..++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 456678899999965 4555 234447899999999986543 22223 578999 9999998887743
Q ss_pred ---------EEEEeCCCCce--EEEEec---CCCCEEEEEEcCCCCEEEEec----CCCeEEEEeCCccc-eeeeecccC
Q 016187 131 ---------VQIWDPSSGNL--KCTLEG---PGGGVEWVSWHPRGHIVLAGS----EDSTVWMWNADRAA-YLNMFSGHG 191 (394)
Q Consensus 131 ---------i~vwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~s----~d~~i~iw~~~~~~-~~~~~~~h~ 191 (394)
|++|++.++.. ...+.. +...+..+.|+|++++|+... ..+.++++++.++. ....+..+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999887653 233332 234567899999999775433 23589999987653 334455555
Q ss_pred cCeEEEEECCCCCeEE-EEeCC---CcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEE
Q 016187 192 SSVTCGDFTPDGKTIC-TGSDD---ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHM 262 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~-s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg---~i~i 262 (394)
...... ++++|..|+ .+..+ +.|..+|+.++.. ...+..+ ...+. .+++++..|+....++ .|++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 544443 666666554 44333 6799999987653 2333332 22233 7888888777665443 6899
Q ss_pred EECCCCcEEEEec-cCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCC
Q 016187 263 VNITTGKVVSSLV-SHTDSIECIGFSRSSPWAATGSMD----QKLIIWDLQHSL 311 (394)
Q Consensus 263 ~d~~~~~~~~~~~-~h~~~i~~v~~~~~~~~l~s~s~d----g~i~iwd~~~~~ 311 (394)
|++..+. ...+. .....+..+.+++++..++....+ +++..||+.+..
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9987543 44443 344567777888888766655444 789999986653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-10 Score=114.31 Aligned_cols=299 Identities=14% Similarity=0.194 Sum_probs=186.0
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc----------CE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD----------SV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~----------~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.++-+|..+++.+-.+..... .+ ..+++ .+..++.++.|+.|..+|..+|+.+-.+...
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 146 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTT 146 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeeccC
Confidence 33445678888889888887655532211 01 11222 3567888889999999999999988766542
Q ss_pred CCC-EEEEEEcC--CCCEEEEecC------CCeEEEEeCCccceeeeeccc-----------------------------
Q 016187 149 GGG-VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGH----------------------------- 190 (394)
Q Consensus 149 ~~~-v~~~~~~~--~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~h----------------------------- 190 (394)
... ...+.-.| .+..++.+.. ++.|+.+|..+++.+-.+...
T Consensus 147 ~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~ 226 (668)
T 1kv9_A 147 DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG 226 (668)
T ss_dssp CTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHC
T ss_pred CCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeC
Confidence 110 00000011 1334444433 589999999988876544310
Q ss_pred --CcCeEEEEECCCCCeEEEEeCCC-------------------cEEEEcCCCCceEEEEcCCC--Cc----ccCeEEEE
Q 016187 191 --GSSVTCGDFTPDGKTICTGSDDA-------------------TLRVWNPKSGENIHVIRGHP--YH----TEGLTCLT 243 (394)
Q Consensus 191 --~~~v~~~~~~~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~--~~----~~~i~~~~ 243 (394)
.......++.|+..+++.++.++ .|..+|..+|+.+-.+...+ .. ..+.....
T Consensus 227 ~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d 306 (668)
T 1kv9_A 227 GGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAE 306 (668)
T ss_dssp EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEE
T ss_pred CCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEE
Confidence 11112357888888888888776 39999999999876665321 10 12233333
Q ss_pred EcCCCC---EEEEEeCCCcEEEEECCCCcEEEEeccCC------------CCE------------------------EEE
Q 016187 244 ISADST---LALSGSKDGSVHMVNITTGKVVSSLVSHT------------DSI------------------------ECI 284 (394)
Q Consensus 244 ~~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~h~------------~~i------------------------~~v 284 (394)
+..+++ .++.++.+|.++++|..+|+++....... .++ ..+
T Consensus 307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 334665 68889999999999999999885432211 000 015
Q ss_pred EECCCCCeEEEE------------------------------------eCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 285 GFSRSSPWAATG------------------------------------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 285 ~~~~~~~~l~s~------------------------------------s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
+++|+..++... ..+|.|..||+.+...................
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~ 466 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS 466 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeE
Confidence 667765554431 13478999999887665544433333333344
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-EEEEEe
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-FLVSVS 380 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~l~s~s 380 (394)
..+.+|+.|+.||.+++||..+|+.+.++....+.. .-+.+..+++ |++.++
T Consensus 467 t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 567899999999999999999999999887543222 2344555666 455443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=115.42 Aligned_cols=271 Identities=13% Similarity=0.116 Sum_probs=178.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC----------E-EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG----------V-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+..++.++.++.|..+|..+|+.+-.+...... + ..+.. .+..++.++.|+.++.+|..+++.+-.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567777888899999999999988776533210 0 01111 3457888889999999999998876544
Q ss_pred ccc--CcCeEEEEECC---CCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCc---------------------
Q 016187 188 SGH--GSSVTCGDFTP---DGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYH--------------------- 235 (394)
Q Consensus 188 ~~h--~~~v~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~--------------------- 235 (394)
... ......+..+| ++ .++.++ .+|.|+.||..+|+.+-.+...+..
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 331 11001111122 44 444443 3789999999999987665421100
Q ss_pred -------ccCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCcEEEEecc--CC-------CC
Q 016187 236 -------TEGLTCLTISADSTLALSGSKDGS-------------------VHMVNITTGKVVSSLVS--HT-------DS 280 (394)
Q Consensus 236 -------~~~i~~~~~~~~~~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~--h~-------~~ 280 (394)
......++++|+..+++.+..++. |..+|..+|+.+-.++. |. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001124678898899999888764 99999999998866543 21 12
Q ss_pred EEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCcceeccC-----------------------------CC--------
Q 016187 281 IECIGFSRSSP---WAATGSMDQKLIIWDLQHSLPRSTCDH-----------------------------ED-------- 320 (394)
Q Consensus 281 i~~v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------~~-------- 320 (394)
+.......++. .++.++.+|.+.++|..+......... ..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222222443 788899999999999877654311000 00
Q ss_pred ---CEEEEEEeCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCe
Q 016187 321 ---GVTCLMWLGTSKYVVTGCV---------------------------------------------DGKVRVWDSLSGD 352 (394)
Q Consensus 321 ---~v~~~~~~~~~~~l~sg~~---------------------------------------------dg~i~iwd~~~~~ 352 (394)
....++++|+..++++... +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 0112678888877776532 3789999999999
Q ss_pred EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 353 CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 353 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+-++..+. ++..-.+...+.+++.++.||.++.||.++-
T Consensus 467 ~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 467 AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 988877544 3444456667889999999999999998764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-13 Score=125.17 Aligned_cols=256 Identities=11% Similarity=0.050 Sum_probs=137.6
Q ss_pred CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-EEE-
Q 016187 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEW- 154 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~- 154 (394)
+.++++++.|+.++.||..+++.+-.+.. +.+.+..+..++..+++++.|+.|+.||..+|+.+..+..+... +..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 34677888999999999999998877775 56666667778888888889999999999998876555432110 000
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC
Q 016187 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 234 (394)
..+ ..+..+++++.++.++.||..+++.+..+..+.. ..++|++..+++++.|+.|+.||.++++.+..+....
T Consensus 87 p~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 87 PCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred ceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 001 1345677888899999999999987766655432 3456788899999999999999999988654433111
Q ss_pred cccCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE-EEEEECCCCCeE----EEEeCCCcEEEEe
Q 016187 235 HTEGLTCLTISADS---TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI-ECIGFSRSSPWA----ATGSMDQKLIIWD 306 (394)
Q Consensus 235 ~~~~i~~~~~~~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-~~v~~~~~~~~l----~s~s~dg~i~iwd 306 (394)
.....+.++. ..+++++.+|.|..||..+|+.+-+.... .++ ....+++++... +.+ ++.+..+|
T Consensus 161 ----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld 233 (369)
T 2hz6_A 161 ----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGLRKVMHINVA--VETLRYLT 233 (369)
T ss_dssp ----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSCEEECCEEEE--HHHHHHHH
T ss_pred ----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCceEeccceeec--ccceeeee
Confidence 1112233322 45677889999999999999987666533 344 334455555321 111 23344444
Q ss_pred CCCCC----cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 307 LQHSL----PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 307 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..+.. ..........+.. -.-.+..|+.++.+|.++.++..
T Consensus 234 ~~tG~~~~~~~W~~~~~~~~~s--p~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 234 FMSGEVGRITKWKYPFPKETEA--KSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHTSCCCCCCHHHH--HHHSEEEECBEECSSCEECCEEE
T ss_pred hhcCCcccceeeeeccCccccc--cccccceEEEecccCCEEecCcc
Confidence 32221 1111111111100 00123567778888888888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-09 Score=96.55 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=169.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCC---------CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
+..++.++.++.|..+|..+|+.+....... ..+.. .....+..++.++.++.+..+|..+++.+-....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5678888889999999999999876655421 22322 2222456777888899999999998887654443
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc--cCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT--EGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
.......... .+..++.++.++.|..+|..+++.+.......... ......... +..++++..++.|..+|..+
T Consensus 132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 3221111111 24578888899999999999998776654321100 000111122 45677788899999999999
Q ss_pred CcEEEEeccCCCC----EEE---EEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe
Q 016187 268 GKVVSSLVSHTDS----IEC---IGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 268 ~~~~~~~~~h~~~----i~~---v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
++.+-........ +.. +...| .+..+..++.++.+..+|..+......... .....+.. ++..|..++
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~ 284 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVD 284 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEE--ETTEEEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceE--ECCEEEEEc
Confidence 9887655422110 000 00111 245677788899999999987655544332 22333333 356788888
Q ss_pred CCCeEEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 339 VDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+|.|..+|..+++.+..... ....+..... .+..|+.++.+|.+..+|..+-
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 999999999999998877652 2222333333 2467888888999999987653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-11 Score=115.66 Aligned_cols=271 Identities=12% Similarity=0.092 Sum_probs=182.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-----------EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-----------VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+..|+.++.++.|.-+|..+|+.+-.+...... ...+++ .+..++.++.|+.+..+|..+++.+-.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 557777788899999999999988776543210 011222 3567888899999999999999877655
Q ss_pred ccc-C----cCeEEEEECCCCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCCcc--------------------
Q 016187 188 SGH-G----SSVTCGDFTPDGKTICTGSD------DATLRVWNPKSGENIHVIRGHPYHT-------------------- 236 (394)
Q Consensus 188 ~~h-~----~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~-------------------- 236 (394)
..+ . ..+...-.. .+..++.++. ++.|+.+|..+|+.+..+.......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 543 1 111110001 2345555543 7999999999999876665322110
Q ss_pred ---------cCeEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEecc--CC-------C
Q 016187 237 ---------EGLTCLTISADSTLALSGSKDG-------------------SVHMVNITTGKVVSSLVS--HT-------D 279 (394)
Q Consensus 237 ---------~~i~~~~~~~~~~~l~~g~~dg-------------------~i~i~d~~~~~~~~~~~~--h~-------~ 279 (394)
.....++++|++..++.+..++ +|..+|..+|+.+-.++. |. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 0112467889888888887664 599999999998766543 21 1
Q ss_pred CEEEEEECCCC---CeEEEEeCCCcEEEEeCCCCCcceeccCC-----------CC------------------------
Q 016187 280 SIECIGFSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCDHE-----------DG------------------------ 321 (394)
Q Consensus 280 ~i~~v~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~------------------------ 321 (394)
....+....++ ..++.++.+|.+.++|..+.......... ..
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 12222333356 67889999999999998776543221100 00
Q ss_pred -EEEEEEeCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCeEEEEe
Q 016187 322 -VTCLMWLGTSKYVVTGCV-------------------------------------------DGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 322 -v~~~~~~~~~~~l~sg~~-------------------------------------------dg~i~iwd~~~~~~~~~~ 357 (394)
...++++|+..++++... .|.|..||+.+++.+-++
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 014678888888877543 278999999999998877
Q ss_pred ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 358 ~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.. ..+++...+..++.+++.++.||.+++||..+-
T Consensus 474 ~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 474 EH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 63 445566667778889999999999999998764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-13 Score=122.97 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=136.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCc-CeEE
Q 016187 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTC 196 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~-~v~~ 196 (394)
++.++++++.|+.|+.||..+|+.+..+.. +.+.+..+.+++.++++++.|+.++.||..+++.+..+..+.. .+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999887765 4455555566777888889999999999988776555443311 1100
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
.-....+..+++++.++.|+.||..+|+.+..+..+. ...++|++..+++++.++.|+.||.++|+.+-++..
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 0001134567888889999999999998766554321 134556888899999999999999999876544322
Q ss_pred CCCCEEEEEECCCC---CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEE-EEeCCCCEE----EEEeCCCeEEEEEC
Q 016187 277 HTDSIECIGFSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-MWLGTSKYV----VTGCVDGKVRVWDS 348 (394)
Q Consensus 277 h~~~i~~v~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~l----~sg~~dg~i~iwd~ 348 (394)
+. .....+.++. ..++.++.+|.+..||..+...........++..+ .+++++... +.+ ++.++++|.
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~ 234 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVA--VETLRYLTF 234 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHH
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeec--ccceeeeeh
Confidence 11 1222333332 45777889999999999877665554444454432 223343221 112 334555665
Q ss_pred CCCe----EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 349 LSGD----CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 349 ~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.+|+ .+-++.. .+.+.. ..-.+..|+.++.||.+..++.
T Consensus 235 ~tG~~~~~~~W~~~~-~~~~~s--p~~~~g~lyv~~~~G~l~al~~ 277 (369)
T 2hz6_A 235 MSGEVGRITKWKYPF-PKETEA--KSKLTPTLYVGKYSTSLYASPS 277 (369)
T ss_dssp HHHHHHHHHTSCCCC-CCHHHH--HHHSEEEECBEECSSCEECCEE
T ss_pred hcCCcccceeeeecc-Cccccc--cccccceEEEecccCCEEecCc
Confidence 5555 3322221 011110 0012345566666776666553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-07 Score=93.79 Aligned_cols=314 Identities=11% Similarity=0.139 Sum_probs=202.1
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-------h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...|.++...+. +.+.+. ..++.+..|+..++++...... ....|.++...++|.+.+ |+.+ -|.+|+.
T Consensus 214 ~~~i~~i~~d~~-g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSP-TRIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEET-TEEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcCC-CCEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 356777777664 444443 3334478899877665443221 235699999999998665 4445 5889998
Q ss_pred CCCceEEEEec-------CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec------ccCcCeEEEEECCCC
Q 016187 137 SSGNLKCTLEG-------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDG 203 (394)
Q Consensus 137 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~ 203 (394)
.+++....... ....|.++...+++.+. .|+.++-|..|+..+........ .....|.++...++|
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 87765433211 23568999888888754 56677778888876554322111 123468888888777
Q ss_pred CeEEEEeCCCcEEEEcCCCCceEEEEcCC-----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec---
Q 016187 204 KTICTGSDDATLRVWNPKSGENIHVIRGH-----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--- 275 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--- 275 (394)
+ |..|+.++-|..|+..+++........ ......|.++...+++.++..|+.++-|..+|..+++...-..
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 5 556777777999998776533221111 1223568899988888856677777789999998876443221
Q ss_pred -cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 276 -SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 276 -~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.....|.++...+++.+.+... +-+.+|+..+....... .....|.++...+++.+.+... +-|..|+
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEe
Confidence 1345799999998887655443 45888987654322211 1235688898888887666544 4588888
Q ss_pred CCCCeEEEEee-------cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 348 SLSGDCVRTFS-------GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 348 ~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+++. .+. .....|.++...+++.+.++.. .| +..|+..
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~ 570 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEK 570 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETT
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCC
Confidence 877765 332 2345689999988888766544 34 5666643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-07 Score=94.90 Aligned_cols=313 Identities=12% Similarity=0.162 Sum_probs=200.6
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
|.++...++ +.+.+ |..++.+..|+..++++.... ..+...|.++...++|.+.+ |+.++-|.+||..+++.....
T Consensus 175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQG-DQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEET-TEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCC-CCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEee
Confidence 777777664 44444 344445788888776654432 12356799999888887655 444444899998876654322
Q ss_pred ec-------CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-------ccCcCeEEEEECCCCCeEEEEeC
Q 016187 146 EG-------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-------GHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 146 ~~-------~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
.. ....|.++...+++.+.+.. .. -+.+|+..+........ .....|.++...++|. |..|+.
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~ 328 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTY 328 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEES
T ss_pred cCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEEC
Confidence 21 13568899888888765544 44 68889987665433211 1235688888888876 566777
Q ss_pred CCcEEEEcCCCCceEEEEcC----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--------CCC
Q 016187 212 DATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--------HTD 279 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--------h~~ 279 (394)
++-|..|+..++.- ..+.. .......|.++...+++.+. .|+.++-|..|+..+++...-... ...
T Consensus 329 ~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (795)
T 4a2l_A 329 FGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSN 406 (795)
T ss_dssp SSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCS
T ss_pred CCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCc
Confidence 77788998765432 22221 11223468899988888755 477777899999887764332211 235
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.|.++...+++.+|..|+.++-|.+||..+....... .....|.++...+++.+.+.. .+ -|.+|+..+++..
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFT 484 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEE
Confidence 7899998888874556677777999998765433221 124568888888877765544 44 5888998877654
Q ss_pred EEeec------ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 355 RTFSG------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 355 ~~~~~------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..... ....|.++...+++++.+... .| +..|+..
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~ 525 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQE 525 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEE
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCC
Confidence 32211 235789999998888766554 44 6667653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=99.01 Aligned_cols=223 Identities=12% Similarity=0.087 Sum_probs=153.3
Q ss_pred CCCCcEEEEecCCCeEEEEEcCCC----eeeEeec------C-cccCEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 016187 74 PTDATLVATGGGDDKGFFWRINQG----DWASEIQ------G-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDP 136 (394)
Q Consensus 74 p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~------~-h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~ 136 (394)
++..+++++|..+.+|.+.|+.+. +...+++ . -...-..+..+|+| +++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 667788999999999999998755 5555552 0 11234567889999 77777666 78999999
Q ss_pred CCCceEEEEecCCC---CEEEEEEcCCCCEEEEec-------------------CCCeEEEEeCCccceeeeeccc--Cc
Q 016187 137 SSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGS-------------------EDSTVWMWNADRAAYLNMFSGH--GS 192 (394)
Q Consensus 137 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s-------------------~d~~i~iw~~~~~~~~~~~~~h--~~ 192 (394)
.+++.+.++....+ --..+.|+|+++.+++.. ...+|.+||+.+++.++.+... ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999888863222 233477899999888874 3689999999988777666542 12
Q ss_pred CeEEEEE--CCCCCeEEEEe------CCCcEEEEcCCCCce--EEEE--cCCC----C---c------ccCeEEEEEcCC
Q 016187 193 SVTCGDF--TPDGKTICTGS------DDATLRVWNPKSGEN--IHVI--RGHP----Y---H------TEGLTCLTISAD 247 (394)
Q Consensus 193 ~v~~~~~--~~~~~~l~s~~------~dg~i~vwd~~~~~~--~~~~--~~~~----~---~------~~~i~~~~~~~~ 247 (394)
....+.| +|+++++..++ .+++|.+|....++- ...+ ...+ . . ......+.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 99999887766 566887766544321 1111 1100 0 0 134667889999
Q ss_pred CCEEEEEeC-CCcEEEEECC---CCcEEEEeccCC--------------CCEEEEEECCCCCeEEEEe
Q 016187 248 STLALSGSK-DGSVHMVNIT---TGKVVSSLVSHT--------------DSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 248 ~~~l~~g~~-dg~i~i~d~~---~~~~~~~~~~h~--------------~~i~~v~~~~~~~~l~s~s 297 (394)
+++|+++.. .+.|.++|+. +.+.+..+.... .....+.++|++++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 998887764 6799999985 235555543320 1357789999999888775
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-09 Score=93.82 Aligned_cols=221 Identities=11% Similarity=0.050 Sum_probs=146.6
Q ss_pred CCCCEE-EEecCCCeEEEEeCCcc----ceeeeec------ccC-cCeEEEEECCCCCeEEEEeCC------CcEEEEcC
Q 016187 159 PRGHIV-LAGSEDSTVWMWNADRA----AYLNMFS------GHG-SSVTCGDFTPDGKTICTGSDD------ATLRVWNP 220 (394)
Q Consensus 159 ~~~~~l-~~~s~d~~i~iw~~~~~----~~~~~~~------~h~-~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~ 220 (394)
++.++| +.+-.++.|+++|+.+. +..+.+. ... .....+...|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 666655 56667899999998644 4444442 111 234567789999 77776655 78999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCcEEEEeccCC--C
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-------------------KDGSVHMVNITTGKVVSSLVSHT--D 279 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~h~--~ 279 (394)
.+++.+..+........--..+.++|+++.+++.. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99998887753211111122467899999888874 37899999999998888876531 2
Q ss_pred CEEEEEE--CCCCCeEEEEe------CCCcEEEEeCCCC-------------Ccceec--------cCCCCEEEEEEeCC
Q 016187 280 SIECIGF--SRSSPWAATGS------MDQKLIIWDLQHS-------------LPRSTC--------DHEDGVTCLMWLGT 330 (394)
Q Consensus 280 ~i~~v~~--~~~~~~l~s~s------~dg~i~iwd~~~~-------------~~~~~~--------~~~~~v~~~~~~~~ 330 (394)
....+.| +|+++++..++ .+++|.+|..... ...... .-......+.++++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3344555 99999877766 5667765443211 000000 00234667889999
Q ss_pred CCEEEEEeC-CCeEEEEECC---CCeEEEEeeccc----------C----ceeEEEEccCCCEEEEEe
Q 016187 331 SKYVVTGCV-DGKVRVWDSL---SGDCVRTFSGHR----------D----AIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~~---~~~~~~~~~~h~----------~----~v~~l~~~~~~~~l~s~s 380 (394)
+++|.++.. .+.|.+||+. +.+.+..+.-.. . .-..++++|||++|+.+.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999988875 6899999985 335555554221 1 237899999999998887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-09 Score=102.31 Aligned_cols=296 Identities=13% Similarity=0.108 Sum_probs=178.3
Q ss_pred CCcEEEEecC-CCeEEEEEc-CCCeeeEeecCccc----------CE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 76 DATLVATGGG-DDKGFFWRI-NQGDWASEIQGHKD----------SV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 76 ~~~~lasg~~-d~~v~~w~~-~~~~~~~~~~~h~~----------~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
++.+++ ++. ++.++-.|. .+++.+-.+..... .+ ..+++ .+..++.++.|+.|..+|..+|+.+
T Consensus 62 ~g~vyv-~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYV-HSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEE-ECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEE-EeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 344443 344 677888888 77776644322110 00 11222 3567888889999999999999987
Q ss_pred EEEecCCC----CEEE-EEEcCCCCEEEEecC------CCeEEEEeCCccceeeeecccCc-------------------
Q 016187 143 CTLEGPGG----GVEW-VSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGS------------------- 192 (394)
Q Consensus 143 ~~~~~~~~----~v~~-~~~~~~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~h~~------------------- 192 (394)
-....... .+.. ... .++ .++.++. ++.|+.+|..+++.+-.+.....
T Consensus 139 W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 66543210 1110 001 134 4455544 78999999998876644322110
Q ss_pred -------------------CeEEEEECCCCCeEEEEeCC----------------CcEEEEcCCCCceEEEEcCCC----
Q 016187 193 -------------------SVTCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHP---- 233 (394)
Q Consensus 193 -------------------~v~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~---- 233 (394)
....+++.+....++.+..+ +.|..+|..+++.+-.++..+
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 00124566666666665532 369999999999876654321
Q ss_pred ---CcccCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEeccCC-------------CCE-------------
Q 016187 234 ---YHTEGLTCLTISADST---LALSGSKDGSVHMVNITTGKVVSSLVSHT-------------DSI------------- 281 (394)
Q Consensus 234 ---~~~~~i~~~~~~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------------~~i------------- 281 (394)
....++ .+...++|+ .++.++.+|.+.++|..+|+.+-...... .++
T Consensus 297 d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 297 DFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred ccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 111222 233334674 67788999999999999999876653221 111
Q ss_pred -------------EEEEECCCCCeEEEEe-------------------------------------CCCcEEEEeCCCCC
Q 016187 282 -------------ECIGFSRSSPWAATGS-------------------------------------MDQKLIIWDLQHSL 311 (394)
Q Consensus 282 -------------~~v~~~~~~~~l~s~s-------------------------------------~dg~i~iwd~~~~~ 311 (394)
..++++|+..+++... .+|.|..||+.+..
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 1356777766665543 35788899988776
Q ss_pred cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc-eeEEEEccCCCEEE
Q 016187 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA-IQAISVSAHQDFLV 377 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~ 377 (394)
..........+........+..++.++.||.|+.||..+|+.+.++...... -.-+.+..+++.++
T Consensus 456 ~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 456 AKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 6554443333322222334667888999999999999999999988743322 12344556776544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-08 Score=97.48 Aligned_cols=300 Identities=15% Similarity=0.157 Sum_probs=178.0
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccC---------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~---------V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 146 (394)
++.+++++..+ .++-+|..+++.+-.+...... -..+++ .+..++.++.|+.|..+|..+|+.+-...
T Consensus 68 ~g~vyv~~~~~-~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYS-RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTT-EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCC-CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 34444443323 4777888888766554332211 012222 35677888899999999999999876654
Q ss_pred cCCC----CEE---EEEEc-CCCC-EEEEec------CCCeEEEEeCCccceeeeecccC--------------------
Q 016187 147 GPGG----GVE---WVSWH-PRGH-IVLAGS------EDSTVWMWNADRAAYLNMFSGHG-------------------- 191 (394)
Q Consensus 147 ~~~~----~v~---~~~~~-~~~~-~l~~~s------~d~~i~iw~~~~~~~~~~~~~h~-------------------- 191 (394)
.... .+. .+.=. .+++ .+++++ .++.|+.+|..+++.+-......
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 3220 010 01100 1122 555654 37899999998877553322110
Q ss_pred ---------------------cCeEEEEECCCCCeEEEEeC--------------------C----CcEEEEcCCCCceE
Q 016187 192 ---------------------SSVTCGDFTPDGKTICTGSD--------------------D----ATLRVWNPKSGENI 226 (394)
Q Consensus 192 ---------------------~~v~~~~~~~~~~~l~s~~~--------------------d----g~i~vwd~~~~~~~ 226 (394)
..-...++.|...+++.+.. | +.|.-+|..+|+.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 00012456676677766553 2 68999999999987
Q ss_pred EEEcCCCC-------cccCeEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCcEEEEeccCC-------------CCE-
Q 016187 227 HVIRGHPY-------HTEGLTCLTIS-ADST---LALSGSKDGSVHMVNITTGKVVSSLVSHT-------------DSI- 281 (394)
Q Consensus 227 ~~~~~~~~-------~~~~i~~~~~~-~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------------~~i- 281 (394)
-.++..+. ...++ .+... .+|+ .++.++.+|.++++|..+|+++-...... .++
T Consensus 305 W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 66543211 11122 22222 4663 78889999999999999999886654321 000
Q ss_pred -------------------------------EEEEECCCCCeEEEEe---------------------------------
Q 016187 282 -------------------------------ECIGFSRSSPWAATGS--------------------------------- 297 (394)
Q Consensus 282 -------------------------------~~v~~~~~~~~l~s~s--------------------------------- 297 (394)
..++++|+..+++...
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 1245666555554432
Q ss_pred CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-E
Q 016187 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-F 375 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~ 375 (394)
.+|.|..||+.+............+..-.....+.+++.|+.||.++.||.++|+.+.++....+.+ .-+.+..+++ |
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 2578889998877665443322222111112246788889999999999999999999887543322 2366777876 4
Q ss_pred EEEE
Q 016187 376 LVSV 379 (394)
Q Consensus 376 l~s~ 379 (394)
+++.
T Consensus 544 v~~~ 547 (582)
T 1flg_A 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-09 Score=100.20 Aligned_cols=294 Identities=14% Similarity=0.118 Sum_probs=176.6
Q ss_pred ecC-CCeEEEEEc-CCCeeeEeecCccc-----------CEEEEEEcCCCCE----EEEEeCCCcEEEEeCCCCceEEEE
Q 016187 83 GGG-DDKGFFWRI-NQGDWASEIQGHKD-----------SVSSLAFSMDGQL----LASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 83 g~~-d~~v~~w~~-~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~----l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
++. ++.+.-.|. .+++.+-.+.-... ....++++|.+.. ++.++.|+.|..+|..+|+.+-..
T Consensus 68 ~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~ 147 (599)
T 1w6s_A 68 HTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKV 147 (599)
T ss_dssp ECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEee
Confidence 444 677777888 77776544432111 1123556544444 788889999999999999987665
Q ss_pred ecCCC----CEEE-EEEcCCCCEEEEec------CCCeEEEEeCCccceeeeecccCcC---------------------
Q 016187 146 EGPGG----GVEW-VSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHGSS--------------------- 193 (394)
Q Consensus 146 ~~~~~----~v~~-~~~~~~~~~l~~~s------~d~~i~iw~~~~~~~~~~~~~h~~~--------------------- 193 (394)
..... .+.. ... .++ .+++++ .++.|+.+|..+++.+-.+......
T Consensus 148 ~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~ 225 (599)
T 1w6s_A 148 ENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGL 225 (599)
T ss_dssp ECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTH
T ss_pred cCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccc
Confidence 43210 1111 011 134 455554 3799999999988765433221100
Q ss_pred ----------------e-EEEEECCCCCeEEEEeCC----------------CcEEEEcCCCCceEEEEcCCCC------
Q 016187 194 ----------------V-TCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPY------ 234 (394)
Q Consensus 194 ----------------v-~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~------ 234 (394)
+ ...++.+...+++.+..+ ++|.-+|..+|+.+-.+...+.
T Consensus 226 g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d 305 (599)
T 1w6s_A 226 GTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYA 305 (599)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcccccc
Confidence 0 123556677777777655 3799999999998766553221
Q ss_pred -cccCeEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCcEEEEeccCC-------------CCE---------------
Q 016187 235 -HTEGLTCLTIS-ADS---TLALSGSKDGSVHMVNITTGKVVSSLVSHT-------------DSI--------------- 281 (394)
Q Consensus 235 -~~~~i~~~~~~-~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------------~~i--------------- 281 (394)
...++ .+... .+| ..++.++.+|.+.++|..+|+++-...... .++
T Consensus 306 ~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~ 384 (599)
T 1w6s_A 306 GVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKD 384 (599)
T ss_dssp CCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEE
T ss_pred CCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccE
Confidence 11122 22332 567 567778999999999999999876543211 111
Q ss_pred -----------EEEEECCCCCeEEEEe---------------------------------------CCCcEEEEeCCCCC
Q 016187 282 -----------ECIGFSRSSPWAATGS---------------------------------------MDQKLIIWDLQHSL 311 (394)
Q Consensus 282 -----------~~v~~~~~~~~l~s~s---------------------------------------~dg~i~iwd~~~~~ 311 (394)
..++++|+..++++.. ..|.|..||+.+..
T Consensus 385 ~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~ 464 (599)
T 1w6s_A 385 ICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGD 464 (599)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCC
T ss_pred eccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCC
Confidence 1345666555544321 34678888887776
Q ss_pred cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-EEEEE
Q 016187 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-FLVSV 379 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~l~s~ 379 (394)
......+..+...-.....+..|+.|+.||.++.||.++|+.+-++.-..+.+ .-+.+..+|+ |+++.
T Consensus 465 ~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 465 YKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 55544322222111122356788889999999999999999998886433222 3355667776 44443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=104.85 Aligned_cols=258 Identities=14% Similarity=0.091 Sum_probs=161.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG 191 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~ 191 (394)
++.+..+|. |..++.++.|..|| .+++.......+...+..+...+++. +..++.+ +..+|. +++.+..+....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence 345556665 55567788899999 88887654443333445566666665 4445554 888886 444433333222
Q ss_pred cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
.......+. +..|..++.++.|..+|.. ++........ ...+.++...+++. ++.++.++.|..+|.. ++.+
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~---~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~ 169 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK---KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK 169 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS---SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC---CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe
Confidence 222222333 5667888889999999988 6655444322 22344556666776 5567788999999998 8777
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
..+......+.++.+.+++.+.+. + +.|..+| .+....... .....+.++...+++ .|..++.++.|..++ .+
T Consensus 170 ~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~-~~ 243 (330)
T 3hxj_A 170 WRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAIN-PD 243 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEEC-TT
T ss_pred EEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEEC-CC
Confidence 666555566777778777775544 3 7888998 443322222 223446667777766 455677788899997 46
Q ss_pred CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
++.+..+......+..+.+.+++. |..++.+|.+..++.
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 777766665555555666665554 555777877887774
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=108.35 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=184.2
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeec-----------------------------------Cc----ccCEEEEEEcC-
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQ-----------------------------------GH----KDSVSSLAFSM- 117 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~-----------------------------------~h----~~~V~~v~~s~- 117 (394)
..|.|||..|.++++-+.+++.+..+. |- .+...-...|.
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t 95 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 95 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence 346788888888888877766544331 10 01112244444
Q ss_pred ----CCCEEEEEeC-CCcEEEEeCCCCceEEEEecC-CCCEEEEEE-c-CCCCEEEEec------------------CCC
Q 016187 118 ----DGQLLASGGL-DGLVQIWDPSSGNLKCTLEGP-GGGVEWVSW-H-PRGHIVLAGS------------------EDS 171 (394)
Q Consensus 118 ----~g~~l~t~s~-d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~s------------------~d~ 171 (394)
||++|+.... +..|.+-|+.+.+....+.-+ ......+++ . |++.++++++ .++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 8888876655 556999999999987755543 245788888 4 8999888874 245
Q ss_pred eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc---------------EEEEcCCCCceEEEEcCCCCcc
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT---------------LRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~---------------i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.+.+.|..+.+....+.--. ....++++|+|+++++.+.+.. |.+.|.....
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------ 242 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------ 242 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee------------
Confidence 78899999887776655322 3456789999999998886642 2222211100
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CcE-EEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCC-
Q 016187 237 EGLTCLTISADSTLALSGSKDGSVHMVNITT--GKV-VSSLVSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSL- 311 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~- 311 (394)
.+.++|++... +.+.+.|.++ ++. +..+.. .....++.++||+++++.++ .+.+|.++|+.+..
T Consensus 243 ------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 243 ------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp ------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred ------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 01234444333 5599999998 554 444432 23567899999999876654 67899999987531
Q ss_pred -----------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----------CeEEEEeecccCce-----e
Q 016187 312 -----------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS----------GDCVRTFSGHRDAI-----Q 365 (394)
Q Consensus 312 -----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~ 365 (394)
......-......++|+++|...++.-.|+.|.+||+.+ .+.+.++..|-.+- .
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~ 391 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVM 391 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETT
T ss_pred ccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceecc
Confidence 111223345678899999994444566799999999876 56677777664432 2
Q ss_pred EEEEccCCCEEEEEeC
Q 016187 366 AISVSAHQDFLVSVSL 381 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s~ 381 (394)
.+.++|||++|++...
T Consensus 392 g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 392 GETLDATNDWLVCLSK 407 (595)
T ss_dssp TTSTTCCSSEEEEEES
T ss_pred ceEeCCCCCEEEEcCC
Confidence 3356799999998753
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-08 Score=85.26 Aligned_cols=249 Identities=10% Similarity=-0.003 Sum_probs=152.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-----EEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcC
Q 016187 120 QLLASGGLDGLVQIWDPSSGNL-----KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~ 193 (394)
.+|+.+.. +.|+.+++..... ...+..+...+..++|++++. ++++-...+.|..++.........+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34544443 4688888765432 112222223467899999655 5556666789999998765443333323346
Q ss_pred eEEEEECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc
Q 016187 194 VTCGDFTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGK 269 (394)
Q Consensus 194 v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~ 269 (394)
...+++.|++..|+ +-...+.|.++++........... .......++++|++..++.+.. .+.|..+++....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC---CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 78899999765554 555678899999864332222221 1235678999996555544443 4688888875432
Q ss_pred EEEEe-ccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 270 VVSSL-VSHTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 270 ~~~~~-~~h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
...+ ...-.....+++++++..|. +....++|..+++.................++.. .+..+++-...+.|..+|
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence 2222 12234678899999876654 4455678999998654322222222234556554 333444444568999999
Q ss_pred CCCCeEEEEeeccc-CceeEEEEccCCC
Q 016187 348 SLSGDCVRTFSGHR-DAIQAISVSAHQD 374 (394)
Q Consensus 348 ~~~~~~~~~~~~h~-~~v~~l~~~~~~~ 374 (394)
..+++.+..+.... .....+++.|++.
T Consensus 236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCCceEEEccccccccceeeecCccC
Confidence 99999998886433 2367888888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-08 Score=84.09 Aligned_cols=221 Identities=11% Similarity=0.054 Sum_probs=143.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~~~ 143 (394)
.....++++|.++.++.+-...+.|..++.........+.........++++|++..|+ +-...+.|.+++........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 35678999997777888877889999999876554433433335678999999766554 44567789999986543332
Q ss_pred EEecCCCCEEEEEEcCCCCEE-EEecC--CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCCcEEEEc
Q 016187 144 TLEGPGGGVEWVSWHPRGHIV-LAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWN 219 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l-~~~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd 219 (394)
...........++++|++..| ++... .+.|..++...................++++|+++.|. +-...+.|.++|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 233222467889999965544 44433 46888888764332222222234578899999877664 555568899999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCEEEEEECCCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSS 290 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~ 290 (394)
+........+.. ......+++. .+.++++....+.|..+|..+++.+..+.... .....+++.|++
T Consensus 196 ~~g~~~~~~~~~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 196 PAQPGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred cCCCceEEEecC----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 875433333322 1223455554 45555666677899999999999888875433 235667777664
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-07 Score=88.99 Aligned_cols=315 Identities=11% Similarity=0.093 Sum_probs=191.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-------h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
..|.++...+.+ .+.+. ... -+.+|+..++++...... ....|.++...++|.+.+ |+..+-|.+++..
T Consensus 211 ~~i~~i~~d~~g-~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNG-NIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTC-CEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETT
T ss_pred CceeEEEEcCCC-CEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCC
Confidence 468888887754 44432 233 688899877665432211 245699999998886554 5554568889987
Q ss_pred CCceEEEEe--------------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---------cccCcCe
Q 016187 138 SGNLKCTLE--------------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---------SGHGSSV 194 (394)
Q Consensus 138 ~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---------~~h~~~v 194 (394)
++....... .....|.++...+++. |..|+.++-|..++.......... ......|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 765432111 1235688888888776 445666777888887655432211 0123568
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
.++...++|+ |..|+.++-|..||..+++..............|.++...+++.+.+ |+.++.|..++..+++...-.
T Consensus 366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEec
Confidence 8888877765 55666666688898765432111110112335688888888877655 666677999998777543221
Q ss_pred c--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc------CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 275 V--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD------HEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 275 ~--~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
. .....|.++...+++.+.+. +. +-|..||..+........ ....|.++...+++.+.+ |+.++-|..|
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~ 520 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY 520 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred cCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence 1 13467999998888775544 34 558888876543322211 135688888888887655 4443347778
Q ss_pred ECCCCeEEEEeec----ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 347 DSLSGDCVRTFSG----HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 347 d~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+..+++.. .+.. ....|.++...+++.+.++.. +|.|..|+..
T Consensus 521 ~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 521 TPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp CTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred eCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence 87766543 3431 135688999888888766544 6654666644
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-08 Score=84.51 Aligned_cols=206 Identities=13% Similarity=0.120 Sum_probs=143.4
Q ss_pred eeEeecCcc--cCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEecCCCeE
Q 016187 99 WASEIQGHK--DSVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 99 ~~~~~~~h~--~~V~~v~~s~~g~~l~t~s~--d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
.+.+++ |. .....+.|+|+|.++++.+. ++.|++.|+.+++.+..+.-... ....+++.. +.++++.-.++.+
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v 88 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence 344553 33 34679999998755555543 57999999999999887763332 233455542 3445555678999
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l 251 (394)
.++|..+.+.+..+...... ...++++|+.++.+..++.|.++|+.+.+.+..+.... .....++.+.+. ++.++
T Consensus 89 ~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 99999998888777532111 23456788888777788999999999988777665321 111235667777 67666
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccC-------------CCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSSP-WAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h-------------~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~ 309 (394)
+....++.|.+.|+.+++++..+... ....+.++|+|++. +++++...+++...++..
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 66667889999999999998887531 13568999999976 566666788888887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-08 Score=82.58 Aligned_cols=194 Identities=8% Similarity=-0.049 Sum_probs=133.3
Q ss_pred CeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 193 SVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 193 ~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
....++|+|++.+.++.+. +++|++.|+.+++.+..+.... ......+++. .+.++++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD--SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT--TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC--CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcE
Confidence 3578999998755555443 6799999999999887765321 1112234444 235555666789999999999999
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---C---CCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---H---EDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
+.++... .+ ....+++++..++.+..+++|.++|..+........ . -..++.+.|. ++...+....++.|.
T Consensus 99 ~~~i~~g-~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 99 IKNFTHQ-MK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEEECC-SS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEECC-CC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 9888543 11 224466677777777778999999998765433321 1 1236677887 665444444678999
Q ss_pred EEECCCCeEEEEeeccc-------------CceeEEEEccCCC-EEEEEeCCCcEEEEeccC
Q 016187 345 VWDSLSGDCVRTFSGHR-------------DAIQAISVSAHQD-FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 345 iwd~~~~~~~~~~~~h~-------------~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~~ 392 (394)
+.|..+++.+..+.-.. ...+.++|+|+++ +++++...+++...++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 99999999999886311 2458999999976 555666788888877653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-09 Score=99.32 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=154.3
Q ss_pred CCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 016187 75 TDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAF-S-MDGQLLASGG------------------LDGLVQI 133 (394)
Q Consensus 75 ~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~-s-~~g~~l~t~s------------------~d~~i~v 133 (394)
++..++++...+.+|.+-|+.+.+....+.- .......+++ + |++++++.++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4567788888899999999999998874432 1245788888 5 9999998885 3457899
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC--------------------------------------eEEE
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--------------------------------------TVWM 175 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~--------------------------------------~i~i 175 (394)
.|..+.+...++.-.. ....++.+|+++++++.+.+. .+.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998887766332 345678999999888777543 2455
Q ss_pred EeCCc--cce-eeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceE---------EEEcCCCCcccCeEEE
Q 016187 176 WNADR--AAY-LNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENI---------HVIRGHPYHTEGLTCL 242 (394)
Q Consensus 176 w~~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~i~~~ 242 (394)
.|..+ ++. +..+.. .....++.++|||++++.+ ..+.+|.++|+.+.+.. .... ......+...+
T Consensus 259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPELGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBCCSCEEEE
T ss_pred EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCCCCCcceE
Confidence 55554 222 223321 2234578999999987655 46789999999864310 0011 11123568889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC----------CcEEEEeccCCCCE-----EEEEECCCCCeEEEEeC
Q 016187 243 TISADSTLALSGSKDGSVHMVNITT----------GKVVSSLVSHTDSI-----ECIGFSRSSPWAATGSM 298 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~h~~~i-----~~v~~~~~~~~l~s~s~ 298 (394)
+|+|+|..+++.-.|+.|.+||+.+ .+.+.++..|-.+- ..+.++|+++||+++..
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999996666778899999999977 56788887765542 12346899999998754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-08 Score=82.16 Aligned_cols=192 Identities=17% Similarity=0.188 Sum_probs=132.1
Q ss_pred eeEeecCcc--cCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEEecCCCCE-EEEEEcCCCCEEEEecCCCeE
Q 016187 99 WASEIQGHK--DSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 99 ~~~~~~~h~--~~V~~v~~s~~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s~d~~i 173 (394)
.+.+++ |. .....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+....... ..++... ++++...-.++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEE
Confidence 345554 33 345889998 677777777766 89999999999988876544322 2244432 2344445568999
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l 251 (394)
.+||..+.+.+..+...... ..+.++++.|+.+..+..|.++|+.+.+.+..+.... .....++-+.+. +|.++
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 99999999888877643321 2344677877777767889999999998877765321 111334556665 67666
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccC------------CCCEEEEEECCCCCeEEEEe
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSH------------TDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h------------~~~i~~v~~~~~~~~l~s~s 297 (394)
+..-.+..|.+.|..+++++..+... .+-.+.++++|+...|...+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 65657889999999999998877532 13568999999877665554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-06 Score=84.00 Aligned_cols=313 Identities=11% Similarity=0.108 Sum_probs=192.3
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec--------------CcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--------------GHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~--------------~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
..|+++...+++ .+.+ |...+-+.+++..+.++..... -....|.++...++|.+- .|+.++-
T Consensus 258 ~~i~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDN-KLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTS-EEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred ceEEEEEECCCC-CEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 468888887644 3333 3343567788877655432111 134679999999988754 5666677
Q ss_pred EEEEeCCCCceEEEEe---------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLE---------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGD 198 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~ 198 (394)
|..++..++....... .....|.++...+++.+. .|+.++-|..|+..++...... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 8999887665432211 123568888888777654 5565667888988765432211 12345688888
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC-
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH- 277 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h- 277 (394)
..++|+ |..|+.++-|..+|..+++. ..+.........|.++...+++.+.+. +. +.|..+|..+++........
T Consensus 414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 414 KDSEGN-LWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp ECTTSC-EEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTT
T ss_pred ECCCCC-EEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcc
Confidence 877776 44566667788999877643 222211123456889988888876554 44 56889998876543222111
Q ss_pred ----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 278 ----TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 278 ----~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
...|.++...+++.+.+. +.++-|..||.......... .....|.++...+++.+.++ +.+|.|..||..
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~ 567 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSAR 567 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTT
T ss_pred cccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCC
Confidence 357899999988876554 44334777887654322211 12346888888888876554 447766899987
Q ss_pred CCeEEEEeecc----cCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 350 SGDCVRTFSGH----RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 350 ~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+++. ..+... ...|.++...++|++.+++ ..| |..|+.
T Consensus 568 ~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~ 609 (781)
T 3v9f_A 568 NFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYIT 609 (781)
T ss_dssp TCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEET
T ss_pred CCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEEC
Confidence 7654 344322 2457888888888876654 455 444553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-08 Score=95.61 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=172.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC----------E-EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG----------V-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+..++.++.++.|.-+|..+|+.+-.+...... + ..+.. .+..++.++.|+.+..+|..+++.+-.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556777888899999999999988776532210 0 11122 2457888889999999999998876554
Q ss_pred cccCc-CeEEEEECC--CCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCCc-----------------------
Q 016187 188 SGHGS-SVTCGDFTP--DGKTICTGSD------DATLRVWNPKSGENIHVIRGHPYH----------------------- 235 (394)
Q Consensus 188 ~~h~~-~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~----------------------- 235 (394)
..... ....+.-+| .+..++.+.. +|.|..+|..+|+.+-.+...+..
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 33210 000000111 1334555543 589999999999987766431100
Q ss_pred -----ccCeEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEecc--CC-------CCEE
Q 016187 236 -----TEGLTCLTISADSTLALSGSKDG-------------------SVHMVNITTGKVVSSLVS--HT-------DSIE 282 (394)
Q Consensus 236 -----~~~i~~~~~~~~~~~l~~g~~dg-------------------~i~i~d~~~~~~~~~~~~--h~-------~~i~ 282 (394)
......++++|+..+++.++.++ .|..+|+.+|+.+-.++. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 00112467888888888888776 399999999998766543 22 2222
Q ss_pred EEEECCCCC---eEEEEeCCCcEEEEeCCCCCcceeccC-------------CC------------------------CE
Q 016187 283 CIGFSRSSP---WAATGSMDQKLIIWDLQHSLPRSTCDH-------------ED------------------------GV 322 (394)
Q Consensus 283 ~v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------~~------------------------~v 322 (394)
...+..+++ .++.++.+|.+.++|..+......... .. ..
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w 383 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence 222223454 688889999999999876544311000 00 00
Q ss_pred EEEEEeCCCCEEEEE------------------------------------eCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 323 TCLMWLGTSKYVVTG------------------------------------CVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 323 ~~~~~~~~~~~l~sg------------------------------------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
..++++|+..++... ..+|.|+.||..+++.+-++..+. +...
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~ 462 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNG 462 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcC
Confidence 125667766655431 134889999999999987776433 3444
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+...+.+++.++.||.++.||..+-
T Consensus 463 ~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 463 GTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ceeEeCCCEEEEECCcccchhhhhhcC
Confidence 445557788999999999999997653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-07 Score=82.02 Aligned_cols=236 Identities=9% Similarity=0.011 Sum_probs=146.1
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-------------------CcccCEEEEEEcC-CCCEEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------------------GHKDSVSSLAFSM-DGQLLASG 125 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-------------------~h~~~V~~v~~s~-~g~~l~t~ 125 (394)
.-.++++.|+ +.++.++..++.|..|+..+++...... .....+..+++.+ +|+ |+.+
T Consensus 20 ~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3456788885 5545566778899999887655432110 0123578999998 565 4455
Q ss_pred eCCCcEEEEeCCCCceEEEEec----CCCCEEEEEEcC-CCCEEEEecC-----------------CCeEEEEeCCccce
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEG----PGGGVEWVSWHP-RGHIVLAGSE-----------------DSTVWMWNADRAAY 183 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~s~-----------------d~~i~iw~~~~~~~ 183 (394)
...+.|.++|..++........ .......+++.+ +++++++-.. ++.+..|+..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 4455588898776543221111 113467899999 8987776432 36788888766543
Q ss_pred eeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC----
Q 016187 184 LNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSK---- 256 (394)
Q Consensus 184 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---- 256 (394)
..... .......++++|+++.|+.+ +..+.|.+|++.... ....+... .. ...++++++|+++++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCcccc
Confidence 32221 12334578999999866555 556889999986421 12222211 12 677899999987777654
Q ss_pred ------CCcEEEEECCCCcEEEEeccCC----CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 257 ------DGSVHMVNITTGKVVSSLVSHT----DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 257 ------dg~i~i~d~~~~~~~~~~~~h~----~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+.|..+|. .++.+..+.... ..+.++.+ .++.+.++....+.|..+++...
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888887 477776665432 34566666 35555556566788888887643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-07 Score=80.96 Aligned_cols=236 Identities=8% Similarity=0.080 Sum_probs=151.2
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-------------------ccCcCeEEEEECC-CCCeEEEEe
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-------------------GHGSSVTCGDFTP-DGKTICTGS 210 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-------------------~h~~~v~~~~~~~-~~~~l~s~~ 210 (394)
....++|.+++++++++..++.|..|+..++....... .....+..+++.+ +++ |+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 34567889998877888888999999887654321110 0113467899998 554 55554
Q ss_pred CCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcE
Q 016187 211 DDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISA-DSTLALSGSK-----------------DGSVHMVNITTGKV 270 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~g~~-----------------dg~i~i~d~~~~~~ 270 (394)
..+.|..+|..+++. ..+... .........+++.+ +|.++++-.. ++.|..+|..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 445588898765532 222211 01113467799999 9988776543 36788999877754
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCc---ceeccCCCCEEEEEEeCCCCEEEEEeC-------
Q 016187 271 VSSLVSHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQHSLP---RSTCDHEDGVTCLMWLGTSKYVVTGCV------- 339 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~sg~~------- 339 (394)
..... .-...+.++++|++.+|..+ ...++|..|++..... ........ ...+++.+++++.++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 32211 12345678999999866554 5568999999864321 11111222 677889999987766544
Q ss_pred ---CCeEEEEECCCCeEEEEeeccc----CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 340 ---DGKVRVWDSLSGDCVRTFSGHR----DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 340 ---dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+.|..+|. .++.+..+.... ..+..+++ .+++++++....+.|..++++.
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 467889986 577777776432 34677777 4677777777788999998763
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-07 Score=89.69 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=165.8
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCceEEEEecCCCC----------E-EEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 119 GQLLASGGL-DGLVQIWDP-SSGNLKCTLEGPGGG----------V-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 119 g~~l~t~s~-d~~i~vwd~-~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
+..++.++. ++.|.-+|. .+|+.+-.+...... + ..+.. .+..++.++.|+.+..+|..+++.+-
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456666776 889999999 899987666432210 0 11122 24577888889999999999888764
Q ss_pred eecccC----cCeEEEEECC--CCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCCc------------------
Q 016187 186 MFSGHG----SSVTCGDFTP--DGKTICTGSD------DATLRVWNPKSGENIHVIRGHPYH------------------ 235 (394)
Q Consensus 186 ~~~~h~----~~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------ 235 (394)
...... ..+. -+| .+..++.++. ++.|..+|..+++.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 433211 0111 112 1345555554 799999999999987665432110
Q ss_pred ---------------cc--CeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEecc--CC--
Q 016187 236 ---------------TE--GLTCLTISADSTLALSGSKD----------------GSVHMVNITTGKVVSSLVS--HT-- 278 (394)
Q Consensus 236 ---------------~~--~i~~~~~~~~~~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~~--h~-- 278 (394)
.. ....+++.++...++.+..+ +.|..+|..+|+.+-.++. |.
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 00 00124566766667666542 3599999999998766542 21
Q ss_pred ------CCEEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCcceeccCC--------------CCE-------------
Q 016187 279 ------DSIECIGFSRSSP---WAATGSMDQKLIIWDLQHSLPRSTCDHE--------------DGV------------- 322 (394)
Q Consensus 279 ------~~i~~v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------~~v------------- 322 (394)
.++. +....+++ .++.++.+|.+.++|..+.......... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 2221 22223563 5677888999999998765443221100 001
Q ss_pred -------------EEEEEeCCCCEEEEEe-------------------------------------CCCeEEEEECCCCe
Q 016187 323 -------------TCLMWLGTSKYVVTGC-------------------------------------VDGKVRVWDSLSGD 352 (394)
Q Consensus 323 -------------~~~~~~~~~~~l~sg~-------------------------------------~dg~i~iwd~~~~~ 352 (394)
..++++|+..+++..+ .+|.|..||..+++
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 2356777777666653 35789999999999
Q ss_pred EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 353 CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 353 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+-++... .++....+...+..++.++.||.++.||..+-
T Consensus 456 ~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 456 AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 98877632 23333333445667777999999999997754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-08 Score=95.63 Aligned_cols=271 Identities=10% Similarity=0.035 Sum_probs=155.3
Q ss_pred EEEEcCCCCcEEEEecCCC-----------eEEEEEcCCCeeeEe--ec-CcccCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 016187 69 SVACSPTDATLVATGGGDD-----------KGFFWRINQGDWASE--IQ-GHKDSVSSLAFSMDGQLLASGGL-DGLVQI 133 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~-----------~v~~w~~~~~~~~~~--~~-~h~~~V~~v~~s~~g~~l~t~s~-d~~i~v 133 (394)
++++.|.++.+++.||.+. .+.+||..++++... +. .+.....++++.++|++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 4556664567777776543 578899988776432 22 13333446788899999999984 458999
Q ss_pred EeCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEec-CC-----CeEEEEeCCccceeeee----cccCcCeEEEEECCC
Q 016187 134 WDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGS-ED-----STVWMWNADRAAYLNMF----SGHGSSVTCGDFTPD 202 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s-~d-----~~i~iw~~~~~~~~~~~----~~h~~~v~~~~~~~~ 202 (394)
||..+.+....-..+.. .-..+...+++++++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 99988765533221211 123455667899998888 34 57899998765432210 000000000122345
Q ss_pred CCeEEEEeCC---------CcEEEEcCCCCceEEEEcCCCC------cccCeEEEEEc-CCCCEEEEEeCCC--------
Q 016187 203 GKTICTGSDD---------ATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTIS-ADSTLALSGSKDG-------- 258 (394)
Q Consensus 203 ~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~------~~~~i~~~~~~-~~~~~l~~g~~dg-------- 258 (394)
++.++.|+.+ ..+..||+.++........... ....-.++.+. .++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555544 3567888887664433322111 01112334443 4778888887543
Q ss_pred ---cEEEEECCCCcEEEEe--ccCCCC-EEEEEECCCCCeEEEEeCC-----------CcEEEEeCCCCCccee--c-cC
Q 016187 259 ---SVHMVNITTGKVVSSL--VSHTDS-IECIGFSRSSPWAATGSMD-----------QKLIIWDLQHSLPRST--C-DH 318 (394)
Q Consensus 259 ---~i~i~d~~~~~~~~~~--~~h~~~-i~~v~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~--~-~~ 318 (394)
.+.+||..+.+-.... ..+... -.++...|++.+++.|+.+ ..+.+||..+..-... . ..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 6788888776644332 112222 2344567889999988754 4688999765321111 0 11
Q ss_pred CCCEEEEEEeCCCCEEEEEeC
Q 016187 319 EDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~ 339 (394)
.....+..+.++++.++.|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 112234556789999999884
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-07 Score=75.79 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred eeeEeecC-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEecCCCeEEE
Q 016187 98 DWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 98 ~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
+.+.+++- -......+.|+. +.++.+.+.++.|+++|+.+++.+..+ -.... -..+++.. ++++...-.++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence 34445531 124467888874 567778888899999999999988777 33322 13355543 345555667899999
Q ss_pred EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEcCCCCEEEE
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~ 253 (394)
||..+.+.+..+...... . .+.++++.|+.+..++.|.++|+.+.+.+..+... ......++-+.+. +|.+++.
T Consensus 121 ~D~~Tl~~~~ti~~~~eG-w--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEG-W--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECSSCC-C--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECCcCcEEEEEeCCCce-e--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence 999999888877643221 2 33467888887777899999999999887776531 1122245566666 6766655
Q ss_pred EeCCCcEEEEECCCCcEEEEeccC-------------CCCEEEEEECCCCCe-EEEE
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSSPW-AATG 296 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h-------------~~~i~~v~~~~~~~~-l~s~ 296 (394)
.-.+..|.+.|..+++++..+... .+-.+.|+++|++.. +++|
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 557889999999999998876431 135789999997654 4444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-07 Score=74.66 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=130.5
Q ss_pred eeEeecCcc--cCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEEecCCCCE-EEEEEcCCCCEEEEecCCCeE
Q 016187 99 WASEIQGHK--DSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 99 ~~~~~~~h~--~~V~~v~~s~~g~~l~t~s~d--~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s~d~~i 173 (394)
.+.+++ |. .....+.|++ +.++.+.+.+ ..|+++|+.+++.+..+....... ..++.. .++++...-.++.+
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 344553 43 4577899987 5666666665 489999999999988876554322 234443 23445555678999
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l 251 (394)
.+||..+.+.+..+...... . .+.++++.|+.+..++.|.++|+.+.+.+..+... ......++-+.+. ++.++
T Consensus 88 ~v~D~~tl~~~~ti~~~~~G-w--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEG-W--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSCC-C--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCCc-e--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 99999999888877643322 2 33456777777777899999999998887776532 1112345555554 66666
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccC-------------CCCEEEEEECCCCCeEEEEe
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h-------------~~~i~~v~~~~~~~~l~s~s 297 (394)
+..-.+..|.+.|..+++++..+... .+-.+.|+++|+...|...+
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 55556889999999999998876421 13568899999766554443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-07 Score=77.86 Aligned_cols=188 Identities=11% Similarity=0.099 Sum_probs=129.1
Q ss_pred ccCCc--EEEEEEcCCCCcEEEEecCCC--eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 016187 62 GHSDE--VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDP 136 (394)
Q Consensus 62 ~h~~~--v~~~~~~p~~~~~lasg~~d~--~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~ 136 (394)
.|... ...|.|+ ++.+..+.|.++ .+++.|+.+++.+..+.-.. ........+++..|.... .++.+.++|.
T Consensus 38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 45544 3788888 356777777665 89999999999888775432 333333334455655444 5889999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc--C---cCeEEEEECCCCCeEEEEeC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~~~ 211 (394)
.+.+.+.++.....+ ..+.+++..|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|+..+..-.
T Consensus 115 ~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 115 RNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp TTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 999999888754332 233456777777666889999999988776665432 2 233456676 6766666667
Q ss_pred CCcEEEEcCCCCceEEEEcCCCC---------cccCeEEEEEcCCCCEEEEEeC
Q 016187 212 DATLRVWNPKSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+..|.+.|+.+++.+..+..... .....+.++++|+++.|++.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999998887764311 1235688999998776665543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.4e-08 Score=94.03 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=154.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCceEE--EEec-CCCCEEEEEEcCCCCEEEEecC-CCeEEE
Q 016187 112 SLAFSM-DGQLLASGGLDG-----------LVQIWDPSSGNLKC--TLEG-PGGGVEWVSWHPRGHIVLAGSE-DSTVWM 175 (394)
Q Consensus 112 ~v~~s~-~g~~l~t~s~d~-----------~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~s~-d~~i~i 175 (394)
.+++.+ +|++++.|+.+. .+.+||+.+++... .+.. +......+++.+++++++.|+. +..+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 58899998886532 2322 2223345677889999999884 568999
Q ss_pred EeCCccceeeeecccCc-CeEEEEECCCCCeEEEEe-CC-----CcEEEEcCCCCceEEEEcCC---CCcccCeEEEEEc
Q 016187 176 WNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGS-DD-----ATLRVWNPKSGENIHVIRGH---PYHTEGLTCLTIS 245 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~---~~~~~~i~~~~~~ 245 (394)
||..+.+-...-..+.. .-.++++.++++.++.|+ .+ ..+.+||+.+++ ...+... +.....- ...+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-W~~~~~~~~~p~~~~~~-~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSLPNAKVNPMLTADK-QGLYR 347 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEETTSCSGGGCCCCT-TGGGT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc-ceeCCCccccccccccc-cceee
Confidence 99876543322111111 112345667899999988 44 569999998765 2333110 0000000 01122
Q ss_pred CCCCEEEEEeCCC---------cEEEEECCCCcEEEEeccCC---------CCEEEEEEC-CCCCeEEEEeCCC------
Q 016187 246 ADSTLALSGSKDG---------SVHMVNITTGKVVSSLVSHT---------DSIECIGFS-RSSPWAATGSMDQ------ 300 (394)
Q Consensus 246 ~~~~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~h~---------~~i~~v~~~-~~~~~l~s~s~dg------ 300 (394)
.++..++.|+.+| .+..||..+.........+. ..-.++.+. .++.+++.|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 4555556665444 46788887765433322111 122344443 3677778877532
Q ss_pred -----cEEEEeCCCCCcceec---cCCCC-EEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCeEEE--Eee
Q 016187 301 -----KLIIWDLQHSLPRSTC---DHEDG-VTCLMWLGTSKYVVTGCVD-----------GKVRVWDSLSGDCVR--TFS 358 (394)
Q Consensus 301 -----~i~iwd~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~--~~~ 358 (394)
.+.+||..+..-.... ..... -.+++..++++.++.|+.+ ..+.+||..+.+-.. .+.
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~ 507 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 507 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence 5777887653221111 11112 2344567899999998864 468999987665332 122
Q ss_pred cccCceeEEEEccCCCEEEEEeC
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
..+.......+.+++++++.||.
T Consensus 508 ~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CccccccHhhcCCCcEEEecCCC
Confidence 22222234456689999999985
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-07 Score=85.83 Aligned_cols=271 Identities=12% Similarity=0.074 Sum_probs=164.6
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCceEEEEecCCCC-----------EEEEEEcCCCCE----EEEecCCCeEEEEeCCcc
Q 016187 119 GQLLASGGL-DGLVQIWDP-SSGNLKCTLEGPGGG-----------VEWVSWHPRGHI----VLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 119 g~~l~t~s~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~s~d~~i~iw~~~~~ 181 (394)
+..++.++. ++.|.-+|. .+|+.+-.+...... ...+++.|.+.. ++.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666776 889999999 899988766432210 122445333333 778888999999999988
Q ss_pred ceeeeecccC----cCeEE-EEECCCCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCcc--------------
Q 016187 182 AYLNMFSGHG----SSVTC-GDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYHT-------------- 236 (394)
Q Consensus 182 ~~~~~~~~h~----~~v~~-~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~-------------- 236 (394)
+.+-...... ..+.+ -.+ .++ .++.++ .+|.|+-+|.++|+.+-.+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8764432211 01111 011 134 455554 38999999999999876654321100
Q ss_pred -------------------cC--eEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEecc--C
Q 016187 237 -------------------EG--LTCLTISADSTLALSGSKD----------------GSVHMVNITTGKVVSSLVS--H 277 (394)
Q Consensus 237 -------------------~~--i~~~~~~~~~~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~~--h 277 (394)
.+ -...++.++..+++.+..+ +.|.-+|..+|+.+=.++. |
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 00 0134566777777777765 3899999999998765543 2
Q ss_pred C--------CCEEEEEEC-CCC---CeEEEEeCCCcEEEEeCCCCCcceeccC--------------CCC----------
Q 016187 278 T--------DSIECIGFS-RSS---PWAATGSMDQKLIIWDLQHSLPRSTCDH--------------EDG---------- 321 (394)
Q Consensus 278 ~--------~~i~~v~~~-~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~---------- 321 (394)
. .++. +... .++ ..++.++.+|.+.++|..+......... ..+
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 1 1222 2222 456 4677788999999999876544322110 000
Q ss_pred ----------------EEEEEEeCCCCEEEEE---------------------------------e------CCCeEEEE
Q 016187 322 ----------------VTCLMWLGTSKYVVTG---------------------------------C------VDGKVRVW 346 (394)
Q Consensus 322 ----------------v~~~~~~~~~~~l~sg---------------------------------~------~dg~i~iw 346 (394)
...++++|+.+++++. + ..|.|..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 0134556655544432 1 35789999
Q ss_pred ECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 347 DSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 347 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|+.+++.+-+... ..++..-.+...+.+++.++.||.++.||.++-
T Consensus 459 D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 459 NAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 9999998877652 222222122335677777999999999997653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-06 Score=73.22 Aligned_cols=225 Identities=12% Similarity=0.057 Sum_probs=138.0
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-C-cEEEEcCCCCceEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A-TLRVWNPKSGENIH 227 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g-~i~vwd~~~~~~~~ 227 (394)
.....++|.++++++++-...+.|..|+..... ...+. ....+..+++.++|+++++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999999987777788999999987542 22222 23467889999999966655432 2 46667777776433
Q ss_pred EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEec---------cCCCCEEEEEECCCCCeEEE-E
Q 016187 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLV---------SHTDSIECIGFSRSSPWAAT-G 296 (394)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~---------~h~~~i~~v~~~~~~~~l~s-~ 296 (394)
.... + .......++..+++..+++...++.|..+|..+++. +.... ..-...+.+ ++++.+|.. -
T Consensus 110 ~~~~-~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTL-P-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEC-T-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeC-C-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 2221 1 112234445556555566555689999999876531 21110 111234455 777776544 4
Q ss_pred eCCCcEEEEeCCC-CCc--ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeecccCceeEEEEc-
Q 016187 297 SMDQKLIIWDLQH-SLP--RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFSGHRDAIQAISVS- 370 (394)
Q Consensus 297 s~dg~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~- 370 (394)
...++|..|++.. ... ............+++.+++++.++-...+.|.+++.. ++... .+...-...++++|.
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 5578899999864 111 1111111234457788999887777778899999975 66532 233323457899998
Q ss_pred --cCCCEEEEEeC
Q 016187 371 --AHQDFLVSVSL 381 (394)
Q Consensus 371 --~~~~~l~s~s~ 381 (394)
++++.|+.++.
T Consensus 265 ~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 265 TEGDCTAIYVVTN 277 (306)
T ss_dssp STTTTTEEEEEEC
T ss_pred ccCCCCEEEEECC
Confidence 78776665543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-07 Score=75.99 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=127.1
Q ss_pred ccCCc--EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEE--EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 62 GHSDE--VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 62 ~h~~~--v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~--~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
.|... ...|.|+ ++.+..+.|.++.+++.|+++++.+..+ - ..... .+++.. +++.+..-.++.+.+||..
T Consensus 50 phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 50 PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 45443 3688887 4678888899999999999999988776 2 22333 355443 2344445578899999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc--cCc---CeEEEEECCCCCeEEEEeCC
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGS---SVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~~~d 212 (394)
+.+.+.++.....+ . .+.++++.|+.+..++.|.++|..+.+.+..+.- +.. .++.+.|. +|+..+..-.+
T Consensus 125 Tl~~~~ti~~~~eG-w--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 125 PPQRERTTRYSGEG-W--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp TTEEEEEEECSSCC-C--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred cCcEEEEEeCCCce-e--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 99999888754332 2 2335677777777799999999998877766543 222 34556666 67666666578
Q ss_pred CcEEEEcCCCCceEEEEcCCC----------CcccCeEEEEEcCCCCE-EEEE
Q 016187 213 ATLRVWNPKSGENIHVIRGHP----------YHTEGLTCLTISADSTL-ALSG 254 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~-l~~g 254 (394)
..|.+.|+.+++.+..+.... ....-.+.++++|+++. +++|
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 899999999999887775321 11235788999997654 4444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-05 Score=71.04 Aligned_cols=229 Identities=11% Similarity=0.086 Sum_probs=138.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC--CeEEEEeCCccceee
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED--STVWMWNADRAAYLN 185 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--~~i~iw~~~~~~~~~ 185 (394)
.....++|+++|+++++-..++.|..||.... ....+. .......+++.++++++++.... ..+..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999997777778899999997753 333333 33567889999999976665432 247777766665433
Q ss_pred eecc-cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcC-----CC-CcccCeEEEEEcCCCCEE-EEEeC
Q 016187 186 MFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRG-----HP-YHTEGLTCLTISADSTLA-LSGSK 256 (394)
Q Consensus 186 ~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~-----~~-~~~~~i~~~~~~~~~~~l-~~g~~ 256 (394)
.... .......++..+++..+++-..++.|.++|...++ .+..... .. ........+ +|++..+ ++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 2211 12223444555555555555568889999986543 1211111 00 011123444 7777654 55566
Q ss_pred CCcEEEEECCC-CcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-ecc-CCCCEEEEEEe---
Q 016187 257 DGSVHMVNITT-GKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCD-HEDGVTCLMWL--- 328 (394)
Q Consensus 257 dg~i~i~d~~~-~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~--- 328 (394)
.+.|..+++.. ++. ...+. .......+++++++.+.++....+.|.+++........ ... .-...++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred CCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEeccc
Confidence 78999999864 321 11111 01245668899999887777778899999976332111 111 22458899998
Q ss_pred CCCCEEEEEeCCC
Q 016187 329 GTSKYVVTGCVDG 341 (394)
Q Consensus 329 ~~~~~l~sg~~dg 341 (394)
++++.|+..+..+
T Consensus 267 ~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 267 GDCTAIYVVTNGG 279 (306)
T ss_dssp TTTTEEEEEECTT
T ss_pred CCCCEEEEECCCC
Confidence 7877777665443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-06 Score=71.52 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=125.8
Q ss_pred ccCCc--EEEEEEcCCCCcEEEEecCC--CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 016187 62 GHSDE--VYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDP 136 (394)
Q Consensus 62 ~h~~~--v~~~~~~p~~~~~lasg~~d--~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~ 136 (394)
.|... ...|.|++ +.+..|.|.+ ..++..|+.+++.+..+.-... .......+.+..|. ..-.++.+.++|.
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 56544 56899986 5677776665 4899999999998887653222 22222223344444 4457889999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc--C---cCeEEEEECCCCCeEEEEeC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~~~ 211 (394)
.+.+.+.++.....+ ..+ .+++..|+.+..++.|.++|..+.+.+..+.-. . ..++.+.+. +|+..+..-.
T Consensus 93 ~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp TTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 999999888765443 233 356666666667899999999988776655432 2 233455554 6666666656
Q ss_pred CCcEEEEcCCCCceEEEEcCCCC----------cccCeEEEEEcCCCCEEEEEe
Q 016187 212 DATLRVWNPKSGENIHVIRGHPY----------HTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~g~ 255 (394)
+..|.+.|+.+++.+..+..... ...-.+.++++|++..|++.+
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 78999999999998887753211 123568899999766555443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=6e-06 Score=79.64 Aligned_cols=269 Identities=14% Similarity=0.115 Sum_probs=160.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCE---------EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV---------EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
+..++.++.++.|.-+|..+|+.+-.+....... ..++. .+..++.++.++.+..+|..+++.+-....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3455555554459999999999877665332110 11122 245677888899999999998887644332
Q ss_pred cC---------cCeEEEEEC-CCCC-eEEEEe------CCCcEEEEcCCCCceEEEEcCCCCcc----------------
Q 016187 190 HG---------SSVTCGDFT-PDGK-TICTGS------DDATLRVWNPKSGENIHVIRGHPYHT---------------- 236 (394)
Q Consensus 190 h~---------~~v~~~~~~-~~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~---------------- 236 (394)
.. .++ +.=. .+|+ .++.++ .++.|.-+|..+|+.+-.........
T Consensus 146 ~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 146 ADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp SCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 21 111 1111 1233 566655 37899999999998765543210000
Q ss_pred ----------------------cCeEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCcE
Q 016187 237 ----------------------EGLTCLTISADSTLALSGSK--------------------D----GSVHMVNITTGKV 270 (394)
Q Consensus 237 ----------------------~~i~~~~~~~~~~~l~~g~~--------------------d----g~i~i~d~~~~~~ 270 (394)
..-...+++|+..+++.+.. | +.|.-+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 00113466677777776653 2 5899999999998
Q ss_pred EEEecc--CC--------CCEEEEEEC-CCC---CeEEEEeCCCcEEEEeCCCCCcceeccCCC----------------
Q 016187 271 VSSLVS--HT--------DSIECIGFS-RSS---PWAATGSMDQKLIIWDLQHSLPRSTCDHED---------------- 320 (394)
Q Consensus 271 ~~~~~~--h~--------~~i~~v~~~-~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------- 320 (394)
+=.++. |. .++. +... .++ ..++.++.+|.+.++|..+...........
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 766542 32 1222 1221 456 378889999999999987654332110000
Q ss_pred ------------------C------------EEEEEEeCCCCEEEEEe--------------------------------
Q 016187 321 ------------------G------------VTCLMWLGTSKYVVTGC-------------------------------- 338 (394)
Q Consensus 321 ------------------~------------v~~~~~~~~~~~l~sg~-------------------------------- 338 (394)
. ...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0 01235555554444432
Q ss_pred -CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 339 -VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 339 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+|.|+.||+.+++.+-++.... ++..-.+...+.+++.++.||.++.||.++-
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 36889999999999887766432 3322222234677888999999999998754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-05 Score=70.40 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=134.0
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.....++|+|.++.++.+-...+.|+.+++........+.........+++.+.+.. +++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 457899999877778777777889999998766544434333345678999986554 4565667889999987554333
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEecCC-CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcC
Q 016187 144 TLEGPGGGVEWVSWHPRGH-IVLAGSED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP 220 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~-~l~~~s~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 220 (394)
.+.........+++.|.+. ++++-... +.|...++............-.....++++|++..|..+ ...+.|..+|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 3333445678899998655 44554455 788888876543333222234457889999876666544 45678999997
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
........+... ......+++ .++.++++-...+.|..++..+|+.+..+.
T Consensus 233 dG~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 233 DGSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TSCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEEeCC---CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 643332223221 223556666 356666777777888888866665544443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-05 Score=69.08 Aligned_cols=220 Identities=9% Similarity=0.023 Sum_probs=140.2
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~ 137 (394)
....+.+|+|++.++.+..+-...+.|+.+++... .....+.........+++.+.+ +++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34577899999877777777677788888887652 2233333344567899999854 455555667899999987
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEec-C-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCc
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT 214 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~ 214 (394)
.......+.........+++.|.+..|+... . .+.|+..++............-.....+++++++..|..+ ...+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 6554444444445678899999665554433 2 3678888887554333333334567899999877777655 45678
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
|...|+........+... ........+++. .+.++++....+.|..+|..+|+.+..+.........+
T Consensus 270 I~~~d~dG~~~~~~~~~~-~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDE-KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEEETTSCCCEEEEECS-STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEeCCCCccEEEEeCC-CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence 999998654333232221 112234566663 45666777778899999987777666554433334444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=5e-05 Score=68.36 Aligned_cols=242 Identities=8% Similarity=-0.047 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeec
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
.+|.+..+++ +|+.+ ....|+..++........+. ....+..++|++... ++++-...+.|+.++.........+.
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 3455555533 33333 34568888877655544443 334578899997655 44555667889999987665433333
Q ss_pred ccCcCeEEEEECCCCCe-EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCC-CcEEEEEC
Q 016187 189 GHGSSVTCGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKD-GSVHMVNI 265 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~d-g~i~i~d~ 265 (394)
........+++.+.+.. .++-...+.|.+.++........+.. .......++++|.+. ++++-... +.|..+++
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---TCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---CCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 23334567889875544 45656678899999865433322221 123467899998555 44554455 78998888
Q ss_pred CCCcEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKV 343 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i 343 (394)
............-...+.++++|++..|..+ ...++|..+++.....+... ........+++. .+...++-...+.|
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 6543222222233467899999876655554 45678999998754333222 122345666663 44555566677889
Q ss_pred EEEECCCCeEEEEee
Q 016187 344 RVWDSLSGDCVRTFS 358 (394)
Q Consensus 344 ~iwd~~~~~~~~~~~ 358 (394)
..++..+|+.+..+.
T Consensus 269 ~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 269 NSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEEccCCCccEEec
Confidence 999877777666655
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=0.00023 Score=69.03 Aligned_cols=323 Identities=10% Similarity=-0.013 Sum_probs=180.8
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee-eEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCce
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~-~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~ 141 (394)
-....+|++++.++.++.+=...+.|+.+++..... ...+..-......|++.+.+..|+ +-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345678999997777777766778888888865432 233333335688999999666554 555678999999875543
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEE
Q 016187 142 KCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVW 218 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vw 218 (394)
...+...-.....+++.|.+..|+... ..+.|...++............-.....+++.++++.|..+ ...+.|...
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 333333444566789998755444433 24567766766543333333334567889999976666544 456789999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE-----------------
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI----------------- 281 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i----------------- 281 (394)
|+........+.+...+ ...+++..+ .++++-...+.|...|..+++....+.......
T Consensus 199 ~~dG~~~~~~~~~~~~~---P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~ 274 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPH---PFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 274 (619)
T ss_dssp SSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCT
T ss_pred cCCCCccEEEEeCCCCC---ceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccc
Confidence 88643322222211112 234566655 555666677889999987765333221110000
Q ss_pred ----------EEEE---------ECC-------C--------CCeEEEEeCCCcEEEEeCCCCCcce---eccCCCCEEE
Q 016187 282 ----------ECIG---------FSR-------S--------SPWAATGSMDQKLIIWDLQHSLPRS---TCDHEDGVTC 324 (394)
Q Consensus 282 ----------~~v~---------~~~-------~--------~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~v~~ 324 (394)
.|+. ..| + .++|+.+. .+.|+..++....... ....-..+..
T Consensus 275 C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ 353 (619)
T 3s94_A 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIA 353 (619)
T ss_dssp TTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEE
T ss_pred ccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEE
Confidence 1110 011 1 11222222 3345555554332111 1111234678
Q ss_pred EEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEEecc
Q 016187 325 LMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 325 ~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw~~~ 391 (394)
++|.+....|.-+ ...+.|+.++.........+...-.....|++.+ .++++.+-+..+.|.+.+++
T Consensus 354 ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~ 422 (619)
T 3s94_A 354 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN 422 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence 8999865555544 4578899998765443333333334567899986 44555665667778777654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-05 Score=66.84 Aligned_cols=202 Identities=13% Similarity=0.216 Sum_probs=133.3
Q ss_pred eecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.+..+.- .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4566667899999999876555 46678889999987 887777642 23568889999888877776677889988865
Q ss_pred ccce---eeeec------ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC---CCceEEEEcC----CCCcccCeEEEE
Q 016187 180 RAAY---LNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK---SGENIHVIRG----HPYHTEGLTCLT 243 (394)
Q Consensus 180 ~~~~---~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~----~~~~~~~i~~~~ 243 (394)
.... +.... ......-.++|.|.++.|+++.......+|.+. ....+..+.. .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 4321 12211 123445789999998887777665555555543 1122222211 111234567889
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCC---------CCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 244 ISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 244 ~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---------~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
++|. +++++....+..|..+|.. ++++..+.-.. ...+.|+|.+++.+.++ +..+.+..|.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 9985 4566677778889999975 55655543221 36789999999985444 6666665554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-05 Score=68.36 Aligned_cols=209 Identities=9% Similarity=0.006 Sum_probs=130.8
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC----CeeeEeecCcccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSS 138 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~----~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~ 138 (394)
-....+++|++.++.++.+-...+.|+.+++.. ......+.........+++++.+.. +++-...+.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 345678999987777877777889999998865 2222223333345678999875554 45556778999999875
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEec-CC-CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATL 215 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i 215 (394)
......+.........+++.|.+..++.+. .. +.|...++............-.....++++|++..|..+ +..+.|
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 443333333445678999998665444433 33 688888876443222222233467789999977766554 456789
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
..+|+.... ...+............+++. .+.++++-...+.|..++..+++.+..+
T Consensus 189 ~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 189 SSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 999986433 23332111112234566665 4667777777889999998777655444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-05 Score=71.10 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=134.6
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.....++|+|.++.++.+-...+.|+.+++........+.........+++++.+.. +++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789999877778777777889999998766544444333345567899986554 4555667788888876544433
Q ss_pred EEecCCCCEEEEEEcCCCCEE-EEecCC-CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIV-LAGSED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP 220 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l-~~~s~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 220 (394)
.+.........+++.|.+..| ++-... +.|+.+++............-.....++|+|++..|..+ +..+.|..+|+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 344344567889999876544 444444 788888876544333333334457889999876666544 55678999998
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
........+... ......+++ ..+.++++....+.|..++..+++.+..+.
T Consensus 276 dG~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 276 DGSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TSCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCeeEEEEECC---CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 644333333221 223566677 455677777778889888876776555543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-05 Score=73.51 Aligned_cols=236 Identities=9% Similarity=0.101 Sum_probs=138.8
Q ss_pred EEEEEEcC-CCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCc
Q 016187 67 VYSVACSP-TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG----LVQIWDPSSGN 140 (394)
Q Consensus 67 v~~~~~~p-~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~----~i~vwd~~~~~ 140 (394)
-..|+++| .++.+.++-.. +.|+.+++..+....... .......|+|+++|++|+.+.. ++ .+.+.+ ..+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 46788998 35555555433 788889987766544333 4456889999999996666654 22 233333 2332
Q ss_pred eE--EEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEECCCCCeE-EEEeCCCcE
Q 016187 141 LK--CTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTI-CTGSDDATL 215 (394)
Q Consensus 141 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~dg~i 215 (394)
.. ..+.. ......++++| ++.++++-...+.|+.++...+....... +.......++|+|+|++| ++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 22 22221 22345688999 67777777778899999987655322221 122346789999999955 455567889
Q ss_pred EEEcCCC--Cce--EEEEcCC---CC---------cccCeE-EEEEc--------CCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 216 RVWNPKS--GEN--IHVIRGH---PY---------HTEGLT-CLTIS--------ADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 216 ~vwd~~~--~~~--~~~~~~~---~~---------~~~~i~-~~~~~--------~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
..++... ++. +..+.+. .. .-.... .+.+. +++.++++-...+.|+.++ ..++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 8877542 211 1222211 00 011123 34553 4567777777788899998 35543
Q ss_pred EEEecc----C-------------CCCEEEEEECCC-CCeEEEEeCCCcEEEEeC
Q 016187 271 VSSLVS----H-------------TDSIECIGFSRS-SPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 271 ~~~~~~----h-------------~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~ 307 (394)
....-. . -.....++++|+ +.++++-...++|+.+++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 322211 0 114678889884 555555555667776654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.1e-05 Score=67.64 Aligned_cols=252 Identities=8% Similarity=-0.050 Sum_probs=153.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecc
Q 016187 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 111 ~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
.|.+..+.+ +|+.+ ....|+..++..+.....+. ....+..++|.+.+. ++++-...+.|+.++.........+..
T Consensus 80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 344445533 44333 34678888887766554444 344578899997655 555656778999999876654333332
Q ss_pred cCcCeEEEEECCCCCe-EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE-EEeCC-CcEEEEECC
Q 016187 190 HGSSVTCGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKD-GSVHMVNIT 266 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~g~~d-g~i~i~d~~ 266 (394)
.......+++.+.+.. .++-...+.|.+.++........+.. .......++++|.+..++ +-... +.|..+++.
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~---~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS---SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC---CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3334567888875554 45556677899988765433322221 123567889998665544 44444 788888886
Q ss_pred CCcEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 267 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
...........-...+.++++|++..|..+ +..++|..+++.....+.... .......+++. .+...++-...+.|.
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 312 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence 543222222334467899999876655544 456789999986543332221 22345667763 445556666788999
Q ss_pred EEECCCCeEEEEeecccCceeEEEE
Q 016187 345 VWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 345 iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
.++..+|+.+..+...-.....|++
T Consensus 313 ~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 313 SANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEECCCCcceEEEccCCCCCceEEE
Confidence 9997788777766543333344443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-05 Score=65.43 Aligned_cols=202 Identities=13% Similarity=0.130 Sum_probs=130.8
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee--cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~--~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
+.|-.+.+..+++.|+++.++|....++.|...|.. ++.+..+ .+. .....|++.+++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445567899999999877788877788889888987 7777765 332 457788899998877776677888888865
Q ss_pred CCce---EEEEe------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---cceeeee-------cccCcCeEEEE
Q 016187 138 SGNL---KCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMF-------SGHGSSVTCGD 198 (394)
Q Consensus 138 ~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---~~~~~~~-------~~h~~~v~~~~ 198 (394)
.... ..... ........++|.|.++.|+++.......+|.... ...+... ..+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 4432 22221 1234578999999987776666554444444321 1111111 11234567899
Q ss_pred ECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC-c-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 199 FTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY-H-----TEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 199 ~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~-----~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
++|. +++++.....+.|.++|.. ++.+..+..... + ....-.+++.++|+++++ ++-..++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9995 4556666677888999965 555554443211 0 124567899999986666 55566666643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-06 Score=84.95 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=113.4
Q ss_pred Cccc-CEEEEEEc-CCCCEEEEEe-CCC----cEEEEeCCCC-ceEE-EEecCCCCEEEEEEcCCCCEEEEecCC-----
Q 016187 105 GHKD-SVSSLAFS-MDGQLLASGG-LDG----LVQIWDPSSG-NLKC-TLEGPGGGVEWVSWHPRGHIVLAGSED----- 170 (394)
Q Consensus 105 ~h~~-~V~~v~~s-~~g~~l~t~s-~d~----~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d----- 170 (394)
+|.- .+...+|| |||++||-+. .+| +|+++|+.++ +.+. .+.. ....++|+|+++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 68889999 9999887443 333 4999999988 6321 1111 12347899999877666654
Q ss_pred CeEEEEeCCccce--eeeec-ccCcCeEEEEECCCCCeEEEEeC---CCcEEEEcCCCCc-eE--EEEcCCCCcccCeEE
Q 016187 171 STVWMWNADRAAY--LNMFS-GHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGE-NI--HVIRGHPYHTEGLTC 241 (394)
Q Consensus 171 ~~i~iw~~~~~~~--~~~~~-~h~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~~~~~~~~~~i~~ 241 (394)
..|+.+++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+... ......+
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s 324 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYD 324 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEE
Confidence 3678888876532 12222 22334567899999998876553 3458888887652 22 333221 1233344
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEE-eccCCC--CEEEEEECCCCCeEEEEeCCCcE--EEEeC
Q 016187 242 LTISADSTLALSGSKD----GSVHMVNITTGKVVSS-LVSHTD--SIECIGFSRSSPWAATGSMDQKL--IIWDL 307 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~-~~~h~~--~i~~v~~~~~~~~l~s~s~dg~i--~iwd~ 307 (394)
+.++..+.+++....+ ..|..+++.++..... +..+.. .+..+.+. .+.++++...++.. .++++
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4444444555555443 3677777764221122 233433 34555555 23455666777764 45564
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-05 Score=70.10 Aligned_cols=236 Identities=11% Similarity=0.137 Sum_probs=139.4
Q ss_pred EEEEEEcCC--CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---Cc-EEEEeCCCCc
Q 016187 67 VYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GL-VQIWDPSSGN 140 (394)
Q Consensus 67 v~~~~~~p~--~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~-i~vwd~~~~~ 140 (394)
-..|+++|+ ++.++++-.. +.|+.++..+++..... ........++|+++|+++++-... .. +...+...+.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 468899984 4555554333 88999998777765443 344568899999999955444321 12 3333322221
Q ss_pred e-EEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeee-c-ccCcCeEEEEECCCCCeEE-EEeCCCcE
Q 016187 141 L-KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF-S-GHGSSVTCGDFTPDGKTIC-TGSDDATL 215 (394)
Q Consensus 141 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~-s~~~dg~i 215 (394)
. ...+. .......++++| ++.++++-..++.|+.++..++.....+ . +.......++|+|++++|+ +-...+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 11121 123345678899 6777767667889999998866542222 1 1122234689999999554 44556789
Q ss_pred EEEcCC--CCce--EEEEcCC---C---------CcccCeEEEEE---------cCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 216 RVWNPK--SGEN--IHVIRGH---P---------YHTEGLTCLTI---------SADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 216 ~vwd~~--~~~~--~~~~~~~---~---------~~~~~i~~~~~---------~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
+.++.. ++.. ...+.+. . ..-.....+++ .+++.++++-...+.|+.++. ++..
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 987754 2321 1122211 0 01123566888 778888888888899999985 5543
Q ss_pred EEEeccC------------------CCCEEEEEEC-CCCCeEEEEeCCCcEEEEeC
Q 016187 271 VSSLVSH------------------TDSIECIGFS-RSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 271 ~~~~~~h------------------~~~i~~v~~~-~~~~~l~s~s~dg~i~iwd~ 307 (394)
. ++.+. -.....|+++ +++.++++-...++|+.+++
T Consensus 377 ~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 377 T-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp E-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred E-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 3 33211 1236678888 55555555555667776654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00028 Score=62.48 Aligned_cols=225 Identities=11% Similarity=0.003 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCc----cceeeeecccCcCeEEEEECCC
Q 016187 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~ 202 (394)
...|+..|+.+.+....+. .......++|++.+. ++++-...+.|+.++... ......+...-..+..+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3568889988877655444 345678899998654 556666678999999875 2222222222234578889875
Q ss_pred CCeE-EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCcEEEEe-ccCC
Q 016187 203 GKTI-CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KD-GSVHMVNITTGKVVSSL-VSHT 278 (394)
Q Consensus 203 ~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~d-g~i~i~d~~~~~~~~~~-~~h~ 278 (394)
+..| ++-...+.|.+.++........+.. .......++++|.+..++.+. .. +.|..+++.... ...+ ...-
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~ 163 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI 163 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEEC---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCC
Confidence 5544 5556678999999865433222221 123567899998665554443 33 788888875432 2222 2233
Q ss_pred CCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 279 DSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
...+.+++++++..|..+. ..++|..+|+.....+.... .......+++. .+...++-...+.|..++..+++.+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 5678999998776665554 56789999987543333221 12335666765 3555566667789999998788766
Q ss_pred EEee
Q 016187 355 RTFS 358 (394)
Q Consensus 355 ~~~~ 358 (394)
..+.
T Consensus 243 ~~i~ 246 (316)
T 1ijq_A 243 NLLA 246 (316)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00037 Score=61.99 Aligned_cols=267 Identities=11% Similarity=0.023 Sum_probs=149.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
...+.+|.|.+.+..++. +..+.|.. ....|+.-..+. .....+..+.|.+ +..++ ++..+.|+. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 346899999888887774 45665533 333343211111 1234688899886 44444 445565544 233232
Q ss_pred eeeeec---ccCcCeEEEEECCCCCeEEEEeCCCcE-EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 183 YLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATL-RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 183 ~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
.-.... .+...+..+.+.++++.++.+. +|.| +-.| .++....+... ....+..+.+.+++.+++++...+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~--~~~~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQE--AIGVMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECS--CCCCEEEEEECTTSCEEEEETTSS
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecC--CCcceEEEEEcCCCcEEEEECCCc
Confidence 211111 2234566777776666666554 5544 3333 34444444321 234688899999988887765544
Q ss_pred cEEEEEC--CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC---Ccce-e-ccCCCCEEEEEEeCCC
Q 016187 259 SVHMVNI--TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS---LPRS-T-CDHEDGVTCLMWLGTS 331 (394)
Q Consensus 259 ~i~i~d~--~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~-~-~~~~~~v~~~~~~~~~ 331 (394)
..+-.|- .+-+.+. ......+..+.+.+++.+++ ++.+|.+.+.+.... .... . ......+..+++.+++
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 4444442 2333332 23456788899999887654 445777776632111 1111 0 1123458888888877
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEee---cccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFS---GHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
..++++ .+|.| ++....|+.-..+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 262 ~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 766655 46766 34444454444443 234567889887554 466778899877665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.3e-05 Score=69.31 Aligned_cols=153 Identities=7% Similarity=0.108 Sum_probs=97.6
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC-CC----eEEEEeCCccc
Q 016187 109 SVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS----TVWMWNADRAA 182 (394)
Q Consensus 109 ~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~----~i~iw~~~~~~ 182 (394)
....|+++| ++..|..+...+.|+++|+.++...... ........++|+++++.|+.+.. .+ .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457899998 4556666655588999998876654433 34556889999999995544443 22 2333333 222
Q ss_pred ee--eeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCC
Q 016187 183 YL--NMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDG 258 (394)
Q Consensus 183 ~~--~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg 258 (394)
.. ..+. .......++++| +|.++++-..++.|..+++..+......... .......++++|+++ ++++-...+
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~--~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ--DSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS--SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC--CCCcceeEEEcCCCCEEEEEECCCC
Confidence 21 2222 123345778999 6776667667889999998766532222211 123467899999999 555566778
Q ss_pred cEEEEECC
Q 016187 259 SVHMVNIT 266 (394)
Q Consensus 259 ~i~i~d~~ 266 (394)
.|..++..
T Consensus 293 ~I~~~~~d 300 (430)
T 3tc9_A 293 YILRSDYD 300 (430)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeCC
Confidence 99998765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00062 Score=62.37 Aligned_cols=233 Identities=11% Similarity=-0.015 Sum_probs=145.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcc----ceeeeecccCcCeE
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVT 195 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~ 195 (394)
+|+.+ ....|+..++........+. ....+..++|++.+. ++++-...+.|+.+++... .....+......+.
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 44433 34678888888766554443 345678899998655 4455556788988888652 22223332344667
Q ss_pred EEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCcEEE
Q 016187 196 CGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-K-DGSVHMVNITTGKVVS 272 (394)
Q Consensus 196 ~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~-dg~i~i~d~~~~~~~~ 272 (394)
.+++.+. +++.++-...+.|.+.++........+.. .......++++|.+..++... . .+.|...++.......
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 8899884 44555656678899999875543333321 223477899999665555443 2 4789999986543332
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.....-...+.|++++++..|..+. ..++|..+|+.....+.... .......++.. .+..+.+-...+.|..+|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 2333335788999998777666554 46789999987544333321 12234566663 3345556667788999998
Q ss_pred CCCeEEEEeec
Q 016187 349 LSGDCVRTFSG 359 (394)
Q Consensus 349 ~~~~~~~~~~~ 359 (394)
.+|+.+..+..
T Consensus 319 ~~G~~~~~i~~ 329 (400)
T 3p5b_L 319 LTGSDVNLLAE 329 (400)
T ss_dssp SSCCCCEEEEC
T ss_pred CCCCceEEEec
Confidence 88877666653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00015 Score=67.22 Aligned_cols=236 Identities=11% Similarity=0.075 Sum_probs=137.4
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---Ce-EEEEeCCccc
Q 016187 109 SVSSLAFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---ST-VWMWNADRAA 182 (394)
Q Consensus 109 ~V~~v~~s~~--g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~-i~iw~~~~~~ 182 (394)
....|+|+|+ +..|..+...+.|+.+|+.++..... .........+++.++++++++.... .. +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999995 44555554448999999987776543 3345568899999999955554321 12 3333322111
Q ss_pred e-eeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCc
Q 016187 183 Y-LNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGS 259 (394)
Q Consensus 183 ~-~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~ 259 (394)
. ...+. .......+++.| +|.+.++-..++.|+.+|..++.....+.... .......++++|+++ ++++-...+.
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 1 01111 223445678999 66666666677889999988776522221111 112234699999998 5555566789
Q ss_pred EEEEECC--CCcE--EEEeccC---------------CCCEEEEEE---------CCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 260 VHMVNIT--TGKV--VSSLVSH---------------TDSIECIGF---------SRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 260 i~i~d~~--~~~~--~~~~~~h---------------~~~i~~v~~---------~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
|+.+++. +++. ...+.+. -.....+++ .+++.+.++-...++|+.++... .
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-R 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-E
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-C
Confidence 9998865 2321 0111110 123567888 77777777767778888887532 1
Q ss_pred cceeccC------------------CCCEEEEEEe-CCCCEEEEEeCCCeEEEEEC
Q 016187 312 PRSTCDH------------------EDGVTCLMWL-GTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 312 ~~~~~~~------------------~~~v~~~~~~-~~~~~l~sg~~dg~i~iwd~ 348 (394)
.....+. -.....+++. +++.++++=....+|+.++.
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 1111110 1225677777 55555555555666766653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00018 Score=67.22 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=143.5
Q ss_pred cEEEEEEcCC-CCcEEEEecCCCeEEEEEcCCCeeeEeecC---cccCEEEEEE-------cCCCCEEEEEeCCC-----
Q 016187 66 EVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAF-------SMDGQLLASGGLDG----- 129 (394)
Q Consensus 66 ~v~~~~~~p~-~~~~lasg~~d~~v~~w~~~~~~~~~~~~~---h~~~V~~v~~-------s~~g~~l~t~s~d~----- 129 (394)
.-..|+|+|. +.+++++-.....+++.|.+.+.+...+.. .......++| +++|++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999993 566666655556788888877776554433 2235899999 99999776666544
Q ss_pred --cEEEEeCCC-CceE-----EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCC-------ccce----------
Q 016187 130 --LVQIWDPSS-GNLK-----CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD-------RAAY---------- 183 (394)
Q Consensus 130 --~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~-------~~~~---------- 183 (394)
.|.+.+... +... ..+.. ......++.+|+ +.++++-...+.|+.+++. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 2221 12221 123346788994 5666777788899999987 3432
Q ss_pred -eee-ec-ccCcCeEEEEECCCCCeEE-EEeCCCcEEEEcC--CCCce--EEEEcCC---CC---------cccCeE-EE
Q 016187 184 -LNM-FS-GHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNP--KSGEN--IHVIRGH---PY---------HTEGLT-CL 242 (394)
Q Consensus 184 -~~~-~~-~h~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~--~~~~~--~~~~~~~---~~---------~~~~i~-~~ 242 (394)
... +. +.......++|+|+|++|. +=+....|+.++. .++.. ...+.+. .. .-.... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 11 2234457899999999654 4456677888554 33321 1222221 00 011233 44
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEECCCCcEEEEeccC------------------------CCCEEEEEECCC-C
Q 016187 243 TIS-------ADSTLALSGSKDGSVHMVNITTGKVVSSLVSH------------------------TDSIECIGFSRS-S 290 (394)
Q Consensus 243 ~~~-------~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------------------------~~~i~~v~~~~~-~ 290 (394)
... +++.++++-...+.|+.++ .+|. +.++-+. -.....|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 5677777778889999998 4564 3343221 023567788875 5
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 016187 291 PWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~ 310 (394)
.++++-....+|+.+++...
T Consensus 457 ~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEEETTTTEEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCC
Confidence 55555555667777776543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-05 Score=76.82 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=110.0
Q ss_pred cEEEEEEc-CCCCcEEEEecC----CCeEEEEEcCCC-eeeE-eecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 016187 66 EVYSVACS-PTDATLVATGGG----DDKGFFWRINQG-DWAS-EIQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQI 133 (394)
Q Consensus 66 ~v~~~~~~-p~~~~~lasg~~----d~~v~~w~~~~~-~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~v 133 (394)
.+...+|| |++..+..+... ..+++++++.++ +.+. .+. .....++|+|||+.|+-...+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 965543333222 235999999988 6322 121 123468899999888777665 36888
Q ss_pred EeCCCCce--EEEEecC-CCCEEEEEEcCCCCEEEEec---CCCeEEEEeCCcc--ce--eeeecccCcCeEEEEECCCC
Q 016187 134 WDPSSGNL--KCTLEGP-GGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRA--AY--LNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 134 wd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~s---~d~~i~iw~~~~~--~~--~~~~~~h~~~v~~~~~~~~~ 203 (394)
+++.++.. ...+... ......+.|+|++++|+..+ ....|+++++.++ +. ...............|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877642 2333322 23456789999999876554 2456888888764 22 22333344444555554444
Q ss_pred CeEEEEeCC----CcEEEEcCCCCceEE--EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc--EEEEEC
Q 016187 204 KTICTGSDD----ATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGS--VHMVNI 265 (394)
Q Consensus 204 ~~l~s~~~d----g~i~vwd~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~--i~i~d~ 265 (394)
.+++....+ ..|..+++.++.... .+.. . ....+..+.+. .+.++++...++. |.++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~-~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-S-EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-C-SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-C-CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 444454443 256666765422211 2221 1 11124445554 3455666677775 555665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.46 E-value=0.0002 Score=63.39 Aligned_cols=207 Identities=10% Similarity=0.007 Sum_probs=131.3
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-EeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
..+.+++|++.++.+..+-...+.|+.+++...... ..+.........+++.+.+. ++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 356789999877778777777889999988765321 12222234566899997554 4555566788999998754433
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEc
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWN 219 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd 219 (394)
..+.........+++.|.+..|+.+. ..+.|...++............-.....++++|++..|..+ +..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 33334445678899998755554443 35788888876543322222233456889999976666554 4567899999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
+........+.. .......+++. .+.++++-...+.|..++..+++....+.
T Consensus 195 ~dG~~~~~~~~~---~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 195 LDGTNRQAVVKG---SLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTSCSCEEEECS---CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEecC---CCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 864332222221 12335566665 34566666777889999987776554443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00046 Score=61.09 Aligned_cols=226 Identities=9% Similarity=-0.005 Sum_probs=136.8
Q ss_pred CCcEEEEeCCCCc--eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcccee-eeecccCcCeEEEEECCCC
Q 016187 128 DGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 128 d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~ 203 (394)
...|+..++.... ....+.+ ......+.|.+.+ .++.+-...+.|+.++....... ..+...-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 2222221 1235678999864 45566667788999988765321 1222222345678888754
Q ss_pred -CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeccCCCC
Q 016187 204 -KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--KDGSVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 204 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
++.++-...+.|.++++........+.. .......+++.|.+..++... ..+.|..+++.......-....-..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~ 167 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQ---ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECS---SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 4445556678899999865433222221 223567889998655555444 3578888887643222222222346
Q ss_pred EEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 281 IECIGFSRSSPWAATG-SMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
.+.+++++++..|..+ +..++|..+|+.....+.... .......++... +..+.+-...+.|..++..+|+.++.+.
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999876655554 456789999987543333222 223455666653 3455556677899999988887665554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0008 Score=59.82 Aligned_cols=270 Identities=9% Similarity=0.101 Sum_probs=147.2
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-eeeEe-e--cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASE-I--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-~~~~~-~--~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
...+.+|.|.+. ...++. +..+.+ ++....+ .+... + ......+.+|.|++ +..++ ++..+.|.. ....|
T Consensus 35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCC
Confidence 447889998763 455664 456665 3333333 22222 1 12344689999986 44444 455665544 22334
Q ss_pred ceEEEEec---CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 140 NLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 140 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
+.-..+.. ..+.+..+.+.+++..++++. ++.++.- .+.++ -.....+....+..+++.|++.+++.+...+..
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~ 186 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY 186 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 33222221 224577787777776666554 5544321 22222 122223445578889999998888776554444
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc----CCCCEEEEEECCCCC
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----HTDSIECIGFSRSSP 291 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----h~~~i~~v~~~~~~~ 291 (394)
+-+|- .++....+.. .....+..+.+.+++.++++ +.+|.+++.+...++.-..+.. +...+.++.+.+++.
T Consensus 187 ~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 187 STWEP-GQTAWEPHNR--TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEECT-TCSSCEEEEC--CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEeCC-CCCceeECCC--CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 55552 1233222221 12346788889998876654 4578777764333443333221 224588999998877
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+++.+. ++.+ ++.......-... .....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 263 ~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 263 VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 776654 6656 3333322111111 123456778887554 4666677898877653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00036 Score=69.43 Aligned_cols=209 Identities=9% Similarity=0.018 Sum_probs=133.5
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSS 138 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~ 138 (394)
...+.+|++++.++.++.+-...+.|+.+++... .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567889999877777777777788888887652 2233344344567789999877555 4556678999999875
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEec-CC-CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATL 215 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i 215 (394)
......+.........|++.|....|+.+. .. +.|...++........+...-.....+++.+.+..|+.+ .....|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 544434444445688999999755444433 33 678888887655444444444577899999876666555 445679
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
...++........+.... .......|++.. +.++++-...+.|...|..+++.+..+
T Consensus 583 ~~~d~dG~~~~~v~~~~~-~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEK-RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTSCSCEEEEECTT-TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCceEEEecCCC-ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 999986544333333211 112345666643 356666667788888887777655544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0028 Score=61.46 Aligned_cols=325 Identities=7% Similarity=-0.045 Sum_probs=170.3
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLK 142 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~--d~~i~vwd~~~~~~~ 142 (394)
.....||+.+.++++..+-...+.|.+.++........+.........|++.|.+.+|+-... .+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 567899999877777777788899999998654333333344556788999997665554442 356666666543333
Q ss_pred EEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
..+...-.....+++.+.+..| ++=...+.|...++..........+.......+++..+ ...++-...+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 3333344567889999875544 44455678888887654332222211122234455444 333343445566666655
Q ss_pred CCceEEEEcC-----------CC---------C-----------------------------------------------
Q 016187 222 SGENIHVIRG-----------HP---------Y----------------------------------------------- 234 (394)
Q Consensus 222 ~~~~~~~~~~-----------~~---------~----------------------------------------------- 234 (394)
+++....+.. |+ .
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 4432211110 00 0
Q ss_pred ------------------------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 235 ------------------------HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 235 ------------------------~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
....+..+++.+. +.++++-...+.|+.+++........+...-.....+++.+.
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 0001122222221 112222222333333333221111111111234567888764
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeEEEEe-ecccCce
Q 016187 290 SP-WAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGC--VDGKVRVWDSLSGDCVRTF-SGHRDAI 364 (394)
Q Consensus 290 ~~-~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~-~~h~~~v 364 (394)
+. +..+-+..++|.+.++.......... .-.....+++.|...+|.-.. ..+.|...+.. |.....+ ...-..-
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P 481 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWP 481 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCE
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCC
Confidence 44 44555567788888887654333322 234578899998755554443 23667766654 3333333 2223456
Q ss_pred eEEEEccCCCEEEEE-eCCCcEEEEecc
Q 016187 365 QAISVSAHQDFLVSV-SLDGTARVFEIA 391 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~-s~dg~i~iw~~~ 391 (394)
+.|++.+++..|.-+ +..+.|..+++.
T Consensus 482 ~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 482 NGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred eeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 789999866655544 445667777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.003 Score=62.84 Aligned_cols=227 Identities=11% Similarity=-0.008 Sum_probs=139.9
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcc----ceeeeecccCcCeEEEEECC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~ 201 (394)
....|+..++...+....+. ....+..++|.+.. .++++-...+.|+.+++... .....+......+..+++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 44578888887665544443 34567889999854 45556666788988888653 22233332334566889988
Q ss_pred CCCeE-EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCcEEEEeccCC
Q 016187 202 DGKTI-CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KD-GSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 202 ~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~h~ 278 (394)
.++.| ++-...+.|.+.++........+.. .......|++.|....|+... .. +.|...++........+...-
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 76554 5556678899999875443333221 223478899999755554443 33 789999986554433333334
Q ss_pred CCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 279 DSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.....|++++....|+.+. ..++|..+++.......... .-.....|+...+ .+.++-...+.|...|..+|+.+
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence 5788999998776666554 45678888886554333321 1123446665433 44445556788888888888766
Q ss_pred EEee
Q 016187 355 RTFS 358 (394)
Q Consensus 355 ~~~~ 358 (394)
..+.
T Consensus 637 ~~l~ 640 (791)
T 3m0c_C 637 NLLA 640 (791)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00083 Score=62.69 Aligned_cols=236 Identities=11% Similarity=0.135 Sum_probs=142.9
Q ss_pred CEEEEEEcCC-C-CEEEEecCCCeEEEEeCCccceeeeeccc---CcCeEEEEE-------CCCCCeEEEEeCCC-----
Q 016187 151 GVEWVSWHPR-G-HIVLAGSEDSTVWMWNADRAAYLNMFSGH---GSSVTCGDF-------TPDGKTICTGSDDA----- 213 (394)
Q Consensus 151 ~v~~~~~~~~-~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~l~s~~~dg----- 213 (394)
....++|.|. . +++++-...+.|++.|..++......... ......++| +++|++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999984 4 44455444567888998876655443321 235788999 99999666665543
Q ss_pred --cEEEEcCCC-CceE-----EEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-------CCcE-------
Q 016187 214 --TLRVWNPKS-GENI-----HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT-------TGKV------- 270 (394)
Q Consensus 214 --~i~vwd~~~-~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~-------~~~~------- 270 (394)
.|.+.+... +... ..+.. -.....++++| ++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeecc----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665333 1110 12211 11244678899 55666677788889999987 4543
Q ss_pred ----EEEe--ccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCC-----cceecc------CC---------CCEE
Q 016187 271 ----VSSL--VSHTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSL-----PRSTCD------HE---------DGVT 323 (394)
Q Consensus 271 ----~~~~--~~h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~-----~~~~~~------~~---------~~v~ 323 (394)
+..+ .........++|+|++.+|. +-+..++|+.++..... +....+ .. ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2221 12234567899999999544 44566788886543211 011111 00 1233
Q ss_pred -EEEEe-------CCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc------------------------CceeEEEEcc
Q 016187 324 -CLMWL-------GTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR------------------------DAIQAISVSA 371 (394)
Q Consensus 324 -~~~~~-------~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------------------------~~v~~l~~~~ 371 (394)
.++.. +++.+.++=....+|+.++ .+|. +.++.|.. ..-..|++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 33443 4566666667788999998 4664 44554321 1246899999
Q ss_pred C-CCEEEEEeCCCcEEEEeccC
Q 016187 372 H-QDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 372 ~-~~~l~s~s~dg~i~iw~~~~ 392 (394)
+ +.++++=.....||.++++.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEeCCCCEEEEEECCC
Confidence 6 78877778889999998763
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00086 Score=58.77 Aligned_cols=155 Identities=11% Similarity=0.055 Sum_probs=108.6
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE-eecC----cc--cCEEEEEE---cCCCCEEEEEe------------
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQG----HK--DSVSSLAF---SMDGQLLASGG------------ 126 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~-~~~~----h~--~~V~~v~~---s~~g~~l~t~s------------ 126 (394)
+++|++.++.++.+.-..++|..|+...+.... .+.+ .. ..+..|.| .|+|+++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 568888777777776688999999987553322 3332 11 13579999 68887777543
Q ss_pred -CCCcEEEEeCC---CCceEEEEec-------------CCCCEEEEEEcCCCCEEEEecCC-CeEEEEeCCccceeeee-
Q 016187 127 -LDGLVQIWDPS---SGNLKCTLEG-------------PGGGVEWVSWHPRGHIVLAGSED-STVWMWNADRAAYLNMF- 187 (394)
Q Consensus 127 -~d~~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~s~d-~~i~iw~~~~~~~~~~~- 187 (394)
.+..|..+|+. +++.+..... .......++..++|+..++++.- +.|...+.........+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 26779999998 7776544431 12347889999999999998888 88888877654322111
Q ss_pred ----cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC
Q 016187 188 ----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 188 ----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 223 (394)
.......+.++++|+|++|+.....|.|..+|+.+.
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 111223568999999999888877999999998743
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=80.50 Aligned_cols=218 Identities=10% Similarity=0.030 Sum_probs=125.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCC----CeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~----~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~ 140 (394)
.+.+|+|+|.++.++.+-...+.|+.+++.. ......+.........|++.+.+ .++++-...+.|.+.++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 4567788886666766666678888888764 22222222222335578888654 444555567889999987554
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEec-CC-CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EEEeCCCcEEE
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRV 217 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~v 217 (394)
....+.........+++.|.+..|+.+. .. +.|..+++............-.....++|+|++..| ++-+..+.|.+
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 4333332233456788888655444433 22 677777765433222222223345678999976555 45556678999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~ 285 (394)
+++..... ..+............+++..+ .++++....+.|..++..+++.+..+.........|+
T Consensus 567 ~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 567 IDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp ECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 99864332 333211111112233445443 5666667778999999888887776644333333343
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00029 Score=61.77 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=125.1
Q ss_pred CeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEEE-EcCCC--C-cccCeEEEEE---cCCCCEEEEEe---------
Q 016187 193 SVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHV-IRGHP--Y-HTEGLTCLTI---SADSTLALSGS--------- 255 (394)
Q Consensus 193 ~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~-~~~~~--~-~~~~i~~~~~---~~~~~~l~~g~--------- 255 (394)
..-+.+|.+....|..+ -..++|..||...+..... +.... . ....+..+.+ .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34467898755555544 4799999999875543332 11100 0 0113568889 68888877644
Q ss_pred ----CCCcEEEEECC---CCcEEEEec--cC-----------CCCEEEEEECCCCCeEEEEeCC-CcEEEEeCCCCCcce
Q 016187 256 ----KDGSVHMVNIT---TGKVVSSLV--SH-----------TDSIECIGFSRSSPWAATGSMD-QKLIIWDLQHSLPRS 314 (394)
Q Consensus 256 ----~dg~i~i~d~~---~~~~~~~~~--~h-----------~~~i~~v~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~ 314 (394)
.+..|..+|+. +++.+.... .. ......++..++|...++++.. +.|..++........
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 26789999998 776554332 11 1247899999999998888887 777776665432221
Q ss_pred ec------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE--EEEee--cc---cCceeEE-EEccCCCE-EEEE
Q 016187 315 TC------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC--VRTFS--GH---RDAIQAI-SVSAHQDF-LVSV 379 (394)
Q Consensus 315 ~~------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~--~h---~~~v~~l-~~~~~~~~-l~s~ 379 (394)
.. ......+.+++.|++..|++....|.|..+|+.+... +. .. |. -.....| ..-.+++. |++.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEc
Confidence 11 1122367899999999888887799999999875433 21 21 22 1123343 33457777 5566
Q ss_pred eCCCcEEEEeccCC
Q 016187 380 SLDGTARVFEIADF 393 (394)
Q Consensus 380 s~dg~i~iw~~~~~ 393 (394)
+..+.+.+.+-+.|
T Consensus 253 ~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 253 RAPYAISFRSWDNW 266 (334)
T ss_dssp ETTEEEEEECSSTT
T ss_pred CCCCEEEEECCCCc
Confidence 66777776665544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00094 Score=59.05 Aligned_cols=193 Identities=13% Similarity=0.246 Sum_probs=121.6
Q ss_pred CCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC----CCCe----EEEEeC--CCcEEEEcC--CCCceEEE
Q 016187 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP----DGKT----ICTGSD--DATLRVWNP--KSGENIHV 228 (394)
Q Consensus 161 ~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~----l~s~~~--dg~i~vwd~--~~~~~~~~ 228 (394)
..+++.....+.+.+||+ +++.++.+.. ..+..+..-| .|+. +++.-. +.+|++|++ .+++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666677889999999 6776776653 4455555554 2332 233333 578999955 4443 444
Q ss_pred EcCC--C--CcccCeEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 229 IRGH--P--YHTEGLTCLTI--SAD-ST-LALSGSKDGSVHMVNIT-------TGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 229 ~~~~--~--~~~~~i~~~~~--~~~-~~-~l~~g~~dg~i~i~d~~-------~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
+... + .....+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. ...+..+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 4221 1 11123344455 774 43 68888889999999882 3355666654 4578889999998999
Q ss_pred EEEeCCCcEEEEeCCCC-----Ccceec--cC-CCCEEEEEEe--CCCC-EEEEEe-CCCeEEEEECC-CCeEEEEee
Q 016187 294 ATGSMDQKLIIWDLQHS-----LPRSTC--DH-EDGVTCLMWL--GTSK-YVVTGC-VDGKVRVWDSL-SGDCVRTFS 358 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~-----~~~~~~--~~-~~~v~~~~~~--~~~~-~l~sg~-~dg~i~iwd~~-~~~~~~~~~ 358 (394)
+.+-.+.-|..++.... ...... .+ ...+..++.. ++++ ||++.+ .+.+..+||.. +.+.+.+|.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999876666664421 111111 11 2357777764 4455 677666 56799999986 677888874
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0019 Score=57.04 Aligned_cols=191 Identities=14% Similarity=0.224 Sum_probs=119.4
Q ss_pred CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC----CCCE--EE--EEeC--CCcEEEEeC--CCCceEEE
Q 016187 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM----DGQL--LA--SGGL--DGLVQIWDP--SSGNLKCT 144 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~----~g~~--l~--t~s~--d~~i~vwd~--~~~~~~~~ 144 (394)
+.+|+| ...+-+.++|+ +++.+..+.. +.+..+..-| .|+. |+ +.-. +.+|.+|++ .++. +..
T Consensus 41 s~ii~t-~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITT-NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEE-ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred cEEEEE-cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345555 45678999999 8888888764 4456665555 2322 33 3333 578999955 4444 333
Q ss_pred Eec------CC-CCEEEEEE--cCC-CC-EEEEecCCCeEEEEeCC-------ccceeeeecccCcCeEEEEECCCCCeE
Q 016187 145 LEG------PG-GGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 145 ~~~------~~-~~v~~~~~--~~~-~~-~l~~~s~d~~i~iw~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
+.. .. ..+..+++ +|. +. ++++...++.+..|.+. +.+.++.+.. .+.+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 321 11 34555777 664 43 67888888999999872 3345566554 3467778888888899
Q ss_pred EEEeCCCcEEEEcCC--C---CceEEEEcCCCCcccCeEEEEE--cCCCC-EEEEEe-CCCcEEEEECC-CCcEEEEe
Q 016187 207 CTGSDDATLRVWNPK--S---GENIHVIRGHPYHTEGLTCLTI--SADST-LALSGS-KDGSVHMVNIT-TGKVVSSL 274 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~--~---~~~~~~~~~~~~~~~~i~~~~~--~~~~~-~l~~g~-~dg~i~i~d~~-~~~~~~~~ 274 (394)
+.+-.+.-|..++.. . ++.+..+.... ....+..|++ .++++ +|++++ .+.++.+||.. +.+.+..+
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCc-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 999998777777743 2 33443332211 2234666666 45555 555554 67899999996 56666665
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=0.017 Score=60.09 Aligned_cols=315 Identities=13% Similarity=0.146 Sum_probs=168.4
Q ss_pred CCcEEEEEEcCCC-----CcEEEEecC-CCeEEEEEcCCCeeeEe--ecCcccCEEEEEEc--CCCCEEEEEeCCCcEEE
Q 016187 64 SDEVYSVACSPTD-----ATLVATGGG-DDKGFFWRINQGDWASE--IQGHKDSVSSLAFS--MDGQLLASGGLDGLVQI 133 (394)
Q Consensus 64 ~~~v~~~~~~p~~-----~~~lasg~~-d~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s--~~g~~l~t~s~d~~i~v 133 (394)
.++|.|+++.|.. ..++|.|.. |++++|+++...+.+.. +.+ .....++.+. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 4589999987632 467888885 99999999987665432 322 1233444332 23357889999998754
Q ss_pred --EeCCCCceEEE---EecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCe-EEEEECCC--CC
Q 016187 134 --WDPSSGNLKCT---LEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV-TCGDFTPD--GK 204 (394)
Q Consensus 134 --wd~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v-~~~~~~~~--~~ 204 (394)
+|..+|..... +-+ ..++.-..+...+. .+++++ +....++..+..-....+. ...+ ....|+.. .+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~--~~~v~~~~~F~se~~~~ 707 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVN--LKEVNYMCPLNSDGYPD 707 (1158)
T ss_dssp EEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBS--SSCCCEEEEECCSSSTT
T ss_pred EEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccC--hHHhceEeccCcccCCC
Confidence 45556654322 223 34555444544443 333333 4444445433221111111 1122 23346432 13
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC----------------------------
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---------------------------- 256 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---------------------------- 256 (394)
-++..+ ++.++|..+..-+.+...+ .+ -...+..++++|+.+.++.+..
T Consensus 708 g~v~~~-~~~LrI~~i~~~~~~~~~~-ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1158)
T 3ei3_A 708 SLALAN-NSTLTIGTIDEIQKLHIRT-VP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS 784 (1158)
T ss_dssp EEEEEC-SSCEEEEEECCSSSEEEEE-EE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred cEEEEc-CCceEEEEecccCCeeEEE-Ee-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence 344333 4568888764433222111 01 1223555666665554333221
Q ss_pred ---------------------CCcEEEEECCCCcEEEEecc-CCCCEEEEE---ECCC-CCeEEEEe----------CCC
Q 016187 257 ---------------------DGSVHMVNITTGKVVSSLVS-HTDSIECIG---FSRS-SPWAATGS----------MDQ 300 (394)
Q Consensus 257 ---------------------dg~i~i~d~~~~~~~~~~~~-h~~~i~~v~---~~~~-~~~l~s~s----------~dg 300 (394)
-+.|+++|..+.+.+..+.- ..+.+.+++ |..+ ..+++.|. ..|
T Consensus 785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 13577888887777665432 223344444 4333 46888775 357
Q ss_pred cEEEEeCCCCCcce--eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecccCceeEEEEccCCCEEE
Q 016187 301 KLIIWDLQHSLPRS--TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR-TFSGHRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 301 ~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~ 377 (394)
.|.+|++....... .....++|++++-.. | +|++|- ..+|++|+....+.++ ....+. .|..+.....+++++
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~ 940 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFIL 940 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEE
Confidence 89999986332221 223456788887553 4 555543 5889999987665444 111122 233334444567888
Q ss_pred EEeCCCcEEEEec
Q 016187 378 SVSLDGTARVFEI 390 (394)
Q Consensus 378 s~s~dg~i~iw~~ 390 (394)
.|..-..|.++..
T Consensus 941 vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 941 VGDLMRSVLLLAY 953 (1158)
T ss_dssp EEESSBCEEEEEE
T ss_pred EEEhhheEEEEEE
Confidence 8887777777653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-05 Score=75.70 Aligned_cols=237 Identities=10% Similarity=-0.009 Sum_probs=133.3
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEeCCc----cceeeeecccCcCeEEEEECC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~ 201 (394)
....|++.++.+.+....+.. ...+..++|.+.+..|+.+ ...+.|+.+++.. ......+......+..+++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 345788888876655433332 2345678999876655544 4567899998875 222222222222345678886
Q ss_pred CC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCcEEEEe-ccC
Q 016187 202 DG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KD-GSVHMVNITTGKVVSSL-VSH 277 (394)
Q Consensus 202 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~d-g~i~i~d~~~~~~~~~~-~~h 277 (394)
.+ +++++-...+.|.+.++........+.. .......++++|.+.+|+... .. +.|..+++.... ...+ ...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCC
Confidence 44 4445555678899999865443222221 112345678888655444433 33 788888775332 1122 122
Q ss_pred CCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceeccC---CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 278 TDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCDH---EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
-...+.|+++|++..|+ +-+..++|..+++.....+..... ......+++..+ .++++....+.|..++..+++.
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 34567899998765554 445567899999865433322211 112233444444 4455556678999999888888
Q ss_pred EEEeecccCceeEEEE
Q 016187 354 VRTFSGHRDAIQAISV 369 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~ 369 (394)
+..+.......+.|++
T Consensus 618 ~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 618 VNLLAENLLSPEDMVL 633 (699)
T ss_dssp EECCCTTCSSCCCCCB
T ss_pred eEEeecCCCCCcEEEE
Confidence 8776543223344433
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0048 Score=55.39 Aligned_cols=226 Identities=11% Similarity=0.062 Sum_probs=119.7
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECCC---CCeEEEEeC-C-----CcEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPD---GKTICTGSD-D-----ATLRV 217 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~---~~~l~s~~~-d-----g~i~v 217 (394)
.....++|.|++.++++ ...+.|++++-.+...+..+ .........++|+|+ +..|..+.. . ..|..
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 34678999999985555 55699999982221212111 112346788999998 555554433 2 56777
Q ss_pred EcCCCCc---eEEEEcCCC---CcccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCC-----------
Q 016187 218 WNPKSGE---NIHVIRGHP---YHTEGLTCLTISADSTLALSGSK-------------DGSVHMVNITT----------- 267 (394)
Q Consensus 218 wd~~~~~---~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~g~~-------------dg~i~i~d~~~----------- 267 (394)
++...+. ....+...+ ........+++.|+|.++++-+. .|+|.-++...
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 7765431 111111111 11112357899999987776432 14566666542
Q ss_pred ----CcEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCc--------EEEEeCCCC----------------CcceeccC
Q 016187 268 ----GKVVSSLVSHTDSIECIGFSR-SSPWAATGSMDQK--------LIIWDLQHS----------------LPRSTCDH 318 (394)
Q Consensus 268 ----~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s~dg~--------i~iwd~~~~----------------~~~~~~~~ 318 (394)
.+.. . .++ .....++|+| ++.+.++-...+. |.+..-... .+.....+
T Consensus 190 ~~~~~~i~-a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 190 RGARPEVY-S-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TTSCTTEE-E-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCccEE-E-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 0111 1 122 2345688999 5665554433232 333321110 01111122
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----E--EEEeecccCceeEEEEccCCCEEEEEe
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD----C--VRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~----~--~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
......++| .++.++++.-..+.|...+..... . ...+-.-...+..+++.|||.++++..
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 334566776 356666666666777777654322 1 122222235788999999998777654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0012 Score=57.71 Aligned_cols=185 Identities=17% Similarity=0.230 Sum_probs=98.9
Q ss_pred CcEEEEec-CC-----CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc---
Q 016187 77 ATLVATGG-GD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN--- 140 (394)
Q Consensus 77 ~~~lasg~-~d-----~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~--- 140 (394)
+.+++.|| .+ ..+..+|+.+.++... +......-.++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 34555555 22 3577888888776542 221111122222 356677777754 468899998877
Q ss_pred eEEEEecCCC--CEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeC
Q 016187 141 LKCTLEGPGG--GVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 141 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
....-..+.. ....+. .++++++.|+.+ ..+.+||..+.+-.. .+........++.+ +++.++.|+.
T Consensus 93 W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 168 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGY 168 (301)
T ss_dssp CEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCC
Confidence 5433221111 112222 256677777643 368889987654322 11111111122222 5677777765
Q ss_pred C-----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcE
Q 016187 212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKV 270 (394)
Q Consensus 212 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~ 270 (394)
+ ..+.+||+.+++ ...+...+.......++.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 169 ~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp CSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 4 458889988764 3333322222222233333 56777777764 4689999987753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.014 Score=56.75 Aligned_cols=320 Identities=9% Similarity=-0.021 Sum_probs=183.5
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~ 143 (394)
..+.+|+|+|.++.+..+-..++.|+.+++........+..-......|++.+.+..| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4678999999888888887788999988887654444443333456789998776655 455567889999986544333
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP 220 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 220 (394)
.+...-.....+++.|....|+... ..+.|...++......... ........+++.++++.|..+ ...+.|...|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 3334445678999998654444433 2567877777655433333 234567899999977766555 45678999998
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE-------------------
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI------------------- 281 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i------------------- 281 (394)
..... ..+... ......+++.. +.++++-...+.|...|..+++....+......+
T Consensus 196 dG~~~-~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~ 270 (628)
T 4a0p_A 196 LGLNR-EVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECAS 270 (628)
T ss_dssp TSCSC-EEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTT
T ss_pred CCCce-EEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEecc
Confidence 65433 333221 22345667665 5666666678889999876664322221110000
Q ss_pred -------EEEEE--------CC-------CC-------CeEEEEeCCCcEEEEeCCCCCc-ce--eccCCCCEEEEEEeC
Q 016187 282 -------ECIGF--------SR-------SS-------PWAATGSMDQKLIIWDLQHSLP-RS--TCDHEDGVTCLMWLG 329 (394)
Q Consensus 282 -------~~v~~--------~~-------~~-------~~l~s~s~dg~i~iwd~~~~~~-~~--~~~~~~~v~~~~~~~ 329 (394)
.|+.. .| ++ .+|+.+. ...|+-..+..... .. ....-..+..++|.+
T Consensus 271 ~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~ 349 (628)
T 4a0p_A 271 SNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP 349 (628)
T ss_dssp TGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEET
T ss_pred CCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEec
Confidence 01100 11 11 1122111 22233333321110 00 111123477889988
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeEEEEeec------ccCceeEEEEccCCC-EEEEEeCCCcEEEEecc
Q 016187 330 TSKYVVTG-CVDGKVRVWDSLSGDCVRTFSG------HRDAIQAISVSAHQD-FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 330 ~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~ 391 (394)
..+.|.-. ...+.|+.++.........+.. .......|++...++ ++.+-+..+.|.+.++.
T Consensus 350 ~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 76666554 3467888887654332223322 223577899988755 44465666777776653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0082 Score=53.81 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=114.0
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EEe---cCCCCEEEEEEcCC---CCEE-EEecCC-----CeE
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLE---GPGGGVEWVSWHPR---GHIV-LAGSED-----STV 173 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--~~~---~~~~~v~~~~~~~~---~~~l-~~~s~d-----~~i 173 (394)
.....|+|.|+|+++++ ...+.|++++ +++... .+. ........++|+|+ +..| ++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999986554 5669999998 444321 111 12356789999998 4444 433322 567
Q ss_pred EEEeCCcc-----c-eeeeec---ccCcCeEEEEECCCCCeEEEEeC-------------CCcEEEEcCCCC--------
Q 016187 174 WMWNADRA-----A-YLNMFS---GHGSSVTCGDFTPDGKTICTGSD-------------DATLRVWNPKSG-------- 223 (394)
Q Consensus 174 ~iw~~~~~-----~-~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~-------- 223 (394)
..++.... + .+..+. +.......++|.|+|.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 77776532 1 112232 11112357899999976666432 145655655320
Q ss_pred ------ceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCc--------EEEEECCC----------------CcEEE
Q 016187 224 ------ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGS--------VHMVNITT----------------GKVVS 272 (394)
Q Consensus 224 ------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~--------i~i~d~~~----------------~~~~~ 272 (394)
..+... ++ .....++++| ++.++++-..... |.+..... ..++.
T Consensus 188 ~~~~~~~~i~a~-G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 188 GRRGARPEVYSL-GH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TCTTSCTTEEEE-CC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCCccEEEE-cC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 011110 10 1244578899 6666665443333 33332111 01111
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-------ceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP-------RSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.+. +......++| .++.++++.-..+.|...++..... .........+..+++.|++.+.++.
T Consensus 263 ~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 263 FWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp ECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 221 2234456666 3555555555566777666543221 1111222457777888877655554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0026 Score=55.73 Aligned_cols=224 Identities=10% Similarity=0.142 Sum_probs=115.9
Q ss_pred CcEEEEecC--CCeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceEEEEecC
Q 016187 77 ATLVATGGG--DDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 77 ~~~lasg~~--d~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d----~~i~vwd~~~~~~~~~~~~~ 148 (394)
..+++.||. ...+..||..+.++... +......-.++. .++.+++.|+.+ ..+.+||+.+.+....-..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 345555654 35678889888776542 221111222222 256677777754 57888999888765432222
Q ss_pred CCCEEEEEEcCCCCEEEEecCC------CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeC---------
Q 016187 149 GGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD--------- 211 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d------~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~--------- 211 (394)
.......+...++++++.|+.+ ..+.+||..+.+-... +........++.+ +++.++.|+.
T Consensus 90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence 2211111122256777777755 4688899876543221 1111111122222 5666666653
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEE--EeccCCCCEEEE
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVVS--SLVSHTDSIECI 284 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~--~~~~h~~~i~~v 284 (394)
-..+.+||+.+++ ...+...+........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+........++
T Consensus 168 ~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATET-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCe-EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3458899988764 3333332222222222333 56777777654 468899988765322 111111222233
Q ss_pred EECCCCCeEEEEeCC-----CcEEEEeCCC
Q 016187 285 GFSRSSPWAATGSMD-----QKLIIWDLQH 309 (394)
Q Consensus 285 ~~~~~~~~l~s~s~d-----g~i~iwd~~~ 309 (394)
.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 33 45566666643 3466666654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0021 Score=56.19 Aligned_cols=221 Identities=17% Similarity=0.234 Sum_probs=111.0
Q ss_pred cEEEEecCC----CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceEEEEe
Q 016187 78 TLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 78 ~~lasg~~d----~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~~~~~~~ 146 (394)
.+++.||.+ ..+..+|+.+.++... +......-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344555533 3467888877766542 2211111112222 56677777654 358889988876543322
Q ss_pred cCCC--CEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCC-----
Q 016187 147 GPGG--GVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD----- 212 (394)
Q Consensus 147 ~~~~--~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d----- 212 (394)
.+.. ....+. .++++++.|+.++ .+.+||+.+.+-... +........++.+ +++.++.|+.+
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence 1111 112222 2566777776543 577888776543221 1111111122222 56666666543
Q ss_pred --CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEE--eccCCCCEEE
Q 016187 213 --ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVVSS--LVSHTDSIEC 283 (394)
Q Consensus 213 --g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~--~~~h~~~i~~ 283 (394)
..+.+||+.+++ ...+...+........+.+ ++++++.|+.+ ..+.+||+.+.+-... +........+
T Consensus 171 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNE-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCc-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 358889987764 2333322222222223332 57777887754 4688999987653321 1111111122
Q ss_pred EEECCCCCeEEEEeCCC-----cEEEEeCCC
Q 016187 284 IGFSRSSPWAATGSMDQ-----KLIIWDLQH 309 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg-----~i~iwd~~~ 309 (394)
+.+ ++.+++.|+.++ .+.+||+.+
T Consensus 248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEE--CCEEEEECCcCCCcccccEEEEcCCC
Confidence 222 455666666543 367777654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.016 Score=50.93 Aligned_cols=182 Identities=12% Similarity=0.096 Sum_probs=96.1
Q ss_pred EEEEecCCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeC----C-------CcEEEEeCCCCceEEEEe
Q 016187 79 LVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGL----D-------GLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~----d-------~~i~vwd~~~~~~~~~~~ 146 (394)
++..|| ..+..||..+.++.. .+..........+...++.+++.|+. + ..+.+||+.+.+....-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 445565 578889998888754 22221122222333457788777773 1 127788988876543211
Q ss_pred cCCC--CEEEEEEcCCCCEEEEecCC--------CeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeC-C-
Q 016187 147 GPGG--GVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSD-D- 212 (394)
Q Consensus 147 ~~~~--~v~~~~~~~~~~~l~~~s~d--------~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~-d- 212 (394)
.+.. ....+. -++.+++.|+.+ ..+.+||..+.+-.. .+.........+. .+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 1111 111122 256666777632 458889987654222 1111111111222 35667777765 2
Q ss_pred ----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc
Q 016187 213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK 269 (394)
Q Consensus 213 ----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~ 269 (394)
..+.+||+.+.+ ...+...+.......++.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 468889988764 2333322222222222332 567778777654 47889988764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.052 Score=52.63 Aligned_cols=157 Identities=9% Similarity=-0.071 Sum_probs=98.0
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG--LDGLVQIWDPSSGNLK 142 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s--~d~~i~vwd~~~~~~~ 142 (394)
.....||+.+.++++..+-...+.|.+-++........+...-.....|++.|...+|+-.. ..+.|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 34567888876677777777788898888765432222334445678999999655555444 2567777777654443
Q ss_pred EEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
..+ ..-.....+++.+++..| ++=...+.|...++..... +.+.........+++.. +...++-...+.|...|..
T Consensus 160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 333 334567889999976554 4545678899999865433 23333333455666654 3444454456777777765
Q ss_pred CCc
Q 016187 222 SGE 224 (394)
Q Consensus 222 ~~~ 224 (394)
+++
T Consensus 237 tg~ 239 (628)
T 4a0p_A 237 SGQ 239 (628)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0077 Score=52.76 Aligned_cols=186 Identities=16% Similarity=0.217 Sum_probs=97.3
Q ss_pred CCcEEEEecC----CCeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeC----C-----CcEEEEeCCCCc
Q 016187 76 DATLVATGGG----DDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL----D-----GLVQIWDPSSGN 140 (394)
Q Consensus 76 ~~~~lasg~~----d~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~----d-----~~i~vwd~~~~~ 140 (394)
+..+++-||. -..+.++|..+.++... +......-..+.+ ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3445555553 23578888888776542 1111111122222 5666666665 2 468889988776
Q ss_pred eEEEEecCC--CCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeC
Q 016187 141 LKCTLEGPG--GGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 141 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
....-..+. .....+.+ ++++++.|+.+ ..+.+||..+.+-... +........++.+ +++.++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 543211111 11222222 56677777643 3678888876542221 1111111122222 5667777765
Q ss_pred C-----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcE
Q 016187 212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKV 270 (394)
Q Consensus 212 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~ 270 (394)
+ ..+.+||+.+++ ...+...+.......++.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 178 ~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp CSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 4 458889987654 2333322222222233333 67777777764 5689999987653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0067 Score=53.05 Aligned_cols=187 Identities=15% Similarity=0.249 Sum_probs=100.9
Q ss_pred CCcEEEEecCC----CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEE
Q 016187 76 DATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC 143 (394)
Q Consensus 76 ~~~~lasg~~d----~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~~~~~ 143 (394)
++.+++.||.+ ..+.++|..+.++... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 34566677654 6678889888876543 2211111222222 56677777765 468899998877654
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecC---------CCeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~---------d~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
.-..+.......+...++++++.|+. -..+.+||+.+.+-... +.........+.+ +++.++.|+.+
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence 32212111111111225666677653 34588899876543221 1111111122222 56677777654
Q ss_pred -----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 016187 213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (394)
Q Consensus 213 -----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~ 269 (394)
..+.+||+.+++ ...+...+.......++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 358889988764 3333332222223333333 67788888754 457888887754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.008 Score=52.39 Aligned_cols=187 Identities=13% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCcEEEEecCC-----CeEEEEEcCCCe---eeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 016187 76 DATLVATGGGD-----DKGFFWRINQGD---WASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN 140 (394)
Q Consensus 76 ~~~~lasg~~d-----~~v~~w~~~~~~---~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~ 140 (394)
++.+++.||.+ ..+.+||..+.+ +... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 34566667654 457889988776 5442 2221122222222 56677777654 368889988877
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCC-
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD- 212 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d- 212 (394)
....-..+.......+...++++++.|+.+ ..+.+||+.+.+-... +........++.+ +++.++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence 654322222111111122256777777654 4688899876543222 1111111122222 56677777764
Q ss_pred ----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 016187 213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (394)
Q Consensus 213 ----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~ 269 (394)
..+.+||+.+++ ...+...+.......++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 218 ~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCc-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 468899998764 3333322222222223333 56777777755 356778877654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.052 Score=48.59 Aligned_cols=237 Identities=11% Similarity=0.101 Sum_probs=125.3
Q ss_pred CEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc--eeeee----cccCcCeEEEEECCC---CCeEEEEe-C-------C
Q 016187 151 GVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA--YLNMF----SGHGSSVTCGDFTPD---GKTICTGS-D-------D 212 (394)
Q Consensus 151 ~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~--~~~~~----~~h~~~v~~~~~~~~---~~~l~s~~-~-------d 212 (394)
....++|.|+++ +++ +...+.|++++..... .+..+ .........++|+|+ +..|..+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999998 554 4567999999854321 11111 112335678999996 55554442 2 2
Q ss_pred CcEEEEcCCCCc----eEE-EEcCCCC---cccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC---
Q 016187 213 ATLRVWNPKSGE----NIH-VIRGHPY---HTEGLTCLTISADSTLALSGSK-------------DGSVHMVNITTG--- 268 (394)
Q Consensus 213 g~i~vwd~~~~~----~~~-~~~~~~~---~~~~i~~~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~--- 268 (394)
..|..|+...+. ... .+...+. .......+.|.|+|.++++-+. .|+|.-++....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 245556554321 111 1222211 1112346899999977666543 245666665432
Q ss_pred -----------cEEEEeccCCCCEEEEEECC-CCCeEEEEe-CCCcEEEEeCCCC-------------------------
Q 016187 269 -----------KVVSSLVSHTDSIECIGFSR-SSPWAATGS-MDQKLIIWDLQHS------------------------- 310 (394)
Q Consensus 269 -----------~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s-~dg~i~iwd~~~~------------------------- 310 (394)
..+.. .++ .....++|+| ++.+.++-. .++.=.|.-+...
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 00111 122 3456789999 555444322 1111122212110
Q ss_pred ------CcceeccCCCCEEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeEEEE--e-ecccCceeEEEEccCCC
Q 016187 311 ------LPRSTCDHEDGVTCLMWLG-------TSKYVVTGCVDGKVRVWDSLSGDCVRT--F-SGHRDAIQAISVSAHQD 374 (394)
Q Consensus 311 ------~~~~~~~~~~~v~~~~~~~-------~~~~l~sg~~dg~i~iwd~~~~~~~~~--~-~~h~~~v~~l~~~~~~~ 374 (394)
.+.....+...+..++|.. ++.++++.-..+.|...++..++.... + ......+..|++.|||.
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 0001112233566777764 466777766778888887766554432 2 23345788999999998
Q ss_pred EEEEEeCCCcEEEEecc
Q 016187 375 FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~ 391 (394)
++++.. +..=+||.+.
T Consensus 336 lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 336 LYVLTD-ESSGELLKVS 351 (353)
T ss_dssp EEEEEC-STTEEEEEEE
T ss_pred EEEEEe-CCCCEEEEEe
Confidence 766432 2333666653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.015 Score=50.68 Aligned_cols=185 Identities=22% Similarity=0.298 Sum_probs=98.4
Q ss_pred CCcEEEEecCC-----CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEE
Q 016187 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLKC 143 (394)
Q Consensus 76 ~~~~lasg~~d-----~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~~ 143 (394)
++.+++.||.+ ..+.+||..+.++... +......-.++.+ ++.+++.|+.++ .+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 35566667644 3578889888776543 2211111222222 567777777553 57788988776654
Q ss_pred EEecCCC--CEEEEEEcCCCCEEEEecCC-------CeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 144 TLEGPGG--GVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 144 ~~~~~~~--~v~~~~~~~~~~~l~~~s~d-------~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
.-..+.. ....+. .++++++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +++.++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 214 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD 214 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence 3221111 111222 256667776642 458889987654322 11111111122222 56777777764
Q ss_pred -----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc
Q 016187 213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK 269 (394)
Q Consensus 213 -----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~ 269 (394)
..+.+||+.+++ ...+...+........+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 368899988764 3333332222222222222 567777777553 47888887664
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.043 Score=48.13 Aligned_cols=182 Identities=13% Similarity=0.158 Sum_probs=92.2
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeC----CC-------cEEEEeCCCCceEEEEe
Q 016187 79 LVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGL----DG-------LVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~----d~-------~i~vwd~~~~~~~~~~~ 146 (394)
+++-||. .+..||..+.++... +......-...+...++.+++.|+. ++ .+.+||..+.+....-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4444443 478899888887552 2111111122233456778877873 11 17788888776543211
Q ss_pred cCC--CCEEEEEEcCCCCEEEEecCC-------CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeC----
Q 016187 147 GPG--GGVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD---- 211 (394)
Q Consensus 147 ~~~--~~v~~~~~~~~~~~l~~~s~d-------~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~---- 211 (394)
.+. .....+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+. .+++.++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSS
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCC
Confidence 111 11122222 56667777653 3577888876543221 111111111112 35666666654
Q ss_pred --CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 016187 212 --DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (394)
Q Consensus 212 --dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~ 269 (394)
-..+.+||+.+++ ...+...+.......++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 172 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CccceEEEEcCCCCE-EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 2358899988764 3333322222222222222 56777777654 346788988765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.12 Score=46.28 Aligned_cols=226 Identities=11% Similarity=0.046 Sum_probs=123.2
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECCC---CCeEEEEeC----C----CcE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPD---GKTICTGSD----D----ATL 215 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~---~~~l~s~~~----d----g~i 215 (394)
.....++|.|++.++++ ..++.|++++....+.+..+ .........++|+|+ +..|..+.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 45678999999985554 55699999874322122211 112345788999997 555554433 2 567
Q ss_pred EEEcCCCC--c---e--E-EEEcCCCCcccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 016187 216 RVWNPKSG--E---N--I-HVIRGHPYHTEGLTCLTISADSTLALSGSK-------------DGSVHMVNITTG------ 268 (394)
Q Consensus 216 ~vwd~~~~--~---~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~------ 268 (394)
..|+.... . . + ..+.....| ....+.|.|+|.++++-+. .|+|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 1 1 1 112211122 2356889999987776432 245655555321
Q ss_pred ---cEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC---cEEEEeCCCC----------------Ccceec-cCCCCEEE
Q 016187 269 ---KVVSSLVSHTDSIECIGFSR-SSPWAATGSMDQ---KLIIWDLQHS----------------LPRSTC-DHEDGVTC 324 (394)
Q Consensus 269 ---~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s~dg---~i~iwd~~~~----------------~~~~~~-~~~~~v~~ 324 (394)
..+.. .++. ....++|+| ++.+.++-...+ .|.+...... .+.... ........
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 01111 1232 345789999 566555433222 2333221100 011111 12234677
Q ss_pred EEEe-------CCCCEEEEEeCCCeEEEEECCCC-eEE--EEe-ecccCceeEEEEccCCCEEEEEe
Q 016187 325 LMWL-------GTSKYVVTGCVDGKVRVWDSLSG-DCV--RTF-SGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 325 ~~~~-------~~~~~l~sg~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
+++. .++.++++.-..+.|...+.... +.. ..+ .+-...+..+++.|||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 7773 45667777667788888887643 222 233 23345788999999998777664
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.12 Score=46.14 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred EEEEECCCCCeEEEE------------eCCCcEEEEcCCCCc-eEEEE--cCC--CCcccCeEEEEEcC--CCC--EEEE
Q 016187 195 TCGDFTPDGKTICTG------------SDDATLRVWNPKSGE-NIHVI--RGH--PYHTEGLTCLTISA--DST--LALS 253 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~------------~~dg~i~vwd~~~~~-~~~~~--~~~--~~~~~~i~~~~~~~--~~~--~l~~ 253 (394)
-.+++.|+|..++++ ..+|.|.++|+.+.. ....+ .+. ....-....+.+.+ ++. ++++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 355667776555554 268999999987421 12222 221 10112334445433 343 4455
Q ss_pred EeC--CCcEEEEECCCC-c---EEEEeccC-CCCEEEEEECCCCCeEEEEeC-----------------CCcEEEEeCCC
Q 016187 254 GSK--DGSVHMVNITTG-K---VVSSLVSH-TDSIECIGFSRSSPWAATGSM-----------------DQKLIIWDLQH 309 (394)
Q Consensus 254 g~~--dg~i~i~d~~~~-~---~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~-----------------dg~i~iwd~~~ 309 (394)
... +.++.+|++... . .+.++.+. -...+.+.+.+++.+.++... .|.|.-++..
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~- 211 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN- 211 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-
Confidence 444 567888776543 2 23344332 235789999999998887641 2345445442
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCC-CeE--EEEeecccCceeEEEEcc-CCCEEEEEeCC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLS-GDC--VRTFSGHRDAIQAISVSA-HQDFLVSVSLD 382 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d 382 (394)
........-...+.++|+|++++|..+ +..++|..|++.. ++. .+.+. ..+....+++.+ +|++.+++..+
T Consensus 212 -~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 212 -DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp -CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred -eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 222222222346889999999877665 4578999999753 332 23342 245567889998 59887766544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.15 Score=45.42 Aligned_cols=177 Identities=12% Similarity=0.092 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCC--eee-EeecC-----cccCEEEEEEcC--CCC-EEEEE-eC--CCcEEEEeCCCC--ce--EEEEe
Q 016187 85 GDDKGFFWRINQG--DWA-SEIQG-----HKDSVSSLAFSM--DGQ-LLASG-GL--DGLVQIWDPSSG--NL--KCTLE 146 (394)
Q Consensus 85 ~d~~v~~w~~~~~--~~~-~~~~~-----h~~~V~~v~~s~--~g~-~l~t~-s~--d~~i~vwd~~~~--~~--~~~~~ 146 (394)
.+|.|.++|..+. +.. ..+.+ ..-....+.+.+ +|. +|+.+ .. +.+|.+|++..+ .. +.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6889999998732 221 12222 223456677655 454 44444 33 467778776543 22 23333
Q ss_pred cC-CCCEEEEEEcCCCCEEEEec-----------------CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 147 GP-GGGVEWVSWHPRGHIVLAGS-----------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 147 ~~-~~~v~~~~~~~~~~~l~~~s-----------------~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+. -...+.+...++|.++++.. ..+.++.++.. +. +.+...-...+.++|+||+++|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEE
Confidence 32 24578899999998777754 12456556553 22 222222345688999999988765
Q ss_pred Ee-CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCC-CcEEEEEC
Q 016187 209 GS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKD-GSVHMVNI 265 (394)
Q Consensus 209 ~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~d-g~i~i~d~ 265 (394)
+. ..+.|..|++.....+...+... .....-.+++.+ +|.+.+++..+ +.|..|+.
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 54 56889999976322221111101 123456778888 58887766543 34444443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.17 Score=45.98 Aligned_cols=255 Identities=11% Similarity=0.135 Sum_probs=157.7
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
.+|.|-|+.++.....-.-. -.+.-.||..+.++.-. ..++.++|++++..++.+.-...-+. -.|-.+ +.|+.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vvf-WkWis~-~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTF-WKWISL-NTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCE-EEEEET-TEEEE
T ss_pred CeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceE-EEecCC-CeEEE
Confidence 46888888876544222211 12355688888776654 68999999999888877665444343 344432 34444
Q ss_pred EeCCCcEEEEcCCCC-ceEEEEcCCC-CcccCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCcEEEEeccCCC
Q 016187 209 GSDDATLRVWNPKSG-ENIHVIRGHP-YHTEGLTCLTISADSTLALSGS-------KDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
.+ +..|.-|++... ...+.+..++ .....|..-..+++.++++..+ -.|.+.+|+...+ .-+.+.+|..
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 199 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence 43 467999998643 3444454433 2234577777888888776432 2367888988654 3445667765
Q ss_pred CEEEEEECCCC---CeEEEEeC---CCcEEEEeCCCC------Ccceec-------cCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 280 SIECIGFSRSS---PWAATGSM---DQKLIIWDLQHS------LPRSTC-------DHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 280 ~i~~v~~~~~~---~~l~s~s~---dg~i~iwd~~~~------~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
.-..+.+..+. .+++-+.. .+++.|-++.+. ...... ...+-..++..++....+..-+.-
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~ 279 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC
Confidence 55444443221 23443433 378888888542 111110 112335577778888888889999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|-|++||+.++.++..-.--...|..-+......-++.....|.|.--.+.
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred ceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 999999999999998766556666555555555566666677766554443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.023 Score=49.78 Aligned_cols=174 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred EEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 89 GFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 89 v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d--------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
+..||..+.++... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+....-..+.......+..
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 66788888776442 2111111112222 55666666632 458899998876543222111111111222
Q ss_pred CCCCEEEEecC-C-----CeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCCC-----cEEEEcCCCCce
Q 016187 159 PRGHIVLAGSE-D-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSGEN 225 (394)
Q Consensus 159 ~~~~~l~~~s~-d-----~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~ 225 (394)
.++++++.|+. + ..+.+||..+.+-.. .+........++.+ +++.++.|+.++ .+.+||+.+++
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK- 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-
Confidence 45667777765 2 468889987654222 11111111122222 567777777654 57889988764
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCc
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--------------SVHMVNITTGK 269 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg--------------~i~i~d~~~~~ 269 (394)
...+...+.......++.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 224 W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 3333332222222223332 567777776532 35667776654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.052 Score=49.11 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC----CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---------
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--------- 182 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--------- 182 (394)
..+|..++.+- ++.||.-++......+.+..+ ...+..+..+|+|.+|+..+ +..|.+-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34555555543 466777776643333344333 33577899999999887764 4577777765211
Q ss_pred ---eeeeecc------cCcCeEEEEECCC---CCeEEEEeCCCcEEEEcCCCCce-EEEEc------CCCCcccCeEEEE
Q 016187 183 ---YLNMFSG------HGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGEN-IHVIR------GHPYHTEGLTCLT 243 (394)
Q Consensus 183 ---~~~~~~~------h~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~-~~~~~------~~~~~~~~i~~~~ 243 (394)
..+.+.- ...+|..+.|+|- +..|++-..|+.||+||+..... ...++ +.......+.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 0112221 2467999999994 56899999999999999975321 11232 1112235688999
Q ss_pred EcCCCCEEEEEe--CCCcEEEE
Q 016187 244 ISADSTLALSGS--KDGSVHMV 263 (394)
Q Consensus 244 ~~~~~~~l~~g~--~dg~i~i~ 263 (394)
|++++-.|.+.+ ..|-|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887666644 77777643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.027 Score=49.19 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=97.0
Q ss_pred CCcEEEEecC----C-----CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 016187 76 DATLVATGGG----D-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSG 139 (394)
Q Consensus 76 ~~~~lasg~~----d-----~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~ 139 (394)
++.+++.||. + ..+.++|..+.++... +......-.++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 3456666665 2 4577888888776543 2211112222223 56666766643 46888998877
Q ss_pred ceEEEEecCC--CCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEe
Q 016187 140 NLKCTLEGPG--GGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 140 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
+....-..+. .....+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+........++.+ +++.++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence 6543221111 11122222 56677777654 458888887654221 11111111222223 566777776
Q ss_pred CC-----CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 016187 211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (394)
Q Consensus 211 ~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~ 269 (394)
.+ ..+.+||+.+++ ...+...+........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 64 468899988764 3333322222222222332 56777777654 346777776654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.034 Score=45.56 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=96.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc---e--EEEEecC--CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC
Q 016187 119 GQLLASGGLDGLVQIWDPSSGN---L--KCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG 191 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~---~--~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~ 191 (394)
..+|++...| ++++=....+. . ..+-.+. =..+..++|+|++.+.++ .++.++-.+..+.... .+.+-.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccc
Confidence 4566677777 65554444443 1 1111122 236779999999886666 6777776665442111 011111
Q ss_pred cC--------eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE------EEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 192 SS--------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENI------HVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 192 ~~--------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
.. ..++.|.|+|.+.++ .||.|.-++..+...- ..+... .=..+..|.+.|+|.+.++. |
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~--gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG--GWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS--SGGGEEEEEECTTSCEEEEE--T
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC--CCCceEEEEECCCceEEEEe--C
Confidence 11 367889999988777 5699988886442211 111110 01347899999999988877 7
Q ss_pred CcEEEEECCCCc------EEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 258 GSVHMVNITTGK------VVSSL-VSHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 258 g~i~i~d~~~~~------~~~~~-~~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
+.+.-....++. ....+ ...-..-.-+.|.+++.+.+.. ++.+
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 776544333211 00111 1122233446688988877666 6643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.077 Score=43.48 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=81.2
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce------EEEEe--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL------KCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
..++.++|+|+|.+.+. .++.+.--+..+... -..+- +-. ....+.|.|++.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999987766 677777767654211 11111 111 2467899999998877 66999888763
Q ss_pred cccee-------eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc------eEEEEcCCCCcccCeEEEEEcC
Q 016187 180 RAAYL-------NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE------NIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 180 ~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
+.... +.-.+--..+..+.|.|+|.+-+.. |+.+.-+...++. ....+.....+ ..+.+.+.+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~--~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD--TFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG--GEEEEEECT
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc--eEEEEEECC
Confidence 32111 0001112467889999999877666 7776444333221 01111111111 234456777
Q ss_pred CCCEEEEEeCCCcE
Q 016187 247 DSTLALSGSKDGSV 260 (394)
Q Consensus 247 ~~~~l~~g~~dg~i 260 (394)
++.+.++. ++.+
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 77766655 5533
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.24 Score=44.89 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK----------- 269 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----------- 269 (394)
+|..++.+- ++.||.-++..+..-+.++... ..-..+..+..+|+|.+++..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444433 3667766665443444444321 1122467799999999998875 4688888886321
Q ss_pred -EEEEecc------CCCCEEEEEECCC---CCeEEEEeCCCcEEEEeCCCCCccee--------c---cCCCCEEEEEEe
Q 016187 270 -VVSSLVS------HTDSIECIGFSRS---SPWAATGSMDQKLIIWDLQHSLPRST--------C---DHEDGVTCLMWL 328 (394)
Q Consensus 270 -~~~~~~~------h~~~i~~v~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~--------~---~~~~~v~~~~~~ 328 (394)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+........ . .....|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1222221 2467999999996 45799999999999999976321110 1 122568899999
Q ss_pred CCCCEEEEEe--CCCeEEEE
Q 016187 329 GTSKYVVTGC--VDGKVRVW 346 (394)
Q Consensus 329 ~~~~~l~sg~--~dg~i~iw 346 (394)
+++-.|...+ ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 88998765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.052 Score=48.46 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=47.2
Q ss_pred CCcEEEEecC-CCeEEEEEcCC--CeeeEe--ec-CcccCEEEEEEcCCCCEEEEEeC-C---------CcEEEEeCCCC
Q 016187 76 DATLVATGGG-DDKGFFWRINQ--GDWASE--IQ-GHKDSVSSLAFSMDGQLLASGGL-D---------GLVQIWDPSSG 139 (394)
Q Consensus 76 ~~~~lasg~~-d~~v~~w~~~~--~~~~~~--~~-~h~~~V~~v~~s~~g~~l~t~s~-d---------~~i~vwd~~~~ 139 (394)
++.+++.||. ...+..+|..+ .++... +. .....-.++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 3455555653 35677888763 444432 22 11111222222 5666666665 2 46889999887
Q ss_pred ceEEEEecC-CCCEEEEEEcCCCCEEEEecCC
Q 016187 140 NLKCTLEGP-GGGVEWVSWHPRGHIVLAGSED 170 (394)
Q Consensus 140 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d 170 (394)
+....-... .......+...++++++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 654322111 1111111222567777888754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.051 Score=48.05 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=101.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecC-CCCEEEEEEc--C-CCCEEEEe-cCCCeEEEEeCCccceeeeecc----c
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWH--P-RGHIVLAG-SEDSTVWMWNADRAAYLNMFSG----H 190 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-s~d~~i~iw~~~~~~~~~~~~~----h 190 (394)
.+++.++.||.|.-.|..+|+.+-+++.. ..++....-. + ++..++.. +.||.++.++..++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999999988887654 1122211100 1 22333343 6899999999877643322211 1
Q ss_pred CcCeEE-E--EE-C----CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc----cCeEEEEEc-----CCCCEEEE
Q 016187 191 GSSVTC-G--DF-T----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT----EGLTCLTIS-----ADSTLALS 253 (394)
Q Consensus 191 ~~~v~~-~--~~-~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~i~~~~~~-----~~~~~l~~ 253 (394)
..++.. . .+ . -.+..+++|+.+|.+...|+++|+.+..+....... ....|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 222221 0 00 0 145678999999999999999999888775321100 001111110 12345666
Q ss_pred EeCCCcEEEEECCCCcE----EEEeccCCCC--E-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce
Q 016187 254 GSKDGSVHMVNITTGKV----VSSLVSHTDS--I-ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS 314 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~----~~~~~~h~~~--i-~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 314 (394)
+..+..+.+.+ ++|+. .......... + ..-..+.++.+ +.++.||.|..+|..+.....
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 66666666655 33421 1111111000 0 00001123455 446788888888876655444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.25 Score=43.59 Aligned_cols=222 Identities=10% Similarity=0.070 Sum_probs=117.0
Q ss_pred CEEEEecCCCeEEEEeCCccceeeeeccc-CcCeEEEEE--CC-CCCeEEEE-eCCCcEEEEcCCCCceEEEEcCCC-Cc
Q 016187 162 HIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDF--TP-DGKTICTG-SDDATLRVWNPKSGENIHVIRGHP-YH 235 (394)
Q Consensus 162 ~~l~~~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~--~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~-~~ 235 (394)
.+++.++.||.|+-+|..+++.+-.+... ..++....- .+ ++..++.. +.||.|..++..+|.....+.... ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36888899999999998888776555433 122222110 01 22333333 689999999988875443332110 01
Q ss_pred ccCeEE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC--C-----EEEEEEC-----CCCCeEEE
Q 016187 236 TEGLTC---LTI-S----ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--S-----IECIGFS-----RSSPWAAT 295 (394)
Q Consensus 236 ~~~i~~---~~~-~----~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~-----i~~v~~~-----~~~~~l~s 295 (394)
..++.. ..+ . ..+..+++|+.+|++...|+.+|+.+-++..... . ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111211 000 0 1456788999999999999999999988754211 0 1111110 11245555
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEE---------------eCCCCEEEEEeCCCeEEEEECCCCeEEE-Eeec
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMW---------------LGTSKYVVTGCVDGKVRVWDSLSGDCVR-TFSG 359 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~ 359 (394)
+..+..+.+.+ ++.. +... .--.| +.++.+ +.++.||.|..+|..+|+.+- +.+
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~------~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~~- 240 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNV------TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVSPT- 240 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCC------EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEECCC-
T ss_pred ecceEEEEEEC-CCCC-eEEE------ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEeec-
Confidence 55555555544 2111 1100 00011 123455 457889999999988887764 221
Q ss_pred ccCcee--------------EEEEcc----------CCCEEEEEeCCCcEEEEeccCC
Q 016187 360 HRDAIQ--------------AISVSA----------HQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 360 h~~~v~--------------~l~~~~----------~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
-..+|. -+.-+| ++..++-.+.+|.+.-+....+
T Consensus 241 l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~y 298 (339)
T 2be1_A 241 FPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNF 298 (339)
T ss_dssp CSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTC
T ss_pred CCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCC
Confidence 111211 111223 3445554677898888887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.087 Score=46.14 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=87.3
Q ss_pred EEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 89 GFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 89 v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
+..+|..+.++... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+....-..+.......+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 67788887776542 2211111122222 56677777754 2577889888766543221111111111124
Q ss_pred CCCEEEEecC------CCeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCC-----CcEEEEcCCCCceE
Q 016187 160 RGHIVLAGSE------DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPKSGENI 226 (394)
Q Consensus 160 ~~~~l~~~s~------d~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~ 226 (394)
++++++.|+. -..+.+||..+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+++ .
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W 234 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-W 234 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-E
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-E
Confidence 5667777764 24588999876543221 1111111122222 56677777643 346788987764 3
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCc
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVNITTGK 269 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d--------------g~i~i~d~~~~~ 269 (394)
..+...+........+. .++++++.|+.+ ..+.+||+.+.+
T Consensus 235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 235 EVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 33332222222222222 246677777653 346677776654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.13 Score=50.49 Aligned_cols=195 Identities=14% Similarity=0.183 Sum_probs=105.0
Q ss_pred CCcEEEEecCC----CeEEEEEcCCCeeeEee-c-------CcccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Q 016187 76 DATLVATGGGD----DKGFFWRINQGDWASEI-Q-------GHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPS 137 (394)
Q Consensus 76 ~~~~lasg~~d----~~v~~w~~~~~~~~~~~-~-------~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~ 137 (394)
++.+++.||.+ ..+.++|..+.++...- . .....-.++.+..++.+++.|+.+ ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45566667643 45778888887765433 1 111122233333267777777754 357889988
Q ss_pred CCceEEEEecCCCCE-EEEEEcCCCCEEEEecCCC--eEEEEeCCccceeee-----ecccCcCeEEEEECCC-CCeEEE
Q 016187 138 SGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGSEDS--TVWMWNADRAAYLNM-----FSGHGSSVTCGDFTPD-GKTICT 208 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s~d~--~i~iw~~~~~~~~~~-----~~~h~~~v~~~~~~~~-~~~l~s 208 (394)
+......-..+.... ..++...++++++.|+.++ .+.+||..+..-... +........++.+..+ ++.++.
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 876543211111111 1222324778888887654 689999876543221 1111111122444544 667777
Q ss_pred EeC--C-----CcEEEEcCCCCce-----EEEEcCCC-CcccCeEEEEEcCCCCEEEEEeC--------CCcEEEEECCC
Q 016187 209 GSD--D-----ATLRVWNPKSGEN-----IHVIRGHP-YHTEGLTCLTISADSTLALSGSK--------DGSVHMVNITT 267 (394)
Q Consensus 209 ~~~--d-----g~i~vwd~~~~~~-----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~~--------dg~i~i~d~~~ 267 (394)
|+. + ..+.+||+.+.+- ...+...+ .......++. ..++++++.|+. ...+.+||+.+
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 765 2 3588999887761 23332211 1112222222 333677777774 34688999987
Q ss_pred CcEE
Q 016187 268 GKVV 271 (394)
Q Consensus 268 ~~~~ 271 (394)
.+-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.32 Score=43.34 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=122.6
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-eeEeec---CcccCEEEEEEcCC---CCEE-EEEeC---C----
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQ---GHKDSVSSLAFSMD---GQLL-ASGGL---D---- 128 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-~~~~~~---~h~~~V~~v~~s~~---g~~l-~t~s~---d---- 128 (394)
-..-..++|.|+ ++++++ ..++.|++++ ..++ .+..+. .-......|+|+|+ +..| ++-+. +
T Consensus 28 l~~P~~ia~~pd-G~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEET-TEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCC-CeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345688999995 556655 4458888887 3444 222221 12356889999997 4444 44332 3
Q ss_pred CcEEEEeCCCC--ce-----E-EEEec-CCCCEEEEEEcCCCCEEEEecC-------------CCeEEEEeCCcc-----
Q 016187 129 GLVQIWDPSSG--NL-----K-CTLEG-PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRA----- 181 (394)
Q Consensus 129 ~~i~vwd~~~~--~~-----~-~~~~~-~~~~v~~~~~~~~~~~l~~~s~-------------d~~i~iw~~~~~----- 181 (394)
..|..|+.... .. + ..+.. .......++|.|++.++++.+. .+.|..++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56777776543 11 1 11221 1112356899999987776432 245666665432
Q ss_pred ---ceeeeecccCcCeEEEEECC-CCCeEEEEeCCC---cEEEEcCCCCc------------------eEEEEcCCCCcc
Q 016187 182 ---AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDA---TLRVWNPKSGE------------------NIHVIRGHPYHT 236 (394)
Q Consensus 182 ---~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg---~i~vwd~~~~~------------------~~~~~~~~~~~~ 236 (394)
.......++.. ...++|+| +|+++++-.... .|.+.. .+. .+..+. . ..
T Consensus 185 pf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~-~~ 258 (354)
T 3a9g_A 185 PFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--S-ET 258 (354)
T ss_dssp SSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--T-CC
T ss_pred CCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--C-CC
Confidence 01111123433 45789999 565544432221 133322 111 011110 0 12
Q ss_pred cCeEEEEEc-------CCCCEEEEEeCCCcEEEEECCCC-cEE--EEec-cCCCCEEEEEECCCCCeEEEEe
Q 016187 237 EGLTCLTIS-------ADSTLALSGSKDGSVHMVNITTG-KVV--SSLV-SHTDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 237 ~~i~~~~~~-------~~~~~l~~g~~dg~i~i~d~~~~-~~~--~~~~-~h~~~i~~v~~~~~~~~l~s~s 297 (394)
.....+.+. .++.++++.-..+.|..+++... +.. ..+. .....+..+++.|++.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 246667773 46777777777788988888753 332 2332 2235688999999987666553
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.86 Score=47.49 Aligned_cols=244 Identities=15% Similarity=0.114 Sum_probs=124.7
Q ss_pred cEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-ecccCcCeEEEEECCC-----
Q 016187 130 LVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPD----- 202 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~----- 202 (394)
.|++.+...+..+..+..+. ..|...+.+. .+++.++ .+.+.++.+..+..... -..-...|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~ 569 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG 569 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence 45666655544555555443 3566665543 3555554 57787777654322111 0112567999999863
Q ss_pred -CCeEEEEeC-CCcEEEEcCCCCceEEEEcCCC-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCcEEEE--ec
Q 016187 203 -GKTICTGSD-DATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVVSS--LV 275 (394)
Q Consensus 203 -~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~--~~~~~~~~--~~ 275 (394)
+++++.|.. |++|+|+.+.+.+.+....... .....+.-+.+ ....++..|-.||.+..+.+ .+|.+... ..
T Consensus 570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 368999996 9999999998766554433211 11112222233 23467889999998865544 45544322 11
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEE-EEEEeCCC--CEEEEEeCCCeEEEEECCCCe
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVT-CLMWLGTS--KYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~--~~l~sg~~dg~i~iwd~~~~~ 352 (394)
-...++.-..+...+..-+-+..+....+|.-+.......... ..+. ...|+... .-++ +..++.++|..+..-.
T Consensus 649 LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~ 726 (1158)
T 3ei3_A 649 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL-KEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQ 726 (1158)
T ss_dssp CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSS-SCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSS
T ss_pred cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccCh-HHhceEeccCcccCCCcEE-EEcCCceEEEEecccC
Confidence 1233443333333333222222233344443322211111111 1232 33343321 2333 3345568888764322
Q ss_pred --EEEEeecccCceeEEEEccCCCEEEEEe
Q 016187 353 --CVRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 353 --~~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
.++++.- +..+..++++|+.+.++.+.
T Consensus 727 ~~~~~~ipL-~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 727 KLHIRTVPL-YESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp SEEEEEEEC-SSEEEEEEEEGGGTEEEEEE
T ss_pred CeeEEEEeC-CCCceEEEEcCCCCEEEEEE
Confidence 2333432 45678999999888765544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.17 Score=45.03 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=93.6
Q ss_pred CcEEEEecC-C---------CeEEEEEcCCCeeeEeecCc---ccCEEEEEEcCCCCEEEEEeCC---------------
Q 016187 77 ATLVATGGG-D---------DKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGLD--------------- 128 (394)
Q Consensus 77 ~~~lasg~~-d---------~~v~~w~~~~~~~~~~~~~h---~~~V~~v~~s~~g~~l~t~s~d--------------- 128 (394)
+.+++.||. + ..+.+||..+.++...-... ...-.++. .++++++.|+.+
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcC
Confidence 456666665 2 45788898888766532211 11122222 567777788754
Q ss_pred ------------------------CcEEEEeCCCCceEEEEecCCC-CE-EEEEEcCCCCEEEEecC------CCeEEEE
Q 016187 129 ------------------------GLVQIWDPSSGNLKCTLEGPGG-GV-EWVSWHPRGHIVLAGSE------DSTVWMW 176 (394)
Q Consensus 129 ------------------------~~i~vwd~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~s~------d~~i~iw 176 (394)
..+.+||+.+.+....-..+.. .. ..+.. -++++++.|+. ...+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEE
Confidence 4788999988876543322211 11 12222 25566677653 3456777
Q ss_pred eC--Ccccee--eeecccCcCeEEEEECCCCCeEEEEeCC----------------------CcEEEEcCCCCceEEEEc
Q 016187 177 NA--DRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDD----------------------ATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 177 ~~--~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~ 230 (394)
++ .+..-. ..+..........+...+++.++.|+.+ ..+.+||+.+.+= ..+.
T Consensus 223 d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~~~~ 301 (357)
T 2uvk_A 223 DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSG 301 (357)
T ss_dssp ECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-EEEE
T ss_pred EecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-eeCC
Confidence 76 333211 1111111111111222356677777632 2477889876542 2222
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcEEEE
Q 016187 231 GHPYHTEGLTCLTISADSTLALSGSKDG------SVHMVNITTGKVVSS 273 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~~g~~dg------~i~i~d~~~~~~~~~ 273 (394)
..+.....-.++ ..++++++.|+.++ .+.++++.+++.+..
T Consensus 302 ~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 302 ELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 222222222222 24677888887543 355567777765544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.61 Score=48.94 Aligned_cols=220 Identities=13% Similarity=0.141 Sum_probs=123.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
.+|.|-|+.++.....-+ -.-.+.-.||..+.++.-. ..++.++|+++...++.+.-.. +|.--.|-... .|+.
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVAL 121 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEE
Confidence 367788887765432111 1112345688888776654 6899999999887777655444 34444554333 3333
Q ss_pred EeCCCcEEEEcCCCCc-eEEEEcCCC-CcccCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCcEEEEeccCCC
Q 016187 209 GSDDATLRVWNPKSGE-NIHVIRGHP-YHTEGLTCLTISADSTLALSGS-------KDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
.+ +..|..|++.... +.+.+..++ .....|..-..+++.++++..+ -.|.+.+|+...+ .-+.+.+|..
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 33 3579999996432 222222221 1233466667788888766432 3477888887654 2333455544
Q ss_pred CEEEEEEC--CC-CCeEEEEe---CCCcEEEEeCCCC---Ccc---ee----cc---CCCCEEEEEEeCCCCEEEEEeCC
Q 016187 280 SIECIGFS--RS-SPWAATGS---MDQKLIIWDLQHS---LPR---ST----CD---HEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 280 ~i~~v~~~--~~-~~~l~s~s---~dg~i~iwd~~~~---~~~---~~----~~---~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
.-..+... +. ...++.+. ..+++.|-++.+. .+. .. .. ..+-..++..++....+..-+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 33333222 11 12222222 2368888887432 110 00 00 11223455667777788888899
Q ss_pred CeEEEEECCCCeEEEE
Q 016187 341 GKVRVWDSLSGDCVRT 356 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~ 356 (394)
|-|.++|+.|+.++..
T Consensus 280 G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYM 295 (1630)
T ss_pred ceEEEEecccchhhhh
Confidence 9999999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.81 E-value=1.2 Score=46.74 Aligned_cols=216 Identities=14% Similarity=0.198 Sum_probs=121.9
Q ss_pred CCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 85 GDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
....|.|-|+..+..+. .+.+ -+.-.+|..+.+|.=+ ..++.|+|+.+...+..+.-+.. |..-+|-....
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~ 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNT 118 (1630)
T ss_pred CCceEEEEECCCCCCcccccccc-----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCe
Confidence 33467777776644321 1111 1233567776666554 67899999988877766655444 44446654443
Q ss_pred EEEEecCCCeEEEEeCCc-cceeeeeccc----CcCeEEEEECCCCCeEEEEe-------CCCcEEEEcCCCCceEEEEc
Q 016187 163 IVLAGSEDSTVWMWNADR-AAYLNMFSGH----GSSVTCGDFTPDGKTICTGS-------DDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~-~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~ 230 (394)
+-++ .+..|+.|++.. ..+.+.+.-| ...|..-..+++.++++..+ -.|.+.+|.+..+.. +.+.
T Consensus 119 l~lV--T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ie 195 (1630)
T 1xi4_A 119 VALV--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 195 (1630)
T ss_pred eEEE--cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhh
Confidence 3222 356899999964 3444555555 44566667788888876443 357888998765432 2333
Q ss_pred CCCCcccCeEEEEE--cCC-CCEEEEEe---CCCcEEEEECCCC---c-EE-----EEecc---CCCCEEEEEECCCCCe
Q 016187 231 GHPYHTEGLTCLTI--SAD-STLALSGS---KDGSVHMVNITTG---K-VV-----SSLVS---HTDSIECIGFSRSSPW 292 (394)
Q Consensus 231 ~~~~~~~~i~~~~~--~~~-~~~l~~g~---~dg~i~i~d~~~~---~-~~-----~~~~~---h~~~i~~v~~~~~~~~ 292 (394)
+|.. ....+.. .+. ..++..+. ..++++|.++... . .. .-+.. -.+-.-++..++....
T Consensus 196 gha~---~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 196 GHAA---SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred HhHh---hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 3211 1111111 011 11222111 1368999988542 1 11 00111 1233446777888788
Q ss_pred EEEEeCCCcEEEEeCCCCCcc
Q 016187 293 AATGSMDQKLIIWDLQHSLPR 313 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~ 313 (394)
+...+.-|.+.+||+.+..+.
T Consensus 273 iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEecCceEEEEecccchhh
Confidence 888889999999999876543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.55 Score=46.13 Aligned_cols=191 Identities=11% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCceEEEE-e-----cCCCC-EEEEEEcC-CCCEEEEecCC------CeEEEEeC
Q 016187 117 MDGQLLASGGLD----GLVQIWDPSSGNLKCTL-E-----GPGGG-VEWVSWHP-RGHIVLAGSED------STVWMWNA 178 (394)
Q Consensus 117 ~~g~~l~t~s~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~l~~~s~d------~~i~iw~~ 178 (394)
.++..++.|+.+ ..+.+||+.+++....- . .+... -.+++..+ ++++++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666666643 46788888887765433 2 11111 12233333 67777777643 35788888
Q ss_pred Cccceeee--ecccCcCeEEEEECCCCCeEEEEeCCC--cEEEEcCCCCceEEEEcC---CCCcccCeEEEEEcCC-CCE
Q 016187 179 DRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIHVIRG---HPYHTEGLTCLTISAD-STL 250 (394)
Q Consensus 179 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~---~~~~~~~i~~~~~~~~-~~~ 250 (394)
.+..-... +......- ++....+++.++.|+.++ .+.+||+.+++ ...+.. .+.......++.+..+ +++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 76432221 11111111 223334788888887655 68999998764 333321 1111122233455554 677
Q ss_pred EEEEeC--C-----CcEEEEECCCCcE-----EEEecc----CCCCEEEEEECCCCCeEEEEeC--------CCcEEEEe
Q 016187 251 ALSGSK--D-----GSVHMVNITTGKV-----VSSLVS----HTDSIECIGFSRSSPWAATGSM--------DQKLIIWD 306 (394)
Q Consensus 251 l~~g~~--d-----g~i~i~d~~~~~~-----~~~~~~----h~~~i~~v~~~~~~~~l~s~s~--------dg~i~iwd 306 (394)
++.|+. + ..+..||+.+.+- ...+.. ......++ ...++.+++.|+. ...+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 777765 2 3588999887761 122211 11112222 2232566666663 34588888
Q ss_pred CCCC
Q 016187 307 LQHS 310 (394)
Q Consensus 307 ~~~~ 310 (394)
+.+.
T Consensus 633 ~~t~ 636 (695)
T 2zwa_A 633 PLSE 636 (695)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.53 E-value=1.2 Score=39.51 Aligned_cols=230 Identities=12% Similarity=0.156 Sum_probs=119.7
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEe---e----cCcccCEEEEEEcCC----CCEEEEEeC-----
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---I----QGHKDSVSSLAFSMD----GQLLASGGL----- 127 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~---~----~~h~~~V~~v~~s~~----g~~l~t~s~----- 127 (394)
-..-..++|.|++..++++- ..+.|++++.. +..... + .........|+|+|+ +.+.++-+.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITL-RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEE-TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEEEe-CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568999999654266553 56888888743 332211 1 112345789999996 444444332
Q ss_pred --CCcEEEEeCCCC--ce---EEEEec-C-----CCCEEEEEEcCCCCEEEEecC-------------CCeEEEEeCCcc
Q 016187 128 --DGLVQIWDPSSG--NL---KCTLEG-P-----GGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRA 181 (394)
Q Consensus 128 --d~~i~vwd~~~~--~~---~~~~~~-~-----~~~v~~~~~~~~~~~l~~~s~-------------d~~i~iw~~~~~ 181 (394)
...|..++...+ .. ...+.. + ...-..+.|.|++.++++.+. .+.|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 234666665432 11 111211 1 112346999999976666433 246766776532
Q ss_pred c------------eeeee-cccCcCeEEEEECC-CCCeEEEEe-CCCcEEEEcCCCCceE----E---------EE----
Q 016187 182 A------------YLNMF-SGHGSSVTCGDFTP-DGKTICTGS-DDATLRVWNPKSGENI----H---------VI---- 229 (394)
Q Consensus 182 ~------------~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~-~dg~i~vwd~~~~~~~----~---------~~---- 229 (394)
. ....+ .++. ....++|.| +|++.++-. .++.=.|.-+..+... . .+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 1 11112 2343 356789999 554443321 1221222222222110 0 00
Q ss_pred ----cC--CC----CcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCcEEEE--ec-cCCCCEEEEEECCC
Q 016187 230 ----RG--HP----YHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVSS--LV-SHTDSIECIGFSRS 289 (394)
Q Consensus 230 ----~~--~~----~~~~~i~~~~~~~-------~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~-~h~~~i~~v~~~~~ 289 (394)
.. .+ .+......+.+.. ++.++++.-..+.|..+++..++.+.. +. .....+..+++.|+
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 00 00 0112455666653 467777777788888888876654432 22 22347889999999
Q ss_pred CCeEEEE
Q 016187 290 SPWAATG 296 (394)
Q Consensus 290 ~~~l~s~ 296 (394)
+.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.47 E-value=2.2 Score=42.18 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=174.3
Q ss_pred cEEEEEEcCCCCc-EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 66 EVYSVACSPTDAT-LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 66 ~v~~~~~~p~~~~-~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
.|.++...+.+.. .++|. +-+..++..++++.....-....|.++...++|.+.+ |+.+ -+.+++..+++....
T Consensus 192 ~i~~i~~d~~~~~lWigt~---~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE---GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHI 266 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE---EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEE
T ss_pred eeEEEEEECCCCEEEEEEC---CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEE
Confidence 4778877664443 44442 3577788777654332111234688999888887665 4444 488888876654322
Q ss_pred Eec-------CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-------ccCcCeEEEEECCCCCeEEEEe
Q 016187 145 LEG-------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-------GHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 145 ~~~-------~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
... ....|.++....++.+.+. +..| +.++.... . ...+. .....|.++.-..+|.+ ..|+
T Consensus 267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~l-WiGt 341 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKGFY-WFGG 341 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCE-EEEE
T ss_pred EcCCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCCCE-EEee
Confidence 111 2235888877777765543 3445 44443221 1 11110 12345777777766664 4445
Q ss_pred CCCcEEEEcCCCCc--eEEEEcC----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--cc----CC
Q 016187 211 DDATLRVWNPKSGE--NIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VS----HT 278 (394)
Q Consensus 211 ~dg~i~vwd~~~~~--~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~----h~ 278 (394)
.+| +..++..+++ ....+.. .......|.++...+++.+.+ |+ ++-|..+|..+++...-. .. ..
T Consensus 342 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~ 418 (758)
T 3ott_A 342 ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNT 418 (758)
T ss_dssp TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBS
T ss_pred CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCC
Confidence 555 6666665432 1222221 112234588888888887665 44 457999998887543211 11 23
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----Ccc---ee----c-cCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-----LPR---ST----C-DHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~---~~----~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
..|.++...+++.+.+ |+..+-|.++|..+. ... .. . .....|.++...+++.+.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEE
Confidence 4588888877776444 555555777774320 000 00 0 11235888888888887764444455888
Q ss_pred EECCCCeEEEEee-c--ccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 346 WDSLSGDCVRTFS-G--HRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 346 wd~~~~~~~~~~~-~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+|..+++...... + ....+.++....++.+.+. +..| +..|+.
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~ 543 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINP 543 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEec
Confidence 8987776543221 1 1245778888888877654 4455 555654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.33 E-value=1.7 Score=40.05 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE--EcCC---CCcccCeEEEEEcCC----CCEEEEEeC------
Q 016187 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--IRGH---PYHTEGLTCLTISAD----STLALSGSK------ 256 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~----~~~l~~g~~------ 256 (394)
.....++|.|+|+++++-...+.|++++..+++.... +... +....++..++++|+ +.++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567899999998777655445798888655543222 2211 012456788999995 444444332
Q ss_pred ------CCcEEEEECCCC-------cEEE-Eecc-CCCCEEEEEECCCCCeEEEEe
Q 016187 257 ------DGSVHMVNITTG-------KVVS-SLVS-HTDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 257 ------dg~i~i~d~~~~-------~~~~-~~~~-h~~~i~~v~~~~~~~~l~s~s 297 (394)
...|.-+++..+ +.+. .+.. .......|+|.|++.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321 1122 1221 123478899999998766654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.27 E-value=1.2 Score=38.06 Aligned_cols=242 Identities=15% Similarity=0.134 Sum_probs=118.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
.|..|+..... .++. . |+.|..|-......+..-......|..++..... .++. . |+.++.|-....-.+-...
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56777665432 2333 4 8999999754322111101112345556554333 2333 4 8999999754321111111
Q ss_pred ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.-...|..++.... ..+.-. ||.|..|=....-++. ........|..++....-.+++ . ||.+..|-....
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---VPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYF 169 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---CCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCC
Confidence 11235666655433 333334 8999999654321110 0001223466665544333332 3 688888875432
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
..+..-..-...|..++.......++ .||.+..|-.... +..........|..++.......+++ ||+|+.|-
T Consensus 170 gqlg~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG 243 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWG 243 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEES
T ss_pred CCCCCceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEec
Confidence 11111011134577777665443333 4999999975432 11111111234556655444333333 99999996
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
.....++.. ...|.+++......+
T Consensus 244 ~n~~gq~~v----~~~v~~iaaG~~h~~ 267 (282)
T 3qhy_B 244 SSRTAPSSV----QSGVSSIEAGPNAAY 267 (282)
T ss_dssp TTCCCCGGG----SSCEEEEEECSSCEE
T ss_pred CCCCccccC----CCCcEEEEECcCeEE
Confidence 544333221 235667766654333
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.10 E-value=2.2 Score=40.07 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=149.1
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCc-------------------------ccCE--EEEEEc---CCCCEEEEEe-
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGH-------------------------KDSV--SSLAFS---MDGQLLASGG- 126 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h-------------------------~~~V--~~v~~s---~~g~~l~t~s- 126 (394)
..|.|||..|.++|+-+.+++.+..+.-- .+-. ..+++. .||++|+.-.
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 45889999999999999988876654210 0000 123332 3678887776
Q ss_pred CCCcEEEEeCCCCceEEEEecC-CCCEEEEEEc--CCCCEEEEecCCCeEEE-----EeCCccceeeee---cccCcCeE
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWH--PRGHIVLAGSEDSTVWM-----WNADRAAYLNMF---SGHGSSVT 195 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~s~d~~i~i-----w~~~~~~~~~~~---~~h~~~v~ 195 (394)
.+..|-.-++...+....++-+ ...+..++|. |+..++++++....-.- ..++..+....+ .+..-.|.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 4556777788888776666544 3568888886 67778887765321110 000110000111 01111110
Q ss_pred -EEEECCCCCe-EEEEeCCCcEEEE---cCCCCceEEEEcCCCCcccCeEEEEEc--------CCCCEEEEEeCCC-cEE
Q 016187 196 -CGDFTPDGKT-ICTGSDDATLRVW---NPKSGENIHVIRGHPYHTEGLTCLTIS--------ADSTLALSGSKDG-SVH 261 (394)
Q Consensus 196 -~~~~~~~~~~-l~s~~~dg~i~vw---d~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~g~~dg-~i~ 261 (394)
.+.. +|++ .+-.+.+|...++ +.+.+..+..+. ..+.=..+.|+ .+|++-.. +| .+.
T Consensus 231 ~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~----~~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~gv~ 301 (638)
T 3sbq_A 231 FQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMM----RNERDWVVVFDIHAVEAAVKAGDFITL---GDSKTP 301 (638)
T ss_dssp EEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT----CSSCEEEEEEEHHHHHHHHHTTCCBCC---TTCCCC
T ss_pred EEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcC----cccccEEEEecHHHHHHHHhcCCeEEE---CCCCee
Confidence 0000 0100 0111222222222 221111000000 00111111221 12322211 21 467
Q ss_pred EEECCC----CcEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCC---------Ccce----eccCCCCEE
Q 016187 262 MVNITT----GKVVSSLVSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHS---------LPRS----TCDHEDGVT 323 (394)
Q Consensus 262 i~d~~~----~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~---------~~~~----~~~~~~~v~ 323 (394)
+.|.+. +..+..+..-......+.++|+|++++.++ .+.++.++|+++. .++. ...-.-...
T Consensus 302 ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl 381 (638)
T 3sbq_A 302 VLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL 381 (638)
T ss_dssp EEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE
T ss_pred EEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc
Confidence 777765 322222222334556788999999876654 5789999998641 1111 111234567
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCC----------eEEEEeecccCceeEEEE------ccCCCEEEEEe
Q 016187 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSG----------DCVRTFSGHRDAIQAISV------SAHQDFLVSVS 380 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~------~~~~~~l~s~s 380 (394)
..+|.++|.-..|-..|..|--|++... ..+.++.-|-++ -.+.. .+||++|++..
T Consensus 382 Ht~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 382 HTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 8899999955555568999999997543 456666655543 23333 47888988874
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.01 E-value=1.8 Score=38.35 Aligned_cols=231 Identities=10% Similarity=0.095 Sum_probs=123.6
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce--eeee----cccCcCeEEEEECCC---CCeEEEE---eCC
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMF----SGHGSSVTCGDFTPD---GKTICTG---SDD 212 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~--~~~~----~~h~~~v~~~~~~~~---~~~l~s~---~~d 212 (394)
+...-.....++|.|++.++++--..|.|++++...++. +..+ .........++|+|+ +..|... ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345578899999999777766689999998654432 2111 123456788999995 4445433 234
Q ss_pred CcEEEEcCCCC----------ceEE-EEcCCCCcccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC
Q 016187 213 ATLRVWNPKSG----------ENIH-VIRGHPYHTEGLTCLTISADSTLALSGSK-------------DGSVHMVNITTG 268 (394)
Q Consensus 213 g~i~vwd~~~~----------~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~ 268 (394)
..|.-|....+ +.+. .+.....| ....+.|.|+|.++++-+. -|+|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 45555544431 1111 12211123 2346899999988777542 355555554321
Q ss_pred ---------cEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCC------------------cceeccCC-
Q 016187 269 ---------KVVSSLVSHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQHSL------------------PRSTCDHE- 319 (394)
Q Consensus 269 ---------~~~~~~~~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~------------------~~~~~~~~- 319 (394)
..+.. .+|. ....++|+|++.+.++- +.++.=.|--+.... +.....+.
T Consensus 185 ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 185 PAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp BCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred ccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 01111 2333 34578899987765543 223222222221110 01111122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----EEEeecccCceeEEEEccCCCEEEEEe
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC----VRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
.....++|. ++..++..-..+.|....+..... ..-+.+..+.+..|+..|||.++++-.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 245566666 344555555555665555543322 233455557899999999998777644
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.85 E-value=2.4 Score=39.11 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=61.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee--EeecC------cccCEEEEEEcCC---CCEE-EEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQG------HKDSVSSLAFSMD---GQLL-ASG 125 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~--~~~~~------h~~~V~~v~~s~~---g~~l-~t~ 125 (394)
..+...-..-+.++|.|+ ++++++-...+.|++++...++.. ..+.. -......|+|+|+ +.+| ++-
T Consensus 20 ~~~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 333333456689999996 567766544457877775544432 22221 2456789999995 4444 444
Q ss_pred eC------------CCcEEEEeCCCC--ce-----EE-EEec-CCCCEEEEEEcCCCCEEEEec
Q 016187 126 GL------------DGLVQIWDPSSG--NL-----KC-TLEG-PGGGVEWVSWHPRGHIVLAGS 168 (394)
Q Consensus 126 s~------------d~~i~vwd~~~~--~~-----~~-~~~~-~~~~v~~~~~~~~~~~l~~~s 168 (394)
+. ...|.-++...+ +. +. .+.. .......++|.|+++++++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 32 134555554322 11 11 1221 123467899999999777644
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=2.9 Score=38.06 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=142.8
Q ss_pred CCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 85 GDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
....+.+-|+..+.... .+.+- +.-.+|..+.+|.=. ..++.|+|+.+...+..+.-+..-+. -+|-....
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad-----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vvf-WkWis~~~ 118 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD-----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTF-WKWISLNT 118 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS-----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCE-EEEEETTE
T ss_pred CCCeEEEEECCCCCcceecccccc-----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceE-EEecCCCe
Confidence 34467778877644322 22221 344677777776555 67899999999888877776555444 45654433
Q ss_pred EEEEecCCCeEEEEeCCc-cceeeeeccc----CcCeEEEEECCCCCeEEEEe-------CCCcEEEEcCCCCceEEEEc
Q 016187 163 IVLAGSEDSTVWMWNADR-AAYLNMFSGH----GSSVTCGDFTPDGKTICTGS-------DDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~-~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~ 230 (394)
+-++ .+..|+-|++.. ..+.+.+.-| ...|..-..+++.++++..+ -.|.+.+|..+.+.. +.+.
T Consensus 119 l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie 195 (494)
T 1bpo_A 119 VALV--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 195 (494)
T ss_dssp EEEE--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC
T ss_pred EEEE--cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe
Confidence 3222 357899999864 3455555555 34566667789999877543 247889998876543 4455
Q ss_pred CCCCcccCeEEEEEcCCC-----CEEEEEeC---CCcEEEEECCCC--------cEEEEe-c---cCCCCEEEEEECCCC
Q 016187 231 GHPYHTEGLTCLTISADS-----TLALSGSK---DGSVHMVNITTG--------KVVSSL-V---SHTDSIECIGFSRSS 290 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~-----~~l~~g~~---dg~i~i~d~~~~--------~~~~~~-~---~h~~~i~~v~~~~~~ 290 (394)
+|. ... ..+-.+| .++..+.. .+++++.++... +....+ . .-.+-.-++..++..
T Consensus 196 Gha---a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky 270 (494)
T 1bpo_A 196 GHA---ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 270 (494)
T ss_dssp CSE---EEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT
T ss_pred eee---eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC
Confidence 542 111 1121111 12333322 378999998542 111111 1 123445678888888
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
..+.....-|.+.+||+.+..+.... -..+.|...+......-++.-...|.|.--
T Consensus 271 gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 271 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 88889999999999999987554322 122333333333333333333344444433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.92 E-value=5.4 Score=39.40 Aligned_cols=306 Identities=12% Similarity=0.104 Sum_probs=169.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec----CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ----GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~----~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
.|.++... ++.+.+. ..+ .+..++..++++..... -....|.++...++|.+.+ |+.. -|..++..+++.
T Consensus 104 ~i~~i~~~--~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~ 177 (758)
T 3ott_A 104 DVRTMALQ--GDTLWLG-ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF 177 (758)
T ss_dssp CEEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred eEEEEEec--CCcEEEE-cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCce
Confidence 46666543 3444432 333 57778877665433201 1234688998888888765 4444 477888776654
Q ss_pred EEEEecC------CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 142 KCTLEGP------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 142 ~~~~~~~------~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
.. +..+ ...|.++...+++..|..|+. +-+..++..+++...........|.++...++|.+.+ |+.+ -+
T Consensus 178 ~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl 253 (758)
T 3ott_A 178 EG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GL 253 (758)
T ss_dssp EE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EE
T ss_pred EE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ce
Confidence 32 2211 224777877776665555553 5688888776543222111234577777777776544 4444 47
Q ss_pred EEEcCCCCceEEEEcC-----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-----cCCCCEEEEE
Q 016187 216 RVWNPKSGENIHVIRG-----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-----SHTDSIECIG 285 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~h~~~i~~v~ 285 (394)
.+++..+++.. .+.. .......|.++....++.+.+ |+..| +.++............ .....|.++.
T Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 330 (758)
T 3ott_A 254 YVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLF 330 (758)
T ss_dssp EEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEE
T ss_pred eEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEE
Confidence 78887765432 2221 112334688888888887655 44556 5554332211111111 1234688888
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCc--ceec--------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHSLP--RSTC--------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
..+++.+-+. +.+| +..++..+... .... .....|.++.-.+++++.+ |+ ++-|..|+..+++...
T Consensus 331 ~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~ 406 (758)
T 3ott_A 331 RDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIH 406 (758)
T ss_dssp ECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEE
T ss_pred EcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEE
Confidence 8887775443 3444 55666543110 0001 1123588887777776554 44 4569999988776543
Q ss_pred Ee-ec-----ccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 356 TF-SG-----HRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 356 ~~-~~-----h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
-. .. ....|.++...+++.+.+ |+..+-+.+++
T Consensus 407 ~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 407 YNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVD 445 (758)
T ss_dssp EEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEE
T ss_pred eecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEc
Confidence 21 11 124578887777766544 55544466565
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.88 E-value=2.7 Score=35.87 Aligned_cols=240 Identities=18% Similarity=0.144 Sum_probs=116.6
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.|..|+... .+.++- . |+.++.|-.+..-.+..-..-...|..++...... ++. . |+.|..|-......+..-
T Consensus 25 ~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCC
Confidence 455666543 233444 3 88998887544221111111233577777654433 333 4 899999975532211111
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
..-...|..++...... +.-. ++.++.|-......+.........|..++..... .++ -. ||.|..|-.....+
T Consensus 98 ~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCC
Confidence 11123566666554433 3334 8999999754321111111123346555544322 222 23 78998886543211
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIW 305 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iw 305 (394)
+. ........+..++....-.+++ .||.|..|-......+..-......|..|+.......+++ ||++..|
T Consensus 172 lg---~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 172 TT---VPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp TS---CCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred CC---CceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence 11 0001123566666554433333 4899999975432111100111235666766655444443 9999999
Q ss_pred eCCCCCcceeccCCCCEEEEEEeCC
Q 016187 306 DLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 306 d~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
-.....+.. -...|..++....
T Consensus 243 G~n~~gq~~---v~~~v~~iaaG~~ 264 (282)
T 3qhy_B 243 GSSRTAPSS---VQSGVSSIEAGPN 264 (282)
T ss_dssp STTCCCCGG---GSSCEEEEEECSS
T ss_pred cCCCCcccc---CCCCcEEEEECcC
Confidence 755432221 1334555554443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.21 E-value=4.2 Score=35.92 Aligned_cols=234 Identities=9% Similarity=0.054 Sum_probs=122.1
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee--Eee----cCcccCEEEEEEcCC----CCEEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEI----QGHKDSVSSLAFSMD----GQLLASGG 126 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~--~~~----~~h~~~V~~v~~s~~----g~~l~t~s 126 (394)
..++...-..-+.++|.|+ +.++++--..++|++++...++.. ..+ ..-......|+|+|+ +.+.++-+
T Consensus 24 ~~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eEEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 3344444567789999996 567777655889988876555432 212 123456889999995 44444332
Q ss_pred --CCCcEEEEeCCCC----------ceEE-EEec-CCCCEEEEEEcCCCCEEEEecC-------------CCeEEEEeCC
Q 016187 127 --LDGLVQIWDPSSG----------NLKC-TLEG-PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNAD 179 (394)
Q Consensus 127 --~d~~i~vwd~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~s~-------------d~~i~iw~~~ 179 (394)
.+..|.-|....+ +.+. .+.. ....-..+.|.|++.++++.+. -+.|.-.+..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 3445655655431 1111 1221 1112346899999987777542 3455555554
Q ss_pred cc--------ceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCce------------------EEEEcCC
Q 016187 180 RA--------AYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGEN------------------IHVIRGH 232 (394)
Q Consensus 180 ~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~------------------~~~~~~~ 232 (394)
.. .....-.+|..+ ..++|+|+|++.++= +.|+.-.|--+..+.. +..+..
T Consensus 183 G~ip~~nPf~~~~i~a~G~RNp-~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~- 260 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHRNV-QGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST- 260 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCSBC-CEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-
T ss_pred CCccCCCCCCCCeEEeeCCCCc-ceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-
Confidence 32 111112355543 478999987655443 2232222221122211 000000
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
+......++|. ++.+++..-..+.|..+.+..... ..-+......+..|+..|++.++++.
T Consensus 261 --~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 261 --DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp --TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred --CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 00133445554 455666666666777666654432 11222334568888888888755543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.79 E-value=8.7 Score=34.34 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=66.6
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEec-------------------CCCCEEEEEEcCC-CCEEEE
Q 016187 109 SVSSLAFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEG-------------------PGGGVEWVSWHPR-GHIVLA 166 (394)
Q Consensus 109 ~V~~v~~s~~--g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~~ 166 (394)
.|.+++++|. ...|..+...+-|...+- .|+.-..+.. ....+..+.+.|. ...++.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5888999872 344555555555555432 2222112211 1235778889874 334444
Q ss_pred ecCCCeEEEEeCCccceeeeec-c----c--------CcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 167 GSEDSTVWMWNADRAAYLNMFS-G----H--------GSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~-~----h--------~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
+..++.|...+-. ++.-..+. + + ...+.++.+.|. ...|+.+...+ |...+ ..++....+..
T Consensus 195 g~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~- 270 (394)
T 3b7f_A 195 GMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD- 270 (394)
T ss_dssp EEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG-
T ss_pred EECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC-
Confidence 4444444443322 21111111 0 0 134788899885 45666666555 33332 12443333321
Q ss_pred CCcc---cCeEEEEEcCC-CCEEEEE
Q 016187 233 PYHT---EGLTCLTISAD-STLALSG 254 (394)
Q Consensus 233 ~~~~---~~i~~~~~~~~-~~~l~~g 254 (394)
.... ..+.++.++|. ...++++
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCCCccceEEEEECCCCCCEEEEE
Confidence 0111 23567788763 3334444
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=89.34 E-value=9.8 Score=32.76 Aligned_cols=204 Identities=7% Similarity=0.023 Sum_probs=104.5
Q ss_pred EEcCCCCEEEEecC--------------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe--CC--CcEEE
Q 016187 156 SWHPRGHIVLAGSE--------------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DD--ATLRV 217 (394)
Q Consensus 156 ~~~~~~~~l~~~s~--------------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d--g~i~v 217 (394)
-+++++..|+-+.. ...|+..++.......... .. +..|++++++|+-.. .+ ..|..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence 45677776655433 2456777776655333222 11 236778888887655 33 34555
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
-++.. .....+..... ..++++++.|+-.+. ...|...++..+... .+.. +... ..+.|++.+|+-.
T Consensus 134 ~~~dG-s~~~~lt~~~~-------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~--~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 134 IRIDG-EEKKKIKNHYL-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYD--CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp EETTS-CCCEEEESSCC-------CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEEC--SCEE-EEEEEETTEEEEE
T ss_pred EECCC-CCeEEEeCCCc-------eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeC--CCcc-ceeeecCCEEEEE
Confidence 55543 33333432211 234667776665444 678888888765433 3322 2222 3456888888766
Q ss_pred eCCC--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 297 SMDQ--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC--VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 297 s~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
...+ .|..-++......... ...+. .+.|.+.+|.-++ ..+.|..-++. |...+.+... .+.. +++.
T Consensus 202 ~~~~~~~I~~~~ldG~~~~~Lt--~~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~--~~~~--i~i~ 272 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPNPVVLT--EANIE--HYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG--EFCN--INVT 272 (302)
T ss_dssp EGGGTTEEEEECSSSCCCEECS--CSCEE--EEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES--CEEE--EEEC
T ss_pred EcCCCcEEEEEECCCCCeEEEe--CCCcc--eEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC--ccce--EEEe
Confidence 5443 4555555544332222 22332 3677788877553 23556666654 3333333321 2333 3445
Q ss_pred CCEEEEEe-CCCcE
Q 016187 373 QDFLVSVS-LDGTA 385 (394)
Q Consensus 373 ~~~l~s~s-~dg~i 385 (394)
+.+|+-.. ..+.|
T Consensus 273 ~d~Iy~td~~~~~i 286 (302)
T 3s25_A 273 SQYVYFTDFVSNKE 286 (302)
T ss_dssp SSEEEEEETTTCCE
T ss_pred CCEEEEEECCCCeE
Confidence 55555333 33443
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.93 E-value=9.9 Score=32.26 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=91.9
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCCCcEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCC
Q 016187 237 EGLTCLTISADSTLALSGSKDGSVHMVN---ITTGKVVSSLVSHTDSIECIGFSR--SSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg~i~i~d---~~~~~~~~~~~~h~~~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
+.+..+........++.-+..|.++... +..++... +....+.|..+.. + +..+++..+..|.++...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444443333344455556667665433 22221100 1223455666544 3 46789999999999998865432
Q ss_pred cc------eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCeEEEEeecccCceeEEEEccCCCEE
Q 016187 312 PR------STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL---------SGDCVRTFSGHRDAIQAISVSAHQDFL 376 (394)
Q Consensus 312 ~~------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~l 376 (394)
.+ ....-.+.+..+........|+..+..|.++.++.. .|...-.+.. ...|..+...+++.++
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEE
Confidence 11 111233456666555566788899999999988742 1222212333 3456666555667789
Q ss_pred EEEeCCCcEEEEeccCCC
Q 016187 377 VSVSLDGTARVFEIADFK 394 (394)
Q Consensus 377 ~s~s~dg~i~iw~~~~~~ 394 (394)
+.++..|.++...+.+|+
T Consensus 181 l~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIP 198 (276)
T ss_dssp EEEETTSCEEEEEGGGSC
T ss_pred EEEeCCCcEEEeEHHHcc
Confidence 999999999999887764
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=88.28 E-value=12 Score=32.53 Aligned_cols=188 Identities=12% Similarity=0.143 Sum_probs=105.0
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCc----eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC---C------C
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI---T------T 267 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~---~------~ 267 (394)
|+...+++.+.+|.|+--.+...+ .-..++ ..+.+..+........++.-+..|.+.-+.. . .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk----e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK----DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC----TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC----CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 556678888888988765432110 000011 1233444444444556666667777665543 2 2
Q ss_pred CcEEEEec--cCCCCEEEE-EECC--CCCeEEEEeCCCcEEEEeCCCCCc------ce--eccCCCCEEEEEEeCCCCEE
Q 016187 268 GKVVSSLV--SHTDSIECI-GFSR--SSPWAATGSMDQKLIIWDLQHSLP------RS--TCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 268 ~~~~~~~~--~h~~~i~~v-~~~~--~~~~l~s~s~dg~i~iwd~~~~~~------~~--~~~~~~~v~~~~~~~~~~~l 334 (394)
|.++..+. ...+.|.++ ...+ +..+++..+..|.++.-.+..... .. .....+.+..+........|
T Consensus 79 G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 79 GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 33222211 123345544 3432 256889999999999987642111 11 11223455555555566678
Q ss_pred EEEeCCCeEEEEECCC-------CeEEE--EeecccCceeEEEEccCCC-EEEEEeCCCcEEEEeccCC
Q 016187 335 VTGCVDGKVRVWDSLS-------GDCVR--TFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~-------~~~~~--~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~~~ 393 (394)
+..+.+|.+..++... ++-++ .+.. .+.|.++..-+++. .|+..+..|..+..++..|
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 8889999998887521 11122 2332 34465664444445 7889999999888887765
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=87.76 E-value=1.9 Score=40.48 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=67.4
Q ss_pred eEEEEECCCCCeEEEE-eCCCcEEEEcCCCCce-----E----EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 194 VTCGDFTPDGKTICTG-SDDATLRVWNPKSGEN-----I----HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 194 v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~-----~----~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
...+.++|||++++.+ -.+.++.++|++.-.. + ..+........+.....|.++|....+---|..|..|
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence 3457889999988655 4578899999864211 0 0011111234467788999999666677789999999
Q ss_pred ECCCC----------cEEEEeccCCCCEEEEE-----ECCCCCeEEEEe
Q 016187 264 NITTG----------KVVSSLVSHTDSIECIG-----FSRSSPWAATGS 297 (394)
Q Consensus 264 d~~~~----------~~~~~~~~h~~~i~~v~-----~~~~~~~l~s~s 297 (394)
++... .++.++..|-.+-.-.+ -.++|+||++..
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 98653 46666766654433222 246788888764
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=86.71 E-value=15 Score=31.80 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT---TG- 268 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~---~~- 268 (394)
-|+..++++.+.+|.|+--.+..-+. +..+.. -..+.+..+........++..+..|.++-+... ..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l--ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL--NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc--CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 35667788889999998775433211 111110 012334444444445566677778877666542 21
Q ss_pred -----cEE---EEeccCCCCEEEEEECC---CCCeEEEEeCCCcEEEEeCCCCCc-------ceeccCCCCEEEEEEeCC
Q 016187 269 -----KVV---SSLVSHTDSIECIGFSR---SSPWAATGSMDQKLIIWDLQHSLP-------RSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 269 -----~~~---~~~~~h~~~i~~v~~~~---~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~ 330 (394)
..+ -.+. ..+.|.++...+ ...+++..+..|.++.-.+..... .......+.+..+.....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 110 0111 123444443322 456788889999999887643211 111222455666655555
Q ss_pred CCEEEEEeCCCeEEEEECCC---------CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 331 SKYVVTGCVDGKVRVWDSLS---------GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
...++..+.+|.+..+.... |...-.+.. ...|..+..-.++..++..+..|..+...+.+++
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~ 233 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKIS 233 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhc
Confidence 67888899999999997532 222223333 4456666555566778899999999999887763
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.35 E-value=18 Score=31.52 Aligned_cols=188 Identities=11% Similarity=0.145 Sum_probs=105.0
Q ss_pred CeEEEEeCCCcEEEEcCCCC-------ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCC------
Q 016187 204 KTICTGSDDATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN---ITT------ 267 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d---~~~------ 267 (394)
..+++.+.+|.|+--.+.+. +-+..+.. ...+.+..+........++.-+..|.++... +..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~--ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL--KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC--CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc--CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 35667777787775432211 10111110 0123344444444444555555666655443 332
Q ss_pred CcEEEEecc--CCCCEEEE-EECC--CCCeEEEEeCCCcEEEEeCCCCCcc-------eeccCCCCEEEEEEeCCCCEEE
Q 016187 268 GKVVSSLVS--HTDSIECI-GFSR--SSPWAATGSMDQKLIIWDLQHSLPR-------STCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 268 ~~~~~~~~~--h~~~i~~v-~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
|.++..+.. ..+.|.++ .+.+ +..+++..+..|.++.-.+...... ....-.+.+..+........|+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 333222211 23445544 3432 5779999999999998876432111 1112244566665556667888
Q ss_pred EEeCCCeEEEEECC--C---------CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 336 TGCVDGKVRVWDSL--S---------GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 336 sg~~dg~i~iwd~~--~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
..+..|.+..+.+. . |...-.+. ....|.++...+.+.+|+.++..|.++.-.+.+|+
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcc
Confidence 89999999988766 2 11111232 24557777666667799999999999998887764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=82.91 E-value=22 Score=30.54 Aligned_cols=175 Identities=8% Similarity=-0.022 Sum_probs=95.2
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----CCCeEE
Q 016187 113 LAFSMDGQLLASGGLD--------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----EDSTVW 174 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d--------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~d~~i~ 174 (394)
--++++|.+|+=+... ..|+..++..++....... . ...|+++++.|+-.. ....|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888887655432 3577777776654332221 1 236777887776554 334555
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
..++...... .+..+.. .+|+|+++.|+-.+. ..+|.+-++..+.....+.+ ... ..+.|++.+++-
T Consensus 133 ~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~------~~~-~~~~P~g~~iy~ 200 (302)
T 3s25_A 133 RIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC------NCY-KPVVLDDTNVYY 200 (302)
T ss_dssp EEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS------CEE-EEEEEETTEEEE
T ss_pred EEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC------Ccc-ceeeecCCEEEE
Confidence 5566544332 2333322 356778888875554 56788888765544333321 121 235587777765
Q ss_pred EeCC--CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEEeCCC
Q 016187 254 GSKD--GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM--DQKLIIWDLQH 309 (394)
Q Consensus 254 g~~d--g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~--dg~i~iwd~~~ 309 (394)
.... ..|...++.... ...+.. ..+ ..|+|++.+|.-++. .+.|..-++..
T Consensus 201 t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 201 MDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred EEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 5433 367777776543 223322 233 236777777765532 34455555543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=81.58 E-value=32 Score=31.60 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=57.9
Q ss_pred CEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc---eeeeec-----c----cCcCeEEEEECCC----CCeEEEEeC--
Q 016187 151 GVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA---YLNMFS-----G----HGSSVTCGDFTPD----GKTICTGSD-- 211 (394)
Q Consensus 151 ~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~---~~~~~~-----~----h~~~v~~~~~~~~----~~~l~s~~~-- 211 (394)
....++|.|++. .++++...|.|++++..... .+..+. + .......++|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 456799999986 45556778999999754321 111111 1 1345778999996 333333221
Q ss_pred CC----------cEEEEcCCC----------CceEEEEc-CCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 212 DA----------TLRVWNPKS----------GENIHVIR-GHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 212 dg----------~i~vwd~~~----------~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
++ .|.-|.+.. .+.+..+. ....| ....|.|.|||.++++-+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCCC
Confidence 11 333354432 11222222 11223 35789999999888776553
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.58 E-value=10 Score=38.70 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=34.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888899999999999999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 394 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-45 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-40 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-39 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-33 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-33 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-25 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-18 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-27 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-27 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-22 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-25 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-21 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-20 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-20 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-19 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-19 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-18 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-15 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-14 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-16 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-16 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-12 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-12 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-09 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 5e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.004 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 6e-04 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 0.001 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 0.003 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 156 bits (393), Expect = 4e-45
Identities = 69/308 (22%), Positives = 142/308 (46%), Gaps = 24/308 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH+ V+ + F ++ S D +++WD +G+ + TL+G V+ +S+ G
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++ + S D T+ +W+ + GH +V+ P+G I + S D T+++W ++
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE 282
G + GH + + D TL S S D +V + + T + + L H +E
Sbjct: 133 GYCVKTFTGHREWV---RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 283 CIGF--------------------SRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDG 321
CI + + P+ +GS D+ + +WD+ + T H++
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381
V +++ K++++ D +RVWD + C++T + H + ++ ++V+ S+
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 382 DGTARVFE 389
D T +V+E
Sbjct: 310 DQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 143 bits (361), Expect = 2e-40
Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 19/308 (6%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+ SGH V V P +++ + D W GD+ ++GH DSV ++F
Sbjct: 11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
G+LLAS D +++WD T+ G V VS P G +++ S D T+ MW
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--- 234
+ F+GH V DG I + S+D T+RVW + E +R H +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 235 --------------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
G LSGS+D ++ M +++TG + +LV H +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCV 339
+ + F + + + D+ L +WD ++ T + HE VT L + T+ YVVTG V
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 340 DGKVRVWD 347
D V+VW+
Sbjct: 310 DQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.7 bits (187), Expect = 3e-16
Identities = 26/132 (19%), Positives = 44/132 (33%)
Query: 45 SDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ 104
+ S S + +G D W ++ G +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
GH + V + F G+ + S D +++WD + TL V + +H V
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 165 LAGSEDSTVWMW 176
+ GS D TV +W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.4 bits (124), Expect = 3e-08
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ-HSLPRSTCDHEDGVT 323
I +L H + + F + S D + +WD + R+ H D V
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
+ + + K + + D +++WD +C+RT GH + ++S+ + D +VS S D
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 384 TARVFEIADFK 394
T +++E+
Sbjct: 124 TIKMWEVQTGY 134
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 5e-08
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 305 WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI 364
W + + H VT +++ +V+ D ++VWD +GD RT GH D++
Sbjct: 3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62
Query: 365 QAISVSAHQDF 375
Q IS
Sbjct: 63 QDISFDHSGKL 73
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 141 bits (354), Expect = 4e-39
Identities = 57/289 (19%), Positives = 108/289 (37%), Gaps = 3/289 (1%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
V G D+ ++N S + T +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE 282
E HT + L+++ D+ L +SG+ D S + ++ G + H I
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 283 CIGFSRSSPWAATGSMDQKLII---WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339
I F + ATGS D + Q + S + G+T + + + + ++ G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
D VWD+L D +GH + + + V+ + + S D +++
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 125 bits (313), Expect = 3e-33
Identities = 57/296 (19%), Positives = 106/296 (35%), Gaps = 10/296 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
GH ++Y++ D+ L+ + D K W + I V + A++
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVW 174
G +A GGLD + I++ + + G R D+T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
+W+ + F+GH V PD + +G+ DA+ ++W+ + G GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-- 225
Query: 235 HTEGLTCLTISADSTLALSGSKDGSV--HMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292
+ + + +GS D + + + S + I + FS+S
Sbjct: 226 -ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 293 AATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
G D +WD + H++ V+CL V TG D +++W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (313), Expect = 5e-33
Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 48/330 (14%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG------------- 151
H V + FS DG+ LA+G + Q++ S G+L L
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 152 -----VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206
+ V + P G + G+ED + +W+ + + + GH + D+ P G +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266
+GS D T+R+W+ ++G+ T D +GS D +V + +
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLT---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 267 TGKVVSSLVS-------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-- 317
TG +V L S H DS+ + F+R +GS+D+ + +W+LQ++ +S
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 318 -----------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366
H+D V + +Y+++G D V WD SG+ + GHR+++ +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 367 ISVSAHQDF------LVSVSLDGTARVFEI 390
++V+ + S D AR+++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (260), Expect = 1e-25
Identities = 74/287 (25%), Positives = 116/287 (40%), Gaps = 23/287 (8%)
Query: 44 GSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI 103
A N + + +T + SV SP D +ATG D W I +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMIL 159
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
QGH+ + SL + G L SG D V+IWD +G TL G G
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219
Query: 164 VLAGSEDSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
+ AGS D V +W+++ + +GH SV FT DG+++ +GS D +++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 217 VWNPKSGENI---------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
+WN ++ N + H + + + + + LSGSKD V + +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Query: 268 GKVVSSLVSHTDSIECIGFSRSSPWA------ATGSMDQKLIIWDLQ 308
G + L H +S+ + + S ATGS D K IW +
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.5 bits (207), Expect = 1e-18
Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 29/269 (10%)
Query: 154 WVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNM----FSGHGSSVTCGDFTPDGKTICT 208
+ + L + ++N +++ H S V C F+ DG+ + T
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79
Query: 209 GSDDATLRVWNPKSGENIHVIRGH---------------PYHTEGLTCLTISADSTLALS 253
G + T +V+ G + + P + + S D +
Sbjct: 80 GCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138
Query: 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR 313
G++D + + +I K+V L H I + + S +GS D+ + IWDL+
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198
Query: 314 STCDHEDGVTCLMWL-GTSKYVVTGCVDGKVRVWDSLSGDCVRT-------FSGHRDAIQ 365
T EDGVT + G KY+ G +D VRVWDS +G V +GH+D++
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 366 AISVSAHQDFLVSVSLDGTARVFEIADFK 394
++ + +VS SLD + +++ + +
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (271), Expect = 2e-27
Identities = 68/342 (19%), Positives = 128/342 (37%), Gaps = 55/342 (16%)
Query: 92 WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
WR + ++GH D V + G + SG D +++W +G TL G GG
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 152 VEWVSWHP--------------------------------------RGHIVLAGSEDSTV 173
V V++GS D+T+
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
+W+ + L++ GH ++V C + + + +G+ D ++VW+P++ +H ++GH
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293
++ D +SGS D S+ + ++ TG + +L H +
Sbjct: 178 NR-----VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL 230
Query: 294 ATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351
+G+ D + IWD++ L ++ +V+T DG V++WD +G
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290
Query: 352 DCVRTF-----SGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
+ +R G + I S + S +GT
Sbjct: 291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (200), Expect = 6e-18
Identities = 57/266 (21%), Positives = 112/266 (42%), Gaps = 17/266 (6%)
Query: 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
++ +V C V +G D W I G + GH +V
Sbjct: 82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141
Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
DG+ + SG D +V++WDP + TL+G S G V++GS D+
Sbjct: 142 C--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDT 197
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
++ +W+ + ++ +GH S + + +G+ D+T+++W+ K+G+ + ++G
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-----HTDSIECIGF 286
H + + ++ S DG+V + ++ TG+ + +LV+ + I
Sbjct: 256 PNKHQS--AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 287 SRSSPWAATGSMD----QKLIIWDLQ 308
S + A GS + KL++ D
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 8e-27
Identities = 59/333 (17%), Positives = 112/333 (33%), Gaps = 10/333 (3%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL 122
S YS + D + D I + H + V ++ S + +
Sbjct: 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66
Query: 123 ASGGLDGLVQIWDPSSGNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
+GG G V++WD S K + + P G ++ G E ST+ +W+
Sbjct: 67 YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
S+ C + S + + V + +
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
+C+ IS D T +G D +V ++ G+ + T I +G+ + W A G
Sbjct: 186 A-SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGM 243
Query: 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357
+ + + HE V L + K+ V+ D + W + G +
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303
Query: 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
++ + +S ++V+ S D A V+E+
Sbjct: 304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.9 bits (229), Expect = 9e-22
Identities = 55/293 (18%), Positives = 93/293 (31%), Gaps = 14/293 (4%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-----GHKDSVSSLAFS 116
H + V +V S V TGG W I+ S + + + S
Sbjct: 49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
DG L GG + IWD ++ + ++ P + + D +
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
+W+ + F GH +C D + DG + TG D T+R W+
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL----REGRQLQQHD 222
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
T + L G + +V ++++ H + + F+ W
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFV 281
Query: 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
+ D L W + V KY+VTG D K V++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 4e-13
Identities = 54/291 (18%), Positives = 92/291 (31%), Gaps = 10/291 (3%)
Query: 110 VSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
S + DGQ+ D L+ P TL G V V+ V G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG 70
Query: 169 EDSTVWMWNADRAAYLN-----MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
V +W+ + + + PDG T+ G + +TL +W+ +
Sbjct: 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Query: 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
IS DS + S DG++ + ++ +V HTD C
Sbjct: 130 TPRIKAELTSSAPACYAL-AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 284 IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKV 343
I S TG +D + WDL+ D + L + T +++ G V
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV 248
Query: 344 RVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
V ++ H + ++ + + VS D +
Sbjct: 249 EVLH-VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 3e-25
Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 21/299 (7%)
Query: 101 SEIQGHKDSVSS-LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
I ++ D Q + SG D ++IWD ++ K L G G V + +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
R + + S + D + + + + T S D ++ VW+
Sbjct: 66 R----VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279
S +I + R H + D +S S D ++ + N +T + V +L H
Sbjct: 122 MASPTDITLRRVLVGHRA--AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339
I C+ + +GS D + +WD++ + + + +K +V+G
Sbjct: 180 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVSGAY 236
Query: 340 DGKVRVWDSLSGD---------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
DGK++VWD ++ C+RT H + + + +VS S D T +++
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV--FRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.4 bits (225), Expect = 4e-21
Identities = 33/317 (10%), Positives = 92/317 (29%), Gaps = 29/317 (9%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPR 160
Q KD +S + LL DG + ++ L + ++
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 161 G--HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
I + + + + ++ + + + C + S D + V
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 219 NPKSGENIHVIRGHP---YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275
+P++ + + + T+ +S+ + G + V + + + +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 276 SHTD----SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST---------------- 315
+ + + A S+D ++ +
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375
+ V + + K++ T DG + W+ + ++ F+ + + ++ +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNI 306
Query: 376 LVSVSLDGTARVFEIAD 392
L + D T + D
Sbjct: 307 LCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.7 bits (184), Expect = 9e-16
Identities = 33/342 (9%), Positives = 85/342 (24%), Gaps = 32/342 (9%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLA 114
I D + + P +L+ D ++ + ++ +K +
Sbjct: 5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 115 FSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
F + + G + G + D L + G L + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGD-------FTPDGKTICTGSDDATLRVWNPKSGENI 226
R + + + + + G +++ ++ + E+
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 227 HV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG---------------KV 270
+ I + + + S DG V + ++
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330
+ + I FS + T D + W+LQ + + + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372
+ D + +T + +I I +
Sbjct: 304 DNILCLATSDDTFKTN----AAIDQTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 9e-10
Identities = 20/218 (9%), Positives = 54/218 (24%), Gaps = 13/218 (5%)
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243
+ + ++ P + S D +L V+ + + L C
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 244 ISADS--TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301
++ + + + + + I + + + + C S D
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 302 LIIWDLQHSLPRSTCDHEDGVT-------CLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354
+ + D ++ S ++ G + +V+ + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 355 RT----FSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
+ Q+ S+DG V
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (135), Expect = 1e-09
Identities = 33/279 (11%), Positives = 73/279 (26%), Gaps = 28/279 (10%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSVTCGDFT 200
+ P + + P ++L S D ++ ++ D A L + + C +F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 201 PD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
+ I G+ + + + + + + D +A S
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 260 VHMV----NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST 315
V + + + + +S G + ++ + L +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 316 CDHEDG-----VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS------------ 358
E G + + +DG+V V S
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245
Query: 359 ---GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ +I S FL + DG + + K
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 3e-06
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC----DHEDGVTC 324
++V + D I I S S D L ++ ++ + C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 325 LMWLGTSKYVVTGC 338
++ + +
Sbjct: 62 CNFIDNTDLQIYVG 75
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.002
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 353 CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392
V+ +D I I + + L+ S DG+ V++
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.5 bits (220), Expect = 2e-20
Identities = 56/361 (15%), Positives = 117/361 (32%), Gaps = 29/361 (8%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMD 118
S + + A + D T +A + + + + W E++ H V+ + ++ D
Sbjct: 4 SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
+ + G D +W K + V W P GS + +
Sbjct: 63 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 177 N----ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
D ++ S+V D+ P+ + GS D R+++ E
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 233 PYHTE---------------GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277
P+ ++ + + SA+ + S D +V + + V++L S
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242
Query: 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337
T + + F S A G ++ + S D G +
Sbjct: 243 TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA----HQDFLVSVSLDGTARVFEIADF 393
+D K S + S H++++ ISV + + +DG ++++
Sbjct: 303 NLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
Query: 394 K 394
+
Sbjct: 362 E 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 1e-09
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 7/172 (4%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
S V+ V S + VA D ++ + + + ++ F
Sbjct: 195 FESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
+ L+A+G D ++ S K + G + S + D
Sbjct: 254 ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKT----ICTGSDDATLRVWNPKSGEN 225
+ AA + S H +SV+ GK CT D + +W+ +S E+
Sbjct: 313 SA-AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.0 bits (216), Expect = 9e-20
Identities = 45/368 (12%), Positives = 110/368 (29%), Gaps = 56/368 (15%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDS 109
+ + H +++SV+ + + GD W D + HK
Sbjct: 6 TANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 110 VSSLAF-------SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ + + + L+A+ G + + + + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
L + + + + + + F P + + + + + +
Sbjct: 123 WALKWGASNDRLLSH------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV------HMVNITTGKVVSSLVS 276
+ ++ T + IS +A +G +G+V + + + S+++
Sbjct: 177 ------VESPMTPSQFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIW-----------------DLQHSLPRSTCDHE 319
+++SI + FS A H
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQ----AISVSAHQDF 375
V L + + + + + DGK+R WD + + + T + H D I+ ++V H D
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 349
Query: 376 LVSVSLDG 383
L +
Sbjct: 350 LAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 2e-11
Identities = 49/336 (14%), Positives = 96/336 (28%), Gaps = 63/336 (18%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----------HKDSVSS 112
H D + ++ + LVAT F+RI + D ++ K S +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 113 LAFSMDG-----QLLASGGLDGLVQIWDPSSGNLKC------------------TLEGPG 149
L + L + + G IW + + P
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTV------WMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
V RG I G + TV + + + +S+ F+P G
Sbjct: 185 QFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243
Query: 204 KTICTGSDDATLRVW-------------NPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250
+ D + + G H+ + L+ +
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303
Query: 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310
S DG + ++ T + +++L H D IE + G + ++D+
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA--VDEHGDSLAEPGVFDV--- 358
Query: 311 LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346
+ G M ++ + C+D +R +
Sbjct: 359 -----KFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC------VRTFSGHRDAIQAISV-- 369
H+ + + + + V+ DG ++VWD+ D + H+ + + V
Sbjct: 13 HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 370 -----SAHQDFLVSVSLDGTARVFEIAD 392
+ + + S G + I
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.002
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
++ HS V S++ + + + + G D K FW + + + + H D +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335
Query: 112 ----SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157
LA G LA G+ + G + V
Sbjct: 336 IEEDILAVDEHGDSLAEPGVFD---VKFLKKGWRSGMGADLNESLCCVCL 382
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 85.3 bits (209), Expect = 3e-19
Identities = 36/292 (12%), Positives = 74/292 (25%), Gaps = 12/292 (4%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
L + G + V S P G+ +G
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 170 DSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
V W V + + K I +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
+ + +SGS D +V + K S+ HT + + ++
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE--------DGVTCLMWLGTSKYVVTGCV 339
A+ D +++++ + + V L W + +
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 340 DGKVRVWDSLSGDCVRTFSGH-RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
D +++W+ + +T R Q + + + LVS+S +G
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.1 bits (146), Expect = 5e-11
Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 11/261 (4%)
Query: 57 THIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLA 114
T I++ HS + SP A+G + + + I V ++
Sbjct: 51 TEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109
Query: 115 FSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
+ + + +A+ G + + R +++GS+D+
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
TV ++ + + F H V + PDG + D T+ ++N G V
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229
Query: 232 HPYHT----EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SIECIGF 286
+ LT S D T S S D ++ + N+ T KV ++ T + +G
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289
Query: 287 SRSSPWAATGSMDQKLIIWDL 307
+ + S + + +
Sbjct: 290 IWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.1 bits (141), Expect = 2e-10
Identities = 30/255 (11%), Positives = 61/255 (23%), Gaps = 11/255 (4%)
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
G + P G + + ++V+ +++ H T +P G +G
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 210 SDDATLRVWNPKSGENIHVIR----------GHPYHTEGLTCLTISADSTLALSGSKDGS 259
+R+W+ +I D
Sbjct: 77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136
Query: 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE 319
N+T + V S S S +
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379
++ T +G + D H ++ ++ S + S
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 380 SLDGTARVFEIADFK 394
S D T +++ +A K
Sbjct: 257 SADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 8e-08
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 92 WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
D + + H SV L +S DG +AS D ++IW+ ++ ++ T+
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 152 VEWV-SWHPRGHIVLAGSEDSTVWMWNAD 179
+ +++ S + + N +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.7 bits (210), Expect = 4e-19
Identities = 55/350 (15%), Positives = 111/350 (31%), Gaps = 62/350 (17%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH SV + + + +G D +++++D + L G GGV + + G
Sbjct: 8 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPK 221
+V ++ + + + GS D TL VW
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 222 SGENIHVIRGHPYHTEGL------------------TCLTISADSTLALSGSKDGSVHMV 263
++ + + T+S + +SGS D ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186
Query: 264 NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS------------- 310
++ K + L HTD I + + SMD + IWDL++
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246
Query: 311 --------------------------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344
R H ++ + S ++ + +
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 306
Query: 345 VWDSLSGDCVR-TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
+++ SG V D I +++ + + +V DG + + EI DF
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL-EILDF 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 83.8 bits (205), Expect = 2e-18
Identities = 32/326 (9%), Positives = 82/326 (25%), Gaps = 25/326 (7%)
Query: 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
+ + + V G + + A + + + +V ++
Sbjct: 32 SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 91
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG------ 167
+G+ + D +G + + + G
Sbjct: 92 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151
Query: 168 ----SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
+ +++ + S F D K + S + +
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210
Query: 224 ENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKDGS-------VHMVNITTGKVVS 272
+ P+ + S + +G D + V+ +++
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332
L S + + L+ +D++ R + ++ +T L K
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRLSADRK 327
Query: 333 YVVTGCVDGKVRVWDSLSGDCVRTFS 358
V+ DGK+ + + RT
Sbjct: 328 TVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 73.0 bits (177), Expect = 8e-15
Identities = 41/352 (11%), Positives = 87/352 (24%), Gaps = 37/352 (10%)
Query: 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
++ SP D L+A + F ++ + + D ++
Sbjct: 4 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIH 60
Query: 126 GLDG--LVQIWDPSSGNLKCTLEGPGGGVEWVS---------WHPRGHIVLAGSEDSTVW 174
G + I+D +G + E G + R I+ E
Sbjct: 61 GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
+ R A + F+ +S P G + V++ + + + +
Sbjct: 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 180
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-------VSSLVSHTDSIECIGFS 287
ADS S + + S
Sbjct: 181 DY----APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 288 RSSPWAATGSMDQK-----LIIWDLQHSLPRSTCDHEDGVTCLMWLGTS---KYVVTGCV 339
S + G D ++ R E + Y
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
G + +D + + ++ + + +SA + ++ DG F +
Sbjct: 297 KGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
+ + + G +KG + + ++ K++++
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT--RKVTEVKNNLTD 319
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146
L S D + + DG + + + T+E
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 79.3 bits (193), Expect = 3e-17
Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 2/290 (0%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
GH ++++L+ S DG+ L S +G + WD S+G +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
+ S D + + A + + + + +
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE 282
G+ V + L+ S + +++ K + T
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187
Query: 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342
+ + + + + + + S H V C+ W + + TG +D
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 343 VRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD--FLVSVSLDGTARVFEI 390
V VW+ A+ +++ + +VS D + + +
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 70.0 bits (169), Expect = 5e-14
Identities = 38/296 (12%), Positives = 89/296 (30%), Gaps = 11/296 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFS 116
+ GH+ + +++ S D + + + W I+ G H ++ + +
Sbjct: 6 QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G L D L + SG + + + +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAVAACYKH 121
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
A + + +C + D + + G D+ + V+ V
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-SPWAAT 295
+ + +A S+ + V ++ + + + AT
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 296 GSMDQKLIIWDL----QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
GS+D +I+W++ H + V ++WL +V+ D ++ W+
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 3e-05
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
+ + + + N A+ N ++ H + V C ++PD + TGS D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266
++ VWN + +I + + + I + T +S +D ++ N+
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 76.0 bits (185), Expect = 6e-16
Identities = 36/336 (10%), Positives = 82/336 (24%), Gaps = 45/336 (13%)
Query: 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA----------SGGL 127
A + F G I G + + + DG +A G
Sbjct: 19 NDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGER 76
Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA---------GSEDSTVWMWNA 178
V+++DP + +E P V +P + S V + +
Sbjct: 77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 136
Query: 179 DRAAYLNMFSGHGSS-------VTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH--V 228
+ A+ M T DG + T + + + +
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV------------SSLVS 276
I Y + + + + G + +
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL--GTSKYV 334
H + + +++ D + + + + +
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY 316
Query: 335 VTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
D + + D+ SG+ +R+ + Q I+ +
Sbjct: 317 ALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 3/153 (1%)
Query: 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
++ ++ +++ + S DA + + + ++ H+
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL--AGSED 170
V + D +G E G ++ ++ +L + D
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD 322
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
T+++ +A+ L + G G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 4/153 (2%)
Query: 11 DDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSV 70
R V+ + IH++ + D + + + H
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264
Query: 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLD 128
G+ ++ + + + S+ S D + L A D
Sbjct: 265 LLVD-QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGD 322
Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161
+ I D SG ++ G G + ++ G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 30/244 (12%), Positives = 59/244 (24%), Gaps = 30/244 (12%)
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI----------CTGSDDATL 215
+ + ++ + + + M G + DG I G +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLT------CLTISADSTLALSGSKDGSVHMVNITTGK 269
V++P + I + LT + L S +V +V++
Sbjct: 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140
Query: 270 VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-------TCDHEDGV 322
L F + D L + E +
Sbjct: 141 FKRMLDVPDCY---HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197
Query: 323 TCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC--VRTFSGHRDAIQAISVSAHQDFLVSVS 380
+ + +V GK+ D SGD + +A +A V+
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257
Query: 381 LDGT 384
Sbjct: 258 RALD 261
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 20/213 (9%), Positives = 44/213 (20%), Gaps = 23/213 (10%)
Query: 199 FTPDGKTI-----CTGSDDATLRVWNPKSGENIHVIRGHPYHT-----EGLTCLTISADS 248
PD + + + V + ++G I +I G +G S
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVF 68
Query: 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHT-------DSIECIGFSRSSPWAATGSMDQK 301
+ G + V + + T + + +
Sbjct: 69 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128
Query: 302 LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR------ 355
+ + + ++ C DG + +
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188
Query: 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
I + S LV + G
Sbjct: 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.7 bits (184), Expect = 6e-16
Identities = 40/317 (12%), Positives = 90/317 (28%), Gaps = 25/317 (7%)
Query: 99 WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS- 156
+ ++ + L++ +A G V+ D + ++ G G V+
Sbjct: 9 IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68
Query: 157 --WHPR--GHIVLAGSEDSTVWMWNAD--------RAAYLNMFSGHGSSVTCGDFTPDGK 204
+ P + +G E V +W + F ++ + +G+
Sbjct: 69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128
Query: 205 TI--CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
+ D + SG ++ + GH ++ + +
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188
Query: 263 VNITTGKVVSSLV-SHTDSIECIGFSRS-----SPWAATGSMDQKLIIWDLQHSLPRSTC 316
+ + FS + +
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248
Query: 317 DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH---Q 373
+ G + S+ T D +RVWD + CV+ ++ + + V
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 374 DFLVSVSLDGTARVFEI 390
++S+SLDGT +E+
Sbjct: 309 GRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.5 bits (160), Expect = 9e-13
Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 20/280 (7%)
Query: 48 ENTEQPDDSTHIFSGH-SDEVYSVACSPT-DATLVATGGGD--------DKGFFWRINQG 97
++ + F+GH S V +V SP + + +G +
Sbjct: 46 DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105
Query: 98 DWASEIQGHKDSVSSLAFSMDGQLLA--SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
+ SE Q +S +++ +G+ L G D SGN + G +
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165
Query: 156 SWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPD-GKTICTGS 210
+ D ++ GS V +F+PD G+ + T
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225
Query: 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
D + ++ KSGE + I +G DS + D ++ + ++TT K
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285
Query: 271 VSSLVSHTDSIECIGFSRSSP---WAATGSMDQKLIIWDL 307
V + + + S+D L ++L
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 34/267 (12%), Positives = 75/267 (28%), Gaps = 22/267 (8%)
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTV---WMWNADRAAYLNMFSGHGSS-VTCGDFTP--DG 203
+S+ P + + S + + F+GHGSS VT F+P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPY-----HTEGLTCLTISADSTLALSGSK-- 256
+ +C+G + + VW + + + + ++ ++ + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL-----IIWDLQHSL 311
D ++ +G + + H+ I +S P + D +
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW----DSLSGDCVRTFSGHRDAIQAI 367
R+ V + + S V + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+V D T RV+++ K
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSK 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (172), Expect = 2e-14
Identities = 35/290 (12%), Positives = 70/290 (24%), Gaps = 14/290 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
I GH +++L + L SG DG + W SS + + +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQE 59
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
+D+ S+ G +
Sbjct: 60 YSSISWDDTLKVNGITKH--EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE 282
N L + + S + K +S +++
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 283 CIGFSRSSP-WAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341
G S + K W + S + V TG +D
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 342 KVRVWD-SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
+ ++ ++ + H+D + + LVS D + + +
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.0 bits (156), Expect = 2e-12
Identities = 43/296 (14%), Positives = 85/296 (28%), Gaps = 15/296 (5%)
Query: 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
D+ SGH+ + ++ +P + +G D + W +S Q H + + SL
Sbjct: 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSL 52
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
S + + D L + + +L +
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
+ + + + S + V G + + SD I P
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172
Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293
T + L + + T+
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI--SWKPAEKGANEEEIEEDLV 230
Query: 294 ATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
ATGS+D + I+ ++ + H+DGV L+W S +V+ D ++ W+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 26/192 (13%), Positives = 48/192 (25%), Gaps = 21/192 (10%)
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243
L SGH +T P + +GS D + W+ S H+ + L
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQD--------HSNLIVSLD 53
Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303
S + D S + + + + A + D L+
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKH---------EFGSQPKVASANNDGFTAVLTNDDDLL 104
Query: 304 IWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363
I + + + V + S + R
Sbjct: 105 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164
Query: 364 IQAISVSAHQDF 375
IS+S + +
Sbjct: 165 PSYISISPSETY 176
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (82), Expect = 0.004
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLM 326
+V+ ++ H I + + +GS D +++ W DH + + L
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLD 53
Query: 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372
+Y D + + + +V +
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 99
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.7 bits (166), Expect = 2e-13
Identities = 31/328 (9%), Positives = 78/328 (23%), Gaps = 40/328 (12%)
Query: 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD--SVSSLAFSMDGQ-LLASGGLDGLVQIWD 135
+ DK + I + + G+ A+ + D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 136 PSSGNLKCTLEGPGGG-----------------VEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+G ++ + R + + + V +++A
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----- 233
+ + F +T + DG + D + + I+
Sbjct: 123 ETLSRRKAFEAPRQ-ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 234 -------------YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
T D A + + +++ TG++ V D
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ + L +DL+ + + V G
Sbjct: 242 F-YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL 300
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAIS 368
G + +D+ + + +A +++
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.1 bits (162), Expect = 5e-13
Identities = 29/314 (9%), Positives = 66/314 (21%), Gaps = 42/314 (13%)
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRG-HIVLAGSEDSTVWMW 176
+ + + + D + + G P G ++ ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 177 NADRAAYLNMFSGH-----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--- 228
+ L S+ +PDGKT+ L + + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 229 -----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
R +T L + D + +D V G +V + E
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAET 179
Query: 284 IGFSRSSPWAATGSM-----------------------DQKLIIWDLQHSLPRSTCDHED 320
L+ DL+
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239
Query: 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVS 380
V + +D ++ + +++VS +
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGG 298
Query: 381 LDGTARVFEIADFK 394
G ++ +
Sbjct: 299 ALGDLAAYDAETLE 312
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 25/274 (9%), Positives = 56/274 (20%), Gaps = 38/274 (13%)
Query: 47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--- 103
++ A SP TL Q +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 104 -------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-- 154
++ LA++ DG L G D V + + ++
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 155 --VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM------------------FSGHGSSV 194
++ + + + D A
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243
Query: 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
P L ++ + +I + + +S D + G
Sbjct: 244 FSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLG 297
Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
G + + T + + ++ + R
Sbjct: 298 GALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 68.2 bits (165), Expect = 2e-13
Identities = 32/326 (9%), Positives = 69/326 (21%), Gaps = 41/326 (12%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133
+ + + K + + D + G +
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 134 WDPSSGNLKCTL------EGPGGGVEWVSWHPRGHIVLAGSEDST--------------V 173
D + G + + P G V A + V
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV----- 228
+ A V DG G D + V K + +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186
Query: 229 --------------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
+ T D + V++ TGK +
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 246
Query: 275 VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV 334
+ + G + +L +DL+ + + C+ + +
Sbjct: 247 FADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL 306
Query: 335 VTGCVDGKVRVWDSLSGDCVRTFSGH 360
G + V++ + + V+
Sbjct: 307 YLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.0 bits (115), Expect = 4e-07
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
+ + T F+ ++ ++ SP D + + + Q
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA--KYDLKQRKLIKAA-NLDH 292
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156
+ +AF G L GG + +++P + ++ PGG + +
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 3/138 (2%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDG 119
+Y++A D AT + G ++ + + S
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
G + +D L V++ +G + G + + ++N D
Sbjct: 264 PNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 180 RAAYLNMFSGHGSSVTCG 197
+ G ++
Sbjct: 322 TLEKVKNIKLPGGDMSTT 339
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 64.2 bits (155), Expect = 6e-12
Identities = 27/298 (9%), Positives = 62/298 (20%), Gaps = 35/298 (11%)
Query: 96 QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
G + S S A G V+++DP + +E P V
Sbjct: 63 LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122
Query: 156 SWHPRG--------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
++ S + A+ + T
Sbjct: 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHY 179
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVN 264
GS A+L + + I G + L + + +
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239
Query: 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI-------------------IW 305
+ +++ + + F + + I
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299
Query: 306 DLQHSLPRSTCDHEDGVTCLMWL--GTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+ ++ G S + ++D+ S + +
Sbjct: 300 TASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.1 bits (139), Expect = 6e-10
Identities = 26/336 (7%), Positives = 64/336 (19%), Gaps = 51/336 (15%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRG 161
G A S + G + W G G + G
Sbjct: 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSG 76
Query: 162 HIVLA----------GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD-------FTPDGK 204
G V +++ + +
Sbjct: 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136
Query: 205 TI-CTGSDDATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGS 259
+ + + + + + H + T S ++LA S
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196
Query: 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-H 318
+ + S + + + + ++ D +
Sbjct: 197 AAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN 252
Query: 319 EDGVTCLMWLGTSKYVVTGCVDGK-------------------VRVWDSLSGDCVRTFSG 359
E G + +V + + G S
Sbjct: 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312
Query: 360 HRDAIQ-AISVSAHQDFLVSVSLDGTARVFEIADFK 394
D+ + D + + +++ A +
Sbjct: 313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 64.4 bits (156), Expect = 7e-12
Identities = 34/333 (10%), Positives = 85/333 (25%), Gaps = 26/333 (7%)
Query: 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
T + + + + + +V S G+ L G DG V + D
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92
Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGS 192
E +AG+ + + + + S G
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152
Query: 193 SVTCGDFTPDGKT------------ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
+ ++ P+ + I + + + + N+ L
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLH 210
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
+ ++ + + +V T + ++ G + G +
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
Query: 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV-RTFSG 359
+ D +L +G W + G ++ + V T +
Sbjct: 271 TSHMGDDSVAL---IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 327
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392
+ +++V + + D + IA+
Sbjct: 328 EAEISGSVAVFDIKA-MTGDGSDPEFKTLPIAE 359
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (116), Expect = 5e-07
Identities = 22/200 (11%), Positives = 51/200 (25%), Gaps = 14/200 (7%)
Query: 199 FTPDGKTI--CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256
D + + T D + + + + E V+ + +SA +
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR 81
Query: 257 DGSVHMVNITTGKV-----VSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHS 310
DG V+M+++ + + + A + +I D +
Sbjct: 82 DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141
Query: 311 LPRST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAIS 368
P+ + + + + +
Sbjct: 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 201
Query: 369 VSAHQDFLVSVSLDGTARVF 388
+ + FL LDG+ R F
Sbjct: 202 EISAERFLHDGGLDGSHRYF 221
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 2e-05
Identities = 30/326 (9%), Positives = 71/326 (21%), Gaps = 35/326 (10%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-----------GHKDS 109
S S D +A + + +
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164
Query: 110 VSSLAFSMDGQ-LLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
V+++ S + + G + + D + NLK T + +
Sbjct: 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 224
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ + + L G + G AT + +
Sbjct: 225 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 284
Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
GHP + + + + S ++ T + + S+
Sbjct: 285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS---GSVAVF--- 338
Query: 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK----- 342
D + + + + V + V +GK
Sbjct: 339 -DIKAMTGDGSDPEFKTLPIAE--WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 395
Query: 343 --------VRVWDSLSGDCVRTFSGH 360
+ + + + + T +G
Sbjct: 396 LVVVDDKTLELKHVIKDERLVTPTGK 421
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 21/173 (12%), Positives = 52/173 (30%), Gaps = 20/173 (11%)
Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300
++ +++ G + +++ +T ++ + L + ++ S S + D
Sbjct: 25 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDG 83
Query: 301 KLIIWDLQHSLPRST------CDHEDGVTCLMWLGTSKYV-VTGCVDGKVRVWDSLSGDC 353
K+ + DL P + + T M KY + + D + +
Sbjct: 84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 143
Query: 354 VRTFSGHRDAIQAISVSA------------HQDFLVSVSLDGTARVFEIADFK 394
+ S +F+V+V G + + D
Sbjct: 144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 56.9 bits (136), Expect = 1e-09
Identities = 36/330 (10%), Positives = 75/330 (22%), Gaps = 34/330 (10%)
Query: 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
T + + I +V S G+ L G D + + D +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA 92
Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGS 192
E +AG+ + + + + S G
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 193 SVTCGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251
+V + P+ + S + + N K + ++ LT +I A L
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIGAAPFL- 209
Query: 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311
+ ++ + + S+ +A + +
Sbjct: 210 ---------ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK----TPHPGRG 256
Query: 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371
V LG + G + V G I
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHP 313
Query: 372 HQDFLV-------SVSLDGTARVFEIADFK 394
L + + VF++ +
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLD 343
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 3e-08
Identities = 17/209 (8%), Positives = 57/209 (27%), Gaps = 18/209 (8%)
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
+ + + + + D + + G +V + G+ + DA
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDAR 84
Query: 215 LRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVV 271
+ + + + E V I+ + + +++ T +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 272 SSLVSHTDSIECIGF-SRSSPWAATGSMDQKLIIWDLQ-------------HSLPRSTCD 317
+ + +++ + A S + I +++ +L ++
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346
+ W + +Y +T +
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAV 233
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 29/203 (14%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
+ + ++ D L A R A+ + V S +
Sbjct: 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-----GANFVHPKYGPVWSTS 271
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-------G 167
DG + G + L+G GGG ++ HP+ +
Sbjct: 272 HLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328
Query: 168 SEDSTVWMWNAD---------RAAYLNMFSGHGSSVTCGDFTPDGKTI-----CTGSDDA 213
+V +++ A V ++ G + +D +
Sbjct: 329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388
Query: 214 TLRVWNPKSGENIHVIRGHPYHT 236
L V + K+ + V++ T
Sbjct: 389 ALVVVDDKTLKLKAVVKDPRLIT 411
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 50.3 bits (118), Expect = 1e-07
Identities = 32/279 (11%), Positives = 67/279 (24%), Gaps = 4/279 (1%)
Query: 82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140
D + + I + S DG + + V I D ++ N
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
+ T+ + + ST+ + + G S +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALS 124
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
PDGK + ++ + + +G+ +A S SV
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ + + I + + + D + +
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 321 GVTCLMWLGTSKYV-VTGCVDGKVRVWDSLSGDCVRTFS 358
+ K V V V V D+ + T +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.4 bits (108), Expect = 2e-06
Identities = 35/276 (12%), Positives = 75/276 (27%), Gaps = 10/276 (3%)
Query: 124 SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAA 182
+ + + D +S + T+ G P G + +A + + V + +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242
+ S + T +TL V + S V L
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTVKTGKSPLGLA 122
Query: 243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
L ++ + D +V ++N T V++++ + +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182
Query: 303 IIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL---SGDCVRTFSG 359
+ D + T E + + VD + +
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242
Query: 360 HRDAIQAISVSAHQDFL-VSVSLDGTARVFEIADFK 394
D I+V+ + V++S T V + A
Sbjct: 243 GPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.5 bits (92), Expect = 5e-04
Identities = 33/295 (11%), Positives = 73/295 (24%), Gaps = 37/295 (12%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
SGG G V++ S + W G + + +
Sbjct: 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGW------------GITNESKEILGG 60
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSGE-----------NI 226
D+ H ++ D DGK + + + + I
Sbjct: 61 DQQ--YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAI 118
Query: 227 HVIRGHPY-HTEGLTC-----LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
H +R T + C + D T + ++ T V ++ +
Sbjct: 119 HGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGN- 177
Query: 281 IECIGFSRSSPWAATGSMDQKLIIW-DLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339
++ + +A + + + + R + + + G
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-D 236
Query: 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
V + R ++ + + F+ + L T V I
Sbjct: 237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 36.4 bits (84), Expect = 0.004
Identities = 26/215 (12%), Positives = 52/215 (24%), Gaps = 29/215 (13%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
+ + T +T ++ + + + A G G
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD 236
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
+ + + P + + + G TV + D+ ++
Sbjct: 237 -SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK--LDDL 293
Query: 187 FSGHGSSVTC-------------GDFTPDGKTICTGSDDATLRVWNPK------SGENIH 227
F F G T D+ + WN +G+ ++
Sbjct: 294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353
Query: 228 VIRG------HPYHTEGLTCLTISADSTLALSGSK 256
IR P H + AD + SK
Sbjct: 354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 3/103 (2%)
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
+ +A E + +WN + L + V +PD + + + + +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
+ LT ++ GS +
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS 108
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/264 (11%), Positives = 73/264 (27%), Gaps = 20/264 (7%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
+ +LA + DG + + G + P G V +++ G +V G
Sbjct: 30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWN 87
Query: 170 DSTVWMWNADRAAYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226
++ + + ++ + D + + S + + +
Sbjct: 88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147
Query: 227 HVIRGHPYHTEGLTCLTISADS------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
+ + +A+ L +S ++ + + + + +
Sbjct: 148 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ 207
Query: 281 IECIGFSRSSP---WAATGSMDQ-KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK---- 332
F+ + AT + I D ++ G T + + T
Sbjct: 208 TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 267
Query: 333 -YVVTGCVDGKVRVWDSLSGDCVR 355
YVVT + + VR
Sbjct: 268 IYVVTNGGMFLPPPTGVVPANVVR 291
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 36.9 bits (84), Expect = 0.003
Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 4/210 (1%)
Query: 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
+E ++ P G I + E + D + + V+ FT +G +
Sbjct: 26 VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVA 83
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
TG + ++ V + + L +T +D+ + S G++ ++++
Sbjct: 84 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 143
Query: 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVT--CL 325
L + + + + + L R D D +
Sbjct: 144 PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI 203
Query: 326 MWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
T+ V+G + + VR
Sbjct: 204 FVEQTNIDDFAFDVEGNLYGATHIYNSVVR 233
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.5 bits (83), Expect = 0.004
Identities = 30/298 (10%), Positives = 71/298 (23%), Gaps = 37/298 (12%)
Query: 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156
G++ +G S +A + ++ + + +QI+D G K G +
Sbjct: 13 GEFGVM-EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKR-DSQL 69
Query: 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
+P V+ S D V + + G + + + +
Sbjct: 70 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV 129
Query: 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
V I G+ H ++ V
Sbjct: 130 VECKVMRVIIFDQNGNVLHKF----------------------GCSKHLEFPNGVVVNDK 167
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT 336
I + G +++ + + + + +
Sbjct: 168 QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEI----------LIAD 217
Query: 337 GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIADF 393
+ + ++ G + Q V+ D +V S D ++
Sbjct: 218 NHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 274
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.39 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.37 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.29 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.28 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.24 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.24 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.22 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.18 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.1 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.9 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.75 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.56 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.17 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.12 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.11 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.1 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.09 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.08 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.92 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.78 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.76 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.69 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.48 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.43 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.26 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.94 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.7 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.27 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.67 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.43 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.06 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.04 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.25 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.61 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.22 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.15 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.76 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.6 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.07 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.29 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 87.67 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 82.05 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 80.18 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-47 Score=339.71 Aligned_cols=289 Identities=24% Similarity=0.493 Sum_probs=269.8
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
....+|+||.++|++|+|+|++++|+||+.|++|+|||+.+++.+.++.+|...|.+++|+|++.+++++..++.+..|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
....+....+.+|...+.++.|+|+++.+++++.|+.+++||+++++.+..+.. |...+.++.++|++.++++++.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc---CCCcceeeecccCCCEEEEEeCC
Confidence 998888888889999999999999999999999999999999999998888765 45678999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCC--------------------CeEEEEeCCCcEEEEeCCCCCcc-eec
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS--------------------PWAATGSMDQKLIIWDLQHSLPR-STC 316 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~--------------------~~l~s~s~dg~i~iwd~~~~~~~-~~~ 316 (394)
+.|++|++.+++.+..+..|...+.++.++|+. .++++++.|+.|++||+.+.... ...
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 244 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence 999999999999999999999999999998753 46899999999999999876543 345
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 317 DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|+|||.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-47 Score=342.72 Aligned_cols=285 Identities=20% Similarity=0.370 Sum_probs=255.7
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
+..+ +|...|++++|+|+|++|+||+ |+.|+|||+.++.. .....+|.+.|.+++|+|++++|++|+.|+.|+
T Consensus 45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~ 122 (337)
T d1gxra_ 45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence 4445 6999999999999999999997 89999999876532 223356888999999999999999999999999
Q ss_pred EEeCCc--cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 175 MWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 175 iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
+|++.. .+....+.+|...+.+++|+|++.++++++.|+.|++|++.+++....... |...+.++++++++..++
T Consensus 123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~---~~~~v~~l~~s~~~~~~~ 199 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence 999864 345567788999999999999999999999999999999999887766554 567899999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 332 (394)
+|+.|+.+++||+++++.+..+ .|...|.+++|+|++.+|++++.|+.+++||+..........|...|++++|+|+++
T Consensus 200 ~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~ 278 (337)
T d1gxra_ 200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCC
Confidence 9999999999999999988766 488999999999999999999999999999998887777788999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|++|+.||.|++||+.+++++..+. |...|++++|+|++++|++||.||+|+||++-
T Consensus 279 ~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999999999999999987765 78899999999999999999999999999973
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-46 Score=338.53 Aligned_cols=280 Identities=21% Similarity=0.355 Sum_probs=254.4
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-----EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-----~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
+|.+.|++++|+|+ +.+||||+ |+.|+|||+.++... ....+|.+.|.+++|+|+|++|++|+.|++|++||+
T Consensus 49 ~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 49 NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence 89999999999995 67899987 899999998765322 234679999999999999999999999999999998
Q ss_pred CCC--ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 137 SSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 137 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
... +....+..+...+..++|+|++.++++++.|+.+++|++.+++......+|...+.+++|+++++.+++++.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 754 455677888899999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|++||+++++.+..+. +...+.+++++|++.++++|+.|+.+++||+++++.. ....|...|.+++|+|++++|+
T Consensus 207 v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~ 281 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp EEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred ccccccccceeecccc----cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEE
Confidence 9999999998877664 4678999999999999999999999999999988765 4567999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+++.|+.|++||+..........|...|.+++|+|++++|++|+.||+|+|||+
T Consensus 282 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999998877777889999999999999999999999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-46 Score=344.51 Aligned_cols=306 Identities=25% Similarity=0.457 Sum_probs=260.1
Q ss_pred EecCCCeEEEEEcCCCeee----EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-----------
Q 016187 82 TGGGDDKGFFWRINQGDWA----SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE----------- 146 (394)
Q Consensus 82 sg~~d~~v~~w~~~~~~~~----~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~----------- 146 (394)
.+..++...+|+....+.. ....+|++.|+||+|||+|++||+|+ |++|+|||+.+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 4556777788886544321 22346999999999999999999987 8999999999988776553
Q ss_pred -------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 147 -------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 147 -------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
.+...|++++|+|++++|++|+.|+.|++|+...++.+..+.+|...|.++++++++..+++++.++.+++||
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d 191 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191 (388)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeee
Confidence 3455699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEe-------ccCCCCEEEEEECCCCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGKVVSSL-------VSHTDSIECIGFSRSSP 291 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~h~~~i~~v~~~~~~~ 291 (394)
..+......... .....++.+. +++.++++|+.|+.|++|++.+++.+..+ ..|..+|.+++|+|++.
T Consensus 192 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 267 (388)
T d1erja_ 192 LRTGQCSLTLSI----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267 (388)
T ss_dssp TTTTEEEEEEEC----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred cccccccccccc----ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence 998877665543 2334455554 57899999999999999999998876654 35888999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCc-------------ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 292 WAATGSMDQKLIIWDLQHSLP-------------RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
+|++++.|+.|++||+..... .....|...|.+++|+|++++|++|+.||.|++||+.+++++.++.
T Consensus 268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~ 347 (388)
T d1erja_ 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347 (388)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence 999999999999999865321 1223577889999999999999999999999999999999999999
Q ss_pred cccCceeEEEE------ccCCCEEEEEeCCCcEEEEeccC
Q 016187 359 GHRDAIQAISV------SAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 359 ~h~~~v~~l~~------~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+|.+.|.++++ +|++++|+|||.||+|+||+++.
T Consensus 348 ~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 99999999975 57899999999999999999863
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6e-46 Score=329.86 Aligned_cols=288 Identities=30% Similarity=0.500 Sum_probs=266.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....|.||+++|++|+|+|+ +.+||||+.|++|+|||+.+++.+.++.+|...|.+++|+|++.++++++.++.+.+|+
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp CSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ccEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 35679999999999999995 57899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
....+....+..+...+..+.|+|++..+++++.|+.+++|++.+++.+..+.+|...+.+++|+|++++|++++.|+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 99888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC--------------------CEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADS--------------------TLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
++|++.+++....+.. +...+.++.++|++ .++++|+.|+.|++||+++++++.++.
T Consensus 168 ~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 244 (317)
T d1vyhc1 168 RVWVVATKECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244 (317)
T ss_dssp EEEETTTCCEEEEECC---CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEeeccceeeEEEec---CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence 9999999988877765 45567777777653 478999999999999999999999999
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.|..+|.+++++|++.+|++++.||.|++||+.+..... ...|...|++++|+|++++|++|+.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999998765443 456899999999999999999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.2e-44 Score=322.04 Aligned_cols=288 Identities=24% Similarity=0.403 Sum_probs=255.6
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+..++|+||.++|++|+|+|++++||||+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.+++|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc----ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 178 ADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 178 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
.... .....+.+|.......... .+..+.....+...+.+............. +...+....+.+...++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccceecccccccccccccc-cccccccccccccccccccccccccccccc---cceeEeeeccccccceeEE
Confidence 7643 3345566777766554444 456788888899999998877665544433 4556888999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee---ccCCCCEEEEEEeCC
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST---CDHEDGVTCLMWLGT 330 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~ 330 (394)
|+.|+.|++||+++++++..+.+|..+|.+++|+|++.+|++++.|+.|++|++........ ..+...+.+++|+|+
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999987644332 345677999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|+|||.||+|++||
T Consensus 282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-44 Score=325.56 Aligned_cols=321 Identities=20% Similarity=0.359 Sum_probs=261.8
Q ss_pred eeeeeccCCcE-EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 57 THIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v-~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..+|.||.+.| .|++++ +++||||+.|++|+|||+.+++.+.++.+|.++|++++|+|+ .+|++|+.|++|++|+
T Consensus 5 ~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 56789999875 667664 458999999999999999999999999999999999999985 5899999999999999
Q ss_pred CCCCceEEEEecCCC--CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee-----------------------eeccc
Q 016187 136 PSSGNLKCTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-----------------------MFSGH 190 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~-----------------------~~~~h 190 (394)
....+.......... ......+++++.++++++.|+.|++|++.+..... ....|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 998887766554433 34456678889999999999999999987643221 11223
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
...+. .+.+++++++++..|+.|++||+.+++.+..... +...+.++.++|++.++++++.|++|++||+.++..
T Consensus 161 ~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 235 (355)
T d1nexb2 161 MASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235 (355)
T ss_dssp SSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred ccccc--ccccccceeeeecccceeeeeecccccceeeeec---cccccccccccccceeeecccccceEEeeecccccc
Confidence 33333 3456789999999999999999999888776654 345688999999999999999999999999999999
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEE-EEeCCCCEEEEEeCCCeEEEEECC
Q 016187 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-MWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+..+.+|...|.++++++ .+|++++.||+|++||+....... ..|...+.++ .+++++.+|++| .||.|++||++
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~ 311 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR 311 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred cccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence 999999999999999975 589999999999999998765433 3444455444 456677766665 58999999999
Q ss_pred CCeEEE-EeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 350 SGDCVR-TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 350 ~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++++++ .+.+|.++|++++|+|+ .++++++.||+++||-++
T Consensus 312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 999986 46789999999999986 578899999998877654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.9e-44 Score=320.97 Aligned_cols=282 Identities=14% Similarity=0.198 Sum_probs=246.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL- 184 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~- 184 (394)
+++.+..++++|+|+.|+.++ ++.|.+|++.+++....+.+|.+.|++++|+|++++|++|+.|++|++|++.+....
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 445667889999999999886 567999999999998899999999999999999999999999999999999876543
Q ss_pred -eeecccCcCeEEEEECCCCCeEEEEeC--CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE-EEEEeCCCcE
Q 016187 185 -NMFSGHGSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL-ALSGSKDGSV 260 (394)
Q Consensus 185 -~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~g~~dg~i 260 (394)
..+.+|..+|.+++|+|++++|++++. ++.+++|++.+++....+.+ |...|++++|+|++.+ +++|+.|+.|
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~---h~~~v~~v~~~~~~~~~l~sgs~d~~i 171 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG---QARAMNSVDFKPSRPFRIISGSDDNTV 171 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC---CSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred ccccccccCccccccccccccccccccccccccccccccccccccccccc---cccccccccccccceeeeccccccccc
Confidence 557889999999999999999999886 45699999998877665544 5678999999999885 7889999999
Q ss_pred EEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--------eccCCCCEEEEEEeCCCC
Q 016187 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--------TCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~~~~~v~~~~~~~~~~ 332 (394)
++||+++++....+..|..+|.++.++|+++++++++.|+.+++||+....... ..+|...|++++|+|+++
T Consensus 172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~ 251 (311)
T d1nr0a1 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251 (311)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999987653322 235788999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccC-ceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRD-AIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|++|+.||.|+|||++++++++.+..|.. ....+.+.+++++|++++.||.|++||.+
T Consensus 252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999999999999999999987654 23445566667889999999999999964
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-43 Score=316.01 Aligned_cols=279 Identities=19% Similarity=0.268 Sum_probs=239.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL- 141 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~- 141 (394)
+.+.+..++++|++ ..||.++ ++.+.+|++.+.+....+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.
T Consensus 16 ~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCC-CEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 34556678999965 4566654 56799999999998899999999999999999999999999999999999988764
Q ss_pred -EEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe-EEEEeCCCcEEE
Q 016187 142 -KCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGSDDATLRV 217 (394)
Q Consensus 142 -~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~v 217 (394)
...+..|.++|.+++|+|+++++++++. +..+++|++++++....+.+|...|++++|+|++++ |++|+.|+.|++
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i 173 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 3557889999999999999999988875 466999999999888899999999999999999885 789999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------cCCCCEEEEEECCCC
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------SHTDSIECIGFSRSS 290 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~h~~~i~~v~~~~~~ 290 (394)
||+++++....+.. |...|+++.++|+++++++++.|+.|++||+.+++.+..+. +|...|.+++|+|++
T Consensus 174 ~d~~~~~~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 174 FEGPPFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EETTTBEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred cccccccccccccc---ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 99999888777765 56789999999999999999999999999999988777653 478899999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcceecc-CC---CCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRSTCD-HE---DGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
++|++|+.||+|+|||+++........ |. ..+.++.| ++.+|++++.||.|++||.
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNP 310 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence 999999999999999998775544332 22 23444444 5668999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-43 Score=322.79 Aligned_cols=287 Identities=24% Similarity=0.414 Sum_probs=244.7
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec------------------CcccCEEEEEEcCCCCE
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------------------GHKDSVSSLAFSMDGQL 121 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~------------------~h~~~V~~v~~s~~g~~ 121 (394)
..+|++.|++|+|+|+ +.+||+|+ |++|+||++.+++.+..+. +|...|++++|+|+|++
T Consensus 58 ~~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 58 SLDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred eCCCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 3479999999999995 57899986 8999999999888766553 46677999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC
Q 016187 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 122 l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~ 201 (394)
|++|+.|+.|++|+...++....+.+|...|.+++|++++..+++++.++.+++|+..+.........+...+....+.+
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999998877776665555544444445
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-------- 269 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------- 269 (394)
++++|++|+.|+.|++||..++.....+... ..|...|+++.++|++.++++|+.|+.|++||+.+++
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 8899999999999999999998877665422 2366789999999999999999999999999997653
Q ss_pred ----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEE------eCCCCEEEEEe
Q 016187 270 ----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMW------LGTSKYVVTGC 338 (394)
Q Consensus 270 ----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~------~~~~~~l~sg~ 338 (394)
.......|...|.+++|+|++++|++|+.||+|++||+.+..+.. ..+|...|.++++ +|++++|++|+
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 234456688999999999999999999999999999998765543 4578999999875 56889999999
Q ss_pred CCCeEEEEEC
Q 016187 339 VDGKVRVWDS 348 (394)
Q Consensus 339 ~dg~i~iwd~ 348 (394)
.||+|+||++
T Consensus 376 ~Dg~I~iW~~ 385 (388)
T d1erja_ 376 GDCKARIWKY 385 (388)
T ss_dssp TTSEEEEEEE
T ss_pred CCCEEEEEee
Confidence 9999999986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-42 Score=310.32 Aligned_cols=321 Identities=25% Similarity=0.484 Sum_probs=266.2
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
.+...++.||++.|.+ +++++ +++|||||.|++|+|||+.+++++.++.+|...|.+++|+|+ +|++|+.|+++++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCcCEEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence 4567889999999865 35553 568999999999999999999999999999999999999975 9999999999999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+................+...... ...++.+..|+.+.+|+..+++....+..+..... .+.+....+++++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDF 157 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTS
T ss_pred cccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccce--eeccccceeeeecCCC
Confidence 9998887776666666666655444 45678889999999999998877666655544433 3445667899999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
.|++||+...+.+..+.++ ...+ ..+++++.++++|+.||.|++||++.++++..+..|...+.++.+++ .+|
T Consensus 158 ~i~~~d~~~~~~~~~~~~~---~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l 230 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGH---TNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NIL 230 (342)
T ss_dssp CEEEEEGGGTEEEEEECCC---SSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEE
T ss_pred eEEEeecccceeeEEEcCc---cccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEE
Confidence 9999999988887777654 2333 44556789999999999999999999999999999999999988875 599
Q ss_pred EEEeCCCcEEEEeCCCCCccee----ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-----cccCce
Q 016187 294 ATGSMDQKLIIWDLQHSLPRST----CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-----GHRDAI 364 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~h~~~v 364 (394)
++++.|++|++||+........ ..|...+.++.++ ++++++|+.||.|++||++++++++.+. +|.+.|
T Consensus 231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v 308 (342)
T d2ovrb2 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 308 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred EEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence 9999999999999977644332 2355667776664 5799999999999999999999998874 678889
Q ss_pred eEEEEccCCCEEEEEeCCCc----EEEEecc
Q 016187 365 QAISVSAHQDFLVSVSLDGT----ARVFEIA 391 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~s~dg~----i~iw~~~ 391 (394)
++++|+|++.+|++|+.||+ |++||++
T Consensus 309 ~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 309 WRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 99999999999999999996 9999986
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-41 Score=304.69 Aligned_cols=289 Identities=20% Similarity=0.394 Sum_probs=253.3
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
....++|.||+++|++|+|+|+ +.+||||+.|++|+|||+.+++.+..+.+|..+|.+++|+|++.++++|+.|+.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 4567889999999999999995 678999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCc----eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 134 WDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 134 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
|+..... ....+.++.......... .+..+.....+.....+.............+...+....+.+.+.++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 9976543 345566666655544444 45667788889999999988777777777788889999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEEEC
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIGFS 287 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~~~ 287 (394)
+.|+.|++||+++++.+..+.+ |...|++++++|++.++++|+.|+.|++|++...+.+..+ ..+...|.+++|+
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~---h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTG---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred ecCceEEEEECCCCcEEEEEeC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 9999999999999998888775 5678999999999999999999999999999998877665 4567789999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
|++.+|++|+.||.|++||+.+..... ..+|...|++++|+|++++|++|+.||.|+|||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999998765444 446899999999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.5e-42 Score=306.06 Aligned_cols=285 Identities=18% Similarity=0.295 Sum_probs=233.5
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
|+..+.++||.++|++++|+|+|++|+||+.|++|++||+.+++....+. .|...|++++|+|++.+ ++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence 56778999999999999999999999999999999999999998887764 67889999999999875 56677999999
Q ss_pred EeCCccce---eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 176 WNADRAAY---LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 176 w~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
|+...... ......+...+.+++|+|+++.+++++ ++.+++|+... ..... ....+++++++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~-----~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP-----ISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE-----CSSCEEEEEECTTSCEEE
T ss_pred eccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc-----cccccccccccccccccc
Confidence 99765432 223345778889999999998777665 57899998542 22222 233578999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----ceeccCCCCEEEEEE
Q 016187 253 SGSKDGSVHMVNITTGKVVS-SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP----RSTCDHEDGVTCLMW 327 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~v~~~~~ 327 (394)
+|+.|+.|++||+++++... ....|..+|.+++|+|++.+|++++.|+.|++||+..... .....|...|++++|
T Consensus 153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998877543 3456899999999999999999999999999999865432 223457889999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEE--Eeecc-cCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFSGH-RDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|++++|++|+.||.|++||+.++.... ....| ...|..+.+ +++++|+|+|.||+|++||+.
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 9999999999999999999998775433 33344 455666654 567899999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-43 Score=324.77 Aligned_cols=324 Identities=15% Similarity=0.199 Sum_probs=240.7
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
+.++|+|++|+|+ +.+||+|+.|+.|++|+..+++ .+..+++|.++|++|+|+|++++|++|+.|++|+|||+.++.
T Consensus 6 ~~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 3578999999995 6789999999999999998775 556789999999999999999999999999999999998776
Q ss_pred eEE--EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 141 LKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 141 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
... .+.++...|.+++|+|+++.+++++.|+.+++|++.... ......+|...|.+++|+|++++|++|+.|++
T Consensus 85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 544 345678899999999999999999999999999876543 23445678999999999999999999999999
Q ss_pred EEEEcCCCCceE---------------EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC
Q 016187 215 LRVWNPKSGENI---------------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 215 i~vwd~~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
|++|+....... ..+.....|...+.+++|+|+++++++++.|+.|++||+.+++.+..+..|..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence 999997653210 01111123567799999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCC---CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHED---GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
+|.+++|+|++.+|++|+ |+.+++|........... .+.. .......+....+ ...+........ ......
T Consensus 245 ~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~ 319 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF---QNLDKKASSEGS-AAAGAG 319 (371)
T ss_dssp CEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH---HHCCCCC----------CC
T ss_pred cceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeE---ecccceeEEecc-ccccce
Confidence 999999999998888765 777777654332211111 1000 0000000000000 000111111110 000111
Q ss_pred EeecccCceeEEEEccCC----CEEEEEeCCCcEEEEeccC
Q 016187 356 TFSGHRDAIQAISVSAHQ----DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iw~~~~ 392 (394)
....|.+.|+++++.+.+ ..|+|+|.||.|++|++++
T Consensus 320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 124699999999998754 3689999999999999864
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.2e-41 Score=296.56 Aligned_cols=284 Identities=15% Similarity=0.294 Sum_probs=228.9
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
-.+++.||++.|++|+|+|+ +.+||||+.|++|++||+++++....+ .+|...|++++|+|+|++ ++++.|+.+++|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~ 81 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV 81 (299)
T ss_dssp EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred cceEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence 35788999999999999995 678999999999999999999988877 479999999999999975 466789999999
Q ss_pred eCCCCce---EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 135 DPSSGNL---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 135 d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
+...... ......+...+..++|+|++.++++++ ++.+++|+..... ... ....+.+++|+|++++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--~~~--~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--EVP--ISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE--EEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred ccCCccccccccccccccccccccccccccccccccc-ccccccccccccc--ccc--cccccccccccccccccccccc
Confidence 9765432 122344667889999999998776654 5789999865432 222 3345788999999999999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EeccCCCCEEEEEECC
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS---SLVSHTDSIECIGFSR 288 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~h~~~i~~v~~~~ 288 (394)
||.|++||+++++...... ..|...|++++++|++.++++++.|+.|++||+.++..+. .+..|..+|.+++|+|
T Consensus 157 dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TSEEEEEEEETTEEEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998776443221 1256789999999999999999999999999998876553 4567899999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcce---eccC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPRS---TCDH-EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
++.+|++|+.|+.|++||+....... ...| ...+.++.| +++++|++|+.||.|++||+.
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999997653322 1233 345666655 567899999999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-38 Score=284.39 Aligned_cols=286 Identities=20% Similarity=0.278 Sum_probs=229.9
Q ss_pred cEEEEEEcCCCCcEEEEecCC-CeEEEEEcCCC--eeeEeecCcc-cCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC
Q 016187 66 EVYSVACSPTDATLVATGGGD-DKGFFWRINQG--DWASEIQGHK-DSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d-~~v~~w~~~~~--~~~~~~~~h~-~~V~~v~~s~--~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+++++|+|.+. .||.++.+ ..++.|+.... .....+.+|. ..|++++|+| +|++|++|+.||+|+|||+..+
T Consensus 19 ~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 19 FTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp CCCCCEEETTTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 356889999754 56655444 34566775433 3456777874 6899999998 5789999999999999998654
Q ss_pred ce--------EEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe-EEE
Q 016187 140 NL--------KCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICT 208 (394)
Q Consensus 140 ~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s 208 (394)
+. ...+..+.++|.+++|+++++++++++. ++.+.+|+.++++.+..+.+|...|++++|+|++.+ +++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 32 1234567889999999999998877654 678999999999999999999999999999998875 678
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
++.|+.+++||....+....+..+..+...|++++|+|+ +.++++++.|+.|++||+++++.+..+..|..++..+
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~--- 254 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG--- 254 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC---
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccc---
Confidence 999999999999888877777776677888999999996 6889999999999999999999988888776655322
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc--ee
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA--IQ 365 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~ 365 (394)
+.++.| +++++|++++.|+.|+|||+.++++++.+..|... +.
T Consensus 255 ----------------------------------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (325)
T d1pgua1 255 ----------------------------------IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 299 (325)
T ss_dssp ----------------------------------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred ----------------------------------eeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCe
Confidence 223333 57889999999999999999999999988876654 34
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEec
Q 016187 366 AISVSAH-QDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 366 ~l~~~~~-~~~l~s~s~dg~i~iw~~ 390 (394)
.+++.+. ..+|+|+|.||+|++||+
T Consensus 300 ~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 300 QVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCEEEEEECCCEEEEEEC
Confidence 5555443 358999999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-38 Score=276.02 Aligned_cols=280 Identities=15% Similarity=0.211 Sum_probs=225.0
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
++.+++.||.++|++|+|+| |+||+.|++|++|++.++ ..+|...|.+++|++++ .+++++.|++|++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 46788999999999999987 789999999999998653 46899999999998764 67899999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC-
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA- 213 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg- 213 (394)
+....+ ....+..+++++++..++++ .++.+.+|+..++..+..+..+. .+ .+++++++.+++++.++
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTS
T ss_pred cccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccccc
Confidence 864321 23456778888888766665 45678899988888777665443 33 45677788888887765
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccCCCCEEEEEECCCCCe
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~ 292 (394)
.+++|++...+....+. ..+...+++++|+|++.++++|+.||.|++||+.+++.... +..|..+|.+++|+|.+..
T Consensus 142 ~v~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLK--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEETTEEEEEEECS--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred eeeeeeccccceeeeee--eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccc
Confidence 79999987655444333 23566799999999999999999999999999999886654 5789999999999987653
Q ss_pred EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEcc
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~ 371 (394)
.. .+.+++.++++|+.|++|++||+.+ ++++..+.+|.+.|++++|+|
T Consensus 220 ~~-------------------------------~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~ 268 (287)
T d1pgua2 220 AN-------------------------------EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268 (287)
T ss_dssp -----------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred cc-------------------------------cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC
Confidence 22 2345678999999999999999876 567778889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEec
Q 016187 372 HQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 372 ~~~~l~s~s~dg~i~iw~~ 390 (394)
++ .|+|+|.||+|++|++
T Consensus 269 ~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 269 PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TT-EEEEEETTSCEEEEEE
T ss_pred CC-EEEEEECCCeEEEEEE
Confidence 85 6899999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-37 Score=278.86 Aligned_cols=284 Identities=25% Similarity=0.389 Sum_probs=227.2
Q ss_pred eEeecCcccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 100 ASEIQGHKDSV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 100 ~~~~~~h~~~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
..+|+||.+.| +|++ ++|++||||+.|++|+|||+.+++.+.++.+|.++|.+++|+|+ .+|++|+.|+.|++|+.
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45799999886 5555 46889999999999999999999999999999999999999985 58999999999999999
Q ss_pred CccceeeeecccC--cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--------------------CCcc
Q 016187 179 DRAAYLNMFSGHG--SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--------------------PYHT 236 (394)
Q Consensus 179 ~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------------------~~~~ 236 (394)
...........+. .......+.++++++++++.|+.|++||+.+.......... ..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 8877665544333 34455677889999999999999999999876543222110 0011
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-e
Q 016187 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-T 315 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~ 315 (394)
..+ ....+++.+++++..|+.|++||+.+++.+.....+...+.++.++|++.++++++.|++|++||+.+..... .
T Consensus 162 ~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 162 ASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp SCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence 122 3455678899999999999999999999999999999999999999999999999999999999998765443 4
Q ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEE-EEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI-SVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l-~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..|...|.++.++ +++|++|+.||.|++||+.++... +..|...+..+ .+++++++|++|+ ||+|++||+++.
T Consensus 240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg 313 (355)
T d1nexb2 240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313 (355)
T ss_dssp CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred ccccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence 5688889999886 469999999999999999887654 55666666665 5567777776665 899999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-37 Score=283.13 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=206.7
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
.++|++++|+|++++|++|+.|+.|++|+..+++ .+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4679999999999999999999999999987654 56778899999999999999999999999999999999877654
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
..+.. ..+...++++.|+|+++.+++|+.|++|++|++.... .......|...|.+++|+|++.+|++++.|+++
T Consensus 87 ~~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 87 PTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccc-ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 44332 2356789999999999999999999999999886653 233456788999999999999999999999999
Q ss_pred EEEeCCCCCc-------------------ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 303 IIWDLQHSLP-------------------RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 303 ~iwd~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
++|++..... .....|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|..+
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence 9999753211 112356778999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|.+++|+|++++|++|+ |+.+++|...
T Consensus 246 v~s~~fs~d~~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp EEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred ceeeeecCCCCEEEEEc-CCceEEEEee
Confidence 99999999998887655 7777777654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-36 Score=260.81 Aligned_cols=276 Identities=26% Similarity=0.437 Sum_probs=225.7
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
+....+|...|+|++ ++|++||||+.|++|+|||+.+++.+.++.+|.+.|.+++| ++++|++|+.|+.+++|++.
T Consensus 8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 344567888999865 57999999999999999999999999999999999998887 56799999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
.+........+..... .+.+....++++..++.+++|+...............+...+.++.+. ...+++++.|+.
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~ 159 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT 159 (293)
T ss_dssp SCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred cccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCc
Confidence 8877666554444333 455667789999999999999998766543333333455667666654 467889999999
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEe
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
|++||+++++.+..+.++...+..+.++ +.++++++.|++|++||++....... ..+...+.+ +.+++.+|++|+
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~ 235 (293)
T d1p22a2 160 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA 235 (293)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE
T ss_pred eeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc
Confidence 9999999999999999999999888776 45899999999999999987655443 345555554 567889999999
Q ss_pred CCCeEEEEECC---------CCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 339 VDGKVRVWDSL---------SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 339 ~dg~i~iwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.||.|++||+. ...+++.+.+|.+.|++|+|+ +++|+|||.||+|++||
T Consensus 236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 99999999863 245778899999999999984 57899999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-35 Score=264.01 Aligned_cols=286 Identities=28% Similarity=0.540 Sum_probs=234.8
Q ss_pred EEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC
Q 016187 92 WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 92 w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
|+....+....|+||.+.|.+ +++++|++|||||.|++|+|||+.+++.+.++.+|.+.|.+++|+|+ +|++|+.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence 555666777889999999865 46778999999999999999999999999999999999999999874 899999999
Q ss_pred eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
.+++|+............+...+..... ....++.+..|+.+.+|+..+++....+.... .......+....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 150 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-----AAVRCVQYDGRRV 150 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCS-----SCEEEEEECSSCE
T ss_pred cccccccccccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeeccc-----ccceeecccccee
Confidence 9999999887766666666666655444 34678899999999999999988766654321 1223345567788
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCC
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGT 330 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~ 330 (394)
++++.|+.|++||+...+.+..+..|...+..+.+ ++.++++++.||+|++||++..... ....|...+.++.+++
T Consensus 151 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~- 227 (342)
T d2ovrb2 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD- 227 (342)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-
T ss_pred eeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-
Confidence 99999999999999999999999999887776655 5779999999999999999876544 3456778888887765
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeec---ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSG---HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
++|++|+.||.|++||....+....+.+ |...+.++.+ +++++++|+.||+|++|++.+.
T Consensus 228 -~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 228 -NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 290 (342)
T ss_dssp -TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTC
T ss_pred -CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCC
Confidence 6999999999999999999998888775 4455555555 5589999999999999998754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-35 Score=273.04 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=214.8
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce------EEEEecCCCCEEEEEEc---C----CCCEEEEe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL------KCTLEGPGGGVEWVSWH---P----RGHIVLAG 167 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~---~----~~~~l~~~ 167 (394)
...++|.+.|.++++++ ++|+|+|.|++|+|||..+.+. ......+...+..+... + +..+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45689999999999875 6999999999999999765532 22223344443332221 1 23467899
Q ss_pred cCCCeEEEEeCCccceeee----------ecccCcCeEEEEECCC-----CCeEEEEeCCCcEEEEcCCCCc--------
Q 016187 168 SEDSTVWMWNADRAAYLNM----------FSGHGSSVTCGDFTPD-----GKTICTGSDDATLRVWNPKSGE-------- 224 (394)
Q Consensus 168 s~d~~i~iw~~~~~~~~~~----------~~~h~~~v~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~-------- 224 (394)
+.|+.+++|+......... ...+...+..++|.++ +.++++++.||++++|++....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999998754322111 1224455667777764 4688999999999999974321
Q ss_pred -------eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe------ccCCCCEEEEEECCCCC
Q 016187 225 -------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL------VSHTDSIECIGFSRSSP 291 (394)
Q Consensus 225 -------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~h~~~i~~v~~~~~~~ 291 (394)
..........+...+++++++|++ ++++|+.|++|++||+.+++.+..+ .+|..+|.+++|+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 111222233345568899999987 8899999999999999999877654 46899999999999999
Q ss_pred eEEEEeCCCc---EEEEeCCCCCcce--------------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 292 WAATGSMDQK---LIIWDLQHSLPRS--------------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 292 ~l~s~s~dg~---i~iwd~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
+|++|+.|++ |++||+.+..... ..+|...|++++|+|++++|++|+.|++|++||+.+++++
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 9999999875 8999997653322 2369999999999999999999999999999999999999
Q ss_pred EEeecccCce---------------------eEEEEccCC----------CEEEEEeCCCcEEEEec
Q 016187 355 RTFSGHRDAI---------------------QAISVSAHQ----------DFLVSVSLDGTARVFEI 390 (394)
Q Consensus 355 ~~~~~h~~~v---------------------~~l~~~~~~----------~~l~s~s~dg~i~iw~~ 390 (394)
.++++|.+.| +++.|.+.+ +.|++++.|+.||+|.-
T Consensus 325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence 9999997554 445544322 35888999999999874
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-34 Score=252.02 Aligned_cols=274 Identities=26% Similarity=0.496 Sum_probs=225.2
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....+.+|...|+|++| ++++||||+.|++|+|||+.+++++.++.+|.++|++++| ++++|++|+.|+.|++|+
T Consensus 7 ~i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CEECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence 45566789999999875 3568999999999999999999999999999999999887 578999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
+..+............. ..+.+....++++..++.+.+|+..... ....+..|...+.+..+. ...+++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d 157 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 157 (293)
T ss_dssp SSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred ccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCC
Confidence 99988776665544433 3455666789999999999999987654 334556788888877765 4578899999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 292 (394)
+.|++||+++++.+..+.++ ...+..+.++ +.++++++.|++|++||+++.+.+.....|...+.+ +++++.+
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~ 230 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGH---KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR 230 (293)
T ss_dssp SEEEEEETTTCCEEEEEECC---SSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred CceeeecCCCCcEEEEEccc---ccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence 99999999999988877654 3456666554 678999999999999999999999999999888876 4566789
Q ss_pred EEEEeCCCcEEEEeCCCC----------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 293 AATGSMDQKLIIWDLQHS----------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
|++++.||.|++||+... .......|...|++++| ++.+|++|+.||+|++||
T Consensus 231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 999999999999997421 11233568889999998 457899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.6e-35 Score=259.92 Aligned_cols=291 Identities=11% Similarity=0.115 Sum_probs=223.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE---EEecCCCCEEEEEEcCCC-CEEEEecCCCeE
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC---TLEGPGGGVEWVSWHPRG-HIVLAGSEDSTV 173 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i 173 (394)
+.+..+++|.+.|++|+|+|++++||+|+.|++|+|||+.++.... ...+|.++|.+++|+|++ .+|++|+.|+.+
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 5677889999999999999999999999999999999987665432 233688999999999875 588999999999
Q ss_pred EEEeCCccceeeeecccCc-CeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE----cCCCCcccCeEEEEEcCCC
Q 016187 174 WMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~ 248 (394)
++|+............+.. ......+.++...+++++.++++++||++.+...... ..+ ..........+.+.+
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-NTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-SSSSCCCEEEEEECS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc-cccceeeeeeeeccC
Confidence 9999987766655554443 3344556678889999999999999998654322111 111 122234456677888
Q ss_pred CEEEEEeCCCcEEEEECCCCcEE---EEeccCCCCEEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCcc-----------
Q 016187 249 TLALSGSKDGSVHMVNITTGKVV---SSLVSHTDSIECIGFS-RSSPWAATGSMDQKLIIWDLQHSLPR----------- 313 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~---~~~~~h~~~i~~v~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~----------- 313 (394)
..+++++.|+.|++|++...+.. .....+...+.+..+. .++..+++++.||.+.+|++......
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 99999999999999999766432 2233344455555554 56778999999999999987543111
Q ss_pred -----eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 314 -----STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 314 -----~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
....|...+++++|+|++++|++|+.||.|++||+.+++++..+..+. .+..++|+|+++++++++.|+++++|
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence 112456679999999999999999999999999999999999886543 34567888999999999999887777
Q ss_pred ec
Q 016187 389 EI 390 (394)
Q Consensus 389 ~~ 390 (394)
..
T Consensus 320 ~~ 321 (342)
T d1yfqa_ 320 AA 321 (342)
T ss_dssp SS
T ss_pred ee
Confidence 53
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-34 Score=257.62 Aligned_cols=252 Identities=21% Similarity=0.289 Sum_probs=204.8
Q ss_pred Cceeeeecc-CCcEEEEEEcCC-CCcEEEEecCCCeEEEEEcCCCee--------eEeecCcccCEEEEEEcCCCCEEEE
Q 016187 55 DSTHIFSGH-SDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--------ASEIQGHKDSVSSLAFSMDGQLLAS 124 (394)
Q Consensus 55 ~~~~~~~~h-~~~v~~~~~~p~-~~~~lasg~~d~~v~~w~~~~~~~--------~~~~~~h~~~V~~v~~s~~g~~l~t 124 (394)
.....+.+| ...|++++|+|. ++.+||||+.|++|++|++..++. ...+..|..+|.+++|+++|++|++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence 345667787 468999999994 567999999999999999865432 2345678899999999999999987
Q ss_pred EeC--CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeee---ecccCcCeEEEE
Q 016187 125 GGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM---FSGHGSSVTCGD 198 (394)
Q Consensus 125 ~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~---~~~h~~~v~~~~ 198 (394)
++. ++.+++|+..+++.+..+.+|...|.+++|+|++. ++++++.|+.+++|+....+.... ..+|...|.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 764 67899999999999999999999999999999987 477899999999999887665443 346778899999
Q ss_pred ECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 199 FTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 199 ~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
|+|+ +++|++++.|+.|++||+++++.+..+.++.... ..+.++.+ |++++|++++.|++|++||+++++++..+..
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eccccceeccccccccceeeeeeccccccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence 9996 6889999999999999999999888887654322 22333333 6889999999999999999999999988776
Q ss_pred CCCC--EEEEEECCC-CCeEEEEeCCCcEEEEeC
Q 016187 277 HTDS--IECIGFSRS-SPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 277 h~~~--i~~v~~~~~-~~~l~s~s~dg~i~iwd~ 307 (394)
|... +..+++.+. ..+|++++.||+|++||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 6544 334444433 347899999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=6.7e-36 Score=270.61 Aligned_cols=312 Identities=12% Similarity=0.049 Sum_probs=241.7
Q ss_pred EEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEEec
Q 016187 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 70 ~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~ 147 (394)
-.|||.+++++|+++ ++.+++|++..++.+.. +|...|++++|||||++|++++.+. .|++||..+++.. .+..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE 83 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC
Confidence 458997678888876 57999999988876653 6999999999999999998877654 7999999887765 5677
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe----------CCCcEEE
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS----------DDATLRV 217 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~v 217 (394)
+...+..++|+|++++|++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.++ .++.+++
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v 163 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence 889999999999999999999999999999999998888888999999999999999998643 4557999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-------EEEeccCCCCEEEEEECCCC
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-------VSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~h~~~i~~v~~~~~~ 290 (394)
||+.+++...... +...+..+.++|+|+.|++++.++.+++|+...... ...+..|...+..+.+++++
T Consensus 164 ~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 164 YDMEGRKIFAATT----ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EETTTTEEEECSC----SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred eccccCceeeecc----cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 9998876544322 344578899999999999999999999999765432 23333455555556677777
Q ss_pred CeEEEEeCCCc-----EEEEeCCCCCcceeccCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeecccC
Q 016187 291 PWAATGSMDQK-----LIIWDLQHSLPRSTCDHEDGVTCLMWLGTS---KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD 362 (394)
Q Consensus 291 ~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 362 (394)
..++++..+.. +..++...........+...+..+.+.+.+ .++++++.++.|++||+.+++.. .|.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~ 315 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKN 315 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEE
T ss_pred CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecC
Confidence 76665544322 333333333333334445555555554443 46788889999999999887643 3445
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 363 AIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 363 ~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.|.+++|+|||++|++++.||.|++|+++..
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred CcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 6899999999999999999999999998753
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-35 Score=264.45 Aligned_cols=307 Identities=10% Similarity=0.033 Sum_probs=227.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee---EeecCcccCEEEEEEcCCC-CEEEEEeCCCcE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA---SEIQGHKDSVSSLAFSMDG-QLLASGGLDGLV 131 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~---~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i 131 (394)
.+++..+|++.|++|+|+|+ +.+||||+.|++|+|||+..+... ....+|..+|.+++|+|++ .+|++|+.|+.|
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred eEEcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 35677899999999999995 678999999999999998765432 2334699999999999865 589999999999
Q ss_pred EEEeCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee----eeccc--CcCeEEEEECCCCC
Q 016187 132 QIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN----MFSGH--GSSVTCGDFTPDGK 204 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~----~~~~h--~~~v~~~~~~~~~~ 204 (394)
++|+...+........+.. ......+.++...+++++.++.+++||++...... ....+ ........+.+.+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 9999988877666554443 33455567778899999999999999986543222 22222 22334556778889
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCc---------EEEE-
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGK---------VVSS- 273 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~---------~~~~- 273 (394)
.+++++.|+.|++||+...+................+..+. .++..+++++.||.+.+|+..... ....
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 99999999999999998765432222112233345555554 467889999999999999875432 1111
Q ss_pred -----eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 274 -----LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 274 -----~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
...|...+++++|+|++.+||+|+.||+|++||+.+........+......++|+|++++|++|+.|+.+++|..
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 134667899999999999999999999999999988765555544456677888999999999999999998864
Q ss_pred CCCeEEEEeecccCceeEE
Q 016187 349 LSGDCVRTFSGHRDAIQAI 367 (394)
Q Consensus 349 ~~~~~~~~~~~h~~~v~~l 367 (394)
... .+..|...|..+
T Consensus 322 ~~~----~~~~~~~~i~~~ 336 (342)
T d1yfqa_ 322 IDQ----TIELNASSIYII 336 (342)
T ss_dssp SCT----TSCCCCCEEEEE
T ss_pred eCC----CccCCCCeEEEE
Confidence 322 344555555533
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-33 Score=257.06 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=200.4
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee------eEeecCcccCEEEEEE------cC-CCCEEEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASEIQGHKDSVSSLAF------SM-DGQLLAS 124 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~------~~~~~~h~~~V~~v~~------s~-~g~~l~t 124 (394)
....+|.++|++|++++ .+++|||.|++|++|+..+.+. ......|...+..+.. ++ ++.++++
T Consensus 8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 45679999999999875 3789999999999999765432 2223345444333222 22 2357889
Q ss_pred EeCCCcEEEEeCCCCceE-----EEEe-----cCCCCEEEEEEcCC-----CCEEEEecCCCeEEEEeCCccc-------
Q 016187 125 GGLDGLVQIWDPSSGNLK-----CTLE-----GPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADRAA------- 182 (394)
Q Consensus 125 ~s~d~~i~vwd~~~~~~~-----~~~~-----~~~~~v~~~~~~~~-----~~~l~~~s~d~~i~iw~~~~~~------- 182 (394)
++.|+.|++|++...... .... .+...+..++|.++ +.++++++.|+.+++|++....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 999999999986544321 1111 23345777888775 3578999999999999974211
Q ss_pred -----------eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC---CCcccCeEEEEEcCCC
Q 016187 183 -----------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH---PYHTEGLTCLTISADS 248 (394)
Q Consensus 183 -----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 248 (394)
.......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+... ..|..+|++++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 111223455668899999997 8999999999999999999887766532 2467889999999999
Q ss_pred CEEEEEeCCCc---EEEEECCCCcEEEEec-------------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 016187 249 TLALSGSKDGS---VHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP 312 (394)
Q Consensus 249 ~~l~~g~~dg~---i~i~d~~~~~~~~~~~-------------~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 312 (394)
++|++|+.|++ |++||+.+++.+..+. +|...|++++|+|++++|+|++.|++|++||+++...
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 99999999875 8999999998887764 6999999999999999999999999999999987644
Q ss_pred cee-ccCCCCEE----EEEEeCCCCEEE
Q 016187 313 RST-CDHEDGVT----CLMWLGTSKYVV 335 (394)
Q Consensus 313 ~~~-~~~~~~v~----~~~~~~~~~~l~ 335 (394)
... .+|...|. .++|.+++..++
T Consensus 324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 324 ITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred EEEECCcCCcccCCccEEEECCCCCEEE
Confidence 332 34543332 234444444443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.9e-30 Score=241.04 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=220.8
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--Ee---cCCCCE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--LE---GPGGGV 152 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~--~~---~~~~~v 152 (394)
.++++.+.|++|+|||+.+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++.... +. +|...+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 356888999999999999999999999874 699999999999999999999999999999875433 22 333445
Q ss_pred EEEEEcCCCCEEE-EecCCCeEEEEeCCccceeeeecccCcCeE-----------EEEECCCCCeEEEEeC-CCcEEEEc
Q 016187 153 EWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVT-----------CGDFTPDGKTICTGSD-DATLRVWN 219 (394)
Q Consensus 153 ~~~~~~~~~~~l~-~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-----------~~~~~~~~~~l~s~~~-dg~i~vwd 219 (394)
.+++|+|+|++++ ++..++.+++||..+...+..+.+|...+. .+.+++++..++.... .+.+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 5667788999765 455789999999999887777666554433 3444555544443322 34444444
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccCC--CCEEEEEECCCC--C-eE
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVSHT--DSIECIGFSRSS--P-WA 293 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~--~~i~~v~~~~~~--~-~l 293 (394)
......+.... ..+...+..+.++|++++++++. .+..+.+++..+++.+....... .+...+.+...+ . +.
T Consensus 192 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 192 YKDIDNLTVTS--IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp CSSSSSCEEEE--EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred eccccceeeEE--eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence 44333221110 01345678899999999877765 55678999999998876654321 122222332222 2 22
Q ss_pred EEEeCCCcEEEEeCCCC--------CcceeccCCCCEEEEEEeCCCCEEEE-------EeCCCeEEEEECCCCeEEEEe-
Q 016187 294 ATGSMDQKLIIWDLQHS--------LPRSTCDHEDGVTCLMWLGTSKYVVT-------GCVDGKVRVWDSLSGDCVRTF- 357 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s-------g~~dg~i~iwd~~~~~~~~~~- 357 (394)
++.+.|+.+.+|+.... ......+|...+..++|+|++++|++ ++.+++|+|||+.++++..++
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~ 349 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 349 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence 33456788888876542 12234468888999999999999994 556889999999998876554
Q ss_pred --------ecccCceeEEEEccCCCEEE-EE----eCCCcEEEEeccCCC
Q 016187 358 --------SGHRDAIQAISVSAHQDFLV-SV----SLDGTARVFEIADFK 394 (394)
Q Consensus 358 --------~~h~~~v~~l~~~~~~~~l~-s~----s~dg~i~iw~~~~~~ 394 (394)
..|...|.+++|+|||++++ |+ +.+|.|+|||.+++|
T Consensus 350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 24566799999999999764 43 368899999988764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.8e-30 Score=234.57 Aligned_cols=294 Identities=12% Similarity=0.062 Sum_probs=223.7
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCC--CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d--~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~ 138 (394)
.+|...|++++|+|++ .+|++++.+ ..+++|+..+++.. .+..|...|.+++|+|+|++|++++.++.+++|++.+
T Consensus 39 ~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 116 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 116 (360)
T ss_dssp CSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc
Confidence 3799999999999965 455554443 37899999887754 5778999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEe----------cCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAG----------SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
++....+..+...+.+++|+|++++|+.+ ..++.+++|+..+++.... ..+...+..++|+|+|++|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 195 (360)
T d1k32a3 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYY 195 (360)
T ss_dssp CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEE
T ss_pred cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEE
Confidence 99988888888899999999999998854 3456799999988765443 456677888999999999999
Q ss_pred EeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEecc
Q 016187 209 GSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~ 276 (394)
++.++.+++||...... ...+.. +......+.+++++..++++..+. .+..++...++. ..+..
T Consensus 196 ~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 271 (360)
T d1k32a3 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPL---IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIP 271 (360)
T ss_dssp EESCCCCCEECSSSSCEECCSCBEEEEEES---STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEE
T ss_pred EeCCCceEcccccccceeeccccceEEEec---ccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeee
Confidence 99999999999765432 122221 222333445667766665544332 244444444442 33444
Q ss_pred CCCCEEEEEECCCC---CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 277 HTDSIECIGFSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 277 h~~~i~~v~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
+.+.+..+.+.+.+ .++++++.++.+++||+.+.... .|...|..++|+||+++|++++.||.|++||+.+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence 55666666665554 36788899999999999876443 3445689999999999999999999999999999998
Q ss_pred EEEeecccCce
Q 016187 354 VRTFSGHRDAI 364 (394)
Q Consensus 354 ~~~~~~h~~~v 364 (394)
..++..+..++
T Consensus 349 ~~~~~~d~~~~ 359 (360)
T d1k32a3 349 ERTVETDKRPL 359 (360)
T ss_dssp CEECCCCSSCE
T ss_pred ceEEEeccccc
Confidence 88887666654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=2.5e-30 Score=240.36 Aligned_cols=308 Identities=8% Similarity=-0.050 Sum_probs=214.2
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEEe---cCCCCE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLE---GPGGGV 152 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~~---~~~~~v 152 (394)
.++++.+.|++|.|||..+++.+..+..| ..+..++|||||++|++++.|++|++||+.+++.. ..++ .|.+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 34589999999999999999999999877 46999999999999999999999999999887643 3333 233444
Q ss_pred EEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeeccc-----------CcCeEEEEECCCCCeE-EEEeCCCcEEEEc
Q 016187 153 EWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGH-----------GSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219 (394)
Q Consensus 153 ~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd 219 (394)
....|+|+|++| ++++.++.+++||..+++.+..+..| ......+.++|+|..+ ++...++.|.+||
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 555678899975 67888999999999998877665543 3445678899998875 5667789999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEecc-----CCCCEEEEEECCCCCeE
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVS-----HTDSIECIGFSRSSPWA 293 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~-----h~~~i~~v~~~~~~~~l 293 (394)
..+.+........ +...+..+.++|+++++++++. +..+.++|..+++.+..+.. |........+...+...
T Consensus 192 ~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 269 (432)
T d1qksa2 192 YTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269 (432)
T ss_dssp TTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred ccCCCcceEEEEc--ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence 9887755433211 2345788999999998776654 56888999988776655421 22333333344444444
Q ss_pred EEEe-CCCcEEEEeCCCCCcceeccCCCCEEEEEE-----------------------------------eCCCCEEEEE
Q 016187 294 ATGS-MDQKLIIWDLQHSLPRSTCDHEDGVTCLMW-----------------------------------LGTSKYVVTG 337 (394)
Q Consensus 294 ~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----------------------------------~~~~~~l~sg 337 (394)
++.. .++.+.+|+...... ..|...+....+ .|+++.|+++
T Consensus 270 ~~~~lg~~~v~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~ 346 (432)
T d1qksa2 270 ATSHMGDDSVALIGTDPEGH---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 346 (432)
T ss_dssp EEEBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred cccccCCceEEecccccccc---cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhccc
Confidence 3332 255666665432210 011111111122 2667777777
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEe-----CCCcEEEEeccCCC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVS-----LDGTARVFEIADFK 394 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iw~~~~~~ 394 (394)
+.|+.+++|++.++. .+..|...|.+++|+|||++++... .+|.|+|||-.+.|
T Consensus 347 s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 347 GSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp SSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred ccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 777777777764442 2345777899999999999875443 47889999977653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=1.7e-26 Score=202.95 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=220.9
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEEecCCCCEEEEE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 156 (394)
.+.++++.|++|.+||+++++.+.+++.. ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~ 80 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence 34567889999999999999999888754 4578999999999874 66788999999999999988887665 468899
Q ss_pred EcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCC
Q 016187 157 WHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 157 ~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~ 234 (394)
|++++..+ +++..+..+.+|+..+++....+..+ ..+.++.|+|+++.++ ++..++.+.+|+..+++....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--- 156 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc---
Confidence 99999855 55667889999999988877776554 4567889999998775 566688899999999888777653
Q ss_pred cccCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe---CCCcEEEEeCCCC
Q 016187 235 HTEGLTCLTISADSTLALSGSKD-GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS---MDQKLIIWDLQHS 310 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s---~dg~i~iwd~~~~ 310 (394)
...+..+.++|++..+++++.+ +.+.+|+....+....+.. ...+..+++++++..++.++ .+++|.+||+.+.
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 157 -GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp -CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred -CCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 3457889999999988877765 5677788777766665543 45677889999999876654 3468999999887
Q ss_pred CcceeccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeEEEEeec
Q 016187 311 LPRSTCDHEDGVTCLMWLGTSKYV-VTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.......+...+.+++|+|++++| ++++.+++|++||+.++++++++.-
T Consensus 235 ~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 665555566778999999999987 5777899999999999999988863
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=1.4e-27 Score=221.65 Aligned_cols=313 Identities=12% Similarity=0.028 Sum_probs=221.4
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEe-----ecCcccCEEEEEEcCCCCEEE-EEeCC
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-----IQGHKDSVSSLAFSMDGQLLA-SGGLD 128 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~-----~~~h~~~V~~v~~s~~g~~l~-t~s~d 128 (394)
+....+..|. .+..++|+|+ +++|++++.|+++++||+.+++.... ..+|...+.+++|+|||++|+ ++..+
T Consensus 53 ~~~~~l~~g~-~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~ 130 (426)
T d1hzua2 53 KIVKVIDTGY-AVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130 (426)
T ss_dssp SEEEEEECCS-SEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred cEEEEEeCCC-CeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence 4456676664 6899999995 56788899999999999988864432 346778888899999999875 45588
Q ss_pred CcEEEEeCCCCceEEEEecCC-----------CCEEEEEEcCCCCEEEEec-CCCeEEEEeCCcccee-eeecccCcCeE
Q 016187 129 GLVQIWDPSSGNLKCTLEGPG-----------GGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYL-NMFSGHGSSVT 195 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~-~~~~~h~~~v~ 195 (394)
+.+++||..+++....+..+. +....+.+++++..++... ..+.+.+++....... ....++...+.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 999999999998877665443 3344556666666554433 3455555555443322 23346777888
Q ss_pred EEEECCCCCeEEEEe-CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCC-E-EEEEeCCCcEEEEECCC----
Q 016187 196 CGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DST-L-ALSGSKDGSVHMVNITT---- 267 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~-l~~g~~dg~i~i~d~~~---- 267 (394)
.++|+|++++++++. .+..+.+++..+++.+.......... ......+.+ ... . .++.+.|+.+.+|+...
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~ 289 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH-PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP 289 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC-CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCT
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc-ccceeeeecCCCCceEEeccCCCceEEEeeccccccc
Confidence 999999999887665 45668999999988776654322111 111122222 222 2 22334577777777543
Q ss_pred ---CcEEEEeccCCCCEEEEEECCCCCeEEE-------EeCCCcEEEEeCCCCCccee----------ccCCCCEEEEEE
Q 016187 268 ---GKVVSSLVSHTDSIECIGFSRSSPWAAT-------GSMDQKLIIWDLQHSLPRST----------CDHEDGVTCLMW 327 (394)
Q Consensus 268 ---~~~~~~~~~h~~~i~~v~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~----------~~~~~~v~~~~~ 327 (394)
++....+.+|...+..++|+|++++|++ ++.|++|++||+.+...... ..+...|..++|
T Consensus 290 ~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f 369 (426)
T d1hzua2 290 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369 (426)
T ss_dssp TTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE
T ss_pred cccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEE
Confidence 4788889999999999999999999994 55688999999977543221 235567999999
Q ss_pred eCCCCEEEEE-----eCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEE
Q 016187 328 LGTSKYVVTG-----CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFL 376 (394)
Q Consensus 328 ~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 376 (394)
+|||++++.. +.+|.|+|||..|++....++++. .++|+|+|-
T Consensus 370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp CSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred CCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 9999977543 358899999999999999999875 346777663
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-27 Score=209.24 Aligned_cols=233 Identities=14% Similarity=0.163 Sum_probs=186.9
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~ 138 (394)
...+|+..|.+++++|. ..+++++.|+++++|++...+ ....+.++++++++..++++ .++.+.+|+..+
T Consensus 41 ~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 110 (287)
T d1pgua2 41 MHQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFT 110 (287)
T ss_dssp EECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT
T ss_pred CCCCCCCCEEEEEecCC--CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccc
Confidence 34689999999999874 357899999999999975432 23457788999998777765 466788999999
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEecCC-CeEEEEeCCccceeeee-cccCcCeEEEEECCCCCeEEEEeCCCcEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-STVWMWNADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-~~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 216 (394)
++....+.... .+ .++++++..+++++.+ +.+++|++........+ ..|...+++++|+|++++|++|+.||.|+
T Consensus 111 ~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 187 (287)
T d1pgua2 111 GDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 187 (287)
T ss_dssp CCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccccc
Confidence 98887776443 33 4567778877777766 57999998776554443 35778899999999999999999999999
Q ss_pred EEcCCCCceEEEEcCCCCcccCeEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCCEEEEE
Q 016187 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~v~ 285 (394)
+||+.+++.... ....|...|.+++|+|. +.++++|+.|++|++||+++ ++.+..+.+|...|.+++
T Consensus 188 i~d~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~ 265 (287)
T d1pgua2 188 LYDLQSREVKTS--RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL 265 (287)
T ss_dssp EEETTTTEEEEC--CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred ceeecccccccc--cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE
Confidence 999988775432 22457788999999875 46899999999999999976 556777889999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeC
Q 016187 286 FSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
|+|++ .+++++.|++|++|++
T Consensus 266 ~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 266 WETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCC-EEEEEECCCeEEEEEE
Confidence 99986 5889999999999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=1.2e-25 Score=197.47 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=213.4
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC
Q 016187 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~ 201 (394)
++++.|++|.+||+.+++.+.++... ..+..++|+|++++| ++++.++.|++||+.+++.+..+..+.. +..++|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence 46778999999999999998888754 457889999999976 5677899999999999998888877664 57889999
Q ss_pred CCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeccCCC
Q 016187 202 DGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 202 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
+++.++ ++..++.+++|+..+++....+.. .....++.++|++..++ ++..++.+.+|+..+++.+..+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GR 158 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CS
T ss_pred ccccccccccccceeeecccccceeeeeccc----cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CC
Confidence 998655 566778899999999888777763 34578899999998775 556688899999999988877764 45
Q ss_pred CEEEEEECCCCCeEEEEeCC-CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeEEE
Q 016187 280 SIECIGFSRSSPWAATGSMD-QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV---DGKVRVWDSLSGDCVR 355 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~ 355 (394)
.+..++++|++.++++++.+ +.+.+|+...............+..+++++++..++.++. ++.|++||..+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence 67889999999988877765 5566777766555455555666788999999998876643 4689999999999998
Q ss_pred EeecccCceeEEEEccCCCEE-EEEeCCCcEEEEeccCC
Q 016187 356 TFSGHRDAIQAISVSAHQDFL-VSVSLDGTARVFEIADF 393 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iw~~~~~ 393 (394)
.+..+. .+.+++|+||+++| ++++.|++|++||+++.
T Consensus 239 ~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 239 RIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 887644 57899999999976 67888999999998764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=9.8e-27 Score=207.65 Aligned_cols=277 Identities=12% Similarity=0.062 Sum_probs=214.4
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecC--cccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCC----
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGG---- 150 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~--h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~---- 150 (394)
.++++++.|++|++||+++++.+.++.. +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 4789999999999999999999988865 34567899999999987 4667899999999999999887765543
Q ss_pred -CEEEEEEcCCCCEEEEec------------CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 151 -GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 151 -~v~~~~~~~~~~~l~~~s------------~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
.+..++|+|++++++++. .+..+.+||..+++....+..+ ..+.+++|+|+|+++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--Ccce
Confidence 234689999999887765 4678889999988877776644 45778899999999999864 4778
Q ss_pred EcCCCCceEEEEcCCCCcccC--------------------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-ecc
Q 016187 218 WNPKSGENIHVIRGHPYHTEG--------------------LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVS 276 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~--------------------i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~ 276 (394)
||+.+++....+......... ........+......+..++.+.+|++.+++.... +..
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 999998877766532211100 00011111111222233455689999998876543 455
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 356 (394)
+...+..++++|++.+++.+ ++.+++||+.+........+...+.+++|+|++++|++++.+++|++||+.+++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 77788899999999998776 5889999999887777777777889999999999999999999999999999999998
Q ss_pred eec
Q 016187 357 FSG 359 (394)
Q Consensus 357 ~~~ 359 (394)
++-
T Consensus 317 i~~ 319 (337)
T d1pbyb_ 317 VDL 319 (337)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=6.4e-27 Score=217.13 Aligned_cols=302 Identities=10% Similarity=0.001 Sum_probs=205.8
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee--E---eecCcccCEEEEEEcCCCCEE-EEEeC
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--S---EIQGHKDSVSSLAFSMDGQLL-ASGGL 127 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~--~---~~~~h~~~V~~v~~s~~g~~l-~t~s~ 127 (394)
.+....+..| ..++.++|+|+ ++++++++.|+++++||+.+++.. . ...+|.+.+.++.|||||++| ++++.
T Consensus 52 ~~v~~~~~~g-~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 52 YEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp CCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CcEEEEEeCC-CCeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence 3445666666 36999999995 677888999999999999877632 2 234677788888899999986 67888
Q ss_pred CCcEEEEeCCCCceEEEEec-----------CCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeec-ccCcCe
Q 016187 128 DGLVQIWDPSSGNLKCTLEG-----------PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFS-GHGSSV 194 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v 194 (394)
+++|++||..+++.+..+.. +.+....+.++|++..+ ++...++.+.+|+..+.+...... .+...+
T Consensus 130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~ 209 (432)
T d1qksa2 130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCcc
Confidence 99999999999998876653 33456778999998865 566778999999988766544333 345677
Q ss_pred EEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-
Q 016187 195 TCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGK- 269 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~- 269 (394)
.+++|+|+|+++++++. +..+.++|..+++....+.... .+............+....+.. .++.+.+|+.....
T Consensus 210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~ 289 (432)
T d1qksa2 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289 (432)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc
Confidence 89999999998776665 4578999998877665543211 1222233333333333333332 25566666543321
Q ss_pred ------EEEEecc-------------------------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccC
Q 016187 270 ------VVSSLVS-------------------------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH 318 (394)
Q Consensus 270 ------~~~~~~~-------------------------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 318 (394)
....+.. |.....++++ |+++.+++++.|+.+++|++.+. .....|
T Consensus 290 ~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~--~~l~~~ 366 (432)
T d1qksa2 290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW--AGITEG 366 (432)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHH--HTCCSS
T ss_pred cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccc--cccCCC
Confidence 1111111 1111222333 56666777777777777775332 112356
Q ss_pred CCCEEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCeEEEEeecc
Q 016187 319 EDGVTCLMWLGTSKYVVTGC-----VDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~h 360 (394)
...+.+++|+|+|++|+.+. .+|.|.|||..|+++.+.+++.
T Consensus 367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 67789999999999886654 4689999999999999888864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=2.8e-25 Score=198.88 Aligned_cols=285 Identities=11% Similarity=0.016 Sum_probs=213.0
Q ss_pred EEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEec
Q 016187 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 70 ~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~ 147 (394)
+++++ ++.+|++++.|++|.+||+.+++.+.+++ .|...+.+++|+|||++| ++++.++.|++||+.+++....+..
T Consensus 2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46777 56789999999999999999999998886 456678899999999987 4556789999999999988877654
Q ss_pred CCC------CEEEEEEcCCCCEEEEec------------CCCeEEEEeCCccceeeeeccc--CcCeEEEEECCCCCeEE
Q 016187 148 PGG------GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 148 ~~~------~v~~~~~~~~~~~l~~~s------------~d~~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~ 207 (394)
... .+..++|+|+++++++++ .+..+.+|+..+++....+..+ ...+..+.++++++.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 332 345689999999887664 4678889998877655443332 23445566777777665
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC--------------------------CCCEEEEEeCCCcEE
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--------------------------DSTLALSGSKDGSVH 261 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------------------~~~~l~~g~~dg~i~ 261 (394)
++ +.+.+|++.+++.+..+..+.. ...+.++| ....++++..+..+.
T Consensus 161 ~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T d1jmxb_ 161 AG---PDIYKMDVKTGKYTVALPLRNW----NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233 (346)
T ss_dssp ES---SSEEEECTTTCCEEEEECSTTC----CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred eC---CcceEEEccCCCEEEEEecCCC----ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence 53 5689999999888777653221 11111222 223334445566788
Q ss_pred EEECCCCcEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 262 MVNITTGKVVSS-LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 262 i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
+|++.++..... ...|...+..+.+++++.+++... ++.+.+||+.+........+...+.+++|+||+++|++|+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d 312 (346)
T d1jmxb_ 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 312 (346)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC
Confidence 999988876544 456788899999999998888766 457999999887665555566678999999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecccCc
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
|.|++||+.+++.+++++...+.
T Consensus 313 ~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 313 NDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSSSC
T ss_pred CcEEEEECccCCEEEEEECCCCC
Confidence 99999999999999998855443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.1e-25 Score=196.98 Aligned_cols=265 Identities=10% Similarity=0.054 Sum_probs=203.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccC-----
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHG----- 191 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~----- 191 (394)
+||++++.|++|+|||+.+++.+..+..+ ...+..++|+|+|+++ ++++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 48999999999999999999998888654 3456789999999976 567789999999999998877766543
Q ss_pred cCeEEEEECCCCCeEEEEe------------CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 192 SSVTCGDFTPDGKTICTGS------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
..+..++|+|++++++++. .+..+.+||..+++....+.. ...+..++++|+++++++++. .
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEESS--S
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc----cCCceEEEEcCCCCEEEEEcC--C
Confidence 2345789999999998776 467889999999887777653 234677899999999999864 4
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCC------------------------eEEEEeCCCcEEEEeCCCCCcce-
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSP------------------------WAATGSMDQKLIIWDLQHSLPRS- 314 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~------------------------~l~s~s~dg~i~iwd~~~~~~~~- 314 (394)
+.+||..+++....+..+... ....+++++. ....+..++.+.+|++.......
T Consensus 156 ~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
T d1pbyb_ 156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred cceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence 778999999888776543221 1111222211 11112234457888877654332
Q ss_pred -eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 315 -TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 315 -~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
...+...+.++.+.+++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 23456678888999999988766 5899999999999998886 5667899999999999999999999999999876
Q ss_pred C
Q 016187 394 K 394 (394)
Q Consensus 394 ~ 394 (394)
+
T Consensus 312 ~ 312 (337)
T d1pbyb_ 312 E 312 (337)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=2.5e-25 Score=199.13 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=204.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeeccc
Q 016187 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
++|++++++|++++.+++|.+||+.+++.+.+++. +...+..++|+|+++++ ++++.++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 57899999999999999999999999999988874 44567899999999976 56678899999999998877655432
Q ss_pred C------cCeEEEEECCCCCeEEEEe------------CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 191 G------SSVTCGDFTPDGKTICTGS------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 191 ~------~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
. ..+..++|+|||++++.++ .++.+.+|+..+++....+..+. ....+..+.+++++.+++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEE
Confidence 2 2345789999999987765 47788899887766443322111 123355566777777665
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC--------------------------eEEEEeCCCcEEEEe
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP--------------------------WAATGSMDQKLIIWD 306 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~--------------------------~l~s~s~dg~i~iwd 306 (394)
+ ++.+.+|++.+++.+..+..+.. ...+.++|++. .++++..++.+.+|+
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred e---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 4 35689999999998887764422 22333444333 233344456677888
Q ss_pred CCCCCcce--eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCc
Q 016187 307 LQHSLPRS--TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT 384 (394)
Q Consensus 307 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 384 (394)
+....... ...+...+..+.+++++.+++.+. ++.|++||..+++.++.+. +...+.+++|+||+++|++++.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~ 314 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND 314 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 77654332 235667788899999988887765 4689999999999998876 4557899999999999999999999
Q ss_pred EEEEeccCCC
Q 016187 385 ARVFEIADFK 394 (394)
Q Consensus 385 i~iw~~~~~~ 394 (394)
|++||+++.|
T Consensus 315 v~v~D~~t~~ 324 (346)
T d1jmxb_ 315 LAVFNPDTLE 324 (346)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECccCC
Confidence 9999998753
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=2.4e-22 Score=182.20 Aligned_cols=306 Identities=11% Similarity=0.014 Sum_probs=221.2
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEe----cCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC--------
Q 016187 60 FSGHSDEVYSVACSPTDATLVATG----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-------- 127 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg----~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-------- 127 (394)
..++..++..++++|++.+++++. +..+.+++||..+++.+..+.++..+ .++|||||++|++++.
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence 346788999999999877665542 34567999999999999998877654 7999999999988753
Q ss_pred --CCcEEEEeCCCCceEEEEecCCCCE-------EEEEEcCCCCEEEEe--cCCCeEEEEeCCccceeeeecccCcCeEE
Q 016187 128 --DGLVQIWDPSSGNLKCTLEGPGGGV-------EWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (394)
Q Consensus 128 --d~~i~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~--s~d~~i~iw~~~~~~~~~~~~~h~~~v~~ 196 (394)
++.|.+||..+++.+..+..+.... ..+.|+++++.++.. ..++.+.+|+....+... +.....+
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 169 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTC 169 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE----Eecccee
Confidence 5789999999999887776655433 346788888765444 445678888887665443 3334567
Q ss_pred EEECCCCCeE-EEEeCCCcEEEEcCCCCceEEEEcCCCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 016187 197 GDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 197 ~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 272 (394)
+.|+|+++.+ ++.+.|+++.+|+...++.......... .......+.+++++. ++..+.++.+.+|+...+....
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEE
Confidence 8899998755 6888999999999988776554432211 111223345555554 4556678899999988765332
Q ss_pred --EeccCC----------CCEEEEEECCCCCe----------EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 273 --SLVSHT----------DSIECIGFSRSSPW----------AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 273 --~~~~h~----------~~i~~v~~~~~~~~----------l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
....+. .....+++++++.. +++...++.+.+||+.+........+...+..++|+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD 328 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD 328 (373)
T ss_pred EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCC
Confidence 221111 12334455555544 34556677899999988877777777888999999999
Q ss_pred CCE--EEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 331 SKY--VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 331 ~~~--l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
++. +++++.|+.|++||+.+++.++++.++....+.|++..+
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 984 468899999999999999999999988877778877543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=4.5e-22 Score=178.92 Aligned_cols=293 Identities=13% Similarity=0.112 Sum_probs=201.7
Q ss_pred EEEcCCCCcEEEEe----cCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCCcEEEEe
Q 016187 70 VACSPTDATLVATG----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWD 135 (394)
Q Consensus 70 ~~~~p~~~~~lasg----~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~~i~vwd 135 (394)
.+.+|++.+++++. ..+.++++||..+++.+.++..+..+ .++|||||++|++++ .|+.|++||
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 35678666655543 35678999999999999988776554 799999999887653 478999999
Q ss_pred CCCCceEEEEecCCC-------CEEEEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcC-------eEEEEE
Q 016187 136 PSSGNLKCTLEGPGG-------GVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSS-------VTCGDF 199 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~-------v~~~~~ 199 (394)
+.+++.+..+..+.. ....++|+|+++.++.++ .+..+.+|+..+++.+..+..+... ...+.+
T Consensus 85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
T d2bbkh_ 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164 (355)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence 999998877654332 234578999999776654 5678999999988877766544321 123445
Q ss_pred CCCCCeEEEE-eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--Eecc
Q 016187 200 TPDGKTICTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS--SLVS 276 (394)
Q Consensus 200 ~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~ 276 (394)
+++++.++.. ..++.+.+++...... .+...+....+.+++..++.++.++.+++|++..++... ....
T Consensus 165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 236 (355)
T d2bbkh_ 165 CRDGSLAKVAFGTEGTPEITHTEVFHP--------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA 236 (355)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSC--------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES
T ss_pred cCCCCEEEEEecCCCeEEEEecccccc--------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC
Confidence 5555544332 2233344444332211 112223445677888888999999999999998875321 1111
Q ss_pred C----------CCCEEEEEECCCCCeEEEEeCC----------CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC--EE
Q 016187 277 H----------TDSIECIGFSRSSPWAATGSMD----------QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK--YV 334 (394)
Q Consensus 277 h----------~~~i~~v~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~l 334 (394)
+ ......+++++++..++....+ ..|.+||+.+........+...+.+++|+|+++ ++
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~ 316 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY 316 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEE
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 1 1223457889998877665433 369999998776655555556688999999997 45
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
++++.|+.|++||+.+++.++++.++...-..+.+..+
T Consensus 317 v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 317 ALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 67778999999999999999999877655555555443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=2.4e-20 Score=168.82 Aligned_cols=280 Identities=12% Similarity=0.039 Sum_probs=201.6
Q ss_pred cCcccCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------
Q 016187 104 QGHKDSVSSLAFSMDGQLLASGG-----LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---------- 168 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~s-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---------- 168 (394)
..+..++.+++++|||+.++... ..+.|.+||..+++.+.++..+..+ .++|+|+|+++++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 45788899999999999887642 3457999999999999888765543 689999999988764
Q ss_pred CCCeEEEEeCCccceeeeecccCcCe-------EEEEECCCCCeEEEE--eCCCcEEEEcCCCCceEEEEcCCCCcccCe
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSV-------TCGDFTPDGKTICTG--SDDATLRVWNPKSGENIHVIRGHPYHTEGL 239 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i 239 (394)
.++.|.+||..+++.+..+..+.... ..+.|+++++.++.. ..++.+.+|+....+...... ..
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 167 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-------SP 167 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-------cc
Confidence 45789999999998877766554433 346888988876554 445678999987766544322 35
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccC------CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 016187 240 TCLTISADSTLA-LSGSKDGSVHMVNITTGKVVSSLVSH------TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP 312 (394)
Q Consensus 240 ~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 312 (394)
.++.++|+++.+ ++.+.|+++.+|+...++.......+ ......+.+++++.+ +..+.++++.+|+......
T Consensus 168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGA 246 (373)
T ss_pred eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeE
Confidence 577889988754 67889999999999988766554332 122344556665544 4556788899998765422
Q ss_pred ceec---c----------CCCCEEEEEEeCCCC----------EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEE
Q 016187 313 RSTC---D----------HEDGVTCLMWLGTSK----------YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 313 ~~~~---~----------~~~~v~~~~~~~~~~----------~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
.... . .......+++++++. .+++...++.+.+||..+++.+..+. +...+..++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~ 325 (373)
T d2madh_ 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV 325 (373)
T ss_pred EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence 1110 0 111223344555544 44556677889999999999998876 5567899999
Q ss_pred ccCCC--EEEEEeCCCcEEEEeccCCC
Q 016187 370 SAHQD--FLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 370 ~~~~~--~l~s~s~dg~i~iw~~~~~~ 394 (394)
+|||+ ++++++.|++|++||+.+.|
T Consensus 326 spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 326 AQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 99998 45789999999999998754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=7.6e-20 Score=162.38 Aligned_cols=281 Identities=12% Similarity=0.109 Sum_probs=190.5
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEee--cCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEE---ecCCCC
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTL---EGPGGG 151 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~--~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~~~~~~~~~~---~~~~~~ 151 (394)
.++++++.|++|++|+++....+..+ ..|.+.|..|+|||||++|++++ .|+.|++|++.......++ ......
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 35678899999999998754333222 35888999999999999986554 5899999998765433222 223445
Q ss_pred EEEEEEcCCCCEEEEecC-CCeEEEEeCCcccee--eeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEE
Q 016187 152 VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH 227 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~ 227 (394)
+..++|+|++++|++++. ++.+.+|+....... .....+...+.++.|+|++++++.++. +..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence 677999999998888774 678898887654332 233456667788899999998887764 4569999987654322
Q ss_pred EEc---CCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----EEEEec------cCCCCEEEEEECCCCCeE
Q 016187 228 VIR---GHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGK----VVSSLV------SHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 228 ~~~---~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~----~~~~~~------~h~~~i~~v~~~~~~~~l 293 (394)
... ...........+.+++++.+++... ..+...+++..... ....+. ........++++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 211 1112334567899999998876554 56677888764321 222221 123456778899999876
Q ss_pred EE-EeCCCcEEEEeCCCCCcce----eccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEE--ECCCCeE--EEEee
Q 016187 294 AT-GSMDQKLIIWDLQHSLPRS----TCDHEDGVTCLMWLGTSKYVVTGC-VDGKVRVW--DSLSGDC--VRTFS 358 (394)
Q Consensus 294 ~s-~s~dg~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iw--d~~~~~~--~~~~~ 358 (394)
+. +..++.+.+|++....... .......+..++|+|+|++|++++ .++.|++| |..+|++ +.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~ 319 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 319 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence 55 4567889999876442221 122334567889999999987765 46889998 5677765 33454
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=7.6e-20 Score=162.41 Aligned_cols=270 Identities=12% Similarity=0.148 Sum_probs=185.0
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEE--EecCCCCEEEEEEcCCCCEEE-EecCCCeEEEEeCCccceeeee---cccCcCe
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMF---SGHGSSV 194 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~-~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v 194 (394)
.+++++.|++|++|++.+...+.. ...+.+.+..++|+|+|++|+ ++..|+.|++|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 357788999999999875543322 235678899999999999885 4556899999998765432222 2234556
Q ss_pred EEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEE
Q 016187 195 TCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVS 272 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~ 272 (394)
..++|+|||++|++++. ++.|++|+............ ..+...+.++.++|+++++++++ .+..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccc-cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence 78999999999988875 67899998776554333221 12344567789999999887776 45679999987653221
Q ss_pred E------eccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcce-----------eccCCCCEEEEEEeCCCCEE
Q 016187 273 S------LVSHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRS-----------TCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 273 ~------~~~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l 334 (394)
. ..........++|++++.+++... ..+...+|+........ ..........++++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 1 122345678899999998876554 55677788764322110 01123346678899999876
Q ss_pred EEE-eCCCeEEEEECCCCeEEEE---eecccCceeEEEEccCCCEEEEEe-CCCcEEEEecc
Q 016187 335 VTG-CVDGKVRVWDSLSGDCVRT---FSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEIA 391 (394)
Q Consensus 335 ~sg-~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~~ 391 (394)
+.. ..++.+.+|++........ ...+...+..++|+|||++|++++ .++.|++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 655 5678899998765543333 233455678999999999877665 56899999764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=4.9e-20 Score=165.34 Aligned_cols=278 Identities=13% Similarity=0.041 Sum_probs=193.3
Q ss_pred CEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe----------cCCCeE
Q 016187 109 SVSSLAFSMDGQLLASGG-----LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG----------SEDSTV 173 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------s~d~~i 173 (394)
++.-.+.+|||++++... .+.+|.+||..+++.+.++.....+ .++|+|++++|+++ ..++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 344446789999987653 4567999999999998888765444 68999999977654 347899
Q ss_pred EEEeCCccceeeeecccCc-------CeEEEEECCCCCeEEEEe--CCCcEEEEcCCCCceEEEEcCCCC----cccCeE
Q 016187 174 WMWNADRAAYLNMFSGHGS-------SVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRGHPY----HTEGLT 240 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~----~~~~i~ 240 (394)
++||..+++.+..+..+.. ....++|+|++++++.++ .+..+.+|+..+++.+..+..... ......
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 9999999887766543322 234578999999887664 567899999999987776653211 011223
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec---
Q 016187 241 CLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--- 316 (394)
Q Consensus 241 ~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--- 316 (394)
.+.++++++.++.. ..++.+.+++..... ..+...+....+.+++..++.++.++++.+|++.........
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 235 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 235 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccC
Confidence 34555665554443 233344444443322 123444556677888888999999999999998765332111
Q ss_pred c----------CCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCeEEEEeecccCceeEEEEccCCC--
Q 016187 317 D----------HEDGVTCLMWLGTSKYVVTGCVD----------GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-- 374 (394)
Q Consensus 317 ~----------~~~~v~~~~~~~~~~~l~sg~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-- 374 (394)
. .......+++++++..++....+ ..|.+||..+++.+..+.. ...+.+++|+|||+
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPL 314 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCE
T ss_pred CcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeE
Confidence 0 11223457889999888776543 3699999999999988874 44588999999997
Q ss_pred EEEEEeCCCcEEEEeccCCC
Q 016187 375 FLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~~~~ 394 (394)
++++++.|++|++||+++.|
T Consensus 315 l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCEEEEEECCCCC
Confidence 46678889999999987653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=2.3e-17 Score=153.97 Aligned_cols=319 Identities=11% Similarity=0.061 Sum_probs=191.5
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-----cCcccCEEEEEEcCCCCEEEEEeC---------CCcEEEE
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-----QGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIW 134 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-----~~h~~~V~~v~~s~~g~~l~t~s~---------d~~i~vw 134 (394)
.+.|.|+ +.++.. .|+.+++||+.+++....+ ..|...|.++.|||||++|+.++. ++.+.+|
T Consensus 21 ~~~W~~d-~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISD-HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSS-SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCC-CEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 4678884 556654 4678999999998866544 445688999999999999998753 5678899
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc------------------CcCeEE
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH------------------GSSVTC 196 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h------------------~~~v~~ 196 (394)
|+.+++.. .+..+.+.+..+.|+|+|+.++.. .++.+++|+..+++..+....+ ......
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCccc-ccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 99988753 467778889999999999988885 5678999998877655433221 122345
Q ss_pred EEECCCCCeEEEEeCCCc-EEEEcCC---CC----ceEEEEc-----------------C--CC----------------
Q 016187 197 GDFTPDGKTICTGSDDAT-LRVWNPK---SG----ENIHVIR-----------------G--HP---------------- 233 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~-i~vwd~~---~~----~~~~~~~-----------------~--~~---------------- 233 (394)
+.|+|||++|+....|.+ ++.|.+. .. .....++ . ..
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHH
T ss_pred cEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCcccc
Confidence 789999999998876544 4444321 00 0000000 0 00
Q ss_pred -CcccCeEEEEEcCCCCEEEEE-eCCC-----cEEEEECCCCcEEEEec-------------cCCCCEEEEEECCCCCeE
Q 016187 234 -YHTEGLTCLTISADSTLALSG-SKDG-----SVHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 234 -~~~~~i~~~~~~~~~~~l~~g-~~dg-----~i~i~d~~~~~~~~~~~-------------~h~~~i~~v~~~~~~~~l 293 (394)
.....+..+.|.+++.+++.. ...+ .+..+|..++....... .|........+.+++.++
T Consensus 256 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEE
Confidence 001124456677777655543 2222 23334555555432211 111122222223334456
Q ss_pred EEEeCCCcEEE--EeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCeEEEEe----eccc
Q 016187 294 ATGSMDQKLII--WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG------KVRVWDSLSGDCVRTF----SGHR 361 (394)
Q Consensus 294 ~s~s~dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg------~i~iwd~~~~~~~~~~----~~h~ 361 (394)
..+..||...| |+...............|..+.........+++..++ .|+--++..+...+.+ .+|.
T Consensus 336 ~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~ 415 (470)
T d2bgra1 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPER 415 (470)
T ss_dssp EEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTT
T ss_pred EEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCC
Confidence 67777776555 4665555555544555676663333333334444332 1333355544444444 4688
Q ss_pred CceeEEEEccCCCEEE---EEeCCCcEEEEeccC
Q 016187 362 DAIQAISVSAHQDFLV---SVSLDGTARVFEIAD 392 (394)
Q Consensus 362 ~~v~~l~~~~~~~~l~---s~s~dg~i~iw~~~~ 392 (394)
..+..++|||||+|++ ++...-.+++|+..+
T Consensus 416 ~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~ 449 (470)
T d2bgra1 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (470)
T ss_dssp BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC
Confidence 8899999999999977 333344577776554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=8.7e-18 Score=151.78 Aligned_cols=298 Identities=9% Similarity=-0.010 Sum_probs=193.5
Q ss_pred CCcEEEEEEcCCCCcE--EEEecCCC--eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe----------CCC
Q 016187 64 SDEVYSVACSPTDATL--VATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDG 129 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~--lasg~~d~--~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s----------~d~ 129 (394)
.+....++..|++... .++...++ .+++||..+++.+..+.++..+ .++|+|||+.|++++ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence 3444444555644432 23334444 4667799999999988877765 589999999888765 367
Q ss_pred cEEEEeCCCCceEEEEecCCC-------CEEEEEEcCCCCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEEEEECC
Q 016187 130 LVQIWDPSSGNLKCTLEGPGG-------GVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~ 201 (394)
.|++||..+++.+..+..+.. ....++|+|+|++++++. .++.+.+||+.+++....+..+..... +..
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~ 173 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPG 173 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccC
Confidence 899999999998877764432 123589999999887765 579999999999888777665544321 111
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCC---CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--cc
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH---PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VS 276 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~ 276 (394)
....+++.+.||++.+|+............. ..+...+....+.+++..+.+. .+.+.++++..+...... ..
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 251 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence 2345666677788777776554332222111 1112233445667776655543 456667776655433221 11
Q ss_pred C----------CCCEEEEEECCCCCeEEEEeCC---------CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCE--EE
Q 016187 277 H----------TDSIECIGFSRSSPWAATGSMD---------QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY--VV 335 (394)
Q Consensus 277 h----------~~~i~~v~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~ 335 (394)
+ ......+++++++..++....+ .+|.+||..+........+...+..++|+|+++. ++
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~ 331 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEE
Confidence 1 1122357788888766554322 3588999987765555555566888999999973 45
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecccCceeEEEE
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
++..++.|++||..+++.++++.....+ +.|++
T Consensus 332 s~~~~~~v~v~D~~tgk~~~~i~~g~~P-~~l~~ 364 (368)
T d1mdah_ 332 NSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSV 364 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCSCC-CEEEC
T ss_pred EeCCCCeEEEEECCCCCEEEEEECCCCC-CEEEE
Confidence 6778899999999999999998854433 34443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.76 E-value=1e-18 Score=158.08 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=203.7
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeec------------------------------CcccCEEEEEEcCCCCEEEEE-e
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQ------------------------------GHKDSVSSLAFSMDGQLLASG-G 126 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~------------------------------~h~~~V~~v~~s~~g~~l~t~-s 126 (394)
..++||+.+|.+++|++.+++.+.++. .|........++|||++|++. .
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 458899999999999999888776542 133445566678999988655 5
Q ss_pred CCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCC--EEEEecCCC-----------------eEEEEeCCccceeee
Q 016187 127 LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGH--IVLAGSEDS-----------------TVWMWNADRAAYLNM 186 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~s~d~-----------------~i~iw~~~~~~~~~~ 186 (394)
.+..|.++|+.+++....+.- ....+..++|+|+++ +++..+.+. .+..+|..+.+....
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 778999999999998877664 356788999999998 444444332 234467776666555
Q ss_pred ecccCcCeEEEEECCCCCeEEEEeCCC-cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+... ..+..++|+|+|+++++.+.+. .+..++..+.+....+.... ....+.+.|+|+++..+ .++.+.+++.
T Consensus 172 I~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n----~p~~~~~~~dGk~~~v~-~~~v~vvd~~ 245 (441)
T d1qnia2 172 VIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN----VERIAAAVKAGNFKTIG-DSKVPVVDGR 245 (441)
T ss_dssp EEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE----HHHHHHHHHTTCCBCCT-TCCCCEEECS
T ss_pred EecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC----ccceEEEecCCCEEEeC-CCCcEEEEcc
Confidence 5433 3456789999999998887654 34344433333221111000 01112356788876554 4677788877
Q ss_pred CCCcEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCc--------ce-ecc---CCCCEEEEEEeCCCC
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLP--------RS-TCD---HEDGVTCLMWLGTSK 332 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd~~~~~~--------~~-~~~---~~~~v~~~~~~~~~~ 332 (394)
...+.+..+..... ...+.++|+++++ +++..++++.+||+.+... +. ... ..-......|.+++.
T Consensus 246 ~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~ 324 (441)
T d1qnia2 246 GESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324 (441)
T ss_dssp SSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence 77777777766544 5678999999986 5677899999999864210 00 001 111244568999998
Q ss_pred EEEEEeCCCeEEEEECC----------CCeEEEEe-----ecccCceeEEEEccCCCEEEEE---eCCCc
Q 016187 333 YVVTGCVDGKVRVWDSL----------SGDCVRTF-----SGHRDAIQAISVSAHQDFLVSV---SLDGT 384 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~----------~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s~---s~dg~ 384 (394)
...+...|..|..|++. ....+..+ .||...+.+.+++|||+||+|+ |.|+.
T Consensus 325 ~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 325 AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccC
Confidence 88899999999999963 12234444 5888888889999999999999 55543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.3e-16 Score=143.99 Aligned_cols=277 Identities=8% Similarity=-0.045 Sum_probs=182.0
Q ss_pred cccCEEEEEEcCCCCEEE---EEeCCCc--EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec----------CC
Q 016187 106 HKDSVSSLAFSMDGQLLA---SGGLDGL--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------ED 170 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~---t~s~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d 170 (394)
+.++...++.+++++... +...++. |.+||..+++.+..+..+..+ .++|+|+++.+++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 445555666788887532 2344444 666799999998888776654 589999999877643 47
Q ss_pred CeEEEEeCCccceeeeecccCc-------CeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEEEEcCCCCcccCeEEE
Q 016187 171 STVWMWNADRAAYLNMFSGHGS-------SVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (394)
Q Consensus 171 ~~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~ 242 (394)
+.|++||..+++.+..+..+.. ....++|+|||++|+.+. .++.+.+||+.+++....+...... .+
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~--- 170 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--HI--- 170 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--CC---
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--eE---
Confidence 7899999999887776654322 223589999999998775 5799999999999887776542110 11
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEE------eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVVSS------LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC 316 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~------~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 316 (394)
.......+++.+.||++.++++........ ...+...+..+.+.+++..+.+. .+.+.++++.........
T Consensus 171 -~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~ 247 (368)
T d1mdah_ 171 -HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKA 247 (368)
T ss_dssp -EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEEC
T ss_pred -ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEe
Confidence 112234556667777777777654432211 12233444556677776555443 344555555432211110
Q ss_pred -------------cCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecccCceeEEEEccCCC
Q 016187 317 -------------DHEDGVTCLMWLGTSKYVVTGCVD---------GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 317 -------------~~~~~v~~~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
........+++++++..++....+ ..|.+||..+++.+..+.. ...+..++|+||++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~ 326 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGA 326 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSS
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCC
Confidence 011122346788888877655322 3599999999999988774 45789999999997
Q ss_pred --EEEEEeCCCcEEEEeccCC
Q 016187 375 --FLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 375 --~l~s~s~dg~i~iw~~~~~ 393 (394)
++++++.|++|++||..+-
T Consensus 327 ~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 327 SDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSC
T ss_pred EEEEEEeCCCCeEEEEECCCC
Confidence 3567788999999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=4.3e-14 Score=131.47 Aligned_cols=297 Identities=10% Similarity=0.034 Sum_probs=171.4
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEec---------CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~---------~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
.|..|...|.+++|+|+ ++.||.++ .++.+++||+.+++. ..+..|.+.+..+.|||||+++|.. .++
T Consensus 56 ~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~ 132 (470)
T d2bgra1 56 TFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNN 132 (470)
T ss_dssp TTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred hhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecc
Confidence 34556788999999996 45556553 356788999998874 5688899999999999999999986 467
Q ss_pred cEEEEeCCCCceEEEEec------------------CCCCEEEEEEcCCCCEEEEecCCCe-EEEEe-------------
Q 016187 130 LVQIWDPSSGNLKCTLEG------------------PGGGVEWVSWHPRGHIVLAGSEDST-VWMWN------------- 177 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~s~d~~-i~iw~------------- 177 (394)
.+.+|+..+++....... ..+....+.|+|+|+.|+....|.+ +..|.
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCe
Confidence 899999988876543221 1123455789999999988765432 33222
Q ss_pred ----------------------CCccceeeee-----------cccCcCeEEEEECCCCCeEEEE-eCCC---c--EEEE
Q 016187 178 ----------------------ADRAAYLNMF-----------SGHGSSVTCGDFTPDGKTICTG-SDDA---T--LRVW 218 (394)
Q Consensus 178 ----------------------~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~l~s~-~~dg---~--i~vw 218 (394)
+..+...... ......+..+.|.++++.++.. ...+ . +..+
T Consensus 213 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~ 292 (470)
T d2bgra1 213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (470)
T ss_dssp EEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred eeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEe
Confidence 1111110000 0111234556777777655432 2221 2 3334
Q ss_pred cCCCCceEEEEcC-----C-----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCcEEEEeccCCCCEEEEEE
Q 016187 219 NPKSGENIHVIRG-----H-----PYHTEGLTCLTISADSTLALSGSKDGSVHMV--NITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 219 d~~~~~~~~~~~~-----~-----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~--d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
|..++........ . ..+..........+++.+++.+..+|..++| +...+. ...+..+...|..+ +
T Consensus 293 d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~-~ 370 (470)
T d2bgra1 293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGI-E 370 (470)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEE-E
T ss_pred cCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEE-E
Confidence 4555543222110 0 0011111122222333456677788766555 554443 44444455556665 3
Q ss_pred CCCCCe-EEEEeCCC----cEEEE--eCCCCCcce-----eccCCCCEEEEEEeCCCCEEEE---EeCCCeEEEEECCCC
Q 016187 287 SRSSPW-AATGSMDQ----KLIIW--DLQHSLPRS-----TCDHEDGVTCLMWLGTSKYVVT---GCVDGKVRVWDSLSG 351 (394)
Q Consensus 287 ~~~~~~-l~s~s~dg----~i~iw--d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s---g~~dg~i~iwd~~~~ 351 (394)
++++.. .+++..++ .-.|| ++....... ...|...+..+.|+|+++|++. |...-.+.+|+..++
T Consensus 371 ~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g 450 (470)
T d2bgra1 371 ALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (470)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCC
Confidence 333333 33443322 11344 333322111 1246677899999999999773 333446899999999
Q ss_pred eEEEEeecc
Q 016187 352 DCVRTFSGH 360 (394)
Q Consensus 352 ~~~~~~~~h 360 (394)
++++.++.+
T Consensus 451 ~~v~~le~n 459 (470)
T d2bgra1 451 KGLRVLEDN 459 (470)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 999998753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=2.7e-13 Score=122.24 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=161.6
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCC--EEEEEeCCC---------
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ--LLASGGLDG--------- 129 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~--~l~t~s~d~--------- 129 (394)
.|........+.|++..++++...+.+|.++|+.+++....+. .+...+..++|+|+|+ |++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 4555555666778777777888999999999999998877664 3567899999999998 444444332
Q ss_pred --------cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC-------------------------------
Q 016187 130 --------LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------------------- 170 (394)
Q Consensus 130 --------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------------------------------- 170 (394)
.+..+|..+.+....+... +....+.|+|+++++++.+.+
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 2355788888777666543 346779999999988766543
Q ss_pred ----------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EEEeCCCcEEEEcCCCCceE--------EEEcC
Q 016187 171 ----------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENI--------HVIRG 231 (394)
Q Consensus 171 ----------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~--------~~~~~ 231 (394)
+.+.++.....+.++.+..... ...++++|||+++ +++..+++|.|||+.+.+.. ..+.+
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 2233333333444444544433 4678999999987 56788999999998653210 01111
Q ss_pred CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CcEEEEe-----ccCCCCEEEEEECCCCCeEEEE
Q 016187 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----------GKVVSSL-----VSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 232 ~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~-----~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
.+...-+.....|+++|..+.+...|..|..|++.. ...+..+ .+|...+.+..++|+|+||+++
T Consensus 307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence 111222455568999999889999999999999741 2345554 3566666677899999999999
Q ss_pred eC
Q 016187 297 SM 298 (394)
Q Consensus 297 s~ 298 (394)
+.
T Consensus 387 ~k 388 (441)
T d1qnia2 387 SK 388 (441)
T ss_dssp ES
T ss_pred Cc
Confidence 53
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=2e-10 Score=97.39 Aligned_cols=235 Identities=9% Similarity=0.028 Sum_probs=156.0
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 146 (394)
..|++.+++..+++..+..+.+..++........ ...+ ......++++++|.++++....+.+++++..++.......
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~ 95 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD 95 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence 6889998655566666677777777654433222 2222 2335678999999988887777777777655554432222
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 147 ~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
.......+++.++++++++-.....+..++...................+++.|+++.+++...++.|..++.......
T Consensus 96 -~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~ 174 (260)
T d1rwia_ 96 -GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 174 (260)
T ss_dssp -SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred -eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence 2345788999999998887777777877776554322221122334568899999998888888899999998754432
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
.+.. ........+++.+++.++++....+.|..++.............-.....|++++++.++++-..+++|+.++
T Consensus 175 -~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 175 -VLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp -ECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -eeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 2221 1234467899999999998888889999888755432211122234578999999998888777777777665
Q ss_pred C
Q 016187 307 L 307 (394)
Q Consensus 307 ~ 307 (394)
.
T Consensus 252 ~ 252 (260)
T d1rwia_ 252 S 252 (260)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=2.7e-10 Score=96.58 Aligned_cols=234 Identities=7% Similarity=-0.026 Sum_probs=157.3
Q ss_pred CEEEEEEcCCCCEEEEe-cCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 151 GVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~-s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
....+++.++++++++. +..+.+..++............-......++++++++.+++....+.+++++..+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 45789999999976654 45577777766544322222222234567899999998888877777887776555433222
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
. .......+++.++++++++-..+..+..++...................+++++++.++++....++|..++...
T Consensus 95 ~----~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 95 D----GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp C----SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred e----eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence 1 123567899999999888877777788888765443222222234567899999999888888888999999876
Q ss_pred CCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 310 SLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 310 ~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
...... ...-.....+++.+++.++++-...+.|..++..... ...+. ..-.....|++.++++++++-..+++|+.
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 543332 2334557889999999988888888999988764433 22332 22234578999999998888777776665
Q ss_pred Ee
Q 016187 388 FE 389 (394)
Q Consensus 388 w~ 389 (394)
++
T Consensus 250 i~ 251 (260)
T d1rwia_ 250 LT 251 (260)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.31 E-value=2.4e-09 Score=92.69 Aligned_cols=237 Identities=10% Similarity=0.032 Sum_probs=157.1
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
+.+..+.. ...+..+++.|+|+++++...+++|+.|+..... ..+......+.+++|.++|+++++...++.+..|+
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence 33444432 2357889999999999999999999999876442 33344566789999999999999988888888877
Q ss_pred CCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc----------CCCCEEEEEECC
Q 016187 220 PKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----------HTDSIECIGFSR 288 (394)
Q Consensus 220 ~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------h~~~i~~v~~~~ 288 (394)
...... ...+... ........+.+.++++++++.+.++.+..++...+........ .......+.++.
T Consensus 96 ~~~~~~~~~~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~ 174 (302)
T d2p4oa1 96 LVKSDGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 174 (302)
T ss_dssp EECTTSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred ecccccceeecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence 543321 1222111 1234577889999999999999999999999887753322211 112345566654
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcc---eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee--cccCc
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPR---STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS--GHRDA 363 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~ 363 (394)
..++++.+..+.|..+++...... ...........+++.+++++.++...+++|..++.. ++...... ..-..
T Consensus 175 -~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 175 -NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIG 252 (302)
T ss_dssp -TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred -CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCC
Confidence 334556677788888887543211 111122334568999999988888889999999764 44333332 23345
Q ss_pred eeEEEE---ccCCCEEEEEeCC
Q 016187 364 IQAISV---SAHQDFLVSVSLD 382 (394)
Q Consensus 364 v~~l~~---~~~~~~l~s~s~d 382 (394)
.++++| ++|++.|+.++..
T Consensus 253 pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 253 STAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEEECCSTTTTTEEEEEECT
T ss_pred ceEEEEcCCCCCCCEEEEECCC
Confidence 789999 6788877655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.29 E-value=4.3e-09 Score=91.57 Aligned_cols=241 Identities=8% Similarity=0.052 Sum_probs=155.0
Q ss_pred EEEEEEcCCCCcEEEEecC------CCeEEEEEcCCCeeeEeecCc----ccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 67 VYSVACSPTDATLVATGGG------DDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~------d~~v~~w~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
.-.++|.|++..++++... +++|..|+..+++........ ...-..++|+++|+.|+++.....|...+.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 3567889865544443221 467888888777654333221 123568999999998888887777888887
Q ss_pred CCCceEEEEecCCC----CEEEEEEcCCCCEEEEecC---------------CCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 137 SSGNLKCTLEGPGG----GVEWVSWHPRGHIVLAGSE---------------DSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 137 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~s~---------------d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
..+..........+ ..+.+++.++|++.++-.. .+.++.++... +.... ...-...+.+
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~-~~~~~~pNGi 177 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQV-DTAFQFPNGI 177 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEE-EEEESSEEEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEe-eCCcceeeee
Confidence 65533211111111 3567899999998877432 23455554432 22222 2223344678
Q ss_pred EECCCCC-----eEEEEeCCCcEEEEcCCCCceEEE---EcC-CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 198 DFTPDGK-----TICTGSDDATLRVWNPKSGENIHV---IRG-HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 198 ~~~~~~~-----~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
+|+|++. +.++-+..+.|..||+.....+.. +.. ..........+++..+|+++++....+.|.+||...+
T Consensus 178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g 257 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence 8988764 445556778898888654433221 111 1111223567899999999998888999999999888
Q ss_pred cEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~ 309 (394)
+.+..+......+.+++|.|+++ ++++.+..++|..+++..
T Consensus 258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 77666666667889999999987 556677788888888754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.28 E-value=2.7e-08 Score=84.90 Aligned_cols=236 Identities=8% Similarity=0.123 Sum_probs=166.2
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc------cCcCeEEEEECCCC-CeEEE-EeCCCcEEEEcCCC
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG------HGSSVTCGDFTPDG-KTICT-GSDDATLRVWNPKS 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~------h~~~v~~~~~~~~~-~~l~s-~~~dg~i~vwd~~~ 222 (394)
....+++.++++++++-.....|++|+.+ ++.+..+.. .......+++.++. ..+++ .+.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 35778999999988887778899999865 444444321 11234455655543 34433 345567888875 4
Q ss_pred CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
++....+... .......+++.+++.++++....+.+.+++. +++.+.++ ..+......+++.+++.++++....+
T Consensus 102 g~~~~~~~~~--~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 GQFVRKFGAT--ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp SCEEEEECTT--TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred ccceeecCCC--cccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccc
Confidence 5555555322 2345778999999999998888888999886 45666654 34556788899999999888888899
Q ss_pred cEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecc--cCceeEEEEccCCCE
Q 016187 301 KLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGCV-DGKVRVWDSLSGDCVRTFSGH--RDAIQAISVSAHQDF 375 (394)
Q Consensus 301 ~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~ 375 (394)
.|++||......... .+.......+++.++++.+++-.. ++.|.+|+ .+|+.+..+... ......|++.+++.+
T Consensus 179 ~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 179 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred ceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence 999999765432222 123345788999999998877554 45799998 568888877533 234689999999976
Q ss_pred EEEEeCCCcEEEEeccCC
Q 016187 376 LVSVSLDGTARVFEIADF 393 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~~~ 393 (394)
++ ++.+++|++|+...+
T Consensus 258 ~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 VL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp EE-EETTTEEEEEECSCC
T ss_pred EE-EeCCCeEEEEEeeee
Confidence 65 457899999998764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.28 E-value=3.1e-08 Score=84.49 Aligned_cols=237 Identities=12% Similarity=0.151 Sum_probs=162.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC------CCCEEEEEEcCCC-CEEEE-ecCCCeEEEEeCCc
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-HIVLA-GSEDSTVWMWNADR 180 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~-~s~d~~i~iw~~~~ 180 (394)
....|+++++|+++++-..+..|++||.. |+.+..+... ......+++.++. ..+++ .+.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 45789999999988887788999999965 7666655321 1123455555543 33333 3445677777764
Q ss_pred cceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 181 AAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 181 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
+.....+. ........+++.++|+.+++....+.+.+++.. ++.+..+... .+......+++.+++.++++....+.
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~-~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccc-ccccccceeeeccceeEEeeeccccc
Confidence 33333332 334567788999999988888888889899864 5555555332 34456788899999999999999999
Q ss_pred EEEEECCCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCcceec--cCCCCEEEEEEeCCCCEE
Q 016187 260 VHMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l 334 (394)
|+++|. +++.+.++- +.......|++.+++.++++-.. +++|.+|+.......... ........++..+++.++
T Consensus 180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~ 258 (279)
T d1q7fa_ 180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVV 258 (279)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence 999996 456666663 34456889999999997776544 457999986544322221 122347788999998755
Q ss_pred EEEeCCCeEEEEECCCC
Q 016187 335 VTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~ 351 (394)
+ ++.+.+|++|.....
T Consensus 259 V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 259 L-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp E-EETTTEEEEEECSCC
T ss_pred E-EeCCCeEEEEEeeee
Confidence 5 567899999986544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.25 E-value=8.9e-09 Score=89.50 Aligned_cols=239 Identities=11% Similarity=0.121 Sum_probs=157.0
Q ss_pred CCEEEEEEcCCCCEEEEecC-------CCeEEEEeCCccceeeeecc----cCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSE-------DSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~-------d~~i~iw~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
.....++|.++|+++++... +++|..|+..++........ .......++|.++++.++.+.....|...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 34567899999997776443 46788899887654332211 12345689999999988888777778888
Q ss_pred cCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCcEEEEeccCCCCE
Q 016187 219 NPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSK---------------DGSVHMVNITTGKVVSSLVSHTDSI 281 (394)
Q Consensus 219 d~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~~---------------dg~i~i~d~~~~~~~~~~~~h~~~i 281 (394)
+...... ..+.... ..-...+.+++.++|.+.++-.. .|.|..++.. ++... +...-...
T Consensus 98 ~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~~~~p 174 (314)
T d1pjxa_ 98 QTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFP 174 (314)
T ss_dssp ETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSE
T ss_pred eCCCcEE-EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCCccee
Confidence 8765432 2111110 01123567899999998887432 2345555542 33322 22223345
Q ss_pred EEEEECCCCC-----eEEEEeCCCcEEEEeCCCCCcce----ec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 282 ECIGFSRSSP-----WAATGSMDQKLIIWDLQHSLPRS----TC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 282 ~~v~~~~~~~-----~l~s~s~dg~i~iwd~~~~~~~~----~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+.++|+|++. +.++-+..++|..|++....... .. ........+++..++++.++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 7788988764 44555677888888865321110 11 11223567888999998888888899999998
Q ss_pred CCCeEEEEeecccCceeEEEEccCCC-EEEEEeCCCcEEEEecc
Q 016187 349 LSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 349 ~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~ 391 (394)
..++.+..+.......++++|.++++ ++++.+..|+|..+++.
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 88887777776666789999999987 56777788988777754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.24 E-value=5.6e-09 Score=90.34 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=155.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeee
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNM 186 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~ 186 (394)
.+..++++|||+++++...+++|..|+.. ++.. .+......+..++|.++++++++...++.+..|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 47789999999999999999999999865 4333 334455678999999999999988888888887754322 1111
Q ss_pred e-cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC-------CCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 187 F-SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-------PYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 187 ~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
. .........+++.++++++++-+.++.+..++...+......... .........+.++. +.++++.+..+
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence 1 123456788999999999999888999999998776533222110 01112345555553 45667778888
Q ss_pred cEEEEECCCCcEEEE--eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEE---eCCC
Q 016187 259 SVHMVNITTGKVVSS--LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMW---LGTS 331 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~--~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~---~~~~ 331 (394)
.|..+++........ ..........+++++++.+.++...+++|..++......... ...-...++++| .+|+
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~ 265 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDC 265 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence 999888765432111 111233456799999999888888899999998765432221 122345789999 5677
Q ss_pred CEEEEEeCC
Q 016187 332 KYVVTGCVD 340 (394)
Q Consensus 332 ~~l~sg~~d 340 (394)
+.|..++..
T Consensus 266 ~~Lyvtt~~ 274 (302)
T d2p4oa1 266 TAIYVVTNG 274 (302)
T ss_dssp TEEEEEECT
T ss_pred CEEEEECCC
Confidence 777765543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.24 E-value=9e-09 Score=91.52 Aligned_cols=270 Identities=9% Similarity=0.081 Sum_probs=153.6
Q ss_pred EEEEeC--CCcEEE--EeCCCCceE--EEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee--cccCc
Q 016187 122 LASGGL--DGLVQI--WDPSSGNLK--CTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHGS 192 (394)
Q Consensus 122 l~t~s~--d~~i~v--wd~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~--~~h~~ 192 (394)
|++|+. .+.|.+ +|.+++++. ... ......+.+++|+|+++.|+++.. +.+..|.+.....+... .....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 455543 445544 455555542 121 223455778999999998877654 56667765432211111 11122
Q ss_pred CeEEEEECCCCCeE--EEEe-CCCcEEEEcCCC-CceE--EEEc----------C-CCCcccCeEEEEEcCCCCEEEEEe
Q 016187 193 SVTCGDFTPDGKTI--CTGS-DDATLRVWNPKS-GENI--HVIR----------G-HPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 193 ~v~~~~~~~~~~~l--~s~~-~dg~i~vwd~~~-~~~~--~~~~----------~-~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
....++++++++.+ +++. ..++|..+.+.. +... ..+. . .......+.++.++|+|++++++.
T Consensus 84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d 163 (365)
T d1jofa_ 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence 33456778888743 3332 235555543321 1110 0000 0 001123467899999999888775
Q ss_pred C-CCcEEEEECCC-CcEE--EEec--cCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCccee-------------
Q 016187 256 K-DGSVHMVNITT-GKVV--SSLV--SHTDSIECIGFSRSSPWAAT-GSMDQKLIIWDLQHSLPRST------------- 315 (394)
Q Consensus 256 ~-dg~i~i~d~~~-~~~~--~~~~--~h~~~i~~v~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~------------- 315 (394)
. ...|.+|+... ++.. .... ........+.|+|+++++.. ...+++|.+|++........
T Consensus 164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T d1jofa_ 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence 4 45788887653 3322 2222 23456888999999998754 45688999999864321110
Q ss_pred -------ccCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCC-eEEEEe-----ecccCceeEEEEcc-CCCE
Q 016187 316 -------CDHEDGVTCLMWLGTSKYVVTGCV------DGKVRVWDSLSG-DCVRTF-----SGHRDAIQAISVSA-HQDF 375 (394)
Q Consensus 316 -------~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~-~~~~~~-----~~h~~~v~~l~~~~-~~~~ 375 (394)
.........+.++|++++|+++.. .+.|..|++... ...+.. ......-.+++++| +|++
T Consensus 244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~ 323 (365)
T d1jofa_ 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence 011122456889999999988742 234777775433 222211 12234457799998 7897
Q ss_pred EEEE-eCCCcEEEEeccC
Q 016187 376 LVSV-SLDGTARVFEIAD 392 (394)
Q Consensus 376 l~s~-s~dg~i~iw~~~~ 392 (394)
|+.+ ..++.|.+|++..
T Consensus 324 l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 324 MAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEECSSSCEEEEEEEET
T ss_pred EEEEeCCCCeEEEEEEeC
Confidence 7665 5679999998753
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.6e-08 Score=83.23 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=142.1
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
.++|-|....+. ..+..+...+.+.+|||||++||-..... .+.+.+...+... .+..+.+......|+|++..+
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 566667654443 34444577789999999999998654433 4666666665544 444566778889999999977
Q ss_pred EEecC-CCe--EEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCCc--EEEEcCCCCceEEEEcCCCCcccC
Q 016187 165 LAGSE-DST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDAT--LRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 165 ~~~s~-d~~--i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+..+. .+. +..+.......... ...........++++++.++ +...++. |.+.++..+..... . .....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~---~~~~~ 172 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-T---WEGSQ 172 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-C---CSSSE
T ss_pred eEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceee-e---ccccc
Confidence 66543 333 23333333322222 22333344556777766554 4444554 44555554433221 1 12334
Q ss_pred eEEEEEcCCCCEEEEEeCCC-c--EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCc
Q 016187 239 LTCLTISADSTLALSGSKDG-S--VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM---DQKLIIWDLQHSLP 312 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~dg-~--i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~---dg~i~iwd~~~~~~ 312 (394)
.....++|+++.++..+.++ . |.+.+...+.. .+..+........|+|+|++|+..+. ...|.++++.....
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred ccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 56678999999887765443 3 44455555443 33345566677899999998875543 34688899987766
Q ss_pred ceeccCCCCEEEEEEeC
Q 016187 313 RSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~ 329 (394)
.........+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 55555555677788887
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=7.2e-09 Score=95.17 Aligned_cols=318 Identities=11% Similarity=0.089 Sum_probs=174.2
Q ss_pred EEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCc---ccCEEEEEEcCCCCEEEEEe---------CCCcEEEEeCCC
Q 016187 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGG---------LDGLVQIWDPSS 138 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h---~~~V~~v~~s~~g~~l~t~s---------~d~~i~vwd~~~ 138 (394)
.|.+++ .++. -..++.+.+|++.+++....+..+ ...+....|||||++++.+. ..+.+.++|+.+
T Consensus 23 ~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 23 KWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred EEeCCC-cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 466643 3333 345678999999877654434332 23577889999999987664 346788999988
Q ss_pred CceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcC-----------------eEEEE
Q 016187 139 GNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSS-----------------VTCGD 198 (394)
Q Consensus 139 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~-----------------v~~~~ 198 (394)
+...... ......+....|+|+|+.++-.. ++.|++.+...+..++... +.... -..+.
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence 8754322 22334566689999999887654 5788888876655443322 11111 14567
Q ss_pred ECCCCCeEEEEeCC-CcEEEE---------------------------------cCCCCceEEEEcCC---CCcccCeEE
Q 016187 199 FTPDGKTICTGSDD-ATLRVW---------------------------------NPKSGENIHVIRGH---PYHTEGLTC 241 (394)
Q Consensus 199 ~~~~~~~l~s~~~d-g~i~vw---------------------------------d~~~~~~~~~~~~~---~~~~~~i~~ 241 (394)
|||||++||....| ..|..+ |+.++......... ......+..
T Consensus 180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~ 259 (465)
T d1xfda1 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (465)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence 99999999876532 333333 22222111000000 001112567
Q ss_pred EEEcCCCCEEEEEeC-C---CcEEEEECCCCcEEEEeccC-CCCE----EEEEECCCCCeEE---EEeCCC--cEEEEeC
Q 016187 242 LTISADSTLALSGSK-D---GSVHMVNITTGKVVSSLVSH-TDSI----ECIGFSRSSPWAA---TGSMDQ--KLIIWDL 307 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~-d---g~i~i~d~~~~~~~~~~~~h-~~~i----~~v~~~~~~~~l~---s~s~dg--~i~iwd~ 307 (394)
+.|+|++++++.... + ..|.++|..++++...+... ...| ....|++++..++ ....+| .+....+
T Consensus 260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~ 339 (465)
T d1xfda1 260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITV 339 (465)
T ss_dssp EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEE
T ss_pred eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEe
Confidence 889999886665432 2 25788999998765443322 2222 2356889987432 222333 2333322
Q ss_pred C-------CCCcceeccCCCCEEEE-EEeCCCCEEE-EEeCCC--e--EEEEECCCCeEEEEee---cccCceeEEEEcc
Q 016187 308 Q-------HSLPRSTCDHEDGVTCL-MWLGTSKYVV-TGCVDG--K--VRVWDSLSGDCVRTFS---GHRDAIQAISVSA 371 (394)
Q Consensus 308 ~-------~~~~~~~~~~~~~v~~~-~~~~~~~~l~-sg~~dg--~--i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~ 371 (394)
. ....+......-.|..+ .|..+++.|. ++..++ . ++--++..+...+.++ ........+.|||
T Consensus 340 ~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~ 419 (465)
T d1xfda1 340 SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (465)
T ss_dssp ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred ccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECC
Confidence 1 11112222222335554 5788776654 444332 2 3333443332222222 2344567899999
Q ss_pred CCCEEEEEeC---CCcEEEEecc
Q 016187 372 HQDFLVSVSL---DGTARVFEIA 391 (394)
Q Consensus 372 ~~~~l~s~s~---dg~i~iw~~~ 391 (394)
++++++-.+. --.+.+++..
T Consensus 420 ~~~y~v~~~s~~~~P~~~~~~~~ 442 (465)
T d1xfda1 420 SMDFFLLKCEGPGVPMVTVHNTT 442 (465)
T ss_dssp TSSEEEEECCSSSSCCEEEEETT
T ss_pred CCCEEEEEeecCCCCeEEEEECC
Confidence 9999884332 2345555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=8.6e-09 Score=91.67 Aligned_cols=244 Identities=7% Similarity=0.031 Sum_probs=142.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEE-ecCCCCEEEEEEcCCCCE--EEEec-CCCeEEEEeCCc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTL-EGPGGGVEWVSWHPRGHI--VLAGS-EDSTVWMWNADR 180 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~--l~~~s-~d~~i~iw~~~~ 180 (394)
....+.-|+|+|++++|+++.. +.+..|.+.. +...... .........+.++++++. ++++. ..+++..+....
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 3445667999999999987765 4577775543 2222221 112233445677888773 33332 245555544321
Q ss_pred c-------------ce---ee-eecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEE---EcCCCCcccCe
Q 016187 181 A-------------AY---LN-MFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHV---IRGHPYHTEGL 239 (394)
Q Consensus 181 ~-------------~~---~~-~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~---~~~~~~~~~~i 239 (394)
. .. .. .-......+.++.|+|+|++++++.. ...|.+|+......+.. .... ....+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gP 195 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-CCCCce
Confidence 0 00 00 00112234678999999998887764 45688887543322221 1111 134578
Q ss_pred EEEEEcCCCCEEEE-EeCCCcEEEEECCCCcE--EEEec-----------------cCCCCEEEEEECCCCCeEEEEeC-
Q 016187 240 TCLTISADSTLALS-GSKDGSVHMVNITTGKV--VSSLV-----------------SHTDSIECIGFSRSSPWAATGSM- 298 (394)
Q Consensus 240 ~~~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~--~~~~~-----------------~h~~~i~~v~~~~~~~~l~s~s~- 298 (394)
+.++++|+++++++ ...+++|.+|++..++. +.... .+......+.++|++++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 89999999998755 45678999999876532 22111 01123567899999999887643
Q ss_pred -----CCcEEEEeCCCCCcce--e-----ccCCCCEEEEEEeC-CCCEEEEE-eCCCeEEEEECCCC
Q 016187 299 -----DQKLIIWDLQHSLPRS--T-----CDHEDGVTCLMWLG-TSKYVVTG-CVDGKVRVWDSLSG 351 (394)
Q Consensus 299 -----dg~i~iwd~~~~~~~~--~-----~~~~~~v~~~~~~~-~~~~l~sg-~~dg~i~iwd~~~~ 351 (394)
...|..|++....... . .........++++| ++++|+++ ..++.|.+|+....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1237777765421111 1 11223356688888 78877666 56799999976543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.18 E-value=1.8e-07 Score=81.20 Aligned_cols=239 Identities=13% Similarity=0.142 Sum_probs=158.5
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC----CCcEEEEcCCCCc
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD----DATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~ 224 (394)
...+..++|.++++++++-...+.|+.|+..++.....+.........+++.++|+++++... .+.+...+.....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 344577899999998888888899999998877655555455567789999999988776543 2345555655544
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE-EEEe
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA-ATGS 297 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s~s 297 (394)
....... .........+.+.++|+++++.... +.+..++...+. +..+...-...+.++|+|+++.| ++-+
T Consensus 119 ~~~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 119 LQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp CEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred eeeeccC-CCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecc
Confidence 3333322 1123457778999999987765332 335556554333 33332233456789999999865 5556
Q ss_pred CCCcEEEEeCCCCCcc-e--------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee------cccC
Q 016187 298 MDQKLIIWDLQHSLPR-S--------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS------GHRD 362 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~-~--------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~------~h~~ 362 (394)
..++|..|++...... . ..........+++.++|++.++....+.|.+||. .|+.+.++. ++..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 6789999987543111 0 0111223567889999998888888999999995 788888775 3444
Q ss_pred ceeEEEEccCCCEEEEEeC----CCcEEEEec
Q 016187 363 AIQAISVSAHQDFLVSVSL----DGTARVFEI 390 (394)
Q Consensus 363 ~v~~l~~~~~~~~l~s~s~----dg~i~iw~~ 390 (394)
.+++++|.++...++.... .+.-.+|.+
T Consensus 276 ~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~ 307 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTV 307 (319)
T ss_dssp BCCEEEECTTSCEEEEEEECGGGTCCEEEEEE
T ss_pred eeeeEEEeCCCCEEEEEcCCCCcCCceeEEEE
Confidence 6789999988776665443 233445544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.10 E-value=5.2e-07 Score=78.25 Aligned_cols=226 Identities=9% Similarity=0.120 Sum_probs=146.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC----CeEEEEeCCcccee
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYL 184 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----~~i~iw~~~~~~~~ 184 (394)
.+..++|.++|++.++-...+.|..|+..+++....+.........++++++++++++...+ +.+...+.......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 45689999999988887788999999988777666555556678899999999987775432 34555555544433
Q ss_pred eeecc--cCcCeEEEEECCCCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEe
Q 016187 185 NMFSG--HGSSVTCGDFTPDGKTICTGSD------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGS 255 (394)
Q Consensus 185 ~~~~~--h~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~ 255 (394)
..... -...+..+++.++|++.++... -+.+..++..... +..+.. .....+.++++|+++.+ ++-+
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~---~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ---NISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE---EESSEEEEEECTTSSEEEEEEG
T ss_pred eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEee---ccceeeeeeeccccceEEEecc
Confidence 32221 1234678899999987666432 2335555554332 222211 12235678999999854 5667
Q ss_pred CCCcEEEEECCCC-cEE---E----EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee------ccCCCC
Q 016187 256 KDGSVHMVNITTG-KVV---S----SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST------CDHEDG 321 (394)
Q Consensus 256 ~dg~i~i~d~~~~-~~~---~----~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------~~~~~~ 321 (394)
..+.|..|++... ... . ...........+++.+++.+.++....+.|.+||......... ..+...
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~ 276 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLR 276 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCB
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCce
Confidence 7889999987642 111 1 1111223466799999999888888899999999754322211 123345
Q ss_pred EEEEEEeCCCCEEEEEe
Q 016187 322 VTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~ 338 (394)
++|++|.+....+++.+
T Consensus 277 ~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 277 STHPQFIPGTNQLIICS 293 (319)
T ss_dssp CCEEEECTTSCEEEEEE
T ss_pred eeeEEEeCCCCEEEEEc
Confidence 78999988877666544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3.6e-07 Score=76.83 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=134.5
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCC--eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQI 133 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~--~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~i~v 133 (394)
...+..+.+.+..-+|||++..+..+....+ .+.+.+...+.. ..+..+.+......|+|+|+.++..+. .+...+
T Consensus 31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 109 (269)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence 3444555777889999997665544433333 344455554443 445557788899999999998886653 333222
Q ss_pred --EeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 134 --WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 134 --wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+....... ..............+++++..+ ++...++ .+...+........ ...+........|+|+++.++.
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 110 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEE
T ss_pred eecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEE
Confidence 33222222 2222333444556677777644 4444455 45555665554332 3344556667789999998887
Q ss_pred EeCCC-c--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEE
Q 016187 209 GSDDA-T--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIE 282 (394)
Q Consensus 209 ~~~dg-~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~ 282 (394)
.+.++ . +.+.+...+.. ..+. .........|+|||+.|+..+. ...|.++++..+.. ..+......+.
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~ 261 (269)
T d2hqsa1 188 VSSNGGQQHIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVK 261 (269)
T ss_dssp EEECSSCEEEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEE
T ss_pred EeecCCceeeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEE
Confidence 65544 3 44445554432 2222 2234566789999998875443 34788999977654 45666667778
Q ss_pred EEEECCC
Q 016187 283 CIGFSRS 289 (394)
Q Consensus 283 ~v~~~~~ 289 (394)
..+|+|-
T Consensus 262 ~p~WSP~ 268 (269)
T d2hqsa1 262 FPAWSPY 268 (269)
T ss_dssp EEEECCC
T ss_pred eEEeCCC
Confidence 8889883
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=8.7e-07 Score=80.95 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=165.0
Q ss_pred cEEEEEEcCCCCcEEEEe--------cCCCeEEEEEcCCCeeeEee--cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 66 EVYSVACSPTDATLVATG--------GGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg--------~~d~~v~~w~~~~~~~~~~~--~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.+....+||++..++... +..+...++|+.+++..... ......+....|||||+.||-.. ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 455667899765554432 33567889999887754432 23344566789999999987664 67888888
Q ss_pred CCCCceEEEEe-cCCCC-----------------EEEEEEcCCCCEEEEecCC-Ce------------------------
Q 016187 136 PSSGNLKCTLE-GPGGG-----------------VEWVSWHPRGHIVLAGSED-ST------------------------ 172 (394)
Q Consensus 136 ~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~l~~~s~d-~~------------------------ 172 (394)
..++....... +..+. -..+-|+|+|+.|+....| ..
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 87765543322 22111 2467799999988875422 22
Q ss_pred ---------EEEEeCCccceeee------ecccCcCeEEEEECCCCCeEEEEeC-C---CcEEEEcCCCCceEEEEcCCC
Q 016187 173 ---------VWMWNADRAAYLNM------FSGHGSSVTCGDFTPDGKTICTGSD-D---ATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 173 ---------i~iw~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~l~s~~~-d---g~i~vwd~~~~~~~~~~~~~~ 233 (394)
+.++++..+..... .......+..+.|+|+++.++.... + ..|.++|..+++....+....
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~ 300 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence 23334332221110 0111223567889999886655322 2 257889999987655443211
Q ss_pred -Cc-ccCeEEEEEcCCCCEEE---EEeCCC--cEEEEECC------CCcEEEEeccCCCCEEEE-EECCCCCeEE-EEeC
Q 016187 234 -YH-TEGLTCLTISADSTLAL---SGSKDG--SVHMVNIT------TGKVVSSLVSHTDSIECI-GFSRSSPWAA-TGSM 298 (394)
Q Consensus 234 -~~-~~~i~~~~~~~~~~~l~---~g~~dg--~i~i~d~~------~~~~~~~~~~h~~~i~~v-~~~~~~~~l~-s~s~ 298 (394)
.. ...-....++|+|+.++ ..-.+| .+....+. .++.+..+....-.|..+ ++++.+..+. ++..
T Consensus 301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence 00 00112346888887432 222333 34433321 233333444444455554 5787776554 4433
Q ss_pred CC--cEEEEe--CCCCCcce--e--ccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeec
Q 016187 299 DQ--KLIIWD--LQHSLPRS--T--CDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 299 dg--~i~iwd--~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~ 359 (394)
++ .-.||. +....... . .........+.|+|++++++..+.. -.+.+++..+++.+..|+.
T Consensus 381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence 32 223444 33222111 1 1233456788999999998865443 4588899889998888864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.75 E-value=2.7e-05 Score=66.20 Aligned_cols=222 Identities=15% Similarity=0.099 Sum_probs=146.2
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..|++.++.+..+=-..++|.-|+..+++... +. ....+.++++.++|.++++ +.+ -+.++|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 455777666666655566888889988876532 22 2456889999999877765 444 5889999998865433221
Q ss_pred ----CCCEEEEEEcCCCCEEEEecC----CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EEEeCCCcEEEEc
Q 016187 149 ----GGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219 (394)
Q Consensus 149 ----~~~v~~~~~~~~~~~l~~~s~----d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd 219 (394)
...++.+...|+|++.++... .+.-.+|....++....... -.....++|+++++.+ ++-+..+.|..++
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence 124778889999987766432 22345555555544333322 2345688999999865 4556678888887
Q ss_pred CCCC------ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC-CCCCe
Q 016187 220 PKSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS-RSSPW 292 (394)
Q Consensus 220 ~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~-~~~~~ 292 (394)
+... +...... ..........+++..+|++.++.-..+.|..||. .++.+..+......+++++|- ++...
T Consensus 177 ~d~~~~~~~~~~~~~~~-~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFID-STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp BCTTTCCBSSCCEEEEE-CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred ecccccccccceEEEec-cCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCE
Confidence 5321 1111111 1112234677889999999888888899999995 688888887666789999995 56554
Q ss_pred E-EEEe
Q 016187 293 A-ATGS 297 (394)
Q Consensus 293 l-~s~s 297 (394)
| +|..
T Consensus 255 LyvTta 260 (295)
T d2ghsa1 255 LLVTSA 260 (295)
T ss_dssp EEEEEB
T ss_pred EEEEEC
Confidence 4 4433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=7.4e-05 Score=63.40 Aligned_cols=217 Identities=9% Similarity=0.025 Sum_probs=138.6
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-
Q 016187 112 SLAFSMDG-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG- 189 (394)
Q Consensus 112 ~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~- 189 (394)
+..|++.. .++.+=-..+.|..||..+++.. .+. ....+.++++.+++.+++++ . ..+..+|..+++.......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeee
Confidence 45577644 44444446688999998887654 222 23467889998888777654 3 4688999888765433221
Q ss_pred ---cCcCeEEEEECCCCCeEEEEeC----CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEE
Q 016187 190 ---HGSSVTCGDFTPDGKTICTGSD----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVH 261 (394)
Q Consensus 190 ---h~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~ 261 (394)
....+..+.+.|+|++.++... .+.-.+|.+..++....... ....+.+.++++++.+ ++-+..+.|.
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~----~~~~Ng~~~s~d~~~l~~~dt~~~~I~ 173 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD----ISIPNSICFSPDGTTGYFVDTKVNRLM 173 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE----ESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec----cCCcceeeecCCCceEEEeecccceee
Confidence 1235778899999987666532 23345565555554333322 2235678999999855 5556778898
Q ss_pred EEECCCC--------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe-CCCC
Q 016187 262 MVNITTG--------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL-GTSK 332 (394)
Q Consensus 262 i~d~~~~--------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~ 332 (394)
.+++... .....+.........+++..++.+.++.-..+.|..||...............+++++|. ++.+
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCC
Confidence 8886421 122233334456788999999998877777889999997654433332233568999996 5655
Q ss_pred EEEE
Q 016187 333 YVVT 336 (394)
Q Consensus 333 ~l~s 336 (394)
.|+.
T Consensus 254 ~Lyv 257 (295)
T d2ghsa1 254 RLLV 257 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.56 E-value=8.1e-06 Score=68.50 Aligned_cols=230 Identities=10% Similarity=0.080 Sum_probs=122.7
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC----C--CeEEEEeCCccceee
Q 016187 114 AFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----D--STVWMWNADRAAYLN 185 (394)
Q Consensus 114 ~~s~~--g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----d--~~i~iw~~~~~~~~~ 185 (394)
..||| |+++|-.+ ++.|.+.|+.+++.. .+....+.....+|+|+|+.|+.... + ..|++++..+++..+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 98887554 456888899988764 45556677888999999998875432 2 247777777665443
Q ss_pred eecc------cCcCeEEEEECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 186 MFSG------HGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 186 ~~~~------h~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
.... ........+|+|+|+.|+..... ..+...+...+... ... ..........+.+..++.
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~ 156 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLN-----LGPATHILFADGRRVIGR 156 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECC-----SCSCSEEEEETTEEEEEE
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE-Eec-----CCccceeeecCCCeEEEe
Confidence 2211 12234567899999988865332 22344444333221 111 111112223333333332
Q ss_pred EeCCC-----------cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCcceeccCCC
Q 016187 254 GSKDG-----------SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ--KLIIWDLQHSLPRSTCDHED 320 (394)
Q Consensus 254 g~~dg-----------~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~ 320 (394)
..... ............. .............++++. ++.....++ .|.++|+.....+....+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~- 233 (281)
T d1k32a2 157 NTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFT- 233 (281)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCC-
T ss_pred eccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCC-
Confidence 22111 1111221122222 122222333344445442 222233333 4667788766554433322
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
......|+|+++.|+- ..++.|+++|+.+++..+
T Consensus 234 ~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 234 DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SSCEEEEEESSSCEEE-EETTEEEEECTTTCCEEE
T ss_pred CcccccCcCCCCEEEE-EeCCEEEEEECCCCCEEE
Confidence 2223468999998875 457899999998877543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.43 E-value=4.3e-05 Score=63.84 Aligned_cols=229 Identities=11% Similarity=0.125 Sum_probs=119.0
Q ss_pred EcCC--CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCceEE
Q 016187 72 CSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG-----LVQIWDPSSGNLKC 143 (394)
Q Consensus 72 ~~p~--~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~-----~i~vwd~~~~~~~~ 143 (394)
.+|+ +.+++.+. ++.+++.++..++.. .|..+...+...+|||||++||-... ++ .|.+++..+++...
T Consensus 6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 6 LNPDIHGDRIIFVC--CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred cCCCCCCCEEEEEe--CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 4565 55554443 356777898887754 56667778899999999998875432 22 37777877776543
Q ss_pred EEe------cCCCCEEEEEEcCCCCEEEEecCC------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 144 TLE------GPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 144 ~~~------~~~~~v~~~~~~~~~~~l~~~s~d------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
... ..........|+|+++.++..... ..+...+...+...... ........+.+.+..++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeecc
Confidence 211 112245678899999988764332 23444454444332221 122222223333333333222
Q ss_pred CCc-----------EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeccCC
Q 016187 212 DAT-----------LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 212 dg~-----------i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~h~ 278 (394)
... ..+............. .........++++. .+.....+ ..|.++|+.+++.. .+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~ 233 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVD----MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT 233 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEEC----CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC
T ss_pred ccceeeeeccCCcceeeeeccccceeeccC----Cccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC
Confidence 111 1111111111111111 11223334444443 33333333 35777888766533 333222
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS 314 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 314 (394)
......|+|+++.|+.. .++.|.++|+.+.....
T Consensus 234 -~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 234 -DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp -SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred -CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 22234689999987764 46789999987765443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.21 E-value=0.00074 Score=62.60 Aligned_cols=260 Identities=12% Similarity=0.103 Sum_probs=142.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCC----CCEEEEEEcCCCCEEEEec-----CCCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPG----GGVEWVSWHPRGHIVLAGS-----EDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s-----~d~~i~iw~~~~~~~~~~~~~ 189 (394)
+..++.++.|+.+.-.|..+|+......... ..++..-.-..+.+++.++ ..+.|+-+|..+++.+-.+..
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 3467778899999999999998875543211 1111100111233333332 367899999998876543221
Q ss_pred c-------------------------------------CcCe-EEEEECCCCCeEEEEeC----------------CCcE
Q 016187 190 H-------------------------------------GSSV-TCGDFTPDGKTICTGSD----------------DATL 215 (394)
Q Consensus 190 h-------------------------------------~~~v-~~~~~~~~~~~l~s~~~----------------dg~i 215 (394)
. ...+ ...++.+....+..+.. ..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 1 0111 12355566665555443 3456
Q ss_pred EEEcCCCCceEEEEcCCC--Cc----ccCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEeccCC--------
Q 016187 216 RVWNPKSGENIHVIRGHP--YH----TEGLTCLTISADST---LALSGSKDGSVHMVNITTGKVVSSLVSHT-------- 278 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~--~~----~~~i~~~~~~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------- 278 (394)
.-.|.++++.+-.....+ .. ........+..+++ .++.++.+|.+.++|..+|+.+.......
T Consensus 275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~ 354 (571)
T d2ad6a1 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV 354 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence 777888888766554321 11 01112222233443 56778899999999999998774321100
Q ss_pred -----CCE--------------------------EEEEECCCCCeEEEEeCC----------------------------
Q 016187 279 -----DSI--------------------------ECIGFSRSSPWAATGSMD---------------------------- 299 (394)
Q Consensus 279 -----~~i--------------------------~~v~~~~~~~~l~s~s~d---------------------------- 299 (394)
.++ ...+++|...+++....+
T Consensus 355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (571)
T d2ad6a1 355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence 000 014566666655544333
Q ss_pred ---------CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc-eeEEEE
Q 016187 300 ---------QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA-IQAISV 369 (394)
Q Consensus 300 ---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~ 369 (394)
|.|.-+|+.+..............+-.....+.++++|+.||.++.+|.++|+.+-++.--... -.-+.|
T Consensus 435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty 514 (571)
T d2ad6a1 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY 514 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred cCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEE
Confidence 2344455554443332222211111111224668888999999999999999999887632211 122556
Q ss_pred ccCCC-EEEE
Q 016187 370 SAHQD-FLVS 378 (394)
Q Consensus 370 ~~~~~-~l~s 378 (394)
..||+ ||+.
T Consensus 515 ~~dGkqYi~v 524 (571)
T d2ad6a1 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 66775 5544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=0.0012 Score=54.62 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=136.8
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSS 138 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~~ 138 (394)
+..+...+.+|+|.+.+.++..+=...+.|+.-++........+..-...+.++++..-+..|. +-...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 3334456788999987777777767788888888876655554544446789999987666665 545677999999875
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEec-C--CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCc
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-E--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT 214 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~ 214 (394)
......+......+..++..|...+++-.. . ...|..-++............-.....+++.+.++.|.-+ ...+.
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~ 190 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence 544333333345688999999776555332 2 2234444555443333333333466789998877777544 56788
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
|...++........+.+. .....+++. ++.++.+-...+.|...|..+++.+..+.
T Consensus 191 I~~~~~~g~~~~~v~~~~----~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 191 AECLNPAQPGRRKVLEGL----QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp EEEEETTEEEEEEEEECC----CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCeEEEECCC----CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 998888654433333332 123466665 45566666678899999998888776654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.12 E-value=0.0012 Score=57.60 Aligned_cols=267 Identities=12% Similarity=0.091 Sum_probs=139.7
Q ss_pred cCCCCcEEEEecCCC-----------eEEEEEcCCCeeeEee---cCcccCEEEEEEcCCCCEEEEEeCC-CcEEEEeCC
Q 016187 73 SPTDATLVATGGGDD-----------KGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPS 137 (394)
Q Consensus 73 ~p~~~~~lasg~~d~-----------~v~~w~~~~~~~~~~~---~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vwd~~ 137 (394)
-+.++++++-||.+. .+.+||..++.+.... ..|.....+.++.++|.+++.|+.+ ..+.+||..
T Consensus 27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~ 106 (387)
T d1k3ia3 27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS 106 (387)
T ss_dssp ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence 344566666666321 3678999988765321 2233334567889999999988765 589999988
Q ss_pred CCceEEEEecC-CCCEEEEEEcCCCCEEEEecCC------CeEEEEeCCccceeeee---------cccCc-----CeEE
Q 016187 138 SGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNMF---------SGHGS-----SVTC 196 (394)
Q Consensus 138 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d------~~i~iw~~~~~~~~~~~---------~~h~~-----~v~~ 196 (394)
+......-..+ ...-..++..+++++++.|+.. ..+.+||..+.+-...- ..+.. .-..
T Consensus 107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (387)
T d1k3ia3 107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186 (387)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence 87664321111 1122346677889988888753 36889998765321110 00100 0011
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc---C---CCCcccCeEEEEEcCCCCEEEEEeCCC--------cEEE
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR---G---HPYHTEGLTCLTISADSTLALSGSKDG--------SVHM 262 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~---~~~~~~~i~~~~~~~~~~~l~~g~~dg--------~i~i 262 (394)
+...++|+.+..+...+.+.+++..+..-...-. . .......-..+....++++++.|+... ...+
T Consensus 187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~ 266 (387)
T d1k3ia3 187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI 266 (387)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred EEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeec
Confidence 2234567777777777788888877654322110 0 000111122223334667777765321 2333
Q ss_pred EECCC---Cc-EEEEecc--CCCCEEEEEECCCCCeEEEEeCCC-----------cEEEEeCCCCCcce--eccCCC-CE
Q 016187 263 VNITT---GK-VVSSLVS--HTDSIECIGFSRSSPWAATGSMDQ-----------KLIIWDLQHSLPRS--TCDHED-GV 322 (394)
Q Consensus 263 ~d~~~---~~-~~~~~~~--h~~~i~~v~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~--~~~~~~-~v 322 (394)
.++.. .. ....... +...-.+....+++++++.|+.+. ++.+||..+..=.. ...... .-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~H 346 (387)
T d1k3ia3 267 ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH 346 (387)
T ss_dssp EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred ccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccce
Confidence 33321 11 1111110 111122455567888888887431 46788875431100 001000 01
Q ss_pred EEEEEeCCCCEEEEEeC
Q 016187 323 TCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 323 ~~~~~~~~~~~l~sg~~ 339 (394)
......++++.++.|+.
T Consensus 347 s~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 347 SISLLLPDGRVFNGGGG 363 (387)
T ss_dssp EEEEECTTSCEEEEECC
T ss_pred EEEEECCCCEEEEEeCC
Confidence 22334688888888873
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.11 E-value=0.0021 Score=55.89 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=135.6
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecC----------cc-----------------------------cCE--EEEEEc
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQG----------HK-----------------------------DSV--SSLAFS 116 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~----------h~-----------------------------~~V--~~v~~s 116 (394)
..|.|||..|.++|+-+.+++.+..+.- .+ +-. -.+++.
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T 93 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 93 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence 3577888889999888887765544310 00 000 144454
Q ss_pred C---CCCEEEEEe-CCCcEEEEeCCCCceEEEEecC-CCCEEEEEEcCC--CCEEEEecCCC------------------
Q 016187 117 M---DGQLLASGG-LDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPR--GHIVLAGSEDS------------------ 171 (394)
Q Consensus 117 ~---~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~s~d~------------------ 171 (394)
. ||++|++.. .+..|.+-|+.+.+....+..+ ...+..++..++ ..+++..+.+.
T Consensus 94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence 3 788887665 6788999999999887655543 345666666554 44777766532
Q ss_pred eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC---------------cEEEE------------------
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------------TLRVW------------------ 218 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vw------------------ 218 (394)
.+..+|..+.+....+.-. .....++++++|+++++.+.+. .+.++
T Consensus 174 ~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 2556788777655444322 2345678999999998876432 12222
Q ss_pred -----cCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------EEEEeccC
Q 016187 219 -----NPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGK------------VVSSLVSH 277 (394)
Q Consensus 219 -----d~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~------------~~~~~~~h 277 (394)
|.++. ..+..+.. ......+.++|||+++++++ .+.++.++|+++-. ...... .
T Consensus 253 gV~VVD~~~~~~~~v~~yIPV----pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-l 327 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 327 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-C
T ss_pred CceeecccccCCcceeEEEec----CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-c
Confidence 22211 00111110 11233478999999887665 68899999986421 111111 1
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
.-....-+|+..+.-..|.-.|.+|.-|++.
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecc
Confidence 1223345788887655666789999999974
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.10 E-value=0.0039 Score=57.89 Aligned_cols=259 Identities=16% Similarity=0.155 Sum_probs=142.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCE-EEEEEcC--CCCEEEEecC------CCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV-EWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~ 189 (394)
+.+++.++.|+.|.-.|..+|+....+....... ..+.-.| -+..++.+.. .|.|+-+|..+++.+-.+..
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 3478889999999999999999887664211000 0000011 1234555543 48899999998876643211
Q ss_pred c-------------------------------------CcCe-EEEEECCCCCeEEEEeC----------------CCcE
Q 016187 190 H-------------------------------------GSSV-TCGDFTPDGKTICTGSD----------------DATL 215 (394)
Q Consensus 190 h-------------------------------------~~~v-~~~~~~~~~~~l~s~~~----------------dg~i 215 (394)
. ...+ ...++.+...++..+.. ..+|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence 0 0111 12345565555555432 2347
Q ss_pred EEEcCCCCceEEEEcCCCC--c----ccCeEEEE-EcCCC---CEEEEEeCCCcEEEEECCCCcEEEEeccC--C-----
Q 016187 216 RVWNPKSGENIHVIRGHPY--H----TEGLTCLT-ISADS---TLALSGSKDGSVHMVNITTGKVVSSLVSH--T----- 278 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~--~----~~~i~~~~-~~~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--~----- 278 (394)
.-.|+.+++..-.++..+. . ......+. ...++ +.++....+|.+.++|..+|+++...... .
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence 7788888887655443211 0 01122222 22344 36777889999999999999887542210 0
Q ss_pred ------CCE--------------------------EEEEECCCCCeEEEEeCC---------------------------
Q 016187 279 ------DSI--------------------------ECIGFSRSSPWAATGSMD--------------------------- 299 (394)
Q Consensus 279 ------~~i--------------------------~~v~~~~~~~~l~s~s~d--------------------------- 299 (394)
.++ ..++++|...++.....+
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence 000 123455555444433211
Q ss_pred ------------CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eE
Q 016187 300 ------------QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QA 366 (394)
Q Consensus 300 ------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~ 366 (394)
|.|.-||+.+........+......-..+..+.+++.|+.||.++.+|..+|+.+-++.--.... .-
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P 520 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP 520 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC
Confidence 34555665555443332222222111123356788899999999999999999998886322111 22
Q ss_pred EEEccCCC-EEE
Q 016187 367 ISVSAHQD-FLV 377 (394)
Q Consensus 367 l~~~~~~~-~l~ 377 (394)
+.|..+|+ ||+
T Consensus 521 ~tY~~dGkQYva 532 (596)
T d1w6sa_ 521 MTYTHKGTQYVA 532 (596)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 44666775 444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.09 E-value=0.0025 Score=55.48 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCceEE--EEe-cCCCCEEEEEEcCCCCEEEEecCC-CeEE
Q 016187 110 VSSLAFSMDGQLLASGGLDG-----------LVQIWDPSSGNLKC--TLE-GPGGGVEWVSWHPRGHIVLAGSED-STVW 174 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~-----------~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~s~d-~~i~ 174 (394)
+.......+|+.++.|+.+. .+.+||+.++.... ... .+........+.+++++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34444556788777777431 36789999886532 222 222233456788999999988765 5899
Q ss_pred EEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCC------------
Q 016187 175 MWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPY------------ 234 (394)
Q Consensus 175 iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~------------ 234 (394)
+||..+..-... +.... .-...+..++|+.++.|+.+ ..+.+||+.+++- ..+.....
T Consensus 102 ~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCTTGGG
T ss_pred EecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCce-eecCCCccccccccccccee
Confidence 999876543322 11111 12245677899999888753 3689999887642 22221100
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--c----CCC--CEEEEEE-CCCCCeEEEEeCCC-----
Q 016187 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--S----HTD--SIECIGF-SRSSPWAATGSMDQ----- 300 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~----h~~--~i~~v~~-~~~~~~l~s~s~dg----- 300 (394)
....-..+...++++.++.+...+.+.+++..+........ . +.. .-.++.+ ..+++.++.|+...
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 00011123334567777777777777777777664332210 0 000 1112222 23455555554321
Q ss_pred ---cEEEEeCCCCCcc---e-e---ccCCCCEEEEEEeCCCCEEEEEeCCC-----------eEEEEECCCCeE--EEEe
Q 016187 301 ---KLIIWDLQHSLPR---S-T---CDHEDGVTCLMWLGTSKYVVTGCVDG-----------KVRVWDSLSGDC--VRTF 357 (394)
Q Consensus 301 ---~i~iwd~~~~~~~---~-~---~~~~~~v~~~~~~~~~~~l~sg~~dg-----------~i~iwd~~~~~~--~~~~ 357 (394)
...+.++...... . . ......-.+....++++.++.|+.++ .+.+||..+.+- +..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence 2233332211100 0 0 01111122445568889988887531 478898766542 2222
Q ss_pred ecccCceeEEEEccCCCEEEEEeC
Q 016187 358 SGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 358 ~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
..-+..=....+.+|++.|+.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEEECCCCEEEEEeCC
Confidence 111111112345789999999884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.08 E-value=0.003 Score=58.23 Aligned_cols=295 Identities=15% Similarity=0.193 Sum_probs=156.4
Q ss_pred ecCCCeEEEEEcCCCeeeEeecCc-------c---cCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC
Q 016187 83 GGGDDKGFFWRINQGDWASEIQGH-------K---DSV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (394)
Q Consensus 83 g~~d~~v~~w~~~~~~~~~~~~~h-------~---~~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~ 151 (394)
++.++.+.-.|.++|+.+-++... . ..+ ..++. .+..++.+..++.|.-.|..+|+.+.........
T Consensus 72 ~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~ 149 (560)
T d1kv9a2 72 SMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA 149 (560)
T ss_dssp EEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTT
T ss_pred ECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCccCcc
Confidence 345566666677777665443211 0 000 11111 1456778888999999999999987665432110
Q ss_pred -EEEEEEcC--CCCEEEEecC------CCeEEEEeCCccceeeeecc------------------------------cCc
Q 016187 152 -VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSG------------------------------HGS 192 (394)
Q Consensus 152 -v~~~~~~~--~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~------------------------------h~~ 192 (394)
...+.-.| ....++.+.. .|.|.-+|.++++.+-.+.. ...
T Consensus 150 ~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 229 (560)
T d1kv9a2 150 KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGG 229 (560)
T ss_dssp SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEEC
T ss_pred cceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCC
Confidence 00000011 1223333332 36788888888876543321 011
Q ss_pred Ce-EEEEECCCCCeEEEEeC-------------------CCcEEEEcCCCCceEEEEcCCC--Cc----ccCeEEEEEcC
Q 016187 193 SV-TCGDFTPDGKTICTGSD-------------------DATLRVWNPKSGENIHVIRGHP--YH----TEGLTCLTISA 246 (394)
Q Consensus 193 ~v-~~~~~~~~~~~l~s~~~-------------------dg~i~vwd~~~~~~~~~~~~~~--~~----~~~i~~~~~~~ 246 (394)
.+ ...++.+...++..+.. ..+|.-.|+++++..-.++... .. .....-+.+..
T Consensus 230 ~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~ 309 (560)
T d1kv9a2 230 TVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI 309 (560)
T ss_dssp CCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred CcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeec
Confidence 11 12455666665544321 2356667888888665443221 10 01112222223
Q ss_pred CC---CEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCE-----------------------------------EEEEEC
Q 016187 247 DS---TLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSI-----------------------------------ECIGFS 287 (394)
Q Consensus 247 ~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i-----------------------------------~~v~~~ 287 (394)
++ ..++.+..+|.+.++|..+++++.....-. ... ...+++
T Consensus 310 ~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 389 (560)
T d1kv9a2 310 DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN 389 (560)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE
T ss_pred CCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccccccccccc
Confidence 33 366778899999999999998775432110 000 123455
Q ss_pred CCCCeEEEEeCC------------------------------------CcEEEEeCCCCCcceeccCCCCEEEEEEeCCC
Q 016187 288 RSSPWAATGSMD------------------------------------QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 288 ~~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 331 (394)
|+..+++....+ |.|.-||+.+...............-...-.+
T Consensus 390 p~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tag 469 (560)
T d1kv9a2 390 PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAG 469 (560)
T ss_dssp TTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETT
T ss_pred CCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECC
Confidence 665555543322 34555666555444333222222111223356
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-EEEEE
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-FLVSV 379 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~l~s~ 379 (394)
.++++|+.||.++.+|..+|+.+-++.-..... .-+.+..+|+ ||+..
T Consensus 470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~ 519 (560)
T d1kv9a2 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM 519 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 788899999999999999999998876322111 1245666775 55543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.92 E-value=0.0061 Score=56.31 Aligned_cols=293 Identities=14% Similarity=0.179 Sum_probs=152.6
Q ss_pred EecCCCeEEEEEcCCCeeeEeecCc-------c---cCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC-
Q 016187 82 TGGGDDKGFFWRINQGDWASEIQGH-------K---DSV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG- 149 (394)
Q Consensus 82 sg~~d~~v~~w~~~~~~~~~~~~~h-------~---~~V-~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~- 149 (394)
.++.++.|.-.|..+|+.+-.+.-. . ..+ +.+.+. +..++.++.|+.+.-.|..+|+.+.......
T Consensus 82 v~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~ 159 (573)
T d1kb0a2 82 VSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEG 159 (573)
T ss_dssp EECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred EECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccCccC
Confidence 3456677777788888766544211 0 011 122222 3356677889999989999998875543211
Q ss_pred --CCEEEEEEcC--CCCEEEEecC------CCeEEEEeCCccceeeeeccc-----------------------------
Q 016187 150 --GGVEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGH----------------------------- 190 (394)
Q Consensus 150 --~~v~~~~~~~--~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~h----------------------------- 190 (394)
..+. +.-.| -+..++.++. .|.|+-+|..+++.+-.+...
T Consensus 160 ~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 238 (573)
T d1kb0a2 160 QKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA 238 (573)
T ss_dssp CCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH
T ss_pred CcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeec
Confidence 1111 00001 1233444432 467899999888765432110
Q ss_pred --CcCe-EEEEECCCCCeEEEEeC-------------------CCcEEEEcCCCCceEEEEcCCCC------cccCeEEE
Q 016187 191 --GSSV-TCGDFTPDGKTICTGSD-------------------DATLRVWNPKSGENIHVIRGHPY------HTEGLTCL 242 (394)
Q Consensus 191 --~~~v-~~~~~~~~~~~l~s~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~------~~~~i~~~ 242 (394)
...+ ...++.+....+..+.. ...|.-.|+++++..-..+..+. ...+....
T Consensus 239 ~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~ 318 (573)
T d1kb0a2 239 GGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILA 318 (573)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEE
T ss_pred CCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccceeeec
Confidence 0111 12344555554443221 12455667777765544332110 01112222
Q ss_pred EEcCCC---CEEEEEeCCCcEEEEECCCCcEEEEeccCCCC-----------------------------------EEEE
Q 016187 243 TISADS---TLALSGSKDGSVHMVNITTGKVVSSLVSHTDS-----------------------------------IECI 284 (394)
Q Consensus 243 ~~~~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-----------------------------------i~~v 284 (394)
....++ ..++.++.+|.+..+|..+|+.+......... -..+
T Consensus 319 ~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~ 398 (573)
T d1kb0a2 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (573)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred ceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCcccccc
Confidence 222333 46677889999999999999877543211000 0123
Q ss_pred EECCCCCeEEEEeCCCc-------------------------------------------EEEEeCCCCCcceeccCCCC
Q 016187 285 GFSRSSPWAATGSMDQK-------------------------------------------LIIWDLQHSLPRSTCDHEDG 321 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~-------------------------------------------i~iwd~~~~~~~~~~~~~~~ 321 (394)
+++|+..+++....+.. +.-||+.+...........+
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p 478 (573)
T d1kb0a2 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP 478 (573)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS
T ss_pred ccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCC
Confidence 56666666655443332 33344433332222221111
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-EEE
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-FLV 377 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~l~ 377 (394)
...-...-.+.+|++|+.||.++.+|..+|+.+-++.--.... .-+.|..+|+ ||+
T Consensus 479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~ 536 (573)
T d1kb0a2 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (573)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 1111122356788899999999999999999998876322111 1145666776 444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.78 E-value=0.015 Score=53.77 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=57.3
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce-eEEEEccCCC-EEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI-QAISVSAHQD-FLV 377 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~-~l~ 377 (394)
|.|.-+|+.+...........++..-..+..+.+|++|+.||.++.+|..||+.+-+++--.... .-+.|..+|+ ||+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 34555666555444333222222211123456788899999999999999999998887322111 2256777885 555
Q ss_pred EEe---------------------CCCcEEEEeccCC
Q 016187 378 SVS---------------------LDGTARVFEIADF 393 (394)
Q Consensus 378 s~s---------------------~dg~i~iw~~~~~ 393 (394)
..+ ..+.|.+|.|.+|
T Consensus 546 i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~~ 582 (582)
T d1flga_ 546 VTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSW 582 (582)
T ss_dssp EEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCCC
T ss_pred EEeCCCCccccccccccccccccCCCCEEEEEeCCCC
Confidence 332 1457888888765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.76 E-value=0.0051 Score=53.38 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=135.6
Q ss_pred CCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcC--CCCEEEEEeCCC------------------cEEE
Q 016187 75 TDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSM--DGQLLASGGLDG------------------LVQI 133 (394)
Q Consensus 75 ~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~--~g~~l~t~s~d~------------------~i~v 133 (394)
++..++++-..+.+|-+-|+.+.+....+.- ....+..+...+ .-.|++.++.+. .+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 3556788888999999999999987664432 234566676655 445777766532 3567
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC---------------eEEEEeC--------------------
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---------------TVWMWNA-------------------- 178 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~---------------~i~iw~~-------------------- 178 (394)
.|..+++....+.-. +....+.++++|+++++.+.+. .+.+++.
T Consensus 178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 888888876655433 2455689999999887765331 1233332
Q ss_pred ---Ccc---ceeeeecccCcCeEEEEECCCCCeEEE-EeCCCcEEEEcCCCCceE--------EEEcCCCCcccCeEEEE
Q 016187 179 ---DRA---AYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENI--------HVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 179 ---~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~i~~~~ 243 (394)
... ..++.+.- ......+.++|||++++. +..+.++.|+|++.-..+ ..+.+.+...-+....+
T Consensus 257 VD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~ 335 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 335 (459)
T ss_dssp EECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred ecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence 110 11111111 122345789999999865 556899999998632110 01111122233456678
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC----------CcEEEEeccCCCCEEEE-----EECCCCCeEEEEe
Q 016187 244 ISADSTLALSGSKDGSVHMVNITT----------GKVVSSLVSHTDSIECI-----GFSRSSPWAATGS 297 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~h~~~i~~v-----~~~~~~~~l~s~s 297 (394)
|+..|....+---|..|..|++.. ...+..+..|-.+=.-. ...|+|+||++..
T Consensus 336 fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 336 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 888887666777899999999843 24555665443321111 2367899988764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.0094 Score=49.03 Aligned_cols=211 Identities=9% Similarity=0.026 Sum_probs=129.4
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe----eeEeecCcccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCC
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPS 137 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~----~~~~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~vwd~~ 137 (394)
....+.+|+|++....+..+=...+.|+--++.... ....+......+.+|++.+.+..|. +-...+.|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 345677899998777666665666777665554321 1222333345577899987666555 44566789999987
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEe--cCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE-eCCCc
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT 214 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~ 214 (394)
.......+.........++.+|...+++-. +..+.|...++............-..+..+++.+.++.|.-+ ...+.
T Consensus 108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~ 187 (266)
T d1ijqa1 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (266)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence 665555555555668889999865544433 234567777776554444333334567889999877766555 55678
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
|...++........+.... .......+++. ++.++.+-..++.|...+..+++....+.
T Consensus 188 I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 188 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEEETTSCSCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCC-cccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 8888886544333333221 12235566666 35555666677888888877776544443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.016 Score=47.43 Aligned_cols=220 Identities=8% Similarity=-0.042 Sum_probs=132.1
Q ss_pred CCCCEEEEEEcCCCCEEEE-ecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCCcEEEEcCCCCce
Q 016187 148 PGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~-~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~ 225 (394)
+...+..++|.+..+.++- -...+.|+..++........+......+.++++..-++.|. +-...+.|.+.++.....
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 3344667888887665544 45667888888876554444443345678899987566554 555677899999875543
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCc
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG-SMDQK 301 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-s~dg~ 301 (394)
...+.. .......++++|...+++-... ...|.-.++.......-....-.....+++++....|.-+ ...++
T Consensus 114 ~~l~~~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~ 190 (263)
T d1npea_ 114 RVLFDT---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (263)
T ss_dssp EEEECS---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEecc---cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence 322221 1245788999987776654432 2235555665433222222233567889998877766554 45678
Q ss_pred EEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEcc
Q 016187 302 LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSA 371 (394)
Q Consensus 302 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~ 371 (394)
|...++.....+...........++.. .+....+=...+.|...|..+++.+..+. ........+++.+
T Consensus 191 I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 191 AECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 888888654333222222234566665 33333444467889999998888877654 2223344565554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.48 E-value=0.022 Score=52.37 Aligned_cols=272 Identities=11% Similarity=0.055 Sum_probs=147.4
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCceEEEEecCCC-----------CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 118 DGQLLASGGLDGLVQIWDP-SSGNLKCTLEGPGG-----------GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
+|..+++.+.++.|...|. .+|+.+-.+..... .-+.+++. +..++.++.|+.+.-.|.++++.+-
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 3444433334677888887 46888766542110 00112332 3457778899999999999887654
Q ss_pred eeccc----CcCeEEEEECCCCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCc--------------------
Q 016187 186 MFSGH----GSSVTCGDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYH-------------------- 235 (394)
Q Consensus 186 ~~~~h----~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~-------------------- 235 (394)
..... ...++..-...++ .++.+. ..|.|+-+|..+|+.+-.....+..
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 33211 1111110011133 344443 3788999999999987655422100
Q ss_pred --------------ccCe-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCcEEEEeccCCCC----
Q 016187 236 --------------TEGL-TCLTISADSTLALSGSK----------------DGSVHMVNITTGKVVSSLVSHTDS---- 280 (394)
Q Consensus 236 --------------~~~i-~~~~~~~~~~~l~~g~~----------------dg~i~i~d~~~~~~~~~~~~h~~~---- 280 (394)
...+ ...++.++..+++.+.. ...+.-.|+++|+.+-.++.....
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 0011 22456677666665544 346778899999987665532111
Q ss_pred -----EEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCccee-------------------------------------
Q 016187 281 -----IECIGFSRSSP---WAATGSMDQKLIIWDLQHSLPRST------------------------------------- 315 (394)
Q Consensus 281 -----i~~v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~------------------------------------- 315 (394)
.....+..++. .++..+.+|.+.++|..+......
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 378 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEE
Confidence 11111112222 456677788888887654432110
Q ss_pred ccC-CCC--EEEEEEeCCCCEEEEEeC-------------------------------------CCeEEEEECCCCeEEE
Q 016187 316 CDH-EDG--VTCLMWLGTSKYVVTGCV-------------------------------------DGKVRVWDSLSGDCVR 355 (394)
Q Consensus 316 ~~~-~~~--v~~~~~~~~~~~l~sg~~-------------------------------------dg~i~iwd~~~~~~~~ 355 (394)
+.. ... -...+++|+..+++.... .|.|.-+|+.+|+.+-
T Consensus 379 ~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W 458 (571)
T d2ad6a1 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred EeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceee
Confidence 000 000 012456666555554332 2568888999999886
Q ss_pred EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+...-. +..+=.++..+.+++.|+.||.++-+|.++-
T Consensus 459 ~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tG 495 (571)
T d2ad6a1 459 TKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCC
Confidence 654211 1111112234567788999999999987753
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.43 E-value=0.046 Score=50.40 Aligned_cols=272 Identities=13% Similarity=0.130 Sum_probs=150.3
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCceEEEEecCCC-----------CEEEEEEcCC----CCEEEEecCCCeEEEEeCCcc
Q 016187 118 DGQLLASGGLDGLVQIWDP-SSGNLKCTLEGPGG-----------GVEWVSWHPR----GHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~----~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+|.++++.+..+.+...|. .+|+.+-.+..... .-+.+++.+. ...++.++.|+.|.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3444444455566776675 57877765531110 0123444433 246888899999999999998
Q ss_pred ceeeeecccC----cCeEEEEECC--CCCeEEEEeC------CCcEEEEcCCCCceEEEEcCCCC---------------
Q 016187 182 AYLNMFSGHG----SSVTCGDFTP--DGKTICTGSD------DATLRVWNPKSGENIHVIRGHPY--------------- 234 (394)
Q Consensus 182 ~~~~~~~~h~----~~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~--------------- 234 (394)
+.+-.+.... ..++ -.| -+..++.+.. .|.|+-+|..+|+.+-.+...+.
T Consensus 142 ~~~w~~~~~d~~~~~~~t---~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 218 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLT---IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (596)
T ss_dssp CEEEEEECCCGGGTCBCC---SCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ceeccccccccccccccc---cCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence 8766543211 1111 111 1344555543 48999999999998766532110
Q ss_pred --------------------cccCeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEecc--
Q 016187 235 --------------------HTEGLTCLTISADSTLALSGSKD----------------GSVHMVNITTGKVVSSLVS-- 276 (394)
Q Consensus 235 --------------------~~~~i~~~~~~~~~~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~~-- 276 (394)
....-...++.+...+++.+..+ ..|.-.|+.+|+.+-.++.
T Consensus 219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~ 298 (596)
T d1w6sa_ 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (596)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence 00011234566766666665432 3577889999998765542
Q ss_pred CCC-------CEEEEE-ECCCC---CeEEEEeCCCcEEEEeCCCCCcceecc---------------------------C
Q 016187 277 HTD-------SIECIG-FSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCD---------------------------H 318 (394)
Q Consensus 277 h~~-------~i~~v~-~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------------------~ 318 (394)
|.. .+..+. ...++ +.++....+|.+.++|-.+........ .
T Consensus 299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~ 378 (596)
T d1w6sa_ 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (596)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccC
Confidence 211 111111 12233 356777888888888865543221000 0
Q ss_pred CC-------------CEEEEEEeCCCCEEEEEeC---------------------------------------CCeEEEE
Q 016187 319 ED-------------GVTCLMWLGTSKYVVTGCV---------------------------------------DGKVRVW 346 (394)
Q Consensus 319 ~~-------------~v~~~~~~~~~~~l~sg~~---------------------------------------dg~i~iw 346 (394)
.. .-...+++|...++..... -|.|.-|
T Consensus 379 ~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~ 458 (596)
T d1w6sa_ 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (596)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEE
Confidence 00 0012344444444333211 2578899
Q ss_pred ECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 347 DSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 347 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|..+++.+-+... ..++..=.++..+.+++.|+.||.++-+|..+-
T Consensus 459 D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG 504 (596)
T d1w6sa_ 459 NAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (596)
T ss_dssp CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCC
Confidence 9999998765442 222222223345778888999999999997754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.31 E-value=0.036 Score=50.89 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=148.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCC----------CCE-EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPG----------GGV-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
..|+.++.++.|.-+|..+|+.+-.+.... ..+ ..+.+. ...++.++.|+.+.-.|..+++.+-...
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 356667788899999999999887654211 000 111222 2356677888888888888887654332
Q ss_pred c--cC-cCeEEEEECC--CCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCcc---------------------
Q 016187 189 G--HG-SSVTCGDFTP--DGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYHT--------------------- 236 (394)
Q Consensus 189 ~--h~-~~v~~~~~~~--~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~--------------------- 236 (394)
. +. ..+. +.-.| -+..++.++ ..|.|+-+|.++|+.+-.+...+...
T Consensus 156 ~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 156 TFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp TTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 1 11 1111 00011 123444443 24689999999999876653221000
Q ss_pred -------cCe-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCcEEEEecc--CC-------CC
Q 016187 237 -------EGL-TCLTISADSTLALSGSK-------------------DGSVHMVNITTGKVVSSLVS--HT-------DS 280 (394)
Q Consensus 237 -------~~i-~~~~~~~~~~~l~~g~~-------------------dg~i~i~d~~~~~~~~~~~~--h~-------~~ 280 (394)
..+ ...++.++...++.+.. ...|.-.|+++++..-..+. |. .+
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 12456666665554332 12466678888876644432 11 11
Q ss_pred EEEEEECCCC---CeEEEEeCCCcEEEEeCCCCCcceecc-----------------------------------CC-CC
Q 016187 281 IECIGFSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCD-----------------------------------HE-DG 321 (394)
Q Consensus 281 i~~v~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------------~~-~~ 321 (394)
........++ ..++.++.+|.+.++|..+........ +. ..
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~ 394 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCcc
Confidence 1111122222 356777888889888876543221100 00 00
Q ss_pred EEEEEEeCCCCEEEEEeCC-------------------------------------------CeEEEEECCCCeEEEEee
Q 016187 322 VTCLMWLGTSKYVVTGCVD-------------------------------------------GKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~d-------------------------------------------g~i~iwd~~~~~~~~~~~ 358 (394)
-...++.|+..+++....+ |.|.-||+.+|+.+-++.
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~ 474 (573)
T d1kb0a2 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (573)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeec
Confidence 1123556665554432211 468889999999887766
Q ss_pred cccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
... +...=..+..+.+|+.|+.||.++.||..+-
T Consensus 475 ~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TG 508 (573)
T d1kb0a2 475 HVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (573)
T ss_dssp ESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCC
Confidence 432 2222123346788888999999999997764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.26 E-value=0.048 Score=49.88 Aligned_cols=271 Identities=11% Similarity=0.071 Sum_probs=151.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCC----------CE-EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGG----------GV-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
..|+.++.++.|.-.|..+|+.+-.+..... .+ ..+.. .+..++.+..++.+.-.|..+++.+-...
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 3566677788898899999998876532110 00 01111 13467788889999999988887765543
Q ss_pred ccCcC-eEEEEECC--CCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCc------------------------
Q 016187 189 GHGSS-VTCGDFTP--DGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYH------------------------ 235 (394)
Q Consensus 189 ~h~~~-v~~~~~~~--~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~------------------------ 235 (394)
..... ...+.-.| .+..++.+. ..|.|+-+|.++|+.+-.+...+..
T Consensus 145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (560)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence 22110 00000111 122333332 2367999999999987665421100
Q ss_pred ---cc-CeEEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCcEEEEeccCCCC---------EEE
Q 016187 236 ---TE-GLTCLTISADSTLALSGSK-------------------DGSVHMVNITTGKVVSSLVSHTDS---------IEC 283 (394)
Q Consensus 236 ---~~-~i~~~~~~~~~~~l~~g~~-------------------dg~i~i~d~~~~~~~~~~~~h~~~---------i~~ 283 (394)
.. .-...++.+...+++.+.. ...|.-.|+++++..-.++..... ..-
T Consensus 225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l 304 (560)
T d1kv9a2 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (560)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence 00 0122456676666654332 245777899999876554432111 111
Q ss_pred EEECCCC---CeEEEEeCCCcEEEEeCCCCCcceecc------------------------C-CCC------------EE
Q 016187 284 IGFSRSS---PWAATGSMDQKLIIWDLQHSLPRSTCD------------------------H-EDG------------VT 323 (394)
Q Consensus 284 v~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------~-~~~------------v~ 323 (394)
+.+..++ ..++.+..+|.+.++|..+........ . ... ..
T Consensus 305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 384 (560)
T d1kv9a2 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWH 384 (560)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSS
T ss_pred eeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccc
Confidence 1111222 356677888888888876543221100 0 000 01
Q ss_pred EEEEeCCCCEEEEEeC------------------------------------CCeEEEEECCCCeEEEEeecccCceeEE
Q 016187 324 CLMWLGTSKYVVTGCV------------------------------------DGKVRVWDSLSGDCVRTFSGHRDAIQAI 367 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l 367 (394)
..++.|+..++..-.. .|.|.-||+.+++.+-++.. ..+...=
T Consensus 385 ~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg 463 (560)
T d1kv9a2 385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGG 463 (560)
T ss_dssp CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCC
T ss_pred cccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCc
Confidence 2345666555554321 25788999999998877652 2222222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 368 SVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 368 ~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.++-.+.+++.|+.||.++-+|..+-
T Consensus 464 ~l~TagglVF~G~~dg~l~A~Da~tG 489 (560)
T d1kv9a2 464 TLSTAGNLVFQGTAAGQMHAYSADKG 489 (560)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eeEECCCEEEEECCCCcEEEEECCCC
Confidence 23345678888999999999997764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.94 E-value=0.074 Score=43.55 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=156.2
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
.+|.|-|+.++.....-.-. -.+.-.||..+.++.-+ ..++.++|+++++.++.+.-... |.--.|-.+ +.|+.
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~---AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~-~~L~l 118 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-NTVAL 118 (327)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESSS-SEEEE
T ss_pred ceEEEEECCCCCcceecccc---hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecCC-CEEEE
Confidence 46888888766532221111 12355688888887665 56899999999988887665554 444456544 34544
Q ss_pred EeCCCcEEEEcCCCC-ceEEEEcCCC-CcccCeEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCcEEEEeccCCC
Q 016187 209 GSDDATLRVWNPKSG-ENIHVIRGHP-YHTEGLTCLTISADSTLALSGS---K----DGSVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~g~---~----dg~i~i~d~~~~~~~~~~~~h~~ 279 (394)
.+ +..|.-|++... ++.+.+..++ .....|..-..+++.++++..+ . .|.+.+|....+ .-+.+.+|..
T Consensus 119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa 196 (327)
T d1utca2 119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 196 (327)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceee
Confidence 43 357999998543 3444444333 2233466677788888765432 2 367788987654 4456677765
Q ss_pred CEEEEEECCCC---CeEEEE---eCCCcEEEEeCCCCC------cceec-------cCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 280 SIECIGFSRSS---PWAATG---SMDQKLIIWDLQHSL------PRSTC-------DHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 280 ~i~~v~~~~~~---~~l~s~---s~dg~i~iwd~~~~~------~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
.-..+.+..+. .+++-+ ...+++.|-++.... .+... ...+-..++..++....+..-+.-
T Consensus 197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~ 276 (327)
T d1utca2 197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 276 (327)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC
Confidence 54444443221 123222 233678888875421 11111 112335677788888889999999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
|-|++||+.++.++..-.--.+.|..-+-..+..-++.....|.|..
T Consensus 277 G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 277 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 99999999999999876665667765555556666777778886654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.11 Score=42.21 Aligned_cols=234 Identities=11% Similarity=-0.016 Sum_probs=137.1
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~ 203 (394)
..|+..++.+.+....+. ....+..+.|++..+.++-. ...+.|+-.++.... ...........+..+++.+.+
T Consensus 10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 358888887766544444 34567789999877755444 456667766654321 112222233456678888766
Q ss_pred CeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeccCCCC
Q 016187 204 KTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--KDGSVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 204 ~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
+.|. +-...+.|.+.++........+.. .......++++|...+++-.. ..+.|.-.++.......-....-..
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~---~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~ 165 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 165 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEEcC---CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce
Confidence 5554 445667899999876554333332 234577889988655554432 3456777777554333323333456
Q ss_pred EEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 016187 281 IECIGFSRSSPWAATG-SMDQKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 356 (394)
...+++++.+..|.-+ ...++|...++......... ........++... +....+-..++.|+..+..+++....
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~ 244 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL 244 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEE
Confidence 7899999877765554 55678888888654333221 1122355666663 33333444678888888888877666
Q ss_pred eecccCceeEE
Q 016187 357 FSGHRDAIQAI 367 (394)
Q Consensus 357 ~~~h~~~v~~l 367 (394)
+.........|
T Consensus 245 ~~~~~~~p~~i 255 (266)
T d1ijqa1 245 LAENLLSPEDM 255 (266)
T ss_dssp EECSCSCCCCE
T ss_pred EEcCCCCceEE
Confidence 65443333333
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.27 E-value=0.31 Score=42.48 Aligned_cols=239 Identities=11% Similarity=0.059 Sum_probs=117.6
Q ss_pred EEEEEEcCCCCcEEEEe---c-CCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeCC-------------
Q 016187 67 VYSVACSPTDATLVATG---G-GDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLD------------- 128 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg---~-~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d------------- 128 (394)
+...+++|++..++.+- | .-.++++.|+.+++.+. .+.. .....++|++|++.|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 44567899765544342 2 23457899999998764 2321 112468899999987654432
Q ss_pred ---CcEEEEeCCCCce--EEEEecCC--CCEEEEEEcCCCCEEEEec---CCCe--EEEEeCCccc--------eeeeec
Q 016187 129 ---GLVQIWDPSSGNL--KCTLEGPG--GGVEWVSWHPRGHIVLAGS---EDST--VWMWNADRAA--------YLNMFS 188 (394)
Q Consensus 129 ---~~i~vwd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~~~s---~d~~--i~iw~~~~~~--------~~~~~~ 188 (394)
..|..|.+.+... ...+.... ..+..+..++++++++... .++. +.+.+..... ......
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 2577777766532 23344333 2455677888988765332 2333 4444443211 111111
Q ss_pred ccCcCeEEEEECCCCCeEEEEe---CCCcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCC--cE
Q 016187 189 GHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSG-SKDG--SV 260 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg--~i 260 (394)
.......-+ .+.++.+++... .++.|...++..... ...+-. .+...+..-.+...+.+++.. -.++ .|
T Consensus 285 ~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~--~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l 361 (430)
T d1qfma1 285 NFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP--EHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (430)
T ss_dssp SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC--CCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred ccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEec--ccCcceeeeEEEEECCEEEEEEEcCCEeEE
Confidence 112222211 112222333222 234555555544321 122211 122233333333344455444 3444 57
Q ss_pred EEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE--Ee--CCCcEEEEeCCCC
Q 016187 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT--GS--MDQKLIIWDLQHS 310 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s--~s--~dg~i~iwd~~~~ 310 (394)
+++++.+++...........+..+...++...+.. .| .-.++.-+|+.+.
T Consensus 362 ~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 88999888765554444455555544444443222 11 1245666777654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.67 E-value=0.43 Score=38.95 Aligned_cols=226 Identities=11% Similarity=0.095 Sum_probs=133.1
Q ss_pred EEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEecCC
Q 016187 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEGPG 149 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~~~ 149 (394)
-.+|. ..+||--+ ..+++++|+++.+.+..+.-. ++|.-=.|-.+ +.|+-.. +..|.=|++... .....+..|.
T Consensus 69 IMhP~-~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 69 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred hcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence 35775 45666554 468999999998777666533 45655677654 3555443 457999998532 3344444332
Q ss_pred ----CCEEEEEEcCCCCEEEEec---C----CCeEEEEeCCccceeeeecccCcCeEEEEECCCC---CeEEEE---eCC
Q 016187 150 ----GGVEWVSWHPRGHIVLAGS---E----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG---KTICTG---SDD 212 (394)
Q Consensus 150 ----~~v~~~~~~~~~~~l~~~s---~----d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~---~~d 212 (394)
..|-.-+-+++.+.++..+ . .|.+.+|..+.+. .+.+.||......+.+.-+. +.++.+ ...
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 3455556677777554322 2 3677899887654 45677887655444332111 223322 223
Q ss_pred CcEEEEcCCCCc---e-----EEEEc-CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 213 ATLRVWNPKSGE---N-----IHVIR-GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 213 g~i~vwd~~~~~---~-----~~~~~-~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
+.+.+-++.... . ...+. ...+..+-..++.+++.-.++..-+.-|.|+++|+.++.++..-+--.++|..
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence 578888765421 1 11111 12223445677888888888889999999999999999988765544555554
Q ss_pred EEECCCCCeEEEEeCCCcE
Q 016187 284 IGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i 302 (394)
-+-.....=++.....|.|
T Consensus 303 ~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 303 TAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp EEEETTTTEEEEEETTSEE
T ss_pred eccCCCCceEEEECCCCeE
Confidence 4333333333333445544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.51 Score=40.21 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=97.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----------CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS-----------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
...-++.++...+++.|+.++ ++|-.+. .......... ..|..++|+.+ .|+. ..++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i--p~v~~vafs~d--~l~v-~~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI--PDVIFVCFHGD--QVLV-STRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC--TTEEEEEEETT--EEEE-EESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC--CCeEEEEeeCC--EEEE-EeCCCEEEEE
Confidence 355678888777888888775 5665421 1111111222 25888999755 3433 3456677777
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC--CcccCeEEEEEcCCCCEEEEEe
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
............-..++..+.++|. .++....++.+-++++..++......+.. .......++.|++.++.++++.
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 7654333333333456677777664 56777788999999998876433321100 0124567777777777777663
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
.+..-.--++.....+.........+.+|.|-.+..++++-
T Consensus 190 g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 32211111111111000000123356777777666665543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.65 Score=37.39 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=28.8
Q ss_pred eEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceE
Q 016187 88 KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLK 142 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~---------d~~i~vwd~~~~~~~ 142 (394)
.+.+||++++++... +......-..+.+ ++.+++.|+. -..+.+||..+....
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~ 83 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 83 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence 467899988876543 3222222222222 4555555552 135678887766554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.04 E-value=2 Score=38.75 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|.|.-+|+.+|+.+-++..+. ++..=.++..+.+++.|+.||.++-+|.++-
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG 517 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCC
Confidence 678899999999988776433 3332223456778888999999999997764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.25 E-value=2 Score=35.99 Aligned_cols=186 Identities=12% Similarity=0.137 Sum_probs=108.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC----C--CCEEEEec--CC--CeEEEEeCCc-cceee
Q 016187 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP----R--GHIVLAGS--ED--STVWMWNADR-AAYLN 185 (394)
Q Consensus 117 ~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~~~s--~d--~~i~iw~~~~-~~~~~ 185 (394)
|+..+++.....+-|.+||+. |+.+..+. .+.++.|..-. . ..-++.++ .+ .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 455677777777779999985 77766553 34555554331 2 22344444 22 3677787642 22222
Q ss_pred eeccc-------CcCeEEEEE--CCC-CC-eEEEEeCCCcEEEEcCC---CCc----eEEEEcCCCCcccCeEEEEEcCC
Q 016187 186 MFSGH-------GSSVTCGDF--TPD-GK-TICTGSDDATLRVWNPK---SGE----NIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 186 ~~~~h-------~~~v~~~~~--~~~-~~-~l~s~~~dg~i~vwd~~---~~~----~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.+... ...+..+++ ++. |. +++....+|.+..|.+. .+. .+..+.. ...+..+.+.++
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde 190 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDE 190 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCC
Confidence 22111 123444554 664 44 45677778999888653 222 2223322 235777889999
Q ss_pred CCEEEEEeCCCcEEEEECCC-----CcEEEEecc--CCCCEEEEEECC--C--CCeEEEEeCCCcEEEEeCCC
Q 016187 248 STLALSGSKDGSVHMVNITT-----GKVVSSLVS--HTDSIECIGFSR--S--SPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~--h~~~i~~v~~~~--~--~~~l~s~s~dg~i~iwd~~~ 309 (394)
...|+.+-++..|+.++... +..+....+ ....++.+++-. + +-+++|.-.+++..+||...
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 99999998888887777542 233333322 356777777532 2 33455555678899999765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.61 E-value=2.8 Score=36.06 Aligned_cols=235 Identities=14% Similarity=0.132 Sum_probs=117.3
Q ss_pred EEEEcCCCCEEEEe-c----CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC----------------
Q 016187 154 WVSWHPRGHIVLAG-S----EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---------------- 212 (394)
Q Consensus 154 ~~~~~~~~~~l~~~-s----~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------------- 212 (394)
..+++|++++++.+ + .-..++++|+.+++.+...-. ......++|.++++.|+-...+
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~ 207 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred ceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence 45678999877632 2 234789999999876542211 1112357899999987644322
Q ss_pred CcEEEEcCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCc--EEEEECCCCc--------EEEEeccC
Q 016187 213 ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGS--VHMVNITTGK--------VVSSLVSH 277 (394)
Q Consensus 213 g~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~--i~i~d~~~~~--------~~~~~~~h 277 (394)
..|..|.+.+... ...+... -....+..+..++++++++.... +.. +.+.++.... ........
T Consensus 208 ~~v~~h~lgt~~~~d~~v~~e~-d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 286 (430)
T d1qfma1 208 QKLYYHVLGTDQSEDILCAEFP-DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (430)
T ss_dssp CEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred ceEEEEECCCCccccccccccc-cCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence 2566777665532 2222211 11223566778899988765432 233 4444543211 11111111
Q ss_pred CCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCcc---eecc-CCCCEEEEEEeCCCCEEEEE-eCCC--eEEEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSM---DQKLIIWDLQHSLPR---STCD-HEDGVTCLMWLGTSKYVVTG-CVDG--KVRVWD 347 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~sg-~~dg--~i~iwd 347 (394)
.....-+. +.++.+++.... .+.|...++...... .... +...+..-.+...+.+|+.. -.++ .|++++
T Consensus 287 ~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~ 365 (430)
T d1qfma1 287 EGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (430)
T ss_dssp SSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence 22222222 222233333322 356666666543221 1222 33334433333444555544 4554 488899
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCC-EEEEEeC---CCcEEEEecc
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSL---DGTARVFEIA 391 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~---dg~i~iw~~~ 391 (394)
..+++....+..-.+.|..+...++.. +.++.+. =.++.-+|+.
T Consensus 366 ~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 366 LATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp TTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 888876655444345555554444443 3333332 2556666654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.22 E-value=2.7 Score=34.97 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCeeeE-ee--cCc-----ccCEEEEEE--cCCCC-EEEEE---eCCCcEEEEeCCCCc--e--EEEEec
Q 016187 86 DDKGFFWRINQGDWAS-EI--QGH-----KDSVSSLAF--SMDGQ-LLASG---GLDGLVQIWDPSSGN--L--KCTLEG 147 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~-~~--~~h-----~~~V~~v~~--s~~g~-~l~t~---s~d~~i~vwd~~~~~--~--~~~~~~ 147 (394)
.|.+.++|+.+.+... .+ .+. .-.-..+.+ .++|+ +|+.. ....+|.++++.... . +.++..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4788888886543221 11 111 001223333 45676 34444 245678888765332 2 223332
Q ss_pred C-CCCEEEEEEcCCCCEEEEec-----------------CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-E
Q 016187 148 P-GGGVEWVSWHPRGHIVLAGS-----------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-T 208 (394)
Q Consensus 148 ~-~~~v~~~~~~~~~~~l~~~s-----------------~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s 208 (394)
+ ....+.+....++.+++|-. .-+.+..|+....+ ... ..-...+.++++|++++|+ +
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~--~~~-~~l~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR--VVA-EGFDFANGINISPDGKYVYIA 223 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE--EEE-EEESSEEEEEECTTSSEEEEE
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE--EEc-CCCCccceeEECCCCCEEEEE
Confidence 2 24578888888888877721 12234444443322 222 2234578899999998775 4
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSG 254 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g 254 (394)
-+..+.|++|++.....+....... -....-.+.+.+. +.+.+++
T Consensus 224 ~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 224 ELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred eCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 4567889999886554333222111 1223455666654 4444433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=2.9 Score=35.27 Aligned_cols=135 Identities=8% Similarity=-0.063 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcC-----------CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRIN-----------QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~-----------~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..-++.++..+ +++.|+.++ +.|-... ..++.... .-..|..++|+.+ .|+.. .++.+..++
T Consensus 39 ~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 39 LQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred cceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 44567777544 565566664 4555521 11111111 1235889999755 45544 455688887
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-----cCcCeEEEEECCCCCeEEEEe
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~ 210 (394)
...-...........++..+.++|. .++....++.+.++.+..++......+ -...+.++.|++.|+.++++.
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 7654444444444567888888875 455566788999999877653322111 134567778888887777764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=2.5 Score=33.62 Aligned_cols=213 Identities=16% Similarity=0.181 Sum_probs=89.1
Q ss_pred cEEEEeCCCCceEEE--EecCCCCEEEEEEcCCCCEEEEecC---------CCeEEEEeCCccceeee--ecccCcCeEE
Q 016187 130 LVQIWDPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLNM--FSGHGSSVTC 196 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~---------d~~i~iw~~~~~~~~~~--~~~h~~~v~~ 196 (394)
.+.+||+.+++.... +..+......+. .++++++.|+. -..+.+||..+...... +......-.+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEE--ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 567888887765432 111111112222 24566666653 13567788765433221 1111111112
Q ss_pred EEECCCCCeEEEEeCCCc-----EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECC
Q 016187 197 GDFTPDGKTICTGSDDAT-----LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNIT 266 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~ 266 (394)
+.+ +++.++.++.++. +..+|..+..- ......+........+ .. ++.+++.|+.+ ..+..||..
T Consensus 98 ~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 98 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEE-EE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred ccc--ceeeEEecceecccccceeeeeccccCcc-ccccccccccccceee-ee-eecceEecCcccccccceEEEeecc
Confidence 222 4555555554443 33456555432 1111111111112222 22 34555555543 456788887
Q ss_pred CCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCcceeccC-CCCE-EEEEEeCCCCEEEEEe
Q 016187 267 TGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMD-----QKLIIWDLQHSLPRSTCDH-EDGV-TCLMWLGTSKYVVTGC 338 (394)
Q Consensus 267 ~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~-~~~v-~~~~~~~~~~~l~sg~ 338 (394)
+.+....-... ...-.++... .+.+++.++.+ .....+|+........... .... .+++. .++++++.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG 250 (288)
T d1zgka1 173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGG 250 (288)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEec
Confidence 66533221110 0111112222 23344444433 2455666654322111110 1111 12222 2567777776
Q ss_pred CCC-----eEEEEECCCC
Q 016187 339 VDG-----KVRVWDSLSG 351 (394)
Q Consensus 339 ~dg-----~i~iwd~~~~ 351 (394)
.++ .|.+||+.+.
T Consensus 251 ~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 251 YDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp BCSSCBCCEEEEEETTTT
T ss_pred CCCCeecceEEEEECCCC
Confidence 554 3788888754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.60 E-value=1.3 Score=38.67 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=39.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCCCEEEEEEcCC
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--------GPGGGVEWVSWHPR 160 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~ 160 (394)
-+.-++|+|.|+|++|++--..|.|++++..+++...... .-.+....++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3456799999999998877567999999987776543221 12356788999995
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.07 E-value=3.6 Score=34.25 Aligned_cols=201 Identities=12% Similarity=0.165 Sum_probs=110.0
Q ss_pred EEEEcCCC--CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEE------EcCCCCEEEEEeC--C--CcEEEEeC
Q 016187 69 SVACSPTD--ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA------FSMDGQLLASGGL--D--GLVQIWDP 136 (394)
Q Consensus 69 ~~~~~p~~--~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~------~s~~g~~l~t~s~--d--~~i~vwd~ 136 (394)
+|-.+|.+ ..++.+....+-+++|+++ |+.+..+. .+.+..|. +.....-|+.++. + .+|.+|.+
T Consensus 30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i 106 (353)
T d1h6la_ 30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (353)
T ss_dssp EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence 44445532 2344444556669999985 66666654 23344443 3223334555552 2 35777866
Q ss_pred CC-CceEEEEecC-------CCCEEEEEE--cCC-CC-EEEEecCCCeEEEEeCC---cc----ceeeeecccCcCeEEE
Q 016187 137 SS-GNLKCTLEGP-------GGGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCG 197 (394)
Q Consensus 137 ~~-~~~~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~~s~d~~i~iw~~~---~~----~~~~~~~~h~~~v~~~ 197 (394)
.. ...+..+... ...+..+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. -...+-.|
T Consensus 107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGC 185 (353)
T d1h6la_ 107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGM 185 (353)
T ss_dssp ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEE
T ss_pred cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceE
Confidence 42 2223333221 123556666 554 43 56677788999888763 22 2334443 34567788
Q ss_pred EECCCCCeEEEEeCCCcEEEEcCC--CCc---eEEEEcCCCCcccCeEEEEEc--C--CCCEEEEEeCCCcEEEEECCCC
Q 016187 198 DFTPDGKTICTGSDDATLRVWNPK--SGE---NIHVIRGHPYHTEGLTCLTIS--A--DSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~vwd~~--~~~---~~~~~~~~~~~~~~i~~~~~~--~--~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.+.+..+.|+.+-.+.-|..++.. ... .+....+. .....+-.|++- + +|-++++.-.+.+..+||..+.
T Consensus 186 VvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~-~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 186 AADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR-HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSS-SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCc-cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999988899998887766555443 221 12121221 123344445432 2 3445566667889999998763
Q ss_pred -cEEEEe
Q 016187 269 -KVVSSL 274 (394)
Q Consensus 269 -~~~~~~ 274 (394)
+.+.++
T Consensus 265 ~~~~g~F 271 (353)
T d1h6la_ 265 NKYVADF 271 (353)
T ss_dssp CCEEEEE
T ss_pred ccccceE
Confidence 555554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.29 E-value=4.2 Score=33.68 Aligned_cols=174 Identities=14% Similarity=0.155 Sum_probs=92.6
Q ss_pred EEEECCCCCeEEEEeC------------CCcEEEEcCCCCceE-EEE--cCCC-----CcccCeEEEEEcCCCCE-EEE-
Q 016187 196 CGDFTPDGKTICTGSD------------DATLRVWNPKSGENI-HVI--RGHP-----YHTEGLTCLTISADSTL-ALS- 253 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~-~~~--~~~~-----~~~~~i~~~~~~~~~~~-l~~- 253 (394)
.++..|+|..+++++. .|.|.++|+.+.+.. ..+ .+.. ++..++ .+...++++. |++
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi-~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI-STFIDDDNTVYLLVV 117 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEE-EEEECTTCCEEEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccce-eEEEcCCCcEEEEEE
Confidence 4666777776665532 488999998765321 111 1111 121222 2233456653 333
Q ss_pred E--eCCCcEEEEECCCCc-E---EEEecc-CCCCEEEEEECCCCCeEEEEeC-----------------CCcEEEEeCCC
Q 016187 254 G--SKDGSVHMVNITTGK-V---VSSLVS-HTDSIECIGFSRSSPWAATGSM-----------------DQKLIIWDLQH 309 (394)
Q Consensus 254 g--~~dg~i~i~d~~~~~-~---~~~~~~-h~~~i~~v~~~~~~~~l~s~s~-----------------dg~i~iwd~~~ 309 (394)
. ....+|.+|++.... . +.++.. .....+.+.+..++.+++|-.. -+.+.-||..
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~- 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN- 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-
Confidence 2 245678888875322 2 222322 1245788888888888888421 1223334432
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEE--eecccCceeEEEEccC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRT--FSGHRDAIQAISVSAH 372 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~ 372 (394)
........-...+.++++|++++|+.+ +..++|++|++.....+.. ...-.+..-.+.+.++
T Consensus 197 -~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~ 261 (340)
T d1v04a_ 197 -DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV 261 (340)
T ss_dssp -CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred -ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence 222222223457889999999876554 5678899998764332221 1112334556666553
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.67 E-value=6.3 Score=32.28 Aligned_cols=188 Identities=13% Similarity=0.205 Sum_probs=106.3
Q ss_pred CCCCeEEEEeCCCcEEEEcCCC-----CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE---ECCC-----
Q 016187 201 PDGKTICTGSDDATLRVWNPKS-----GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV---NITT----- 267 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~---d~~~----- 267 (394)
|+...+++-+.+|.|+--.+.+ +... .++ ..+.+..+........++.=+..|.++.. ++..
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~-~~k----~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s 77 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDF-AMK----DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCC-CCC----TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCC-ccc----CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccc
Confidence 5666778888888887543321 1000 011 12234433333333333444556655544 3331
Q ss_pred -CcEEEEecc--CCCCE-EEEEECC--CCCeEEEEeCCCcEEEEeCCCCCc--------ceeccCCCCEEEEEEeCCCCE
Q 016187 268 -GKVVSSLVS--HTDSI-ECIGFSR--SSPWAATGSMDQKLIIWDLQHSLP--------RSTCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 268 -~~~~~~~~~--h~~~i-~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~ 333 (394)
|.++..+.. ....+ ..+...+ ...+|+..+..|.++...+..... .....-.+.+..+........
T Consensus 78 ~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~ 157 (323)
T d1wp5a_ 78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNE 157 (323)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSE
T ss_pred ccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeE
Confidence 334333221 22333 3333332 356888899999999988643211 112234556777777777788
Q ss_pred EEEEeCCCeEEEEECCC-------CeEEE--EeecccCcee-EEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 334 VVTGCVDGKVRVWDSLS-------GDCVR--TFSGHRDAIQ-AISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 334 l~sg~~dg~i~iwd~~~-------~~~~~--~~~~h~~~v~-~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
++.++..|.+..|+... ++-++ .+.. .+.|. ...+.+++..|+..+..|..+.-.+..|+
T Consensus 158 i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~ 227 (323)
T d1wp5a_ 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFE 227 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred EEEEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccchhhc
Confidence 99999999999997532 12222 2332 33444 44556677889999999999888777664
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=82.05 E-value=10 Score=29.85 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=98.6
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
..|..++--. .+.++ -. ||.|+.|-....-.+-.-......+..++.- +...++. .|+.+..|.....-.....
T Consensus 26 ~~i~~va~G~-~h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~al--~dg~v~~wG~~~~gq~~~~ 99 (273)
T d1jtdb_ 26 SGVDAIAGGY-FHGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLAL--KDGEVIAWGGNEDGQTTVP 99 (273)
T ss_dssp SSEEEEEECS-SEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred CCcEEEEccC-CEEEE-EE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceeee--eeeeeeccCCCcceeeccc
Confidence 4566665532 22333 34 7999999654432221111122334444332 1122332 4789999975322111000
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
. .....+..+...... .+. -.|+.+..|.-...............|..+.-.. +......++.+..|....
T Consensus 100 ~---~~~~~~~~i~~~~~~--~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~g~~~~~G~~~ 170 (273)
T d1jtdb_ 100 A---EARSGVDAIAAGAWA--SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV---YTALAVKNGGVIAWGDNY 170 (273)
T ss_dssp G---GGGSSCCEEEEETTE--EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SEEEEEETTEEEEEECCT
T ss_pred c---ccccceeEEeeeccc--ccc-cccccceecccCCCCceeeeccCCceEEEEeccc---eeeeeecccceeEeeccc
Confidence 0 011223333333222 222 2478888886433211111111123344443221 222233477888886543
Q ss_pred CCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 310 SLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 310 ~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
... .........|..++...... ++. .||+|+.|=.....++..-......|..|+-.... .++. .||.|..|
T Consensus 171 ~g~~~~~~~~~~~v~~Is~G~~h~-~~l--~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~W 244 (273)
T d1jtdb_ 171 FGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVIAW 244 (273)
T ss_dssp TSTTSCCGGGSSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEEEE
T ss_pred CCcccccccccCCccceeccceee-EEE--ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEEEE
Confidence 221 12223345677776543322 222 38999999543322222112223457777765433 3333 37999998
Q ss_pred e
Q 016187 389 E 389 (394)
Q Consensus 389 ~ 389 (394)
-
T Consensus 245 G 245 (273)
T d1jtdb_ 245 G 245 (273)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=80.18 E-value=12 Score=29.42 Aligned_cols=221 Identities=18% Similarity=0.124 Sum_probs=99.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
..|..|+.- ..+.+|. . |+.++-|-.+..-.+..-......|..|+.-. ...++. .|+.+..|.......+..
T Consensus 26 ~~i~~va~G--~~h~~al-~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~al--~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 26 SGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLAL--KDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp SSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEEE--ETTEEEEEECCTTSTTCC
T ss_pred CCcEEEEcc--CCEEEEE-E-CCEEEEEeCCCCCceeeeecccccceEEecCC-Cceeee--eeeeeeccCCCcceeecc
Confidence 357777763 2344554 3 78999997654332221122234455555322 222332 489999997543211111
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
.......+..++-.... .+. -.|+.++.|.................|..++-. .+.+....++.+..|-.....
T Consensus 99 ~~~~~~~~~~i~~~~~~--~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~g~~~~~G~~~~g 172 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGAWA--SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALAVKNGGVIAWGDNYFG 172 (273)
T ss_dssp CGGGGSSCCEEEEETTE--EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEEEETTEEEEEECCTTS
T ss_pred ccccccceeEEeeeccc--ccc-cccccceecccCCCCceeeeccCCceEEEEecc---ceeeeeecccceeEeecccCC
Confidence 11111223333333222 222 247889999754322111111112233333321 222223347888888543322
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLII 304 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~i 304 (394)
.... .......|..++....-.. +. .||.|+-|=....-.+..-......|..|+-.... .++. .||.|..
T Consensus 173 ~~~~---~~~~~~~v~~Is~G~~h~~-~l--~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~ 243 (273)
T d1jtdb_ 173 QTTV---PAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVIA 243 (273)
T ss_dssp TTSC---CGGGSSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEEE
T ss_pred cccc---cccccCCccceeccceeeE-EE--ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEEE
Confidence 1100 0112335666655432222 22 27889888643211111111122346666655433 2333 3799999
Q ss_pred EeC
Q 016187 305 WDL 307 (394)
Q Consensus 305 wd~ 307 (394)
|-.
T Consensus 244 WG~ 246 (273)
T d1jtdb_ 244 WGS 246 (273)
T ss_dssp EST
T ss_pred ECC
Confidence 954
|