Citrus Sinensis ID: 016197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTPSE
ccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEEEEEEccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEcEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEEEccccEEEEEEcccEEEEEcccccccccccccccccccccccccccc
cccccccccccccccccEEEEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEHcccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccccEEEccc
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALwgngdygrlglgslesrwrpvvcSAFEKHSLKALACGGAHTLFLTETgcvyatglndfgqlgisenigysleplrisglkKEVVQISTGyhhssaitvdgelymwgknsngqlglgkkaakvipiptkveclSGIFTKQAALGFEQSvavtgggkvlswgaggsgrlghgqessilgflrstseyTPRLIKELEGVKVKIAAAGFLHsacidengrvyifgDRAVDKMLFqegnharrpslisklpyseevvcggyhtcvltsggelytwgsnengclgigsidvlhspervqgpfsespvdqvscgwkhtaaisegkiltwgwggshgtfsedghssggqldrgqltpse
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTfsedghssggqldrgqltpse
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTPSE
******TAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSP***********VDQVSCGWKHTAAISEGKILTWGWGGSH***********************
*LGR***AMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGG***********
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERV*************CGWKHTAAISEGKILTWGWGGSHGTFS*******************
*****LTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLDRGQL****
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MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTPSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.793 0.709 0.345 7e-41
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.796 0.296 0.325 9e-37
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.796 0.296 0.322 3e-36
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.758 0.061 0.356 5e-35
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.796 0.296 0.313 7e-35
Q15034 1050 Probable E3 ubiquitin-pro no no 0.748 0.28 0.331 7e-31
F2Z461 1003 E3 ISG15--protein ligase no no 0.651 0.255 0.325 1e-26
Q92834 1020 X-linked retinitis pigmen no no 0.674 0.259 0.320 1e-26
Q6NXM2 531 RCC1 and BTB domain-conta no no 0.643 0.476 0.321 7e-26
Q80YD6464 Secretion-regulating guan no no 0.783 0.663 0.301 6e-25
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 166/330 (50%), Gaps = 18/330 (5%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 39  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 98

Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 99  RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 157

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 158 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 266

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 267 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 325

Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWG 367
            +  V QVSCGW+HT A++E   +  WG G
Sbjct: 326 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG 355
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description
>sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1 Back     alignment and function description
>sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
225438323420 PREDICTED: E3 ubiquitin-protein ligase H 0.966 0.904 0.684 1e-156
224083557419 predicted protein [Populus trichocarpa] 0.951 0.892 0.723 1e-148
356508920417 PREDICTED: probable E3 ubiquitin-protein 0.890 0.839 0.700 1e-148
449453906481 PREDICTED: probable E3 ubiquitin-protein 0.910 0.744 0.685 1e-142
356518818404 PREDICTED: LOW QUALITY PROTEIN: probable 0.890 0.866 0.678 1e-140
30682540434 regulator of chromosome condensation rep 0.951 0.861 0.673 1e-137
297810989434 hypothetical protein ARALYDRAFT_487713 [ 0.946 0.857 0.674 1e-136
13548329435 putative protein [Arabidopsis thaliana] 0.928 0.839 0.638 1e-127
255549098374 Williams-Beuren syndrome chromosome regi 0.811 0.852 0.669 1e-123
212721370418 uncharacterized protein LOC100194342 [Ze 0.910 0.856 0.590 1e-122
>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/384 (68%), Positives = 319/384 (83%), Gaps = 4/384 (1%)

Query: 4   RSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV 63
           RS   +++  L+   KLG  LG C+R  SS  ++RFAALWGNGD+GRLGLGSLES+WRP 
Sbjct: 3   RSCMRVSQSALQS--KLG--LGFCRRLSSSEPRKRFAALWGNGDFGRLGLGSLESQWRPA 58

Query: 64  VCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK 123
           VCSAF+ HSL A+ACGGAHTLFLTE+GCVYA GLNDFGQLG+S +  Y+ EPL +S L K
Sbjct: 59  VCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTTEPLEVSALPK 118

Query: 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183
           +++ I+ GY+HS+AIT DGELYMWGKNSNGQLGLGKKAA  + +P+KVECL+GI  K  A
Sbjct: 119 KIIHIAAGYYHSAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVA 178

Query: 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA 243
           LG E SVA T  G+ LSWGAGGSGRLGHG ESS+LGF R++SEY PRLI+ LEG+KVK  
Sbjct: 179 LGSEHSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNV 238

Query: 244 AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVL 303
           AAG LHSACIDENG V+IFG+RA+DK  F+E  +A  PS+IS+LPYS++V CGGYHTCV+
Sbjct: 239 AAGLLHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVI 298

Query: 304 TSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILT 363
           +S GEL+TWGSNENGCLG+G ++ +H PER++GPFS++PV QVSCGWKHTAAISEG + T
Sbjct: 299 SSSGELFTWGSNENGCLGMGFMETIHFPERIEGPFSKNPVSQVSCGWKHTAAISEGNVFT 358

Query: 364 WGWGGSHGTFSEDGHSSGGQLDRG 387
           WGWGGS+GTFS+DGHSSGGQL +G
Sbjct: 359 WGWGGSYGTFSDDGHSSGGQLGQG 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224083557|ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356508920|ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518818|ref|XP_003528074.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4-like [Glycine max] Back     alignment and taxonomy information
>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana] gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|13548329|emb|CAC35876.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255549098|ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 16 protein, putative [Ricinus communis] gi|223545242|gb|EEF46749.1| Williams-Beuren syndrome chromosome region 16 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|212721370|ref|NP_001132850.1| uncharacterized protein LOC100194342 [Zea mays] gi|194695574|gb|ACF81871.1| unknown [Zea mays] gi|413924971|gb|AFW64903.1| putative regulator of chromosome condensation (RCC1) family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:504956339434 RUG1 "AT5G08710" [Arabidopsis 0.949 0.859 0.674 4.8e-142
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.791 0.706 0.350 1.3e-45
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.824 0.306 0.330 1.7e-39
MGI|MGI:1914595 1057 Herc4 "hect domain and RLD 4" 0.824 0.306 0.327 7.6e-39
UNIPROTKB|Q5GLZ8 1057 HERC4 "Probable E3 ubiquitin-p 0.824 0.306 0.318 7e-38
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.804 0.065 0.348 1.1e-37
UNIPROTKB|F1NCH3 1048 HERC4 "Uncharacterized protein 0.798 0.299 0.320 1.1e-37
UNIPROTKB|E2RFW5 1049 HERC4 "Uncharacterized protein 0.824 0.308 0.316 1.1e-37
UNIPROTKB|E2RFV1 1057 HERC4 "Uncharacterized protein 0.824 0.306 0.316 1.2e-37
UNIPROTKB|E1BAV2 1057 HERC4 "Uncharacterized protein 0.824 0.306 0.316 1.5e-37
TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 253/375 (67%), Positives = 304/375 (81%)

Query:    14 LKQDIKLGSKLGIC-KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS 72
             L +D KLG  +G+C  RW+SS   +RFAA+WG+GDYGRLGLG+L+S+W P VCSA   HS
Sbjct:    25 LLKDSKLGP-IGVCCSRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHS 83

Query:    73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY 132
             + A+ACGGAHTLFLTET  V+ATGLND GQLG+S+   ++++PL +SGL K+++ IS GY
Sbjct:    84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGY 143

Query:   133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
             +HS+AITVDGELYMWGKNS+GQLGLGKKAA+V+ +PTKVE L GI  +  ALG E SVAV
Sbjct:   144 YHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAV 203

Query:   193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
             T GG+VLSWG GGSGRLGHG +SS+ G LRS SE+TPRLIKELEG+KV   AAG LHSAC
Sbjct:   204 TDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSAC 263

Query:   253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312
              DENG  ++FG+++++KM F    +A  PS+IS++PY+EEV CGGYHTCV+T GGELYTW
Sbjct:   264 TDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGGELYTW 323

Query:   313 GSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGT 372
             GSNENGCLG  S  V HSP RV+GPF ES V QVSCGWKHTAAIS+  + TWGWGGSHGT
Sbjct:   324 GSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNNVFTWGWGGSHGT 383

Query:   373 FSEDGHSSGGQLDRG 387
             FS DGHSSGGQL  G
Sbjct:   384 FSVDGHSSGGQLGHG 398
GO:0003682 "chromatin binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5GLZ8 HERC4 "Probable E3 ubiquitin-protein ligase HERC4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCH3 HERC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFW5 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFV1 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAV2 HERC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-27
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-26
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-21
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-06
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  115 bits (289), Expect = 2e-28
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 19/275 (6%)

Query: 60  WRP--VVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATG---LNDFGQLGISENIGYS 112
             P  V   +  K  L+   LACG   ++ LT  G VY+ G     + GQ     +   S
Sbjct: 161 STPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS 220

Query: 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLG--KKAAKVIPIPTK 170
           ++   +   KK +VQ++ G  H  A+T +G++Y WG N  GQLG    ++   V+ +   
Sbjct: 221 IQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP 280

Query: 171 VECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230
               +    K  A G + S+A+   G++ +WG    G+LG G +  I           P 
Sbjct: 281 FAIRN---IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332

Query: 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR--PSLISKLP 288
             + L GV +   +AG  HS  + ++G +Y FG     ++  QE        P+ +S   
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI 392

Query: 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
             E+V CG +H    T  G +Y+WG  E+G LG G
Sbjct: 393 KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.91
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.85
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.26
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.09
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.09
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.87
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.7
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.09
KOG0646 476 consensus WD40 repeat protein [General function pr 94.08
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.45
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.45
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.81
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 92.26
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 92.01
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.42
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 88.14
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 87.02
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 86.67
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 85.95
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.23
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 84.96
KOG0315311 consensus G-protein beta subunit-like protein (con 83.38
PHA02713557 hypothetical protein; Provisional 82.16
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 81.91
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 81.63
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 81.62
PHA02713557 hypothetical protein; Provisional 81.38
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 81.32
KOG4693392 consensus Uncharacterized conserved protein, conta 81.09
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 80.37
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-50  Score=365.76  Aligned_cols=333  Identities=29%  Similarity=0.493  Sum_probs=272.2

Q ss_pred             ccccceEEEEEEcCCCCCcCCCCCCCe-eeeeeeccc--cCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCC--
Q 016197           33 STLQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE--  107 (393)
Q Consensus        33 ~~~~~~~v~~wG~n~~g~lG~~~~~~~-~~p~~~~~~--~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~--  107 (393)
                      ....-..||+||+|..++||++..+.. ..|+..++.  +...|++++||..|+++|++||.||+||.|..|+||...  
T Consensus        63 ~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~  142 (476)
T COG5184          63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK  142 (476)
T ss_pred             hhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence            334678899999999999999987765 889998887  667899999999999999999999999999999999765  


Q ss_pred             -------------CCCceecceEeccC-----CCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCccc----
Q 016197          108 -------------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVI----  165 (393)
Q Consensus       108 -------------~~~~~~~p~~i~~~-----~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~----  165 (393)
                                   ......+|.+++..     +.+|++++||++++++++++|+||.||....+.++.+...++.-    
T Consensus       143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~  222 (476)
T COG5184         143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ  222 (476)
T ss_pred             ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence                         22234677777741     33799999999999999999999999999998888875444322    


Q ss_pred             ccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEe
Q 016197          166 PIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA  245 (393)
Q Consensus       166 ~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~  245 (393)
                      .+|.++.   ...|+++++|.+|.++|+++|++|.||.+..+|||......+..     ....|+.   +.-..|..|+|
T Consensus       223 ~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~-----~~lv~~~---f~i~~i~~vac  291 (476)
T COG5184         223 FTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKL-----VVLVGDP---FAIRNIKYVAC  291 (476)
T ss_pred             eeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhccc-----ccccCCh---hhhhhhhhccc
Confidence            4444444   45699999999999999999999999999999999988644321     1111221   22224888999


Q ss_pred             CCceeEEEecCCcEEEEeCCCCCccccCCCC----CcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCC
Q 016197          246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGC  319 (393)
Q Consensus       246 g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gq  319 (393)
                      |.+|+++|+++|++|+||.|.++|++.++..    ....|+.......  |..++++..|+++|..+|.||.||.++.+|
T Consensus       292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q  371 (476)
T COG5184         292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ  371 (476)
T ss_pred             CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence            9999999999999999999999999998321    2334444444444  899999999999999999999999999999


Q ss_pred             CCCCC--CCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197          320 LGIGS--IDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP  391 (393)
Q Consensus       320 lG~g~--~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~  391 (393)
                      ||..+  ......|.++..   ..++.+++||..|+++.+ +|+||.||+            |.|||||.|....
T Consensus       372 lg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~~~~  431 (476)
T COG5184         372 LGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGPKEA  431 (476)
T ss_pred             ccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCchhh
Confidence            99988  666666776663   237999999999999999 999999999            6999999987543

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-42
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 3e-24
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-15
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-42
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-24
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-42
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-24
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-15
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-41
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-24
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-26
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-25
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 2e-12
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-20
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-06
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-20
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 9e-07
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 7e-19
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 6e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-15
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 1e-12
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 3e-04
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 166/330 (50%), Gaps = 18/330 (5%)
Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 28  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 88  RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 256 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWG 367
            +  V QVSCGW+HT A++E   +  WG G
Sbjct: 315 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG 344
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-95
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-79
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-72
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-63
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-25
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-86
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-78
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-74
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-55
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-23
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-81
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-73
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-72
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-40
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-79
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-73
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-62
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-50
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-71
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-64
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-56
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-50
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-43
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-39
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-23
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  289 bits (742), Expect = 4e-95
 Identities = 113/332 (34%), Positives = 166/332 (50%), Gaps = 18/332 (5%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99

Query: 102 QLGISENIGYSLEPLRISGLK-KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   +      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
                 +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD------- 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 --RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 326

Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWGGS 369
            +  V QVSCGW+HT A++E   +  WG G +
Sbjct: 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.71
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.25
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.9
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.77
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.17
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.05
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 95.79
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.76
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 95.27
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.89
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.82
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 94.79
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.45
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.3
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.27
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 94.07
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 93.62
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 93.53
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 92.48
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.2
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 91.04
3jrp_A379 Fusion protein of protein transport protein SEC13 90.57
2xyi_A430 Probable histone-binding protein CAF1; transcripti 89.91
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 89.43
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 89.43
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 89.07
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 88.92
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 88.7
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 87.43
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 87.06
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 86.04
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 85.89
3jrp_A379 Fusion protein of protein transport protein SEC13 85.71
3p6j_A142 De novo designed beta-trefoil architecture with S 84.47
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 84.02
2xyi_A430 Probable histone-binding protein CAF1; transcripti 84.0
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 83.93
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 83.85
3jro_A 753 Fusion protein of protein transport protein SEC13 83.33
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 83.01
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 82.48
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.32
4g56_B357 MGC81050 protein; protein arginine methyltransfera 82.13
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 81.29
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 80.99
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 80.57
3jro_A 753 Fusion protein of protein transport protein SEC13 80.42
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1e-68  Score=514.68  Aligned_cols=345  Identities=33%  Similarity=0.591  Sum_probs=314.3

Q ss_pred             ccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCC-cEEEEecC
Q 016197           20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG-CVYATGLN   98 (393)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G-~v~~wG~n   98 (393)
                      ...+++..|.++++  .++.||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||.|
T Consensus        19 ~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n   96 (406)
T 4d9s_A           19 LIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG   96 (406)
T ss_dssp             EEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECC
T ss_pred             EEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCC
Confidence            45566667777776  6899999999999999999999999999999999899999999999999999886 99999999


Q ss_pred             CCeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCc
Q 016197           99 DFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI  177 (393)
Q Consensus        99 ~~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~  177 (393)
                      .++|||.+.. .....|.++..+.. +|++|+||..|+++|+++|+||+||.|.+||||.+....  ...|.++..+.+.
T Consensus        97 ~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~~~~  173 (406)
T 4d9s_A           97 DFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQKIQAFEGI  173 (406)
T ss_dssp             GGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEEEECGGGTTC
T ss_pred             CCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccceEecccCCC
Confidence            9999999854 45577888876665 899999999999999999999999999999999988765  5678888888888


Q ss_pred             eEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCC
Q 016197          178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG  257 (393)
Q Consensus       178 ~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G  257 (393)
                      +|++|+||.+|+++|+++|+||+||.|.++|||.+..         .....|.++..+...+|++|+||.+|+++|+++|
T Consensus       174 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~---------~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G  244 (406)
T 4d9s_A          174 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR---------TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG  244 (406)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS---------CCEEEEEECCCSTTCCEEEEEECSSEEEEEETTC
T ss_pred             cEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC---------CCcCccEEecccCCceEEEEEECCCcEEEEcCCC
Confidence            9999999999999999999999999999999999876         4456788888787789999999999999999999


Q ss_pred             cEEEEeCCCCCccccCCCCCcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeec
Q 016197          258 RVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQ  335 (393)
Q Consensus       258 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~  335 (393)
                      +||+||.|.++|||.++......|.++..+.+  |++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.
T Consensus       245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  324 (406)
T 4d9s_A          245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR  324 (406)
T ss_dssp             CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred             CEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence            99999999999999998888888998887765  9999999999999999999999999999999999998888999997


Q ss_pred             CCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197          336 GPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP  391 (393)
Q Consensus       336 ~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~  391 (393)
                      . +...+|++|+||.+|+++++ +|+||+||+            |.+||||+|+..+
T Consensus       325 ~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~  368 (406)
T 4d9s_A          325 F-PDDQKVVQVSCGWRHTLAVTERNNVFAWGR------------GTNGQLGIGESVD  368 (406)
T ss_dssp             C-GGGCCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCCC
T ss_pred             c-cCCCcEEEEEeCCCeEEEEeCCCCEEEecC------------CCCCccCCCCCCC
Confidence            5 35669999999999999999 999999999            7999999998765
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-30
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-14
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-12
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-13
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-09
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.001
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 7e-30
 Identities = 78/353 (22%), Positives = 120/353 (33%), Gaps = 68/353 (19%)

Query: 81  AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
           +H    TE G V   G  D GQLG+ EN+    +P  +S  +  VVQ   G  H+  ++ 
Sbjct: 6   SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTVCLSK 64

Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--------------------------- 173
            G++Y +G N  G LG          +P KVE                            
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 174 ------------------------LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRL 209
                                      +   + A G +  V +T  G + + G G  G+L
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 210 GHGQESSILGFLRSTSE-------YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262
           G   E       R   E          +       V+ + A  G   +  I   G VY F
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 263 GDRAVDKMLFQEGNHARRPSLISKLPYSEEVV----CGGYHTCVLTSGGELYTWGSNENG 318
           G     ++          P  ++    S +       G +HT  + S G+ Y+ G  E G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304

Query: 319 CLGIGSIDVLHS-PERVQGPFSESPVDQVSCGWKHTAAISE-GKILTWGWGGS 369
            LG+G      S P  +        V  V+CG     A+++ G++  WG G +
Sbjct: 305 RLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTN 354
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.79
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.74
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 96.42
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 93.95
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 93.14
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 92.26
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 90.33
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 88.56
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 88.54
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 86.86
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 86.4
d1suua_304 DNA gyrase A C-terminal domain {Lyme disease spiro 85.36
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 84.39
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-55  Score=416.67  Aligned_cols=340  Identities=26%  Similarity=0.400  Sum_probs=272.9

Q ss_pred             ccccceEEEEEEcCCCCCcCCCCCC-CeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCc
Q 016197           33 STLQRRFAALWGNGDYGRLGLGSLE-SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGY  111 (393)
Q Consensus        33 ~~~~~~~v~~wG~n~~g~lG~~~~~-~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~  111 (393)
                      ..+++|+||+||.|.+||||.+... ++..|.++..+.  +|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus        10 ~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~   87 (401)
T d1a12a_          10 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG   87 (401)
T ss_dssp             CCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTT
T ss_pred             EECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccccccc
Confidence            3458999999999999999999654 588999998765  4999999999999999999999999999999998864443


Q ss_pred             -eecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEE
Q 016197          112 -SLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSV  190 (393)
Q Consensus       112 -~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~  190 (393)
                       .+.|..+. ..++|++|+||..|+++++++|+||+||.+..++++...... ....+..+....+.+|++|+||..|++
T Consensus        88 ~~~~~~~~~-~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~g~~~~~  165 (401)
T d1a12a_          88 SEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEP-MKKSMVPVQVQLDVPVVKVASGNDHLV  165 (401)
T ss_dssp             GGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBB-TBCEEEEEEECCSSCEEEEEECSSEEE
T ss_pred             ccccccccc-cccceeeecccccceeeccccccceeccccccccccccccCC-ccccceeeeeccCCceeEEEeccccee
Confidence             34555554 455999999999999999999999999988766655433332 122333344445567999999999999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCCCCCccccc--cccccccceeec-----cccCccEEEEEeCCceeEEEecCCcEEEEe
Q 016197          191 AVTGGGKVLSWGAGGSGRLGHGQESSILGFL--RSTSEYTPRLIK-----ELEGVKVKIAAAGFLHSACIDENGRVYIFG  263 (393)
Q Consensus       191 ~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~--~~~~~~~p~~i~-----~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG  263 (393)
                      +++++|++|+||.+.++|+|...........  .......|..+.     .....+|.+|+||.+|+++++++|+||.||
T Consensus       166 ~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g  245 (401)
T d1a12a_         166 MLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFG  245 (401)
T ss_dssp             EEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEE
T ss_pred             eeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeec
Confidence            9999999999999999999987643222111  111122233332     233457999999999999999999999999


Q ss_pred             CCCCCccccCCCCCcCCCccccCC----CCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCC-CCccCceeecCCC
Q 016197          264 DRAVDKMLFQEGNHARRPSLISKL----PYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSI-DVLHSPERVQGPF  338 (393)
Q Consensus       264 ~n~~gqlg~~~~~~~~~p~~i~~~----~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~-~~~~~p~~v~~~~  338 (393)
                      .+.+++++.........+..+..+    ..++.+++|..|+++++++|+||+||.|.+||||.++. +....|+++... 
T Consensus       246 ~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~-  324 (401)
T d1a12a_         246 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL-  324 (401)
T ss_dssp             CCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS-
T ss_pred             ccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCC-
Confidence            999999998876665544444433    34889999999999999999999999999999999864 455668887642 


Q ss_pred             CCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197          339 SESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP  391 (393)
Q Consensus       339 ~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~  391 (393)
                        .+|++|+||.+|++|++ ||+||+||+            |.+||||+|+..+
T Consensus       325 --~~i~~Is~G~~hs~alt~dG~v~~WG~------------n~~GQLG~G~~~~  364 (401)
T d1a12a_         325 --PAVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDED  364 (401)
T ss_dssp             --SSEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSC
T ss_pred             --CCeEEEEeeCCEEEEEeCCCeEEEEec------------CCCCCCCCCCCCC
Confidence              47999999999999999 999999999            7999999998754
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure