Citrus Sinensis ID: 016198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPAL
cccccccccccccccEEEEEEcccHHccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEEcccccHHHHcccccEEEcccccEEEEccccccccHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccEEEEEccHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEccHHHHHHHHHHHcccccccc
ccEEEEccccccccccEEEEccHHHHHHHHHHHEEEEEEccccccccccHHHccccEEEEccccEEEEEccEEEccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccEcccccccccccccccccccccccEHHHHccccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHcccEEEEEEcccccHHHHccccEEEEccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHccccccccccHHccccccccccEEccHHHHHcccccccccccccccccHHHHHHHHHHHHHccEEEEEcccHHHccHHHHHHHHHHccccEEEEEccccccccccEEEEcccHHHHHHHHHHHcccccccc
mpifkfqgkfnqknttmllrlpffsasrnssgMLARVKSEIVQSSIKAQQLLSkgrrvfphqgsvkfVQTSwrmsipglpssrhedkapaspkvlrdkkavpdadppsiedINQLYQFFDNSAKLIVLTGagistecgipdyrspngayssgfkpithqqfVRSSRARRRYWARSYAGWRRfmaaqpnpaHFALASLekagridcmitqnvdrlhhragsnplelhgTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAiesldygspgsdrsfgmkqrpdgdieidekfweedfhiptcqkcngvlkpddRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVgetraddlTTLKISARLGEILprvldvgslsipal
mpifkfqgkfnqknttMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLlskgrrvfphqgsvkfvqtsWRMSipglpssrhedkapaspkvlrdkkavpdADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGayssgfkpithqqfvrssrarRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIEsldygspgsdrsfgmKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGstiaivnvgetradDLTTLKISArlgeilprvldvgslsipal
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVrssrarrrywarsyagwrrFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPAL
*********F**KNTTMLLRLPFFS*******************************RVFPHQGSVKFVQTSWR*************************************DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL********************IEIDEKFWEEDFHIPTCQKCNGVLKP*******MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG*******
*PIFKF*GKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEI**********************SVKFVQTSWRMSIP********************************EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA*
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGL*************************DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPAL
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIP**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q94AQ6373 NAD-dependent protein dea yes no 0.921 0.970 0.706 1e-154
Q1JQC6315 NAD-dependent protein dea yes no 0.676 0.844 0.427 1e-62
Q8R216333 NAD-dependent protein dea yes no 0.676 0.798 0.433 1e-62
Q9Y6E7314 NAD-dependent protein dea yes no 0.676 0.847 0.437 7e-62
Q8IRR5312 NAD-dependent protein dea yes no 0.689 0.868 0.426 3e-57
F4P804305 NAD-dependent protein dea N/A no 0.623 0.803 0.421 3e-51
Q8PDM9293 NAD-dependent protein dea yes no 0.631 0.846 0.413 9e-51
Q4UZX0293 NAD-dependent protein dea yes no 0.631 0.846 0.413 9e-51
Q8PQK3293 NAD-dependent protein dea yes no 0.653 0.877 0.408 1e-50
Q89EA6273 NAD-dependent protein dea yes no 0.641 0.923 0.414 2e-50
>sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1 Back     alignment and function desciption
 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/375 (70%), Positives = 310/375 (82%), Gaps = 13/375 (3%)

Query: 29  NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
           N   +   V +++  S    + L S G  V   +G  +FV+T+ R+SIPG  S  +E KA
Sbjct: 2   NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60

Query: 89  PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
           P  P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61  P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118

Query: 149 YSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMIT 208
           YSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178

Query: 209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
           QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G 
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238

Query: 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAM 318
           PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPD          +RA +AM
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298

Query: 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 378
           E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+  AIVN+GETRADD+  LKI+AR+GEI
Sbjct: 299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358

Query: 379 LPRVLDVGSLSIPAL 393
           L RVLDVGSLS+PAL
Sbjct: 359 LHRVLDVGSLSVPAL 373
NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity). Negatively regulates plant basal defense against plant pathogens, possibly by suppressing salicylic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q1JQC6|SIR4_BOVIN NAD-dependent protein deacetylase sirtuin-4 OS=Bos taurus GN=SIRT4 PE=2 SV=1 Back     alignment and function description
>sp|Q8R216|SIR4_MOUSE NAD-dependent protein deacetylase sirtuin-4 OS=Mus musculus GN=Sirt4 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6E7|SIR4_HUMAN NAD-dependent protein deacetylase sirtuin-4 OS=Homo sapiens GN=SIRT4 PE=1 SV=1 Back     alignment and function description
>sp|Q8IRR5|SIR4_DROME NAD-dependent protein deacetylase Sirt4 OS=Drosophila melanogaster GN=Sirt4 PE=2 SV=2 Back     alignment and function description
>sp|F4P804|SIR4_BATDJ NAD-dependent protein deacetylase SIR4 OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) GN=BATDEDRAFT_20316 PE=3 SV=1 Back     alignment and function description
>sp|Q8PDM9|NPD_XANCP NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=cobB PE=3 SV=1 Back     alignment and function description
>sp|Q4UZX0|NPD_XANC8 NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=cobB PE=3 SV=1 Back     alignment and function description
>sp|Q8PQK3|NPD_XANAC NAD-dependent protein deacetylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=cobB PE=3 SV=2 Back     alignment and function description
>sp|Q89EA6|NPD2_BRAJA NAD-dependent protein deacetylase 2 OS=Bradyrhizobium japonicum (strain USDA 110) GN=cobB2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
145334337376 sirtuin 2 [Arabidopsis thaliana] gi|3320 0.926 0.968 0.705 1e-152
297806957356 hypothetical protein ARALYDRAFT_350148 [ 0.862 0.952 0.751 1e-152
18415923373 sirtuin 2 [Arabidopsis thaliana] gi|3068 0.921 0.970 0.706 1e-152
42573313354 sirtuin 2 [Arabidopsis thaliana] gi|2224 0.865 0.960 0.742 1e-151
224081046352 histone deacetylase [Populus trichocarpa 0.865 0.965 0.764 1e-151
9955510451 SIR2-family protein [Arabidopsis thalian 0.865 0.753 0.738 1e-150
449459214387 PREDICTED: NAD-dependent protein deacety 0.949 0.963 0.684 1e-150
255550570365 chromatin regulatory protein sir2, putat 0.849 0.915 0.737 1e-150
356507447393 PREDICTED: NAD-dependent ADP-ribosyltran 0.908 0.908 0.704 1e-148
359466801382 sirtuin 2 [Vitis vinifera] 0.923 0.950 0.707 1e-147
>gi|145334337|ref|NP_001078550.1| sirtuin 2 [Arabidopsis thaliana] gi|332003977|gb|AED91360.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/377 (70%), Positives = 311/377 (82%), Gaps = 13/377 (3%)

Query: 27  SRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHED 86
           S N   +   V +++  S    + L S G  V   +G  +FV+T+ R+SIPG  S  +E 
Sbjct: 3   SMNMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNES 61

Query: 87  KAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN 146
           KAP  P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPN
Sbjct: 62  KAP--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPN 119

Query: 147 GAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCM 206
           GAYSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ M
Sbjct: 120 GAYSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFM 179

Query: 207 ITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266
           ITQNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+
Sbjct: 180 ITQNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDH 239

Query: 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADK 316
           G PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPD          +RA +
Sbjct: 240 GDPGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQ 299

Query: 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLG 376
           AME AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+  AIVN+GETRADD+  LKI+AR+G
Sbjct: 300 AMEVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVG 359

Query: 377 EILPRVLDVGSLSIPAL 393
           EIL RVLDVGSLS+PAL
Sbjct: 360 EILHRVLDVGSLSVPAL 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297806957|ref|XP_002871362.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] gi|297317199|gb|EFH47621.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18415923|ref|NP_568207.1| sirtuin 2 [Arabidopsis thaliana] gi|30682583|ref|NP_850795.1| sirtuin 2 [Arabidopsis thaliana] gi|75249793|sp|Q94AQ6.1|SIR4_ARATH RecName: Full=NAD-dependent protein deacetylase SRT2; AltName: Full=Regulatory protein SIR2 homolog 2; Flags: Precursor gi|15028033|gb|AAK76547.1| putative SIR2-family protein [Arabidopsis thaliana] gi|21689769|gb|AAM67528.1| putative SIR2-family protein [Arabidopsis thaliana] gi|332003972|gb|AED91355.1| sirtuin 2 [Arabidopsis thaliana] gi|332003973|gb|AED91356.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42573313|ref|NP_974753.1| sirtuin 2 [Arabidopsis thaliana] gi|222423276|dbj|BAH19614.1| AT5G09230 [Arabidopsis thaliana] gi|332003975|gb|AED91358.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224081046|ref|XP_002306275.1| histone deacetylase [Populus trichocarpa] gi|222855724|gb|EEE93271.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9955510|emb|CAC05449.1| SIR2-family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449459214|ref|XP_004147341.1| PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255550570|ref|XP_002516335.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223544565|gb|EEF46082.1| chromatin regulatory protein sir2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356507447|ref|XP_003522478.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|359466801|gb|AEV46831.1| sirtuin 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:2184717373 SRT2 "AT5G09230" [Arabidopsis 0.921 0.970 0.656 1.1e-126
RGD|1310413311 Sirt4 "sirtuin 4" [Rattus norv 0.676 0.855 0.4 9.5e-50
MGI|MGI:1922637333 Sirt4 "sirtuin 4 (silent matin 0.676 0.798 0.4 2.5e-49
UNIPROTKB|F1PU57312 SIRT4 "NAD-dependent protein d 0.676 0.852 0.403 3.2e-49
UNIPROTKB|Q1JQC6315 SIRT4 "NAD-dependent protein d 0.676 0.844 0.396 4.1e-49
UNIPROTKB|Q9Y6E7314 SIRT4 "NAD-dependent protein d 0.676 0.847 0.406 1.4e-48
FB|FBgn0029783312 Sirt4 "Sirt4" [Drosophila mela 0.681 0.858 0.400 9.8e-48
UNIPROTKB|F1RJK2314 SIRT4 "NAD-dependent protein d 0.676 0.847 0.386 3.3e-47
UNIPROTKB|F1NB70294 SIRT4 "Uncharacterized protein 0.674 0.901 0.392 1.8e-46
ZFIN|ZDB-GENE-041010-65310 zgc:103539 "zgc:103539" [Danio 0.684 0.867 0.385 3.5e-43
TAIR|locus:2184717 SRT2 "AT5G09230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 246/375 (65%), Positives = 291/375 (77%)

Query:    29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
             N   +   V +++  S    + L S G  V   +G  +FV+T+ R+SIPG  S  +E KA
Sbjct:     2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60

Query:    89 PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
             P  P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct:    61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118

Query:   149 YSSGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMIT 208
             YSSGFKPITHQ+F                    F AAQP PAH ALASLEKAGRI+ MIT
Sbjct:   119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178

Query:   209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
             QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G 
Sbjct:   179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238

Query:   269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAM 318
             PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPD          +RA +AM
Sbjct:   239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298

Query:   319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 378
             E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+  AIVN+GETRADD+  LKI+AR+GEI
Sbjct:   299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358

Query:   379 LPRVLDVGSLSIPAL 393
             L RVLDVGSLS+PAL
Sbjct:   359 LHRVLDVGSLSVPAL 373
GO:0003677 "DNA binding" evidence=ISS
GO:0005677 "chromatin silencing complex" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006342 "chromatin silencing" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0006476 "protein deacetylation" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0070403 "NAD+ binding" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
RGD|1310413 Sirt4 "sirtuin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922637 Sirt4 "sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU57 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JQC6 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6E7 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0029783 Sirt4 "Sirt4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJK2 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB70 SIRT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-65 zgc:103539 "zgc:103539" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AQ6SIR4_ARATH3, ., 5, ., 1, ., -0.70660.92110.9705yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
cd01409260 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic 1e-133
PRK05333285 PRK05333, PRK05333, NAD-dependent deacetylase; Pro 3e-91
cd01407218 cd01407, SIR2-fam, SIR2 family of proteins include 4e-75
cd00296222 cd00296, SIR2, SIR2 superfamily of proteins includ 2e-61
COG0846250 COG0846, SIR2, NAD-dependent protein deacetylases, 2e-58
PRK00481242 PRK00481, PRK00481, NAD-dependent deacetylase; Pro 3e-54
cd01413222 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo 2e-52
cd01410206 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic 1e-43
cd01412224 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti 2e-43
PRK14138244 PRK14138, PRK14138, NAD-dependent deacetylase; Pro 2e-42
pfam02146177 pfam02146, SIR2, Sir2 family 1e-40
cd01411225 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic 4e-28
cd01408235 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w 3e-21
PTZ00409271 PTZ00409, PTZ00409, Sir2 (Silent Information Regul 1e-20
PTZ00408242 PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro 2e-17
PTZ00410349 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona 7e-09
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information 
 Score =  381 bits (980), Expect = e-133
 Identities = 149/276 (53%), Positives = 175/276 (63%), Gaps = 27/276 (9%)

Query: 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWAR 174
           L  F   S +L+VLTGAGISTE GIPDYRS  G YS  F+P+THQ+F+RS  AR+RYWAR
Sbjct: 1   LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWAR 60

Query: 175 SYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVV 233
           S+ GW RF AAQPN AH ALA+LE AGR+  +ITQNVD LH +AGS N +ELHG+++ VV
Sbjct: 61  SFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVV 120

Query: 234 CLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWE 293
           CL CGF   R   QD+++ALNP +AE                   Q PDGD    E    
Sbjct: 121 CLSCGFRTPRAELQDRLEALNPGFAEQAAG---------------QAPDGD-VDLEDEQV 164

Query: 294 EDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 343
             F +P C++C GVLKPD          DR   A     E DA LVLGSSLM  S YR V
Sbjct: 165 AGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224

Query: 344 RAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
            AA EAG  IAIVN+G TRAD L TLK+ AR GE+L
Sbjct: 225 LAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family Back     alignment and domain information
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
KOG2683305 consensus Sirtuin 4 and related class II sirtuins 100.0
cd01409260 SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla 100.0
PRK05333285 NAD-dependent deacetylase; Provisional 100.0
PRK14138244 NAD-dependent deacetylase; Provisional 100.0
COG0846250 SIR2 NAD-dependent protein deacetylases, SIR2 fami 100.0
PTZ00409271 Sir2 (Silent Information Regulator) protein; Provi 100.0
PRK00481242 NAD-dependent deacetylase; Provisional 100.0
cd01413222 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group 100.0
cd01408235 SIRT1 SIRT1: Eukaryotic group (class1) which inclu 100.0
PTZ00408242 NAD-dependent deacetylase; Provisional 100.0
cd01411225 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo 100.0
cd01412224 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea 100.0
cd01410206 SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla 100.0
cd01407218 SIR2-fam SIR2 family of proteins includes silent i 100.0
PTZ00410349 NAD-dependent SIR2; Provisional 100.0
cd00296222 SIR2 SIR2 superfamily of proteins includes silent 100.0
KOG2684412 consensus Sirtuin 5 and related class III sirtuins 100.0
KOG1905353 consensus Class IV sirtuins (SIR2 family) [Chromat 100.0
PF02146178 SIR2: Sir2 family; InterPro: IPR003000 These seque 100.0
KOG2682314 consensus NAD-dependent histone deacetylases and c 100.0
cd01406242 SIR2-like Sir2-like: Prokaryotic group of uncharac 98.93
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 96.11
PF00205137 TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr 95.61
COG3962 617 Acetolactate synthase [Amino acid transport and me 95.53
PF13289143 SIR2_2: SIR2-like domain 94.42
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 93.02
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 92.85
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 92.72
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 92.68
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 92.35
PRK08322 547 acetolactate synthase; Reviewed 92.28
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 92.2
PRK07524 535 hypothetical protein; Provisional 92.12
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 92.01
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 91.92
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 91.83
PLN02470 585 acetolactate synthase 91.82
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 91.82
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 91.67
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 91.64
TIGR00173432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 91.45
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 91.31
PRK08273 597 thiamine pyrophosphate protein; Provisional 91.12
PRK06154 565 hypothetical protein; Provisional 91.06
PRK11269 591 glyoxylate carboligase; Provisional 90.99
PRK08611 576 pyruvate oxidase; Provisional 90.81
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 90.8
PRK08155 564 acetolactate synthase catalytic subunit; Validated 90.8
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 90.8
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 90.75
PRK06112 578 acetolactate synthase catalytic subunit; Validated 90.64
PRK06546 578 pyruvate dehydrogenase; Provisional 90.42
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 90.36
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 90.35
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 90.09
PRK08266 542 hypothetical protein; Provisional 89.96
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 89.81
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 89.63
PRK08327 569 acetolactate synthase catalytic subunit; Validated 89.52
PRK08199 557 thiamine pyrophosphate protein; Validated 89.22
PRK05858 542 hypothetical protein; Provisional 89.2
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 88.9
PRK08617 552 acetolactate synthase; Reviewed 88.06
PRK09124 574 pyruvate dehydrogenase; Provisional 87.95
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 87.63
PF07295146 DUF1451: Protein of unknown function (DUF1451); In 87.54
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 87.26
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 87.24
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 87.07
PRK11032160 hypothetical protein; Provisional 86.25
PRK07064 544 hypothetical protein; Provisional 86.21
PLN02573 578 pyruvate decarboxylase 85.37
cd02766 501 MopB_3 The MopB_3 CD includes a group of related u 85.12
COG0777294 AccD Acetyl-CoA carboxylase beta subunit [Lipid me 83.78
cd02750 461 MopB_Nitrate-R-NarG-like Respiratory nitrate reduc 83.75
cd02765 567 MopB_4 The MopB_4 CD includes a group of related u 83.2
PRK07092 530 benzoylformate decarboxylase; Reviewed 83.07
PRK06457 549 pyruvate dehydrogenase; Provisional 82.94
PF0972342 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 82.82
PRK06266178 transcription initiation factor E subunit alpha; V 82.69
cd02768 386 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo 81.79
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 81.67
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 81.27
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 80.95
cd02753 512 MopB_Formate-Dh-H Formate dehydrogenase H (Formate 80.87
CHL00174296 accD acetyl-CoA carboxylase beta subunit; Reviewed 80.65
cd02759 477 MopB_Acetylene-hydratase The MopB_Acetylene-hydrat 80.47
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=8e-70  Score=503.79  Aligned_cols=287  Identities=60%  Similarity=1.005  Sum_probs=273.6

Q ss_pred             CCCCCCcCCCChhhhcccCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCC-CCCc-CCCCCCCh
Q 016198           81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH  158 (393)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~-Gl~~-~~~~p~~~  158 (393)
                      +++|+.+.+  +.....++.+|+++|..++++.+|..+|..+++++|+|||||||+||||||||++ |+|. ..++|+.+
T Consensus         6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h   83 (305)
T KOG2683|consen    6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH   83 (305)
T ss_pred             ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence            688888877  7777788999999999999999999999999999999999999999999999999 9998 57899999


Q ss_pred             HHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCC
Q 016198          159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC  237 (393)
Q Consensus       159 ~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C  237 (393)
                      ++|.++..-+++||+|.|.+|++|..++||++|++|++|++.|+++++||||||+||.+||++. .|+||+.+.+.|..|
T Consensus        84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C  163 (305)
T KOG2683|consen   84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC  163 (305)
T ss_pred             HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh------
Q 016198          238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD------  311 (393)
Q Consensus       238 ~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~------  311 (393)
                      ++..++..++++|..+||.|.++...++            +++||||++|++++ ++.|.||.|++|||.|||+      
T Consensus       164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd  230 (305)
T KOG2683|consen  164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD  230 (305)
T ss_pred             CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence            9999999999999999999998864432            37899999999997 7899999999999999999      


Q ss_pred             ----HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHH
Q 016198          312 ----DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV  382 (393)
Q Consensus       312 ----~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L  382 (393)
                          ++++.+++.+++||-+||+||||+|++.++++.+|+..+.++.+||.++|+.|+.++++|..+|++||+++
T Consensus       231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~  305 (305)
T KOG2683|consen  231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM  305 (305)
T ss_pred             CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence                78999999999999999999999999999999999999999999999999999999999999999999864

>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PRK05333 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PRK14138 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>PRK00481 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PTZ00408 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>PTZ00410 NAD-dependent SIR2; Provisional Back     alignment and domain information
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases Back     alignment and domain information
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>COG3962 Acetolactate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF13289 SIR2_2: SIR2-like domain Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>PRK11032 hypothetical protein; Provisional Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] Back     alignment and domain information
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins Back     alignment and domain information
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1) Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons Back     alignment and domain information
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1ma3_A253 Structure Of A Sir2 Enzyme Bound To An Acetylated P 1e-31
1yc5_A246 Sir2-P53 Peptide-Nicotinamide Length = 246 9e-28
2h4h_A246 Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 4e-27
2h59_A246 Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp 1e-26
1m2k_A249 Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng 3e-21
1m2g_A249 Sir2 Homologue-Adp Ribose Complex Length = 249 3e-21
1ici_A256 Crystal Structure Of A Sir2 Homolog-Nad Complex Len 3e-21
1m2h_A249 Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt 7e-21
1m2n_A249 Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety 1e-20
1m2j_A249 Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt 2e-20
3pki_A355 Human Sirt6 Crystal Structure In Complex With Adp R 2e-19
3k35_A318 Crystal Structure Of Human Sirt6 Length = 318 2e-19
4hda_A275 Crystal Structure Of Human Sirt5 In Complex With Fl 6e-14
2nyr_A271 Crystal Structure Of Human Sirtuin Homolog 5 In Com 6e-14
4g1c_A267 Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length 6e-14
3rig_A273 Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla 6e-14
2b4y_A271 Crystal Structure Of Human Sirtuin Homolog 5 Length 7e-14
3u31_A290 Plasmodium Falciparum Sir2a Preferentially Hydrolyz 2e-12
3jwp_A265 Crystal Structure Of Plasmodium Falciparum Sir2a (P 1e-11
1s5p_A235 Structure And Substrate Binding Properties Of Cobb, 6e-09
4i5i_A287 Crystal Structure Of The Sirt1 Catalytic Domain Bou 6e-09
4iao_A492 Crystal Structure Of Sir2 C543s Mutant In Complex W 7e-09
2hjh_A354 Crystal Structure Of The Sir2 Deacetylase Length = 2e-08
4fvt_A274 Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L 8e-08
3glr_A285 Crystal Structure Of Human Sirt3 With Acetyl-Lysine 1e-07
4hd8_A284 Crystal Structure Of Human Sirt3 In Complex With Fl 1e-07
1szc_A297 Structural Basis For Nicotinamide Cleavage And Adp- 2e-07
1q14_A361 Structure And Autoregulation Of The Yeast Hst2 Homo 2e-07
1q1a_A289 Structure Of The Yeast Hst2 Protein Deacetylase In 2e-07
2od7_A308 Crystal Structure Of Yhst2 Bound To The Intermediat 2e-07
1q17_A300 Structure Of The Yeast Hst2 Protein Deacetylase In 2e-07
2od2_A308 Crystal Structure Of Yhst2 I117f Mutant Bound To Ca 4e-07
1j8f_A323 Human Sirt2 Histone Deacetylase Length = 323 2e-06
1j8f_C323 Human Sirt2 Histone Deacetylase Length = 323 2e-06
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 Back     alignment and structure 
Iteration: 1

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 135/299 (45%), Gaps = 81/299 (27%)
Query: 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS----------SGFK--PIT 157
           ++I +  +    S   +V TGAGIS E GIP +R  +G +           SGFK  P  
Sbjct: 3   DEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRA 62
Query: 158 HQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHR 217
             +F                     + A+PNPAH+A+A LE+ G +  +ITQN+D LH R
Sbjct: 63  FWEFSMEMKDK--------------LFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQR 108
Query: 218 AGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 276
           AGS   LELHG++  + CLDC  ++               W+E +E  + G         
Sbjct: 109 AGSRRVLELHGSMDKLDCLDCHETY--------------DWSEFVEDFNKG--------- 145
Query: 277 MKQRPDGDIEIDEKFWEEDFHIPTCQKCN-----------GVLKPDDRADKAMEAAKECD 325
                                IP C+KC            G   P     +A+E AK CD
Sbjct: 146 --------------------EIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCD 185
Query: 326 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 384
           AF+V+GSSL+   A  L   A +AG+ + IVN   T AD +  +KI  + GE+LP++++
Sbjct: 186 AFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 Back     alignment and structure
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 Back     alignment and structure
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 Back     alignment and structure
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 Back     alignment and structure
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 Back     alignment and structure
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 Back     alignment and structure
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 Back     alignment and structure
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 Back     alignment and structure
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 Back     alignment and structure
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 Back     alignment and structure
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 Back     alignment and structure
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 Back     alignment and structure
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 Back     alignment and structure
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 Back     alignment and structure
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 Back     alignment and structure
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 Back     alignment and structure
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 Back     alignment and structure
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 Back     alignment and structure
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 Back     alignment and structure
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 Back     alignment and structure
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 Back     alignment and structure
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 Back     alignment and structure
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 Back     alignment and structure
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 Back     alignment and structure
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 4e-99
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 2e-90
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 2e-84
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 3e-82
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 2e-81
3pki_A355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 2e-80
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 3e-79
1m2k_A249 Silent information regulator 2; protein-ligand com 1e-70
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 6e-63
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 3e-54
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 8e-53
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 2e-48
1q14_A361 HST2 protein; histone deacetylase, hydrolase; 2.50 2e-47
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 Back     alignment and structure
 Score =  294 bits (756), Expect = 4e-99
 Identities = 66/295 (22%), Positives = 109/295 (36%), Gaps = 45/295 (15%)

Query: 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSS 165
            PS   +    +FF  +  +++++GAG+S E G+P +R   G +   ++       +  +
Sbjct: 6   RPS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFA 63

Query: 166 RARRRYWARSYAGWRRFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS- 220
               R W   +       + +PN  H A+A  E    K GR   +ITQN+D LH +AG+ 
Sbjct: 64  HNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 123

Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQR 280
           N LE+HG+++   C  CG               +P                      K  
Sbjct: 124 NLLEIHGSLFKTRCTSCGVVAEN--------YKSPICPA---------------LSGKGA 160

Query: 281 PDGDIEIDEKFWEEDFHIPTCQK--CNGVLKPD----------DRADKAMEAAKECDAFL 328
           P+   +           +P C++  C G+L+P              ++       CD  L
Sbjct: 161 PEPGTQDAS---IPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCL 217

Query: 329 VLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
           V+G+S +   A          G  +A  N   T A +          G  LP  L
Sbjct: 218 VVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 Back     alignment and structure
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 100.0
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 100.0
1m2k_A249 Silent information regulator 2; protein-ligand com 100.0
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 100.0
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 100.0
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 100.0
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 100.0
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 100.0
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 100.0
4iao_A492 NAD-dependent histone deacetylase SIR2; protein co 100.0
1q14_A361 HST2 protein; histone deacetylase, hydrolase; 2.50 100.0
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 100.0
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 100.0
3pki_A355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 100.0
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 92.11
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 90.9
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.07
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 89.77
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 89.27
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 89.02
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 88.73
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 88.15
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 87.92
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 87.56
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 86.97
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 86.16
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 84.86
1o97_D320 Electron transferring flavoprotein alpha-subunit; 82.67
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 82.32
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 80.59
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Back     alignment and structure
Probab=100.00  E-value=6.8e-60  Score=450.60  Aligned_cols=231  Identities=35%  Similarity=0.625  Sum_probs=197.9

Q ss_pred             HHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCC--CCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCCH
Q 016198          112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGF--KPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP  189 (393)
Q Consensus       112 l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~--~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~  189 (393)
                      +++|+++|++|++|||+|||||||+||||||||++|+|+. +  ..++++.|.++|..+|.||.+.+.   .+.+++||+
T Consensus         3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~   78 (246)
T 1yc5_A            3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL   78 (246)
T ss_dssp             CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred             HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence            5789999999999999999999999999999999999984 5  347888999999988888875432   356899999


Q ss_pred             HHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016198          190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS  268 (393)
Q Consensus       190 ~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~  268 (393)
                      +|++|++|+++|++++||||||||||++||+++ +|+||++..++|..|++.|+.+.+.+.+                  
T Consensus        79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------  140 (246)
T 1yc5_A           79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------  140 (246)
T ss_dssp             HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred             HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence            999999999999999999999999999999988 9999999999999999988765432111                  


Q ss_pred             CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198          269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMS  338 (393)
Q Consensus       269 p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p  338 (393)
                                         +      ...+|+||.|||.|||+          +.++++.+++++||++|||||||+|+|
T Consensus       141 -------------------~------~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P  195 (246)
T 1yc5_A          141 -------------------E------SSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP  195 (246)
T ss_dssp             -------------------T------TCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred             -------------------c------cCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchh
Confidence                               0      11579999999999999          468999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 016198          339 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS  389 (393)
Q Consensus       339 ~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~  389 (393)
                      +++|+..+++.|+++|+||+++++.++.++++|.++++++|++|++.|+|+
T Consensus       196 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~  246 (246)
T 1yc5_A          196 AAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS  246 (246)
T ss_dssp             GGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence            999999988889999999999999999999999999999999999999875
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Back     alignment and structure
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* Back     alignment and structure
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d2b4ya1267 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt 2e-60
d1ma3a_252 c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc 7e-50
d1yc5a1245 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA 7e-49
d1m2ka_249 c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar 7e-48
d1s5pa_235 c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch 2e-46
d1j8fa_323 c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho 5e-41
d1q1aa_289 c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c 5e-39
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 2e-60
 Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 41/292 (14%)

Query: 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSR 166
           PS   +    +FF  +  +++++GAG+S E G+P +R   G +   ++       +  + 
Sbjct: 1   PS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAH 58

Query: 167 ARRRYWARSYAGWRRFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-N 221
              R W   +       + +PN  H A+A  E      GR   +ITQN+D LH +AG+ N
Sbjct: 59  NPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN 118

Query: 222 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRP 281
            LE+HG+++   C  CG              + P  +                   K  P
Sbjct: 119 LLEIHGSLFKTRCTSCGVVAENYKSP-----ICPALSG------------------KGAP 155

Query: 282 DGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLG 331
           +   + D     E         C G+L+P              ++       CD  LV+G
Sbjct: 156 EPGTQ-DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVG 214

Query: 332 SSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
           +S +   A          G  +A  N   T A +          G  LP  L
Sbjct: 215 TSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 Back     information, alignment and structure
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 Back     information, alignment and structure
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1yc5a1245 NAD-dependent deacetylase NpdA {Thermotoga maritim 100.0
d1m2ka_249 AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo 100.0
d2b4ya1267 NAD-dependent deacetylase sirtuin-5 {Human (Homo s 100.0
d1ma3a_252 AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog 100.0
d1s5pa_235 NAD-dependent deacetylase CobB {Escherichia coli [ 100.0
d1q1aa_289 Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1j8fa_323 Sirt2 histone deacetylase {Human (Homo sapiens) [T 100.0
d2ihta1177 Carboxyethylarginine synthase {Streptomyces clavul 96.54
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 96.52
d2ji7a1175 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 96.41
d2djia1177 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.35
d2ez9a1183 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.32
d1ozha1179 Catabolic acetolactate synthase {Klebsiella pneumo 96.23
d1t9ba1171 Acetohydroxyacid synthase catalytic subunit {Baker 96.17
d1q6za1160 Benzoylformate decarboxylase {Pseudomonas putida [ 93.96
d1pvda1179 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 92.36
d1zpda1175 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 90.62
d1ovma1161 Indole-3-pyruvate decarboxylase {Enterobacter cloa 90.47
d3clsd2123 C-terminal domain of the electron transfer flavopr 89.06
d1efva2124 C-terminal domain of the electron transfer flavopr 88.54
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 81.67
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6e-60  Score=448.12  Aligned_cols=232  Identities=36%  Similarity=0.610  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCC-CCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCCH
Q 016198          111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGF-KPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP  189 (393)
Q Consensus       111 ~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~-~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~  189 (393)
                      ++++|+++|++|++|||+|||||||+||||||||++|+|++.- ..++.+.|.++|+.+|.||.+   .+..+.+++||+
T Consensus         2 k~~~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~G~w~~~~~~~~~~~~f~~~p~~~~~~~~~---~~~~~~~~~P~~   78 (245)
T d1yc5a1           2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKE---GIFPMLQAKPNL   78 (245)
T ss_dssp             CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHH---HTGGGGGCCCCH
T ss_pred             cHHHHHHHHHhCCCEEEEECchhccccCCCCccCcCCCccCCCcccccHHHHHhhhHHHHHHHHh---hhhhhhhhhhhh
Confidence            4689999999999999999999999999999999999997522 235788899988866666542   233467899999


Q ss_pred             HHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016198          190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS  268 (393)
Q Consensus       190 ~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~  268 (393)
                      +|++|++|+++|++.+||||||||||++||+++ +|+||++++.+|..|+..++.+.+...+                  
T Consensus        79 ~H~~L~~l~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~------------------  140 (245)
T d1yc5a1          79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------  140 (245)
T ss_dssp             HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred             hhHHHHHHHhcCCCceEeecccchHHHHcCCccccccccccceeeecccCCCccHHHHhhhh------------------
Confidence            999999999999999999999999999999999 9999999999999999998876543221                  


Q ss_pred             CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198          269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMS  338 (393)
Q Consensus       269 p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p  338 (393)
                                               .....|.|+.|||.|||+          +.++++.++++++|++|||||||+|+|
T Consensus       141 -------------------------~~~~~p~c~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~p  195 (245)
T d1yc5a1         141 -------------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP  195 (245)
T ss_dssp             -------------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred             -------------------------hcccCCCccccCCcccCcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEec
Confidence                                     012579999999999999          568899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCC
Q 016198          339 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSL  388 (393)
Q Consensus       339 ~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~  388 (393)
                      +++++..++++|+++|+||+++|++|+.++++|++||+++|++|++.|+|
T Consensus       196 ~~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~g~~~e~l~~l~~~lgi  245 (245)
T d1yc5a1         196 AAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI  245 (245)
T ss_dssp             GGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHHHcCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999886
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure