Citrus Sinensis ID: 016203

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MDEDISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELAAAGGRGRAHVETEDKEKGKGIRKENVQPKRKHVASHRRARGPVRIIDSEDLSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMARANQIPEPSVGRETNVDKPVLNPSVDAHLEPLQANQGNRKDESCSHQSNVPKSSLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
cccHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHcc
ccccHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHcHHHHHcccHHHHHHcccccccHHHHccccccccccHHHcccccccccccccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHccHHcccccccccccccccccccHHccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccHHHHccccccHHHHHHHHHcc
MDEDISRWVIEFLLRNSPSDQLINRILAIipisnnnnfrLKKTLLLRSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELAAAggrgrahvetedkekgkgirkenvqpkrkhvashrrargpvriidsedlssdepcsqydtlptpevNKVQEALKSSSLELQaivtdplpDALRQAEAVVSGMaranqipepsvgretnvdkpvlnpsvdahleplqanqgnrkdescshqsnvpksslmernstahayewddsideepsnqgnrfhlpspkrkavsplknhdvTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILksnpgafdertevdlkdkwrnvmry
MDEDISRWVIEFLlrnspsdqLINRILAiipisnnnnFRLKKTLLLRSIQSQlssdgdaslSKTILEnlkavrdldekeGIAITRSMEAAIRDAaentqnddalRQVVKTYLEEAWASMGPTFLELAAAGGRGRAhvetedkekgkgirkenvqpkrkhvashrrargpvriidsedlssdePCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMaranqipepsvgretnvdKPVLNPSVDAHLEPLQanqgnrkdescshqsnvpksslmerNSTAHAYEWDDSIDEEPSNQGNRFhlpspkrkavsplknhdvtklarrrkkkkwsleeedalrkgveqfgkgnwklilksnpgafdertevdlkdkwrnvmry
MDEDISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTlllrsiqsqlssDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELaaaggrgraHVETEDKEKGKGIRKENVQPKRKHVASHRRARGPVRIIDSEDLSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMARANQIPEPSVGRETNVDKPVLNPSVDAHLEPLQANQGNRKDESCSHQSNVPKSSLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
*****SRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSI****************L**L*AV********IAI*******************ALRQVVKTYLEEAWASMGPTFLELAAA*************************************************************************************************************************************************************************************************************************************FGKGNWKLILK************************
***DISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMG*******************************************************************************************************************************************************************************************************************************WSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
MDEDISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSIQ*********SLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELAA*************************************ARGPVRIIDSEDLSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMARANQIPEPSVGRETNVDKPVLNPSVDAHLEPLQAN*******************LMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKR**************************EEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
**EDISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELAAAGGRGRAHVETEDKEKG*********************************************PTPEVNKVQ**LKSSSLELQAIVTDPLPDALRQAEAVVS****************************************************************************************************************KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDEDISRWVIEFLLRNSPSDQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVVKTYLEEAWASMGPTFLELAAAGGRGRAHVETEDKEKGKGIRKENVQPKRKHVASHRRARGPVRIIDSEDLSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMARANQIPEPSVGRETNVDKPVLNPSVDAHLEPLQANQGNRKDESCSHQSNVPKSSLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q9C7B1619 Telomere repeat-binding p no no 0.300 0.190 0.346 2e-07
Q15554500 Telomeric repeat-binding yes no 0.129 0.102 0.452 9e-07
Q8VWK4 300 Telomere repeat-binding f no no 0.127 0.166 0.519 1e-06
O55036438 Telomeric repeat-binding no no 0.167 0.150 0.4 1e-06
P54274439 Telomeric repeat-binding no no 0.167 0.150 0.4 1e-06
O35144541 Telomeric repeat-binding yes no 0.124 0.090 0.450 2e-06
P70371421 Telomeric repeat-binding no no 0.134 0.125 0.454 3e-06
Q9M2X3 295 Telomere repeat-binding f no no 0.124 0.166 0.509 8e-06
F4I7L1 296 Telomere repeat-binding f no no 0.129 0.172 0.490 8e-06
F4IEY4 287 Telomere repeat-binding f no no 0.127 0.174 0.481 9e-06
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1 Back     alignment and function desciption
 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 6/124 (4%)

Query: 273 DESCSHQSNVPKS-SLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVS--PLKN 329
           D    H  +V  S ++++ N     Y+ D S+DE  S+      LP  + KA++  PL  
Sbjct: 437 DSGIPHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQ 496

Query: 330 H-DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFDERTEVDLKDKW 387
               T+LA+RR ++ +S+ E +AL + VE+ G G W+ + L++   A D RT VDLKDKW
Sbjct: 497 KPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDA-DHRTYVDLKDKW 555

Query: 388 RNVM 391
           + ++
Sbjct: 556 KTLV 559
Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1 SV=2 Back     alignment and function description
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1 Back     alignment and function description
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus GN=TERF1 PE=2 SV=1 Back     alignment and function description
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1 SV=3 Back     alignment and function description
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1 SV=3 Back     alignment and function description
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3 PE=1 SV=1 Back     alignment and function description
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2 Back     alignment and function description
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
359478489479 PREDICTED: uncharacterized protein LOC10 0.776 0.636 0.485 6e-71
449518651 559 PREDICTED: uncharacterized LOC101205896 0.679 0.477 0.516 2e-64
449444532 559 PREDICTED: uncharacterized protein LOC10 0.679 0.477 0.512 9e-64
255555485478 hypothetical protein RCOM_0813700 [Ricin 0.974 0.801 0.375 8e-61
147770945444 hypothetical protein VITISV_035031 [Viti 0.681 0.603 0.468 2e-55
255556560 637 telomeric repeat binding protein, putati 0.623 0.384 0.402 5e-49
356537674469 PREDICTED: uncharacterized protein LOC10 0.918 0.769 0.306 1e-42
356569449468 PREDICTED: uncharacterized protein LOC10 0.918 0.771 0.320 1e-40
357125047420 PREDICTED: uncharacterized protein LOC10 0.722 0.676 0.390 1e-38
326504822416 predicted protein [Hordeum vulgare subsp 0.707 0.668 0.364 1e-32
>gi|359478489|ref|XP_002276395.2| PREDICTED: uncharacterized protein LOC100244907 [Vitis vinifera] gi|297745761|emb|CBI15817.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 164/338 (48%), Positives = 212/338 (62%), Gaps = 33/338 (9%)

Query: 87  MEAAIRDA-------AENTQNDDALRQVVKTYLEEAWASMGPTFLELAA----------A 129
           +EAA+ DA       A+NT+ND ALR +V+ Y+ EAWA MGP FLELAA           
Sbjct: 144 IEAAVWDARVCEDILAKNTRND-ALR-LVRAYVAEAWAIMGPPFLELAARAIKLVEGLPG 201

Query: 130 GGRGRA---------HVETE--DKEKGKGIRKENVQPKRKHVASHRRARGP-VRIIDSED 177
            G G           +V T+    +K K   K ++ PKRKHV  H R     V+I D+E+
Sbjct: 202 AGNGSTCNQAAACSPNVATDLVVPDKDKETLKASMLPKRKHVGGHGRRSRGGVKITDTEE 261

Query: 178 LSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDALRQAEAVVSGMARANQI 237
           +      S+YD LP+PEV++VQ ALKSSSLELQA+V DPLP+AL+ AEAV+SG+A+ +  
Sbjct: 262 VRGQTSGSKYDCLPSPEVDRVQAALKSSSLELQALVKDPLPEALQLAEAVISGLAKKDVN 321

Query: 238 PEPSVGRETNVDKPVLNPSVDAHLEPLQANQGNRKDESCSHQSNVPKSSLMERNSTAHAY 297
            EP    +  +D    NPSV  +L   Q N+ +   +  + Q+NVP+ SLM RN TA   
Sbjct: 322 HEPLTKDQGIIDVAAPNPSVGKNLVADQTNEADSGHQCTTDQNNVPRPSLMARNGTARTC 381

Query: 298 EWDDSIDEEPS--NQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKG 355
           EWDDSID  P   +      LPSPKRKAVSPLK +++TKLA+RR+ KKWS+ EED LR G
Sbjct: 382 EWDDSIDASPEGLSSDTNICLPSPKRKAVSPLKKYEITKLAKRRQMKKWSILEEDTLRTG 441

Query: 356 VEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY 393
           V +FGKGNW LIL      F+ERT+VDLKDKWRN+ +Y
Sbjct: 442 VLKFGKGNWTLILNCYRDIFEERTQVDLKDKWRNMTKY 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449518651|ref|XP_004166350.1| PREDICTED: uncharacterized LOC101205896 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444532|ref|XP_004140028.1| PREDICTED: uncharacterized protein LOC101205896 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255555485|ref|XP_002518779.1| hypothetical protein RCOM_0813700 [Ricinus communis] gi|223542160|gb|EEF43704.1| hypothetical protein RCOM_0813700 [Ricinus communis] Back     alignment and taxonomy information
>gi|147770945|emb|CAN65086.1| hypothetical protein VITISV_035031 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556560|ref|XP_002519314.1| telomeric repeat binding protein, putative [Ricinus communis] gi|223541629|gb|EEF43178.1| telomeric repeat binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356537674|ref|XP_003537350.1| PREDICTED: uncharacterized protein LOC100819448 [Glycine max] Back     alignment and taxonomy information
>gi|356569449|ref|XP_003552913.1| PREDICTED: uncharacterized protein LOC100791258 [Glycine max] Back     alignment and taxonomy information
>gi|357125047|ref|XP_003564207.1| PREDICTED: uncharacterized protein LOC100830298 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326504822|dbj|BAK06702.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
UNIPROTKB|Q6T804426 AID1 "ANTHER INDEHISCENCE1" [O 0.541 0.5 0.404 1.1e-32
TAIR|locus:2161233448 AT5G58340 [Arabidopsis thalian 0.338 0.296 0.381 2.6e-17
TAIR|locus:2033071390 TRFL7 "TRF-like 7" [Arabidopsi 0.534 0.538 0.327 1.9e-16
TAIR|locus:2036174390 TRFL5 "TRF-like 5" [Arabidopsi 0.229 0.230 0.462 3.1e-16
TAIR|locus:2101232619 TRFL9 "TRF-like 9" [Arabidopsi 0.300 0.190 0.346 9.1e-09
UNIPROTKB|J9P539431 TERF1 "Uncharacterized protein 0.402 0.366 0.294 1.1e-07
UNIPROTKB|G3X7V3436 TERF1 "Uncharacterized protein 0.287 0.259 0.324 2.4e-07
UNIPROTKB|F1PBX6504 TERF2 "Uncharacterized protein 0.249 0.194 0.311 1.2e-06
UNIPROTKB|E2R1W7442 TERF1 "Uncharacterized protein 0.195 0.174 0.407 1.5e-06
UNIPROTKB|O55036438 TERF1 "Telomeric repeat-bindin 0.396 0.356 0.307 2.4e-06
UNIPROTKB|Q6T804 AID1 "ANTHER INDEHISCENCE1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 95/235 (40%), Positives = 130/235 (55%)

Query:   161 ASHRRARGPVRIIDSEDLSSDEPCSQYDTLPTPEVNKVQEALKSSSLELQAIVTDPLPDA 220
             A +R   G  R  + E     E   Q + + TPEV+KV +ALKSS   L ++V DPLP A
Sbjct:   211 AKYRLLAGEQRAREIEG-KLGETIPQGNQISTPEVHKVMDALKSSCANLHSVVEDPLPAA 269

Query:   221 LRQAEAVVSGMARANQIPEPSVGRETNVDKP--VLNPSVDAHLEPLQANQGNRKDESCSH 278
                A+ V++  AR ++  + + G  +N      +  PS  A  + L A    RK  +   
Sbjct:   270 KAAADEVLA--ARMDKAVDLNAGEVSNQPTACDIAGPSAPA--DNLDAP---RKGTA--- 319

Query:   279 QSNVPKSSLMERNSTAHAYEWDDSIDEEPSNQG-NRFHLPSPKRKAVSPLKNHDVTKLAR 337
                   +SLM+ N TA  ++W+DS D + S    +R  LPSP+R   SPL+  D    A+
Sbjct:   320 ------ASLMDWNPTARTFQWEDSPDPDGSRSPIHRPQLPSPRRTTFSPLQPAD--NKAK 371

Query:   338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
             RRK +KW   EE+ LRKGVEQ+G GNWK IL +NP  F  R  +DLKDKWRN+MR
Sbjct:   372 RRKARKWCALEEETLRKGVEQYGNGNWKDILTNNPDVFIGRKAMDLKDKWRNMMR 426
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0009901 "anther dehiscence" evidence=IMP
GO:0010152 "pollen maturation" evidence=IMP
GO:0043067 "regulation of programmed cell death" evidence=IMP
TAIR|locus:2161233 AT5G58340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033071 TRFL7 "TRF-like 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036174 TRFL5 "TRF-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101232 TRFL9 "TRF-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9P539 TERF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7V3 TERF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBX6 TERF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1W7 TERF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O55036 TERF1 "Telomeric repeat-binding factor 1" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 5e-18
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-09
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 7e-09
cd1165846 cd11658, SANT_DMAP1_like, SANT/myb-like domain of 0.001
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.003
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 76.8 bits (190), Expect = 5e-18
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
           +KW+ EE++AL +GVE++G GNW  ILK      + RT VDLKDKWRN+ +
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFV-NNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|212556 cd11658, SANT_DMAP1_like, SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.36
PLN03212 249 Transcription repressor MYB5; Provisional 99.19
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.09
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.05
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.98
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.96
PLN03091 459 hypothetical protein; Provisional 98.95
PLN03212 249 Transcription repressor MYB5; Provisional 98.89
PLN03091 459 hypothetical protein; Provisional 98.78
KOG0048 238 consensus Transcription factor, Myb superfamily [T 98.46
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.11
KOG0049 939 consensus Transcription factor, Myb superfamily [T 97.74
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.55
KOG0051 607 consensus RNA polymerase I termination factor, Myb 97.46
KOG0048 238 consensus Transcription factor, Myb superfamily [T 97.42
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.07
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 96.65
COG5147 512 REB1 Myb superfamily proteins, including transcrip 96.59
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 96.52
KOG1279 506 consensus Chromatin remodeling factor subunit and 95.78
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 95.47
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 95.2
COG5147 512 REB1 Myb superfamily proteins, including transcrip 95.04
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 94.98
KOG0051607 consensus RNA polymerase I termination factor, Myb 93.31
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 93.07
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 92.9
KOG4282 345 consensus Transcription factor GT-2 and related pr 92.71
KOG2656 445 consensus DNA methyltransferase 1-associated prote 87.71
PLN031421033 Probable chromatin-remodeling complex ATPase chain 87.68
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 87.3
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 85.0
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=99.36  E-value=6.1e-13  Score=97.19  Aligned_cols=47  Identities=32%  Similarity=0.713  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCC-CCChhHHHHHHHHhh
Q 016203          341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFD-ERTEVDLKDKWRNVM  391 (393)
Q Consensus       341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnll  391 (393)
                      |++||++|++.|+++|.+||.++|+.|+..    |+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR----MPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH----HSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH----cCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999889999998    77 999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1xg1_A67 Solution Structure Of Myb-Domain Of Human Trf2 Leng 2e-07
1vf9_A64 Solution Structure Of Human Trf2 Length = 64 2e-07
1vfc_A63 Solution Structure Of The Dna Complex Of Human Trf2 2e-07
3sjm_A64 Crystal Structure Analysis Of Trf2-Dbd-Dna Complex 2e-07
1w0u_A55 Htrf2 Dna-Binding Domain In Complex With Telomeric 5e-07
1iv6_A70 Solution Structure Of The Dna Complex Of Human Trf1 4e-06
1ity_A69 Solution Structure Of The Dna Binding Domain Of Hum 5e-06
1ba5_A53 Dna-Binding Domain Of Human Telomeric Protein, Htrf 1e-05
2juh_A121 Solution Structure Of Dna Binding Domain Of Ngtrf1 5e-05
1w0t_A53 Htrf1 Dna-Binding Domain In Complex With Telomeric 6e-05
2qhb_A86 Crystal Structure Of Ngtrf Complexed With Telomeric 3e-04
2aje_A105 Solution Structure Of The Arabidopsis Thaliana Telo 3e-04
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
           KK+KW++EE + ++ GV+++G+GNW  I K+ P  F  RT V +KD+WR + R
Sbjct: 13  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKR 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2 Length = 64 Back     alignment and structure
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2 Length = 63 Back     alignment and structure
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex Length = 64 Back     alignment and structure
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna. Length = 55 Back     alignment and structure
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1 Length = 70 Back     alignment and structure
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1 Length = 69 Back     alignment and structure
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1, Nmr, 18 Structures Length = 53 Back     alignment and structure
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 Length = 121 Back     alignment and structure
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna. Length = 53 Back     alignment and structure
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna Length = 86 Back     alignment and structure
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric Repeat-Binding Protein Dna Binding Domain Length = 105 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 5e-22
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 6e-22
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 4e-21
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 2e-20
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 2e-20
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 2e-19
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 3e-18
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 9e-09
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 2e-08
1h89_C 159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-07
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-05
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-04
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 3e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 7e-06
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-05
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-05
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 5e-05
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 9e-05
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 2e-04
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
 Score = 89.8 bits (222), Expect = 5e-22
 Identities = 24/83 (28%), Positives = 39/83 (46%)

Query: 311 GNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKS 370
           G+ F  P+    A  PL         +RR ++ +++ E + L + VE  G G W+ +   
Sbjct: 1   GSPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFR 60

Query: 371 NPGAFDERTEVDLKDKWRNVMRY 393
                  RT VDLKDKW+ ++  
Sbjct: 61  AFENVHHRTYVDLKDKWKTLVHT 83
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.82
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.71
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.7
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.68
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.65
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.65
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.63
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.62
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.55
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.53
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.53
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.46
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.45
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.41
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.34
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.32
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.32
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.32
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.29
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.26
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.24
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.23
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.22
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.21
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.21
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.2
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.19
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.18
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.18
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.15
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.12
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.68
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.0
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.87
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.78
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.66
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.42
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.16
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.06
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.02
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.93
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.51
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.43
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.09
2crg_A70 Metastasis associated protein MTA3; transcription 97.08
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.05
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.03
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.59
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.58
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.34
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.31
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.64
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 95.08
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 94.99
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 94.59
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 92.27
1ofc_X 304 ISWI protein; nuclear protein, chromatin remodelin 83.8
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 80.57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
Probab=99.82  E-value=9.1e-21  Score=163.99  Aligned_cols=80  Identities=29%  Similarity=0.519  Sum_probs=74.5

Q ss_pred             ccCCCCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203          313 RFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR  392 (393)
Q Consensus       313 r~~lpsP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr  392 (393)
                      .+..|+|.+.+++|+++++.++..+++++++||+|||+.|++||++||.|+|+.|+..+++.|.+||++||||||+|++|
T Consensus         3 ~~~~~~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A            3 PFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            35568999999999999988888999999999999999999999999999999999987777899999999999999985
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 5e-12
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 3e-10
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 3e-09
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-08
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 9e-05
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-04
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 4e-04
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 0.001
d1x58a149 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21ri 0.002
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 0.003
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 0.004
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 5e-12
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
           K++ W  EE+  LR GV ++G+GNW  IL      F+ RT V LKD+WR + +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKK 51
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 49 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.71
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.69
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.59
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.58
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.55
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.47
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.33
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.24
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.23
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.15
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.14
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.91
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.9
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 98.65
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.55
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.72
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.51
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.29
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 95.91
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 92.79
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 81.99
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.6e-18  Score=123.88  Aligned_cols=52  Identities=44%  Similarity=0.917  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203          340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY  393 (393)
Q Consensus       340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry  393 (393)
                      ++++||+|||+.|+++|++||.|+|+.|+..++  |.+||++||++||+||.|+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~K~   52 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL   52 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcC--CCCCCHHHHHHHHHHHHCc
Confidence            578999999999999999999999999998865  7799999999999999986
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure